Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 89
Found at i:7098897 original size:45 final size:45
Alignment explanation
Indices: 7098843--7099170 Score: 395
Period size: 45 Copynumber: 7.3 Consensus size: 45
7098833 ATTATTCATT
* *
7098843 ATTTCCATTTATGTCAACCTTTCATGCCTTTAATGCACCGTTATGC
1 ATTT-CATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* * *
7098889 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGAACCATTATAC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* * * * **
7098934 ATTTTAATTATGGCATCATTTCATGCCTTTAATACACTATTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* * * *
7098979 ATTTCAATTATGGCATACTTTCATTCCTTTAATGCACTGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* * * ** *
7099024 TTTTCATTTATGCCATCCTTTCATGCCTTTATTGCACTATTCTGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* * *
7099069 ATTTCATTTATGACATTCTTTCATGCCTTTAATGCACAGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* * * *
7099114 ATTTCATTTATGGCATCCTTTCATACCTTTAATACAACGTTATGT
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
7099159 ATTTCATTTATG
1 ATTTCATTTATG
7099171 TAATGAAAAT
Statistics
Matches: 242, Mismatches: 40, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
45 238 0.98
46 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (45 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
Found at i:7099099 original size:21 final size:21
Alignment explanation
Indices: 7099030--7099099 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
7099020 ATGCTTTTCA
* *
7099030 TTTATGCCATCCTTTCATGCC
1 TTTATGACATTCTTTCATGCC
* * *
7099051 TTTATTGCACTATTC-TGCATTTCA
1 TTTA-TG-AC-ATTCTTTCA-TGCC
7099075 TTTATGACATTCTTTCATGCC
1 TTTATGACATTCTTTCATGCC
7099096 TTTA
1 TTTA
7099100 ATGCACAGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
21 14 0.39
22 7 0.19
23 6 0.17
24 9 0.25
ACGTcount: A:0.19, C:0.24, G:0.09, T:0.49
Consensus pattern (21 bp):
TTTATGACATTCTTTCATGCC
Found at i:7108577 original size:13 final size:13
Alignment explanation
Indices: 7108559--7108583 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7108549 AATGAATTTT
7108559 AAGATTTTCTAAA
1 AAGATTTTCTAAA
7108572 AAGATTTTCTAA
1 AAGATTTTCTAA
7108584 GTATATTCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (13 bp):
AAGATTTTCTAAA
Found at i:7110248 original size:3 final size:3
Alignment explanation
Indices: 7110240--7110265 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7110230 GATACAGCTA
7110240 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
7110266 AACCCTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:7113802 original size:15 final size:15
Alignment explanation
Indices: 7113782--7113845 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
7113772 GTCCTAACAC
7113782 CATTAAGATAATGCA
1 CATTAAGATAATGCA
* *
7113797 CATTAAGGTTAATATCA
1 CATTAA-GATAAT-GCA
**
7113814 CATTAA-ATAATGTG
1 CATTAAGATAATGCA
*
7113828 CATTTAGATAATGCA
1 CATTAAGATAATGCA
7113843 CAT
1 CAT
7113846 GACTGTTGTT
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
14 5 0.14
15 19 0.51
16 5 0.14
17 8 0.22
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (15 bp):
CATTAAGATAATGCA
Found at i:7114003 original size:210 final size:211
Alignment explanation
Indices: 7113636--7114041 Score: 681
Period size: 210 Copynumber: 1.9 Consensus size: 211
7113626 AACCATTCAC
* *
7113636 GACTGTTGTTGTCCTGATGTTTTTCAAGGAACCCGAGGTAAGATTTCGTATCTCTTTCTCCTAAT
1 GACTGTTGTTGTCCTGATGTTTTTCAAGGAACCCGAGGTAAAATTTCGTATCTCTTCCTCCTAAT
* * *
7113701 TATGACTTTCGTACTTGGATCACTGGTGAGATCGTCAAAAAAAATTCGCTGTGTCATGGGGTGTA
66 TATGACTTTCGTACTTGGATCACTGGTGAGATCGTCAAAAAAAATTCACTATGTCATGGAGTGTA
* *
7113766 TCGACGGTCCTAACACCATTAAGATAATGCACATTAAGGTTAATATCACA-TTAAATAATGTGCA
131 TCGACGGTCCTAAAACCATTAAGATAATGCACATGAAGGTTAATATCACACTTAAATAATGTGCA
7113830 TTTAGATAATGCACAT
196 TTTAGATAATGCACAT
* *
7113846 GACTGTTGTTGTCCTGATGTTTTTCAAGGAACCCGAGGTAAAATTTTGTATCTCTTCCTCCTGAT
1 GACTGTTGTTGTCCTGATGTTTTTCAAGGAACCCGAGGTAAAATTTCGTATCTCTTCCTCCTAAT
*
7113911 TCTGACTTTCGTACTTGGATCACTGGTGAGATCGTCAAAAAAAAATT-ACTATGTCATGGAGTGT
66 TATGACTTTCGTACTTGGATCACTGGTGAGATCGTC-AAAAAAAATTCACTATGTCATGGAGTGT
* *
7113975 ATCGACGGTCCTAAAACCATTCAGATAATGCACATGAAGGTTAATATCACACTTAGATAATGTGC
130 ATCGACGGTCCTAAAACCATTAAGATAATGCACATGAAGGTTAATATCACACTTAAATAATGTGC
7114040 AT
195 AT
7114042 CAGATACAGT
Statistics
Matches: 182, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
210 158 0.87
211 24 0.13
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (211 bp):
GACTGTTGTTGTCCTGATGTTTTTCAAGGAACCCGAGGTAAAATTTCGTATCTCTTCCTCCTAAT
TATGACTTTCGTACTTGGATCACTGGTGAGATCGTCAAAAAAAATTCACTATGTCATGGAGTGTA
TCGACGGTCCTAAAACCATTAAGATAATGCACATGAAGGTTAATATCACACTTAAATAATGTGCA
TTTAGATAATGCACAT
Found at i:7114917 original size:23 final size:22
Alignment explanation
Indices: 7114891--7114935 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
7114881 TTTTAATCCA
7114891 AAAT-TAATTCCTAATAAAATAAT
1 AAATCTAA-TCCTAA-AAAATAAT
*
7114914 AAATCTAATCCTAAAAGATAAT
1 AAATCTAATCCTAAAAAATAAT
7114936 GTATCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 10 0.50
24 3 0.15
ACGTcount: A:0.56, C:0.11, G:0.02, T:0.31
Consensus pattern (22 bp):
AAATCTAATCCTAAAAAATAAT
Found at i:7115838 original size:32 final size:32
Alignment explanation
Indices: 7115801--7115880 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
7115791 GTACTACTAC
**
7115801 GCATTATCTAAATGCA-ACATTGATAC-TCTTGT
1 GCATTATCTAAATGCATAC-TTGA-ACATAATGT
* *
7115833 TCATTATCTGAATGCATACTTGAACATAATGT
1 GCATTATCTAAATGCATACTTGAACATAATGT
7115865 GCATTATCTAAATGCA
1 GCATTATCTAAATGCA
7115881 CCTTGACTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 2 0.05
32 36 0.90
33 2 0.05
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.36
Consensus pattern (32 bp):
GCATTATCTAAATGCATACTTGAACATAATGT
Found at i:7116969 original size:20 final size:20
Alignment explanation
Indices: 7116946--7117002 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
7116936 ATACTCGATC
*
7116946 TTCGATATGGAGACCAGTCT
1 TTCGATATGGAGACCAGTAT
* * *
7116966 TTCGGTGTGGAGACTAGTAT
1 TTCGATATGGAGACCAGTAT
7116986 TTC-AGTATGGAGACCAG
1 TTCGA-TATGGAGACCAG
7117003 CGGTTTCGAG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (20 bp):
TTCGATATGGAGACCAGTAT
Found at i:7123079 original size:32 final size:32
Alignment explanation
Indices: 7123038--7123146 Score: 94
Period size: 32 Copynumber: 3.4 Consensus size: 32
7123028 ATTAGTGTTA
*
7123038 CATTTAGATAATGTATAGTAAAGTCAGTATTG
1 CATTAAGATAATGTATAGTAAAGTCAGTATTG
* * * * *
7123070 CATTAAGATAATGCACA-TCATAGTAAATATTG
1 CATTAAGATAATGTATAGT-AAAGTCAGTATTG
* * * * *
7123102 TATTTAGAAAATGTATAGCAAAGCCAGTATTG
1 CATTAAGATAATGTATAGTAAAGTCAGTATTG
*
7123134 CATTAAGGTAATG
1 CATTAAGATAATG
7123147 CACAAAAGAG
Statistics
Matches: 55, Mismatches: 20, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
31 1 0.02
32 54 0.98
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.33
Consensus pattern (32 bp):
CATTAAGATAATGTATAGTAAAGTCAGTATTG
Found at i:7123241 original size:32 final size:32
Alignment explanation
Indices: 7123142--7123234 Score: 132
Period size: 32 Copynumber: 2.9 Consensus size: 32
7123132 TGCATTAAGG
* * *
7123142 TAATGCACAAAAGAGTTAGTGTTCCATTCTGA
1 TAATGCATAACAGAGTTAGTGTTGCATTCTGA
*
7123174 TAATGCATAACAGAGTTAGTCTTGCATTCTGA
1 TAATGCATAACAGAGTTAGTGTTGCATTCTGA
* *
7123206 TAATGCATAGCAGAGTTAGTGTTGTATTC
1 TAATGCATAACAGAGTTAGTGTTGCATTC
7123235 AAATAATACA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (32 bp):
TAATGCATAACAGAGTTAGTGTTGCATTCTGA
Found at i:7125070 original size:58 final size:58
Alignment explanation
Indices: 7124981--7125101 Score: 206
Period size: 58 Copynumber: 2.1 Consensus size: 58
7124971 TAAGCACCCC
* *
7124981 TAGTAGTAGAGGTTGATAGTTTGGAAGCAATAAAAGCGTTAAAGGCGACAGAATCCGG
1 TAGTACTAGAGGTTGATAGTTTGGAAGCAATAAAAGCGTTAAAAGCGACAGAATCCGG
* *
7125039 TAGTACTAGGGGTTGATAGTTTGGAAGCAATAAAAGCGTTAAAAGCGACAGAATCTGG
1 TAGTACTAGAGGTTGATAGTTTGGAAGCAATAAAAGCGTTAAAAGCGACAGAATCCGG
7125097 TAGTA
1 TAGTA
7125102 GTAGTAGGGT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.36, C:0.10, G:0.30, T:0.24
Consensus pattern (58 bp):
TAGTACTAGAGGTTGATAGTTTGGAAGCAATAAAAGCGTTAAAAGCGACAGAATCCGG
Found at i:7126950 original size:29 final size:28
Alignment explanation
Indices: 7126885--7126952 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
7126875 AATAAAATGA
*
7126885 ATATAATAATTTTTCCTAAGAATTTAAT
1 ATATAATAATTTTTCATAAGAATTTAAT
* *
7126913 ATTAAAATAATTTTT-ATATGATATTATAAT
1 A-TATAATAATTTTTCATAAGA-ATT-TAAT
7126943 ATATAATAAT
1 ATATAATAAT
7126953 ACAGGCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
28 5 0.15
29 23 0.70
30 5 0.15
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (28 bp):
ATATAATAATTTTTCATAAGAATTTAAT
Found at i:7128577 original size:170 final size:174
Alignment explanation
Indices: 7128290--7128634 Score: 653
Period size: 170 Copynumber: 2.0 Consensus size: 174
7128280 TCAAGCTCCA
7128290 ATTTTTTCTTATCGGGTGAGTTCTTCTCATTATGAACTCTTTGTTGGGGATGTCAATCCACTCAT
1 ATTTTTTCTTATC-GGTGAGTTCTTCTCATTATGAACTCTTTGTTGGGGATGTCAATCCACTCAT
7128355 TCTGTGAAATCGTCGAGTCCTTGCTGTAAATTATGTCATCTTGCTTCGTTCTCTCTGTTAAGTCT
65 TCTGTGAAATCGTCGAGTCCTTGCTGTAAATTATGTCATCTTGCTTCGTTCTCTCTGTTAAGTCT
7128420 TCATATTTAGTTCTTCAAGTCACGGGTTCTTCTCATCCTGGTCTT
130 TCATATTTAGTTCTTCAAGTCACGGGTTCTTCTCATCCTGGTCTT
7128465 ATTTTTTCTTATC-G-G-GTTCTTCTCATTATGAACTC-TTGTTGGGGATGTCAATCCACTCATT
1 ATTTTTTCTTATCGGTGAGTTCTTCTCATTATGAACTCTTTGTTGGGGATGTCAATCCACTCATT
7128526 CTGTGAAATCGTCGAGTCCTTGCTGTAAATTATGTCATCTTGCTTCGTTCTCTCTGTTAAGTCTT
66 CTGTGAAATCGTCGAGTCCTTGCTGTAAATTATGTCATCTTGCTTCGTTCTCTCTGTTAAGTCTT
7128591 CATATTTAGTTCTTCAAGTCACGGGTTCTTCTCATCCTGGTCTT
131 CATATTTAGTTCTTCAAGTCACGGGTTCTTCTCATCCTGGTCTT
7128635 CCCATTGGAA
Statistics
Matches: 170, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
170 135 0.79
171 20 0.12
172 1 0.01
173 1 0.01
175 13 0.08
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.44
Consensus pattern (174 bp):
ATTTTTTCTTATCGGTGAGTTCTTCTCATTATGAACTCTTTGTTGGGGATGTCAATCCACTCATT
CTGTGAAATCGTCGAGTCCTTGCTGTAAATTATGTCATCTTGCTTCGTTCTCTCTGTTAAGTCTT
CATATTTAGTTCTTCAAGTCACGGGTTCTTCTCATCCTGGTCTT
Found at i:7128824 original size:42 final size:41
Alignment explanation
Indices: 7128762--7128869 Score: 130
Period size: 41 Copynumber: 2.6 Consensus size: 41
7128752 AGTGAGGTGT
* * *
7128762 TGTTGATTCAACTCCATATGTGATGAACT-AGCGAAATGAT-GA
1 TGTTGATCCAACTCCTTATGTGATGAA-TGAGC-AAAAG-TCGA
*
7128804 TGTTGATCCAACTCCTTATGTGATGGATGAGCAAAAGTCGA
1 TGTTGATCCAACTCCTTATGTGATGAATGAGCAAAAGTCGA
*
7128845 TGTTGTTCCAACTCCTTATGTGATG
1 TGTTGATCCAACTCCTTATGTGATG
7128870 GAAACAAGCT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
40 1 0.02
41 31 0.53
42 27 0.46
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (41 bp):
TGTTGATCCAACTCCTTATGTGATGAATGAGCAAAAGTCGA
Found at i:7128913 original size:21 final size:21
Alignment explanation
Indices: 7128884--7128959 Score: 127
Period size: 21 Copynumber: 3.6 Consensus size: 21
7128874 CAAGCTAAGG
*
7128884 TTGTCTCAAGGGAGACAAAAT
1 TTGTTTCAAGGGAGACAAAAT
7128905 TTGTTTCAAGGGAGACAAAAT
1 TTGTTTCAAGGGAGACAAAAT
7128926 TTGTTTCAAGGGAGACAAAAT
1 TTGTTTCAAGGGAGACAAAAT
7128947 TT-TTTGCAAGGGA
1 TTGTTT-CAAGGGA
7128960 AACTGTCTCA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
20 3 0.06
21 50 0.94
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.29
Consensus pattern (21 bp):
TTGTTTCAAGGGAGACAAAAT
Found at i:7128992 original size:21 final size:20
Alignment explanation
Indices: 7128889--7128995 Score: 73
Period size: 21 Copynumber: 5.4 Consensus size: 20
7128879 TAAGGTTGTC
* *
7128889 TCAAGGGAGACAAAATTTGTT
1 TCAAGGGAGAC-AAACTTCTT
* *
7128910 TCAAGGGAGACAAAATTTGTT
1 TCAAGGGAGAC-AAACTTCTT
* *
7128931 TCAAGGGAGACAAAATTTTT
1 TCAAGGGAGACAAACTTCTT
7128951 TGCAA-GG-G--AAACTGTC--
1 T-CAAGGGAGACAAACT-TCTT
7128967 TCAAGGGAGACTAAACTTCTT
1 TCAAGGGAGAC-AAACTTCTT
7128988 TCAAGGGA
1 TCAAGGGA
7128996 AACTATCTCA
Statistics
Matches: 73, Mismatches: 4, Indels: 18
0.77 0.04 0.19
Matches are distributed among these distances:
15 3 0.04
16 3 0.04
17 5 0.07
18 1 0.01
19 3 0.04
20 15 0.21
21 43 0.59
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.26
Consensus pattern (20 bp):
TCAAGGGAGACAAACTTCTT
Found at i:7128993 original size:36 final size:37
Alignment explanation
Indices: 7128931--7129142 Score: 186
Period size: 39 Copynumber: 5.6 Consensus size: 37
7128921 AAAATTTGTT
* * *
7128931 TCAAGGGAGACAAAAT-TT-TTTGCAAGGGAAACTGTC
1 TCAAGCGAGACTAAATCTTCTTT-CAAGGGAAACTATC
*
7128967 TCAAGGGAGACTAAA-CTTCTTTCAAGGGAAACTATC
1 TCAAGCGAGACTAAATCTTCTTTCAAGGGAAACTATC
*
7129003 TCAAGCGAGA-TAAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGACT-AAATCTTC--TTTCAAGGGAAACTATC
* * *
7129042 TTAAGCGAGA-TAAAGTCTTCTGTTTCGAGGGCAACTATC
1 TCAAGCGAGACTAAA-TCTTC--TTTCAAGGGAAACTATC
* *
7129081 TCAAGCGAGACAAAATCTTCTGTTTCGAA-TGAAACTATC
1 TCAAGCGAGACTAAATCTTC--TTTC-AAGGGAAACTATC
7129120 TCAAGCGAGA-TAAAATCTTCTTT
1 TCAAGCGAGACT-AAATCTTCTTT
7129143 AAAAAACAAT
Statistics
Matches: 154, Mismatches: 12, Indels: 19
0.83 0.06 0.10
Matches are distributed among these distances:
35 1 0.01
36 41 0.27
37 10 0.06
38 3 0.02
39 95 0.62
40 4 0.03
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (37 bp):
TCAAGCGAGACTAAATCTTCTTTCAAGGGAAACTATC
Found at i:7129036 original size:39 final size:39
Alignment explanation
Indices: 7128955--7129140 Score: 254
Period size: 39 Copynumber: 4.8 Consensus size: 39
7128945 ATTTTTTGCA
* * *
7128955 AGGGAAACTGTCTCAAGGGAGACT-AAA-CTTC--TTTCA
1 AGGGAAACTATCTCAAGCGAGA-TAAAATCTTCTGTTTCG
7128991 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
7129030 AGGGAAACTATCTTAAGCGAGATAAAGTCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
7129069 AGGGCAACTATCTCAAGCGAGACAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
**
7129108 AATGAAACTATCTCAAGCGAGATAAAATCTTCT
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCT
7129141 TTAAAAAACA
Statistics
Matches: 133, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
35 1 0.01
36 23 0.17
37 4 0.03
39 105 0.79
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (39 bp):
AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
Found at i:7129235 original size:76 final size:76
Alignment explanation
Indices: 7129144--7129532 Score: 491
Period size: 76 Copynumber: 5.1 Consensus size: 76
7129134 ATCTTCTTTA
* * * * *
7129144 AAAAACAATCTTGAGTGAAATGAAAT-ATATTCTTTCGAGTAAAAACCATCTCAAGAGAGACAAA
1 AAAAACAATCTTGAGTGAAAT-AAATCTTCTTGTTTCGAGTAAAAACCGTCTCAAGTGAGACAAA
7129208 TCTTGTTTTAAG
65 TCTTGTTTTAAG
** * **
7129220 AAAAACAATAATGAGTGAAATAAATCTTCTTGTTTCGAGTAAAAATCGTCTCAAACGAGACAAAT
1 AAAAACAATCTTGAGTGAAATAAATCTTCTTGTTTCGAGTAAAAACCGTCTCAAGTGAGACAAAT
7129285 CTTGTTTTAAG
66 CTTGTTTTAAG
* * * *
7129296 AAAAACAATCTTGAGTGAAATAAATCTTCTTGTTTTGAGTAAAAGCTGTCTCAAGTGATACAAAT
1 AAAAACAATCTTGAGTGAAATAAATCTTCTTGTTTCGAGTAAAAACCGTCTCAAGTGAGACAAAT
* *
7129361 TTTGCTTTAAG
66 CTTGTTTTAAG
* * *
7129372 AAAAACAATCTTGAGTGAAATAAATCTTATTGTTTCGAGTAAAAACAGCCTCAAGTGAGACAAAG
1 AAAAACAATCTTGAGTGAAATAAATCTTCTTGTTTCGAGTAAAAACCGTCTCAAGTGAGACAAA-
7129437 TC-TGTTTTAAG
65 TCTTGTTTTAAG
** * * * *
7129448 -AAAACAATCTCAAGTGAGATAAATATTCTTGTTTCGAGTAAAAACTGCCTCAAGTGAGACAAAG
1 AAAAACAATCTTGAGTGAAATAAATCTTCTTGTTTCGAGTAAAAACCGTCTCAAGTGAGACAAA-
7129512 TC-TGTTTTAAG
65 TCTTGTTTTAAG
7129523 -AAAACAATCT
1 AAAAACAATCT
7129533 CAAGTGCGAT
Statistics
Matches: 277, Mismatches: 34, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
75 83 0.30
76 193 0.70
77 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (76 bp):
AAAAACAATCTTGAGTGAAATAAATCTTCTTGTTTCGAGTAAAAACCGTCTCAAGTGAGACAAAT
CTTGTTTTAAG
Found at i:7129321 original size:36 final size:36
Alignment explanation
Indices: 7129205--7129399 Score: 113
Period size: 36 Copynumber: 5.2 Consensus size: 36
7129195 CAAGAGAGAC
**
7129205 AAATCTTGTTTTAAGAAAAACAATAATGAGTGAAAT
1 AAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
** * ** ** * *
7129241 AAATCTTCTTGTTTCGAGTAAAAATC-GTCTCAAACGAGAC
1 AAA---TCTTGTTTTAAG-AAAAA-CAATCTTGAGTGAAAT
7129281 AAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
1 AAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
* * ** ** * *
7129317 AAATCTTCTTGTTTTGAGTAAAAGCTGTCTCAAGTGATAC
1 AAA---TCTTGTTTTAAG-AAAAACAATCTTGAGTGAAAT
* *
7129357 AAATTTTGCTTTAAGAAAAACAATCTTGAGTGAAAT
1 AAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
7129393 AAATCTT
1 AAATCTT
7129400 ATTGTTTCGA
Statistics
Matches: 110, Mismatches: 39, Indels: 20
0.65 0.23 0.12
Matches are distributed among these distances:
35 1 0.01
36 38 0.35
37 19 0.17
39 21 0.19
40 30 0.27
41 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (36 bp):
AAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
Found at i:7129452 original size:35 final size:35
Alignment explanation
Indices: 7129413--7129538 Score: 126
Period size: 35 Copynumber: 3.5 Consensus size: 35
7129403 GTTTCGAGTA
*
7129413 AAAACAGCCTCAAGTGAGACAAAGTCTGTTTTAAG
1 AAAACAACCTCAAGTGAGACAAAGTCTGTTTTAAG
* * * **
7129448 AAAACAATCTCAAGTGAGATAAATATTCTTGTTTCGAG
1 AAAACAACCTCAAGTGAGA-CAA-AGTC-TGTTTTAAG
**
7129486 TAAAAACTGCCTCAAGTGAGACAAAGTCTGTTTTAAG
1 --AAAACAACCTCAAGTGAGACAAAGTCTGTTTTAAG
*
7129523 AAAACAATCTCAAGTG
1 AAAACAACCTCAAGTG
7129539 CGATAAATCC
Statistics
Matches: 70, Mismatches: 16, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
35 30 0.43
36 2 0.03
37 10 0.14
38 10 0.14
39 2 0.03
40 16 0.23
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.26
Consensus pattern (35 bp):
AAAACAACCTCAAGTGAGACAAAGTCTGTTTTAAG
Found at i:7129538 original size:75 final size:75
Alignment explanation
Indices: 7129093--7129532 Score: 484
Period size: 76 Copynumber: 5.9 Consensus size: 75
7129083 AAGCGAGACA
* * * * *
7129093 AAATCTTC-TGTTTCGAAT-GAAACTATCTCAAGCGAGATAAAATCT-TCTTT-A-AAAAACAAT
1 AAATCTTCTTGTTTCGAGTAAAAACTGTCTCAAGTGAGA-CAAATCTGT-TTTAAGAAAAACAAT
7129153 CTTGAGTGAAAT
64 CTTGAGTGAAAT
* * * ** *
7129165 GAAAT-ATATTCTTTCGAGTAAAAACCATCTCAAGAGAGACAAATCTTGTTTTAAGAAAAACAAT
1 -AAATCTTCTTGTTTCGAGTAAAAACTGTCTCAAGTGAGACAAATC-TGTTTTAAGAAAAACAAT
**
7129229 AATGAGTGAAAT
64 CTTGAGTGAAAT
**
7129241 AAATCTTCTTGTTTCGAGTAAAAA-TCGTCTCAAACGAGACAAATCTTGTTTTAAGAAAAACAAT
1 AAATCTTCTTGTTTCGAGTAAAAACT-GTCTCAAGTGAGACAAATC-TGTTTTAAGAAAAACAAT
7129305 CTTGAGTGAAAT
64 CTTGAGTGAAAT
* * * * *
7129317 AAATCTTCTTGTTTTGAGTAAAAGCTGTCTCAAGTGATACAAATTTTGCTTTAAGAAAAACAATC
1 AAATCTTCTTGTTTCGAGTAAAAACTGTCTCAAGTGAGACAAA-TCTGTTTTAAGAAAAACAATC
7129382 TTGAGTGAAAT
65 TTGAGTGAAAT
* * *
7129393 AAATCTTATTGTTTCGAGTAAAAACAGCCTCAAGTGAGACAAAGTCTGTTTTAAG-AAAACAATC
1 AAATCTTCTTGTTTCGAGTAAAAACTGTCTCAAGTGAGACAAA-TCTGTTTTAAGAAAAACAATC
** *
7129457 TCAAGTGAGAT
65 TTGAGTGAAAT
* *
7129468 AAATATTCTTGTTTCGAGTAAAAACTGCCTCAAGTGAGACAAAGTCTGTTTTAAG-AAAACAATC
1 AAATCTTCTTGTTTCGAGTAAAAACTGTCTCAAGTGAGACAAA-TCTGTTTTAAGAAAAACAATC
7129532 T
65 T
7129533 CAAGTGCGAT
Statistics
Matches: 316, Mismatches: 41, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
72 1 0.00
73 17 0.05
74 20 0.06
75 85 0.27
76 191 0.60
77 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (75 bp):
AAATCTTCTTGTTTCGAGTAAAAACTGTCTCAAGTGAGACAAATCTGTTTTAAGAAAAACAATCT
TGAGTGAAAT
Found at i:7129553 original size:37 final size:36
Alignment explanation
Indices: 7129276--7129558 Score: 126
Period size: 40 Copynumber: 7.6 Consensus size: 36
7129266 CGTCTCAAAC
* **
7129276 GAGACAAATCT-TGTTTTAAGAAAAACAATCTTGAGT
1 GAGATAAATCTCTGTTTTAAG-AAAACAATCTCAAGT
* * **
7129312 GAAATAAATCTTCTTGTTTTGAGTAAAAGCTGTCTCAAGT
1 GAGATAAATC-TC-TGTTTTAAG-AAAA-CAATCTCAAGT
* * * * **
7129352 GATACAAAT-TTTGCTTTAAGAAAAACAATCTTGAGT
1 GAGATAAATCTCTGTTTTAAG-AAAACAATCTCAAGT
* * ** **
7129388 GAAATAAATCTTATTGTTTCGAGTAAAAACAGCCTCAAGT
1 GAGATAAATC-T-CTGTTTTAAG--AAAACAATCTCAAGT
* *
7129428 GAGACAAA-GTCTGTTTTAAGAAAACAATCTCAAGT
1 GAGATAAATCTCTGTTTTAAGAAAACAATCTCAAGT
* ** *
7129463 GAGATAAATATTCTTGTTTCGAGTAAAA-ACTGCCTCAAGT
1 GAGATAAAT-CTC-TGTTTTAAG-AAAACAAT--CTCAAGT
* *
7129503 GAGACAAA-GTCTGTTTTAAGAAAACAATCTCAAGT
1 GAGATAAATCTCTGTTTTAAGAAAACAATCTCAAGT
* *
7129538 GCGATAAATCCTCTGTATTAA
1 GAGATAAAT-CTCTGTTTTAA
7129559 ATGAGACTAT
Statistics
Matches: 181, Mismatches: 49, Indels: 33
0.69 0.19 0.13
Matches are distributed among these distances:
35 33 0.18
36 26 0.14
37 39 0.22
38 14 0.08
39 23 0.13
40 46 0.25
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (36 bp):
GAGATAAATCTCTGTTTTAAGAAAACAATCTCAAGT
Found at i:7130915 original size:18 final size:18
Alignment explanation
Indices: 7130892--7130932 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7130882 TTCTCATCCC
7130892 TTTTTCTT-TGCTTTCTCT
1 TTTTTCTTCT-CTTTCTCT
*
7130910 TTTTTCTTCTTTTTCTCT
1 TTTTTCTTCTCTTTCTCT
7130928 TTTTT
1 TTTTT
7130933 TAATTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (18 bp):
TTTTTCTTCTCTTTCTCT
Found at i:7132382 original size:21 final size:19
Alignment explanation
Indices: 7132365--7132405 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7132355 ATCCAATTCG
7132365 TCATCAATCGCCTCCAATT
1 TCATCAATCGCCTCCAATT
**
7132384 TCATTTATCGCCTCCAATT
1 TCATCAATCGCCTCCAATT
7132403 TCA
1 TCA
7132406 GCTATCGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.34, G:0.05, T:0.37
Consensus pattern (19 bp):
TCATCAATCGCCTCCAATT
Found at i:7132411 original size:19 final size:19
Alignment explanation
Indices: 7132371--7132413 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
7132361 TTCGTCATCA
**
7132371 ATCGCCTCCAATTTCATTT
1 ATCGCCTCCAATTTCAGCT
7132390 ATCGCCTCCAATTTCAGCT
1 ATCGCCTCCAATTTCAGCT
7132409 ATCGC
1 ATCGC
7132414 TTTTCCATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.21, C:0.35, G:0.09, T:0.35
Consensus pattern (19 bp):
ATCGCCTCCAATTTCAGCT
Found at i:7134276 original size:29 final size:28
Alignment explanation
Indices: 7134211--7134278 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
7134201 AATAAAAGGA
*
7134211 ATATAATAATTTTTCCTAAGAATTTAAT
1 ATATAATAATTTTTCATAAGAATTTAAT
* *
7134239 ATTAAAATAATTTTT-ATATGATATTATAAT
1 A-TATAATAATTTTTCATAAGA-ATT-TAAT
7134269 ATATAATAAT
1 ATATAATAAT
7134279 ACAAGCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
28 5 0.15
29 23 0.70
30 5 0.15
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (28 bp):
ATATAATAATTTTTCATAAGAATTTAAT
Found at i:7136542 original size:21 final size:22
Alignment explanation
Indices: 7136490--7136542 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
7136480 ATTCATTTTT
*
7136490 TAAAAATA-AATCAAAATGCAT
1 TAAAAATAGAATCAAAATGCAA
*
7136511 TAAAAAT-GAAT-AAAATTCAA
1 TAAAAATAGAATCAAAATGCAA
7136531 TAAAAATAGAAT
1 TAAAAATAGAAT
7136543 GTAAAGATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (22 bp):
TAAAAATAGAATCAAAATGCAA
Found at i:7136672 original size:31 final size:30
Alignment explanation
Indices: 7136637--7136705 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
7136627 AAGAGGTGAT
7136637 ATTTTTT-AGCTTTACATTATATTTTTATTGA
1 ATTTTTTCAGCTTTA-ATTAT-TTTTTATTGA
** *
7136668 ATTTTATTCATTTTTAATTATTTTTTATTGC
1 ATTTT-TTCAGCTTTAATTATTTTTTATTGA
7136699 ATTTTTT
1 ATTTTTT
7136706 TAAAAAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
30 2 0.06
31 19 0.58
32 7 0.21
33 5 0.15
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.67
Consensus pattern (30 bp):
ATTTTTTCAGCTTTAATTATTTTTTATTGA
Found at i:7136682 original size:21 final size:22
Alignment explanation
Indices: 7136658--7136705 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
7136648 TTACATTATA
7136658 TTTTTATTGA-ATTTTATT-CAT
1 TTTTTATT-ATATTTTATTGCAT
* *
7136679 TTTTAATTATTTTTTATTGCAT
1 TTTTTATTATATTTTATTGCAT
7136701 TTTTT
1 TTTTT
7136706 TAAAAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 14 0.64
22 7 0.32
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (22 bp):
TTTTTATTATATTTTATTGCAT
Found at i:7140378 original size:31 final size:31
Alignment explanation
Indices: 7140340--7140414 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
7140330 CATGGAATTT
** * *
7140340 TATATTAATAAAATATGTTATGTCATAATAA
1 TATATTAATAAAATATGCCAAGTCATAAGAA
*
7140371 TATATTAATAGAATATGCCAAGTCATAAGAA
1 TATATTAATAAAATATGCCAAGTCATAAGAA
* *
7140402 AATATTAGTAAAA
1 TATATTAATAAAA
7140415 AAAGCCATGT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (31 bp):
TATATTAATAAAATATGCCAAGTCATAAGAA
Found at i:7140427 original size:31 final size:31
Alignment explanation
Indices: 7140341--7140427 Score: 75
Period size: 31 Copynumber: 2.8 Consensus size: 31
7140331 ATGGAATTTT
* * ** * *
7140341 ATATTAATAAAATATGTTATGTCATAATAAT
1 ATATTAATAAAAAAAGCCATGTCATAAGAAA
* * * *
7140372 ATATTAATAGAATATGCCAAGTCATAAGAAA
1 ATATTAATAAAAAAAGCCATGTCATAAGAAA
*
7140403 ATATTAGTAAAAAAAGCCATGTCAT
1 ATATTAATAAAAAAAGCCATGTCAT
7140428 GCTAGAGTGA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.32
Consensus pattern (31 bp):
ATATTAATAAAAAAAGCCATGTCATAAGAAA
Found at i:7148451 original size:65 final size:64
Alignment explanation
Indices: 7148376--7148584 Score: 246
Period size: 65 Copynumber: 3.2 Consensus size: 64
7148366 TGCACTAAGA
* *
7148376 GTGCAACGATGCATAAAATGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGCTTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATACCCTGAGTGCATCGATGCATGG-TTG
* *
7148441 GTGCATCGATGTATCAAATGCATTCGATGTTTTCATAAA-ACCCTGAGTGCATCGATGCATGGTA
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCA-AAATACCCTGAGTGCATCGATGCATGGT-
7148505 T-
63 TG
* * * *
7148506 GTGCATCGATGCATAAAATGCATTCGATGTTT-AATTTATTCCATG-GTTCATCGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAA--AATACCCTGAGTGCATCGATGCATGG-T
7148569 TG
63 TG
*
7148571 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
7148585 CACTTTGAAA
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 20 0.16
65 72 0.58
66 28 0.22
67 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATACCCTGAGTGCATCGATGCATGGTTG
Found at i:7151334 original size:45 final size:46
Alignment explanation
Indices: 7151268--7151374 Score: 148
Period size: 45 Copynumber: 2.3 Consensus size: 46
7151258 GGTGCACTAA
* *
7151268 GAGTGCAACGATGCATAAAATGCATTCGATG-TTTCA-AAATAGCCC-
1 GAGTGCATCGATGCATAAAATGCATTCAATGTTTTCATAAA-A-CCCT
*
7151313 GAGTGCATCGATGCATCAAATGCATTCAATGTTTTCATAAAACCCT
1 GAGTGCATCGATGCATAAAATGCATTCAATGTTTTCATAAAACCCT
7151359 GAGTGCATCGATGCAT
1 GAGTGCATCGATGCAT
7151375 GGTATGTGCA
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 31 0.55
46 22 0.39
47 3 0.05
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (46 bp):
GAGTGCATCGATGCATAAAATGCATTCAATGTTTTCATAAAACCCT
Found at i:7154228 original size:65 final size:64
Alignment explanation
Indices: 7154159--7154360 Score: 259
Period size: 65 Copynumber: 3.1 Consensus size: 64
7154149 AGAGTGCAAT
*
7154159 GATGCATAAAATGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGCTTGGTGCATC
1 GATGCATAAAATGCATTCGATGTTTCAAAATACCCTGAGTGCATCGATGCATGG-TTGGTGCATC
*
7154224 GATGCATCAAATGCATTCGATGTTTTCATAAA-ACCCTGAGTGCATCGATGCATGGTAT-GTGCA
1 GATGCATAAAATGCATTCGATG-TTTCA-AAATACCCTGAGTGCATCGATGCATGGT-TGGTGCA
7154287 TC
63 TC
* * *
7154289 GATGCATAAAATGCATTCGATGTTT-AATTTATTCCATG-GTGCATCGATGCATGGATTGGTGCA
1 GATGCATAAAATGCATTCGATGTTTCAA--AATACCCTGAGTGCATCGATGCATGG-TTGGTGCA
7154352 TC
63 TC
*
7154354 GGTGCAT
1 GATGCAT
7154361 CACTTTGAAA
Statistics
Matches: 122, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 21 0.17
65 68 0.56
66 28 0.23
67 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (64 bp):
GATGCATAAAATGCATTCGATGTTTCAAAATACCCTGAGTGCATCGATGCATGGTTGGTGCATC
Found at i:7154270 original size:130 final size:130
Alignment explanation
Indices: 7154126--7154362 Score: 322
Period size: 130 Copynumber: 1.8 Consensus size: 130
7154116 TGACCGTTGG
* *
7154126 ACCCTTAGTGCATCGGTGCACTAAG-A-GTGCAAT-GATGCATAAAATGCATTCGATGTTTCAAA
1 ACCCTGAGTGCATCGATGCA-T-AGTATGTGC-ATCGATGCATAAAATGCATTCGATGTTT-AAA
*
7154188 ATA-GCC-TGAGTGCATCGATGCATGGCTTGGTGCATCGATGCATCAAATGCATTCGATGTTTTC
62 ATATGCCATG-GTGCATCGATGCATGGATTGGTGCATCGATGCATCAAATGCATTCGATGTTTTC
7154251 ATAAA
126 ATAAA
* **
7154256 ACCCTGAGTGCATCGATGCATGGTATGTGCATCGATGCATAAAATGCATTCGATGTTTAATTTAT
1 ACCCTGAGTGCATCGATGCATAGTATGTGCATCGATGCATAAAATGCATTCGATGTTTAAAATAT
* *
7154321 TCCATGGTGCATCGATGCATGGATTGGTGCATCGGTGCATCA
66 GCCATGGTGCATCGATGCATGGATTGGTGCATCGATGCATCA
7154363 CTTTGAAAAA
Statistics
Matches: 94, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
128 1 0.01
129 8 0.09
130 83 0.88
131 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (130 bp):
ACCCTGAGTGCATCGATGCATAGTATGTGCATCGATGCATAAAATGCATTCGATGTTTAAAATAT
GCCATGGTGCATCGATGCATGGATTGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA
Found at i:7161476 original size:65 final size:66
Alignment explanation
Indices: 7161366--7161523 Score: 191
Period size: 66 Copynumber: 2.4 Consensus size: 66
7161356 GGTGCACTAA
* * * *
7161366 GAGTGCATCGTTGCACT--CTTAGTGCAACGATGCATAAAATGCATTCGATG-TTTCA-AAATAG
1 GAGTGCATCGATGCA-TGGCTTGGTGCATCGATGCATAAAATACATTCGATGTTTTCATAAA-A-
7161427 C-CT
63 CTCT
* *
7161430 GAGTGCATCGATGCATGGCTTGGTGCATCGATGCTTCAAATACATTCGATGTTTTCATAAAACTC
1 GAGTGCATCGATGCATGGCTTGGTGCATCGATGCATAAAATACATTCGATGTTTTCATAAAACTC
7161495 T
66 T
*
7161496 GAGTGCATCGATGCATGGATTGGTGCAT
1 GAGTGCATCGATGCATGGCTTGGTGCAT
7161524 TTGTGTATCA
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
63 1 0.01
64 14 0.17
65 29 0.35
66 35 0.43
67 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (66 bp):
GAGTGCATCGATGCATGGCTTGGTGCATCGATGCATAAAATACATTCGATGTTTTCATAAAACTC
T
Found at i:7169697 original size:113 final size:114
Alignment explanation
Indices: 7169390--7169707 Score: 315
Period size: 113 Copynumber: 2.8 Consensus size: 114
7169380 AGTTATTTTC
* * * * * *
7169390 ATTATGAACTCTTCCAATGAAATGTTGATACA-CTCCTTCTGTGATGGAATCGATCAAAGGTTCA
1 ATTATGAACTCTTCCAATGAAATGTTGATCCACCTCCTTCTATGATAGAATCAAT-AAAGATTAA
* *
7169454 ACAAGTTCCTCTCATTATGAACTTCTTCTCCTTCTTTGGATGAGTTCTTCTC
65 ACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCTTTGGATGAG-T-TTCTA
** * * ** * * * *
7169506 ATTATGAACTCTTGTATTAAAAATGAGGATCAACCTCCTTCTATGATTA-ATTTGAACAAAGATT
1 ATTATGAACTCTTCCAAT-GAAATGTTGATCCACCTCCTTCTATGA-TAGA-ATCAATAAAGATT
* *
7169570 GAACAAGTTCTTCTCATTGTGAACTTCTTCT-C-TCTTATCGGATGAG-TTCTA
63 AAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCTT-T-GGATGAGTTTCTA
* *
7169621 ATTATGAACTC-TCCACTGAAATGTTGATCCACCTCATTCTATGATAGAATCAAGTAAAGATTAA
1 ATTATGAACTCTTCCAATGAAATGTTGATCCACCTCCTTCTATGATAGAATCAA-TAAAGATTAA
7169685 ACAAGTTCTTCTCATTATGAACT
65 ACAAGTTCTTCTCATTATGAACT
7169708 CTCCATTGAA
Statistics
Matches: 162, Mismatches: 32, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
112 5 0.03
113 53 0.33
114 3 0.02
115 15 0.09
116 19 0.12
117 11 0.07
118 53 0.33
119 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.37
Consensus pattern (114 bp):
ATTATGAACTCTTCCAATGAAATGTTGATCCACCTCCTTCTATGATAGAATCAATAAAGATTAAA
CAAGTTCTTCTCATTATGAACTTCTTCTCCTTCTTTGGATGAGTTTCTA
Found at i:7169712 original size:77 final size:77
Alignment explanation
Indices: 7169616--7169784 Score: 214
Period size: 77 Copynumber: 2.2 Consensus size: 77
7169606 ATCGGATGAG
* * **
7169616 TTCTAATTATGAACTCTCCACTGAAATGTTGATCCACC-TCATTCTATGATAGAATCAAGTAAAG
1 TTCTCATTATGAACTCTCCACTGAAATGTTGATCCACCTTC-TTATATGATAGAATCAAACAAAG
*
7169680 ATTAAACAAGTTC
65 AGTAAACAAGTTC
* * * * *
7169693 TTCTCATTATGAACTCTCCATTGAATTGTTGATTCACCTTCTTATGTGATGGAATCAAACAAAGA
1 TTCTCATTATGAACTCTCCACTGAAATGTTGATCCACCTTCTTATATGATAGAATCAAACAAAGA
*
7169758 GTGAACAAGTTC
66 GTAAACAAGTTC
*
7169770 TTCTCATTATCAACT
1 TTCTCATTATGAACT
7169785 TCTTCTCACT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
77 77 0.97
78 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (77 bp):
TTCTCATTATGAACTCTCCACTGAAATGTTGATCCACCTTCTTATATGATAGAATCAAACAAAGA
GTAAACAAGTTC
Found at i:7169892 original size:117 final size:117
Alignment explanation
Indices: 7169687--7169959 Score: 361
Period size: 117 Copynumber: 2.3 Consensus size: 117
7169677 AAGATTAAAC
* * * * * *
7169687 AAGTTCTTCTCATTATGAACTCTCCA-TTGAATTGTTGATTCACCTTCTTATGTGATGGAATCAA
1 AAGTTCTTCTCATTATGAACTCTTCACTAGAAATGTTGATCCACCTCCTTATATGATGGAATCAA
7169751 ACAAAGAGTGAACAAGTTCTTCTCATTATCAACTTCTTCTCACTTATCAGAT
66 ACAAAGAGTGAACAAGTTCTTCTCATTATCAACTTCTTCTCACTTATCAGAT
* * * * *
7169803 AAGTTCTACTCATTATAAACTCTTCACTAGAAATGTTGATCCACCTCCTTCTATGATTGAATCGA
1 AAGTTCTTCTCATTATGAACTCTTCACTAGAAATGTTGATCCACCTCCTTATATGATGGAATCAA
* * * * *
7169868 ATAAAGATTGAACCAGTTCTTCTCATTATGAACTTCTTCTCTCTTATCAGAT
66 ACAAAGAGTGAACAAGTTCTTCTCATTATCAACTTCTTCTCACTTATCAGAT
* *
7169920 GAGTTCTTCTCATTATGAACTC-TCAACTGGAAATGTTGAT
1 AAGTTCTTCTCATTATGAACTCTTC-ACTAGAAATGTTGAT
7169960 TGGTTTGTCC
Statistics
Matches: 135, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
116 25 0.19
117 110 0.81
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (117 bp):
AAGTTCTTCTCATTATGAACTCTTCACTAGAAATGTTGATCCACCTCCTTATATGATGGAATCAA
ACAAAGAGTGAACAAGTTCTTCTCATTATCAACTTCTTCTCACTTATCAGAT
Found at i:7170892 original size:7 final size:7
Alignment explanation
Indices: 7170882--7170926 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
7170872 CGAACCTCTC
7170882 TTTTTC-
1 TTTTTCT
7170888 TTTTTC-
1 TTTTTCT
7170894 TTTTTCTT
1 TTTTTC-T
7170902 TTTCTTCT
1 TTT-TTCT
7170910 TTTTTCT
1 TTTTTCT
7170917 TTTTTCT
1 TTTTTCT
7170924 TTT
1 TTT
7170927 CATTGTTCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
6 12 0.33
7 14 0.39
8 7 0.19
9 3 0.08
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:7170935 original size:29 final size:28
Alignment explanation
Indices: 7170882--7170936 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
7170872 CGAACCTCTC
*
7170882 TTTTTCTTTTTCTTTTTCTTTTTCTTCT
1 TTTTTCTTTTTCTTTTTCTTGTTCTTCT
7170910 TTTTTCTTTTT-TCTTTTCATTGTTCTT
1 TTTTTCTTTTTCT-TTTTC-TTGTTCTT
7170937 TTTATTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 1 0.04
28 16 0.67
29 7 0.29
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (28 bp):
TTTTTCTTTTTCTTTTTCTTGTTCTTCT
Found at i:7170948 original size:6 final size:6
Alignment explanation
Indices: 7170880--7170945 Score: 66
Period size: 6 Copynumber: 11.2 Consensus size: 6
7170870 CTCGAACCTC
*
7170880 TCTTTT TCTTTT TCTTTT TCTTTT TC-TTC T-TTTT TCTTTT T-TCTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCT-TTT
* *
7170926 TCATTGT TCTTTT TATTTT T
1 TC-TTTT TCTTTT TCTTTT T
7170946 ATTCTTAGGC
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
5 7 0.14
6 38 0.76
7 4 0.08
8 1 0.02
ACGTcount: A:0.03, C:0.15, G:0.02, T:0.80
Consensus pattern (6 bp):
TCTTTT
Found at i:7174446 original size:7 final size:7
Alignment explanation
Indices: 7174434--7174463 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
7174424 TATTGGAATG
7174434 TAAAGAA
1 TAAAGAA
7174441 TAAAGAA
1 TAAAGAA
*
7174448 TATAGAA
1 TAAAGAA
7174455 TAAAGAA
1 TAAAGAA
7174462 TA
1 TA
7174464 TGATACAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (7 bp):
TAAAGAA
Found at i:7182609 original size:5 final size:5
Alignment explanation
Indices: 7182599--7182648 Score: 68
Period size: 5 Copynumber: 10.4 Consensus size: 5
7182589 AAAAATGTGA
* *
7182599 AAAAT AAAAT -AAA- CAAAT AAAAT AAAAT AAAAT AAAGT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
7182647 AA
1 AA
7182649 GAACACAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
4 6 0.15
5 34 0.85
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7182618 original size:13 final size:13
Alignment explanation
Indices: 7182600--7182624 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7182590 AAAATGTGAA
7182600 AAATAAAATAAAC
1 AAATAAAATAAAC
7182613 AAATAAAATAAA
1 AAATAAAATAAA
7182625 ATAAAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATAAAATAAAC
Found at i:7185147 original size:54 final size:54
Alignment explanation
Indices: 7185084--7185323 Score: 324
Period size: 54 Copynumber: 4.4 Consensus size: 54
7185074 ATAAGTTCGT
* * *
7185084 TGGGGTGCACACGTAGTGCTGATATGGTCGTTCATAAACATATTATGAATTACG
1 TGGGTTGCACACTTAGTGCTGATACGGTCGTTCATAAACATATTATGAATTACG
* **
7185138 TGGGTTGCACACTTAGTGCCT-ATACGGTCGTTCATAAACATATTGTGAATTTTG
1 TGGGTTGCACACTTAGTG-CTGATACGGTCGTTCATAAACATATTATGAATTACG
* * *
7185192 TGGGTTGCACACTTAGTG-TCGATACGGTCGTTCAAAAACTTATTATGAATTATG
1 TGGGTTGCACACTTAGTGCT-GATACGGTCGTTCATAAACATATTATGAATTACG
* *
7185246 TGGGTTGCACACTTAGTG-TCGATACGGTCGTTCATAAACATATTATGAATTCCA
1 TGGGTTGCACACTTAGTGCT-GATACGGTCGTTCATAAACATATTATGAATTACG
*
7185300 TGGGTTGCACACTTAGTGCCGATA
1 TGGGTTGCACACTTAGTGCTGATA
7185324 GTACACATAA
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
54 163 0.98
55 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (54 bp):
TGGGTTGCACACTTAGTGCTGATACGGTCGTTCATAAACATATTATGAATTACG
Found at i:7194009 original size:21 final size:20
Alignment explanation
Indices: 7193979--7194018 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
7193969 TTAGCCTCAA
*
7193979 TTCATTCAGTATCTATACTG
1 TTCATTCAGTATCGATACTG
7193999 TTCATCTCAGTATCGATACT
1 TTCAT-TCAGTATCGATACT
7194019 CAACCCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (20 bp):
TTCATTCAGTATCGATACTG
Found at i:7200195 original size:20 final size:20
Alignment explanation
Indices: 7200159--7200202 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7200149 GCGGACAACT
*
7200159 GACGGCGGCAGCAGACGGCG
1 GACGGCGGCAGCAGACGGCA
**
7200179 GACGGCGGCAGTGGACGGCA
1 GACGGCGGCAGCAGACGGCA
7200199 GACG
1 GACG
7200203 ACTGACGGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.50, T:0.02
Consensus pattern (20 bp):
GACGGCGGCAGCAGACGGCA
Found at i:7210072 original size:45 final size:45
Alignment explanation
Indices: 7210021--7210107 Score: 140
Period size: 45 Copynumber: 1.9 Consensus size: 45
7210011 TATGTATATA
*
7210021 TTTAATTGAAAGCAATAGTTTAATTCTTT-AAAAAATGAAAACGTG
1 TTTAATTGAAAACAATAGTTTAATT-TTTCAAAAAATGAAAACGTG
*
7210066 TTTAATTGAAAACAATAGTTTAATTTTTCAAAACATGAAAAC
1 TTTAATTGAAAACAATAGTTTAATTTTTCAAAAAATGAAAAC
7210108 ATTACATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 3 0.08
45 36 0.92
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (45 bp):
TTTAATTGAAAACAATAGTTTAATTTTTCAAAAAATGAAAACGTG
Found at i:7215962 original size:659 final size:658
Alignment explanation
Indices: 7214945--7216147 Score: 1725
Period size: 659 Copynumber: 1.8 Consensus size: 658
7214935 CACTCGAGCC
* * * * **
7214945 CCAAAATAACCTTGAGTACTGAAATGACCTAAATATCCACACGACTTACAATAAGTGAATGTCTT
1 CCAAAATAACCCTAAGTACTAAAATGACCTAAATACCCACACGACTTACAATAAGAAAATGTCTT
* * *
7215010 TGGTAGATCTTGGAATCACTGATAAACCTAAGTGTTGTATCGCCATTTAAGGTAAAGCACGACCC
66 TGGTAGATCTTAGAATCACTGATAAACCTAAGTATTGTATCGCCATTTAAGGTAAAGCACAACCC
* * * * * * *
7215075 AAGTATGTCGTTCATCCTGAATATTGTTTCCATACATAAATAAATTAAACACCATATGATTACAT
131 AAGTACGTCGTTCATCATGAATACTGGTGCCATAAATAAATAAATTAAACACCATATGAATACAT
* * * *
7215140 GTTTATCTTCTAAAGATATATTTGATGTTGATTATAAATGAGATCCGCTCAACTAGTGCAATCAA
196 ATTCATCTTCTAAAGATATATTTGATGTTGATTATAAATAAGATCCACTCAACTAGTGCAATCAA
* * * *
7215205 TACTAAGGAGTGAATATCTGTGAAATATCTCGACCCAAATAATTGGTAAGCATCGTAGTATTGGA
261 TACTAAGGACTAAATATCTGTGAAATATCTCAACCCAAATAATTGGTAAGCATCCTAGTATTGGA
* * * * * *
7215270 ATCTGATTAGTTTGACTTGACTCAAGTCTGATAACTTGATATAATCTTGAATACTATAAATCATT
326 ATCTAATTAATTTAACTTGACTCAAGTCTGATAACTCGATATAATCTTGAATACTACAAATCATC
* *
7215335 GCCCAACCCTTAATAGGTTAAATTACTAAGAATTTTCA-AAGAATCAAAATGTCTGAAATACCCC
391 GCCCAACCCTTAATAGGTTAAATTACTAAGAATTCT-ATAAGAATCAAAATGTCTAAAATACCCC
* * * * *
7215399 TAATTGTCTGAATAATGAAATCACTCTTGTTATGTATTAATCCTAAAATATTTTGACGTAAAGGT
455 TAATTGTCTGAATAA--AAATCACTATGGTTATGTATGAATCCTAAAATATTCTGACGTAAAGGC
*
7215464 TTCTGAATACTTTCC-GATGCATTTGATGCCTGAATATAAGTTCAGCAATTATTTTATAAAGTAA
518 TTCTGAATACTTTCCTGATGCACTTGATGCCTGAATATAAGTTCAGCAATTATTTTATAAAGTAA
7215528 TTAACATCATAATTCTTAGATTTTGATATTTCTCGTTACAATTCGAAACGTGGGATTAAGAAAAA
583 TTAACATCATAATTCTTAGATTTTGATATTTCTCGTTACAATTCGAAACGTGGGATTAAGAAAAA
7215593 GACTAGAATAA
648 GACTAGAATAA
* * *
7215604 CCAAAATAACCCTAAGTACTAAAATGACCTAAATACCCTCATGACTTACAATAAGAAAATGTTTT
1 CCAAAATAACCCTAAGTACTAAAATGACCTAAATACCCACACGACTTACAATAAGAAAATGTCTT
* * * * *
7215669 TGGTAGAT-TTCAGAATCACCT-ATAAACCTAAGTATTTTATCGTCATTTAAGGTGAATCATAAC
66 TGGTAGATCTT-AGAATCA-CTGATAAACCTAAGTATTGTATCGCCATTTAAGGTAAAGCACAAC
* *
7215732 CCAATTACGTCGTTCATCATGGATACTGGTGCCATAAATAAATAAATTAAACACCA-ATGGAATA
129 CCAAGTACGTCGTTCATCATGAATACTGGTGCCATAAATAAATAAATTAAACACCATAT-GAATA
* * * * *
7215796 CATATTCGTCTTCTAAAGATCTGTTTGATGTTGATTATAAATAAGATTCACTCAATTAGTGCAAT
193 CATATTCATCTTCTAAAGATATATTTGATGTTGATTATAAATAAGATCCACTCAACTAGTGCAAT
* * * * * *
7215861 -AAGTACTAAGGACTAAATATCTGTGAAGTATGTCAACTCAAATGATTGGTAAGTATCCTAGTGT
258 CAA-TACTAAGGACTAAATATCTGTGAAATATCTCAACCCAAATAATTGGTAAGCATCCTAGTAT
*
7215925 TGGAATTTAATTAATTTAACTTGACTCAAGTCTGATAACTCGATATAATCTTGAATACTACAAAT
322 TGGAATCTAATTAATTTAACTTGACTCAAGTCTGATAACTCGATATAATCTTGAATACTACAAAT
* *
7215990 CATCGCCCAACCCTTAATAGGTTAAATTACTAAGAATTCTATAAGAATCAAAATGTTTAAAATGC
387 CATCGCCCAACCCTTAATAGGTTAAATTACTAAGAATTCTATAAGAATCAAAATGTCTAAAATAC
* *
7216055 CCCTGATTGTCTGAATAAAAATCACTATGGTTATGTATGAATCCTAAATTATTCTGACGTAAAGG
452 CCCTAATTGTCTGAATAAAAATCACTATGGTTATGTATGAATCCTAAAATATTCTGACGTAAAGG
7216120 CTTCTGAATACTTTCCTGATGCACTTGA
517 CTTCTGAATACTTTCCTGATGCACTTGA
7216148 ATCCTTCATG
Statistics
Matches: 474, Mismatches: 64, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
657 57 0.12
658 17 0.04
659 398 0.84
660 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (658 bp):
CCAAAATAACCCTAAGTACTAAAATGACCTAAATACCCACACGACTTACAATAAGAAAATGTCTT
TGGTAGATCTTAGAATCACTGATAAACCTAAGTATTGTATCGCCATTTAAGGTAAAGCACAACCC
AAGTACGTCGTTCATCATGAATACTGGTGCCATAAATAAATAAATTAAACACCATATGAATACAT
ATTCATCTTCTAAAGATATATTTGATGTTGATTATAAATAAGATCCACTCAACTAGTGCAATCAA
TACTAAGGACTAAATATCTGTGAAATATCTCAACCCAAATAATTGGTAAGCATCCTAGTATTGGA
ATCTAATTAATTTAACTTGACTCAAGTCTGATAACTCGATATAATCTTGAATACTACAAATCATC
GCCCAACCCTTAATAGGTTAAATTACTAAGAATTCTATAAGAATCAAAATGTCTAAAATACCCCT
AATTGTCTGAATAAAAATCACTATGGTTATGTATGAATCCTAAAATATTCTGACGTAAAGGCTTC
TGAATACTTTCCTGATGCACTTGATGCCTGAATATAAGTTCAGCAATTATTTTATAAAGTAATTA
ACATCATAATTCTTAGATTTTGATATTTCTCGTTACAATTCGAAACGTGGGATTAAGAAAAAGAC
TAGAATAA
Found at i:7216461 original size:13 final size:13
Alignment explanation
Indices: 7216443--7216473 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
7216433 TGTTTCCTCT
7216443 TTTCTGATATTAC
1 TTTCTGATATTAC
7216456 TTTCTGATATTAC
1 TTTCTGATATTAC
7216469 TTTCT
1 TTTCT
7216474 TTTATATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (13 bp):
TTTCTGATATTAC
Found at i:7219165 original size:19 final size:19
Alignment explanation
Indices: 7219141--7219188 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
7219131 AACTAAATCG
7219141 CAATGCGATCGATAATTCC
1 CAATGCGATCGATAATTCC
*
7219160 CAATGCGATCGATAATTCG
1 CAATGCGATCGATAATTCC
*
7219179 CAACGCGATC
1 CAATGCGATC
7219189 TCCGGTATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (19 bp):
CAATGCGATCGATAATTCC
Found at i:7219302 original size:20 final size:20
Alignment explanation
Indices: 7219237--7219301 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
7219227 ACTTCGACTA
7219237 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
* * *
7219257 TCGCATTGCAATAGTCCA-AGT
1 TCGCATTGCGAT-TTACATA-T
*
7219278 TCGCGTTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
7219298 TCGC
1 TCGC
7219302 GCGTTGCTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
20 20 0.57
21 15 0.43
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:7219349 original size:21 final size:21
Alignment explanation
Indices: 7219325--7219395 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
7219315 TTCCAAGTTT
*
7219325 GTTGCGATAGTCGAAGTTCGC
1 GTTGCGATAGTCCAAGTTCGC
* *
7219346 GTTGCGATTTATTCCAAATT--C
1 GTTGCGA--TAGTCCAAGTTCGC
7219367 GTTGCGATAGTCCAAGTTCGC
1 GTTGCGATAGTCCAAGTTCGC
7219388 GTTGCGAT
1 GTTGCGAT
7219396 TTATTCCAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
19 9 0.22
21 24 0.59
23 8 0.20
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.34
Consensus pattern (21 bp):
GTTGCGATAGTCCAAGTTCGC
Found at i:7219350 original size:42 final size:42
Alignment explanation
Indices: 7219301--7219405 Score: 174
Period size: 42 Copynumber: 2.5 Consensus size: 42
7219291 TACATATTCG
* * *
7219301 CGCGTTGCTATTTATTCCAAGTTTGTTGCGATAGTCGAAGTT
1 CGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTT
*
7219343 CGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTT
1 CGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTT
7219385 CGCGTTGCGATTTATTCCAAG
1 CGCGTTGCGATTTATTCCAAG
7219406 AATTTTCTCT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (42 bp):
CGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTT
Found at i:7219386 original size:19 final size:19
Alignment explanation
Indices: 7219316--7219386 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 19
7219306 TGCTATTTAT
*
7219316 TCCAAGTTTGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
* *
7219335 TCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTT--CGTTGCGA--TAG
*
7219358 TCCAAATTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
7219377 TCCAAGTTCG
1 TCCAAGTTCG
7219387 CGTTGCGATT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
19 18 0.44
21 15 0.37
23 8 0.20
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (19 bp):
TCCAAGTTCGTTGCGATAG
Found at i:7219488 original size:5 final size:5
Alignment explanation
Indices: 7219478--7219525 Score: 51
Period size: 5 Copynumber: 9.6 Consensus size: 5
7219468 GACCACGACC
* * * * *
7219478 ACGAG ACGAG ACGAC CCAAG ACGAG ACGAG ACGAG ACAAG ACGGG ACG
1 ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACG
7219526 GCGGCGGCGG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.40, C:0.25, G:0.35, T:0.00
Consensus pattern (5 bp):
ACGAG
Found at i:7219503 original size:20 final size:20
Alignment explanation
Indices: 7219478--7219525 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7219468 GACCACGACC
*
7219478 ACGAGACGAGACGACCCAAG
1 ACGAGACGAGACGACACAAG
*
7219498 ACGAGACGAGACGAGACAAG
1 ACGAGACGAGACGACACAAG
*
7219518 ACGGGACG
1 ACGAGACG
7219526 GCGGCGGCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.25, G:0.35, T:0.00
Consensus pattern (20 bp):
ACGAGACGAGACGACACAAG
Found at i:7220159 original size:21 final size:21
Alignment explanation
Indices: 7220107--7220167 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
7220097 CGTTGCGATT
*
7220107 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAATGCGAAC
*
7220126 TTGGAATAAATCGCAATGCGAAC
1 TTGGACT--ATCGCAATGCGAAC
*
7220149 TTGGACTATCGCATTGCGA
1 TTGGACTATCGCAATGCGA
7220168 TTTACATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 6 0.18
21 18 0.53
23 10 0.29
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (21 bp):
TTGGACTATCGCAATGCGAAC
Found at i:7220182 original size:20 final size:20
Alignment explanation
Indices: 7220157--7220229 Score: 96
Period size: 20 Copynumber: 3.6 Consensus size: 20
7220147 ACTTGGACTA
7220157 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
7220177 TCGCATTGCGATAGT-CGACTA-
1 TCGCATTGCGAT-TTAC-A-TAT
7220198 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
7220218 TCGCATTGCGAT
1 TCGCATTGCGAT
7220230 AGTCCAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
19 2 0.04
20 27 0.59
21 15 0.33
22 2 0.04
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:7220197 original size:41 final size:42
Alignment explanation
Indices: 7220152--7220250 Score: 166
Period size: 41 Copynumber: 2.4 Consensus size: 42
7220142 TGCGAACTTG
7220152 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGT-C
1 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCC
7220193 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCC
1 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCC
* *
7220235 AAGT-TCGCATTGCGAT
1 GACTATCGCATTGCGAT
7220251 AGTCAAAGTT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
41 52 0.95
42 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (42 bp):
GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCC
Found at i:7220201 original size:62 final size:62
Alignment explanation
Indices: 7220135--7220254 Score: 140
Period size: 62 Copynumber: 1.9 Consensus size: 62
7220125 TTTGGAATAA
*
7220135 ATCGCAATGCGAACTTGGAC-TA-TCGCATTGCGAT-TTACATA-TTCGCATTGCGATAGTCGAC
1 ATCGCAATGCG-A-TT-GACATATTCGCATTGCGATAGTACA-AGTTCGCATTGCGATAGTCGAC
7220196 T
62 T
* * *
7220197 ATCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTC
1 ATCGCAATGCGATTGACATATTCGCATTGCGATAGTACAAGTTCGCATTGCGATAGTC
7220255 AAAGTTCGCG
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
59 2 0.04
60 4 0.08
61 14 0.28
62 30 0.60
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (62 bp):
ATCGCAATGCGATTGACATATTCGCATTGCGATAGTACAAGTTCGCATTGCGATAGTCGACT
Found at i:7220203 original size:21 final size:21
Alignment explanation
Indices: 7220152--7220254 Score: 76
Period size: 21 Copynumber: 5.0 Consensus size: 21
7220142 TGCGAACTTG
7220152 GACTATCGCATTGCGAT--T-
1 GACTATCGCATTGCGATAGTC
*
7220170 TACATATTCGCATTGCGATAGTC
1 GAC-TA-TCGCATTGCGATAGTC
7220193 GACTATCGCATTGCGAT--T-
1 GACTATCGCATTGCGATAGTC
*
7220211 TACATATTCGCATTGCGATAGTCC
1 GAC-TA-TCGCATTGCGATAGT-C
* *
7220235 AAGT-TCGCATTGCGATAGTC
1 GACTATCGCATTGCGATAGTC
7220255 AAAGTTCGCG
Statistics
Matches: 69, Mismatches: 5, Indels: 20
0.73 0.05 0.21
Matches are distributed among these distances:
18 4 0.06
19 5 0.07
20 25 0.36
21 27 0.39
22 4 0.06
23 3 0.04
24 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (21 bp):
GACTATCGCATTGCGATAGTC
Found at i:7220259 original size:21 final size:21
Alignment explanation
Indices: 7220176--7220270 Score: 97
Period size: 21 Copynumber: 4.6 Consensus size: 21
7220166 GATTTACATA
* *
7220176 TTCGCATTGCGATAGTC-GAC
1 TTCGCATTGCGATAGTCAAAG
* *
7220196 TATCGCATTGCGAT-TTACATA-
1 T-TCGCATTGCGATAGT-CAAAG
*
7220217 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCAAAG
7220238 TTCGCATTGCGATAGTCAAAG
1 TTCGCATTGCGATAGTCAAAG
*
7220259 TTCGCGTTGCGA
1 TTCGCATTGCGA
7220271 ATCTGGAAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
20 16 0.25
21 46 0.73
22 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCAAAG
Found at i:7223647 original size:20 final size:20
Alignment explanation
Indices: 7223618--7223655 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7223608 TTCTGAAATA
*
7223618 ACAGTGTCGATACTGTTCTT
1 ACAGTATCGATACTGTTCTT
7223638 ACAGTATCGATACTGTTC
1 ACAGTATCGATACTGTTC
7223656 ATATTGTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (20 bp):
ACAGTATCGATACTGTTCTT
Found at i:7223670 original size:20 final size:20
Alignment explanation
Indices: 7223627--7223670 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7223617 AACAGTGTCG
* *
7223627 ATACTGTTCTTACAGTATCG
1 ATACTGTTCATACAGTATCA
**
7223647 ATACTGTTCATATTGTATCA
1 ATACTGTTCATACAGTATCA
7223667 ATAC
1 ATAC
7223671 CAAAGTTAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (20 bp):
ATACTGTTCATACAGTATCA
Found at i:7223749 original size:18 final size:18
Alignment explanation
Indices: 7223722--7223756 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7223712 TTCCATAATG
*
7223722 CAAAATGGTACTGATACC
1 CAAAAGGGTACTGATACC
7223740 CAAAAGGGTACTGATAC
1 CAAAAGGGTACTGATAC
7223757 TACTTTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (18 bp):
CAAAAGGGTACTGATACC
Found at i:7227612 original size:103 final size:103
Alignment explanation
Indices: 7227284--7227604 Score: 570
Period size: 103 Copynumber: 3.1 Consensus size: 103
7227274 GTAGAGGGTC
* *
7227284 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
*
7227349 TTGATCCTTTGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
7227387 TATGTGGTCCTTCGTGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
7227452 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
* * *
7227490 TATGTGGTTCTTCGGGACATATATGTATTCTTTTGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
*
7227555 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
7227593 TATGTGGTCCTT
1 TATGTGGTCCTT
7227605 ATGGACATTA
Statistics
Matches: 208, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 208 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:7227654 original size:23 final size:23
Alignment explanation
Indices: 7227623--7227672 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
7227613 TATTATAGGT
7227623 CACTACGGTGCAATTCTACGCGG
1 CACTACGGTGCAATTCTACGCGG
* *
7227646 CACTCCGGTGCAATTCTACGTGG
1 CACTACGGTGCAATTCTACGCGG
7227669 CACT
1 CACT
7227673 TAGGTGTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (23 bp):
CACTACGGTGCAATTCTACGCGG
Found at i:7227678 original size:23 final size:23
Alignment explanation
Indices: 7227629--7227683 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
7227619 AGGTCACTAC
*
7227629 GGTGCAATTCTACGCGGCACTCC
1 GGTGCAATTCTACGCGGCACTCA
* *
7227652 GGTGCAATTCTACGTGGCACTTA
1 GGTGCAATTCTACGCGGCACTCA
*
7227675 GGTGTAATT
1 GGTGCAATT
7227684 ATATGAGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (23 bp):
GGTGCAATTCTACGCGGCACTCA
Found at i:7233902 original size:64 final size:63
Alignment explanation
Indices: 7233798--7233916 Score: 141
Period size: 64 Copynumber: 1.9 Consensus size: 63
7233788 TTGTTTAAGG
* **
7233798 TGCATCGATGCACATGAAGTGCATCGATGCATTAATTTAAAAAGAAAACATCGAATGTCATCGA
1 TGCATCGATGCACAAGAAGTGCATCGATGCACCAATTTAAAAA-AAAACATCGAATGTCATCGA
* * * * *
7233862 TGCATCGATGCATAAGGAGTGCATCGATGCACCCCA-TTAAATACAAACATCGAAT
1 TGCATCGATGCACAAGAAGTGCATCGATGCA-CCAATTTAAAAAAAAACATCGAAT
7233917 AAGATTTATG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
63 11 0.24
64 34 0.74
65 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (63 bp):
TGCATCGATGCACAAGAAGTGCATCGATGCACCAATTTAAAAAAAAACATCGAATGTCATCGA
Found at i:7234719 original size:103 final size:103
Alignment explanation
Indices: 7234391--7234711 Score: 588
Period size: 103 Copynumber: 3.1 Consensus size: 103
7234381 GTAGAGGGTC
* * *
7234391 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGGTGTGAGGTTTGTTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
7234456 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
7234494 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
7234559 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
* *
7234597 TATGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
*
7234662 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
7234700 TATGTGGTCCTT
1 TATGTGGTCCTT
7234712 ATGGACATTA
Statistics
Matches: 212, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 212 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:7234755 original size:23 final size:22
Alignment explanation
Indices: 7234728--7234790 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 22
7234718 ATTATTATAT
7234728 GGCACTATGGTGCAATTCTACGC
1 GGCACT-TGGTGCAATTCTACGC
* * *
7234751 GGCACTCCT-TTGTAATTCTACGT
1 GGCACT--TGGTGCAATTCTACGC
7234774 GGCACTTAGGTGCAATT
1 GGCACTT-GGTGCAATT
7234791 ATATGAGCTG
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
21 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (22 bp):
GGCACTTGGTGCAATTCTACGC
Found at i:7235028 original size:14 final size:15
Alignment explanation
Indices: 7235003--7235031 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7234993 TACTTTATAT
7235003 TTATTGATATTATTA
1 TTATTGATATTATTA
7235018 TTATT-ATATTATTA
1 TTATTGATATTATTA
7235032 CCTCACTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TTATTGATATTATTA
Found at i:7236753 original size:20 final size:21
Alignment explanation
Indices: 7236728--7236767 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
7236718 CTTTGTATAG
7236728 TAGTATCGATACCAT-AGGCA
1 TAGTATCGATACCATCAGGCA
7236748 TAGTATCGATACCATCAGGC
1 TAGTATCGATACCATCAGGC
7236768 CCCAACGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (21 bp):
TAGTATCGATACCATCAGGCA
Found at i:7239516 original size:40 final size:41
Alignment explanation
Indices: 7239461--7239844 Score: 292
Period size: 41 Copynumber: 9.4 Consensus size: 41
7239451 AAAAAACCTA
*
7239461 ACTTTAGAGGCGTTTGTATACAAACGCCGCAATAGA-TCTT
1 ACTTTAGTGGCGTTTGTATACAAACGCCGCAATAGACTCTT
* * **
7239501 ACTTTAGTGGCGTTTG--T--AAACGCTGCTAA-AGATTAGT
1 ACTTTAGTGGCGTTTGTATACAAACGCCGC-AATAGACTCTT
* * *
7239538 A-TTGTAGTGGCGTTTTTATACAAACGCCGGTAA-AGAATCGTT
1 ACTT-TAGTGGCGTTTGTATACAAACGCC-GCAATAGACTC-TT
* * *
7239580 -CTTTAGGGGCGTTTTTATACAAACGCCGCTAA-AGACTCGT
1 ACTTTAGTGGCGTTTGTATACAAACGCCGC-AATAGACTCTT
* * * *
7239620 ACTTTAGTGGCGTTTTTATA-AAAGCGCTGCTATA-ACTCAT
1 ACTTTAGTGGCGTTTGTATACAAA-CGCCGCAATAGACTCTT
* * * * * * *
7239660 ACTTTACTGGCGTTTTTATAAAAATGCTGCTATA-ACTCAT
1 ACTTTAGTGGCGTTTGTATACAAACGCCGCAATAGACTCTT
* * *
7239700 ACTTTAGTGGCGTTTTTGTTTACAAACGCCGCTATAGACTCGT
1 ACTTTAGTGGCG--TTTGTATACAAACGCCGCAATAGACTCTT
* * *
7239743 ACTTTAGTGGCGTTTTTGTTTACAAACGTCGCTATAGACT-TGT
1 ACTTTAGTGGCG--TTTGTATACAAACGCCGCAATAGACTCT-T
* * *
7239786 ACTTTAGTGGCGTTTTTATACAAACGCCGCAAAAGACTCGT
1 ACTTTAGTGGCGTTTGTATACAAACGCCGCAATAGACTCTT
7239827 ACTTTAGTGGCGTTTGTA
1 ACTTTAGTGGCGTTTGTA
7239845 CCGCAAATTT
Statistics
Matches: 288, Mismatches: 36, Indels: 39
0.79 0.10 0.11
Matches are distributed among these distances:
36 13 0.05
37 16 0.06
38 1 0.00
39 1 0.00
40 71 0.25
41 108 0.38
42 21 0.07
43 57 0.20
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (41 bp):
ACTTTAGTGGCGTTTGTATACAAACGCCGCAATAGACTCTT
Found at i:7241989 original size:36 final size:38
Alignment explanation
Indices: 7241949--7242050 Score: 118
Period size: 36 Copynumber: 2.7 Consensus size: 38
7241939 AAATATAATC
*
7241949 TAAAATGTTATTTTTTATAATATTTTCAGTT-G-AATA
1 TAAAATGTTATTTTTTATAATATTTTCAGTTGGTAACA
* * * *
7241985 TAAAATATTGTTTTTTATAACATTTTTAGTTGGTAACA
1 TAAAATGTTATTTTTTATAATATTTTCAGTTGGTAACA
*
7242023 TAAAATGTTATCTTTTTCGTAATATTTT
1 TAAAATGTTAT-TTTTT-ATAATATTTT
7242051 TATTTAACCG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
36 27 0.51
37 1 0.02
38 12 0.23
39 5 0.09
40 8 0.15
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (38 bp):
TAAAATGTTATTTTTTATAATATTTTCAGTTGGTAACA
Found at i:7242904 original size:351 final size:351
Alignment explanation
Indices: 7242256--7242932 Score: 1210
Period size: 351 Copynumber: 1.9 Consensus size: 351
7242246 GTTACCATAT
*
7242256 CTAATCTGGATTTTAATTACTTGGGTTATTTTACTTTGATCTTAGGTTCAACCTTGTGTTGGTGT
1 CTAATCTGGATTTTAATTACTTGGGTTATTGTACTTTGATCTTAGGTTCAACCTTGTGTTGGTGT
* *
7242321 TTGGAGTAATAAATGCACATCAAAGTATGGAATAAGACGGCCTTTTATCCTTGCTGGATCACTCA
66 TTGGAGTAATAAATGCACATCAAAGTATGGAAGAAGACGGCCTTTTATCCTTGATGGATCACTCA
* *
7242386 TGATCTCTGTTGTTGTAAGCATTGAAGTCTTACATGATTCATTCTTATATAATATGTTTCTGTGT
131 TGATCTCTGTTGCTGTAAGCATTGAAGTCTTACATGATTCATTCTTATATAATAGGTTTCTGTGT
* *
7242451 TTTATATCTGCTAAACTGAGTTTTGCATTAGGTGATAGTAATCGGGTTTTCTGCAGATGTTGGAT
196 TTTATATATGCTAAACTGAGTTTTGCATTAGGTGATAGTAACCGGGTTTTCTGCAGATGTTGGAT
*
7242516 ACATTTTAGGTGATACAAGAGAGCATTGCAGGTATTCATTCCTGCTTTGATTTCTTCTCAGCTCT
261 ACATTTTAGGTGATACAACAGAGCATTGCAGGTATTCATTCCTGCTTTGATTTCTTCTCAGCTCT
7242581 TGAACTATGGCGGCGTTTTATATCTG
326 TGAACTATGGCGGCGTTTTATATCTG
*
7242607 CTAATCTGGATTTTAATTATTTGGGTTATTGTACTTTGATCTTAGGTTCAACCTTGTGTTGGTGT
1 CTAATCTGGATTTTAATTACTTGGGTTATTGTACTTTGATCTTAGGTTCAACCTTGTGTTGGTGT
* *
7242672 TTGGAGTGATAAATGCACATCAAAGTATGGAAGGAGACGGCCTTTTATCCTTGATGGATCACTCA
66 TTGGAGTAATAAATGCACATCAAAGTATGGAAGAAGACGGCCTTTTATCCTTGATGGATCACTCA
* *
7242737 TGATCTCTGTTGCTGTAAGCATTGAAGTCTTACATGATTCGTTCTTATATACTAGGTTTCTGTGT
131 TGATCTCTGTTGCTGTAAGCATTGAAGTCTTACATGATTCATTCTTATATAATAGGTTTCTGTGT
*
7242802 TTTATATATGCTAAATTGAGTTTTGCATTAGGTGATAGTAACCGGGTTTTCTGCAGATGTTGGAT
196 TTTATATATGCTAAACTGAGTTTTGCATTAGGTGATAGTAACCGGGTTTTCTGCAGATGTTGGAT
* *
7242867 ACATTTTAGGTGATACAACAGAGCATTGCATGTATTCATTCCTGCTTTGATTTCTTCTTAGCTCT
261 ACATTTTAGGTGATACAACAGAGCATTGCAGGTATTCATTCCTGCTTTGATTTCTTCTCAGCTCT
7242932 T
326 T
7242933 ATAGTCCCTC
Statistics
Matches: 310, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
351 310 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (351 bp):
CTAATCTGGATTTTAATTACTTGGGTTATTGTACTTTGATCTTAGGTTCAACCTTGTGTTGGTGT
TTGGAGTAATAAATGCACATCAAAGTATGGAAGAAGACGGCCTTTTATCCTTGATGGATCACTCA
TGATCTCTGTTGCTGTAAGCATTGAAGTCTTACATGATTCATTCTTATATAATAGGTTTCTGTGT
TTTATATATGCTAAACTGAGTTTTGCATTAGGTGATAGTAACCGGGTTTTCTGCAGATGTTGGAT
ACATTTTAGGTGATACAACAGAGCATTGCAGGTATTCATTCCTGCTTTGATTTCTTCTCAGCTCT
TGAACTATGGCGGCGTTTTATATCTG
Found at i:7244021 original size:43 final size:43
Alignment explanation
Indices: 7243957--7244323 Score: 311
Period size: 43 Copynumber: 8.6 Consensus size: 43
7243947 AAGGTAATTA
* * *
7243957 GCGGCGTTTGTATCCAAAAACGCCGCTATAAGTCTGACTTTTT
1 GCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGACATTTT
* * *
7244000 GCAGCGTTTGTGTTCAAAAACGCCGTTATAGGTCTGACATTTT
1 GCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGACATTTT
* * *
7244043 GCGGCGTTTGTGTTCAAAAATGCCGTTATAGGTCTGACATTTT
1 GCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGACATTTT
* *
7244086 GCGGCGTTTGTGTCCAAAAACGCCACTATAGGTCTGACTTTTT
1 GCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGACATTTT
* * * * * *
7244129 ACGACGTTTGT-TCTAAACACGCTAG-TATAGGTCTTATC-TTTT
1 GCGGCGTTTGTGTCCAAAAACGC-CGCTATAGGTCTGA-CATTTT
* ** * *
7244171 GCGGCGTTT-TCTAGGAAAAACGCCGCTATAGATCTGACCTTTT
1 GCGGCGTTTGTGT-CCAAAAACGCCGCTATAGGTCTGACATTTT
** * *
7244214 GCGGCGTTT-T-TCCTAGAAAA-GCCGCTATATATCATAACTTTTT
1 GCGGCGTTTGTGTCC-A-AAAACGCCGCTATAGGTC-TGACATTTT
* * * * *
7244257 ACGGCGTTTAT-TCCAAAAACGCCGCTATAGATATCGACCTTTT
1 GCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCT-GACATTTT
* *
7244300 GCGGCGTTTGT-TCAAAAAATGCCG
1 GCGGCGTTTGTGTCCAAAAACGCCG
7244324 TAATAGATAT
Statistics
Matches: 270, Mismatches: 42, Indels: 24
0.80 0.12 0.07
Matches are distributed among these distances:
41 1 0.00
42 52 0.19
43 213 0.79
44 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (43 bp):
GCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGACATTTT
Found at i:7244318 original size:128 final size:123
Alignment explanation
Indices: 7243957--7244353 Score: 329
Period size: 128 Copynumber: 3.1 Consensus size: 123
7243947 AAGGTAATTA
* * * * *
7243957 GCGGCGTTTGTATCCAAAAACGCCGCTATA-AGTCTGACTTTTTGC-AGCGTTTGTGTTCAAAAA
1 GCGGCGTTT-T-TCCAAAAACGCCACTATAGA-TCTAACTTTTTACGA-CGTTTAT-TCCAAAAA
* * *
7244020 CGCCGTTATAGGTCTGACATTTTGCGGCGTTTGTGTTC-AAAAATGCCGTTATAGGTCTGACATT
61 CGCCG-TATAGGTCTGACCTTTTGCGGCG-TT-TGTTCAAAAAATGCCG-TATAGATCTGACCTT
7244084 TT
122 TT
* * * * *
7244086 GCGGCGTTTGTGTCCAAAAACGCCACTATAGGTCTGACTTTTTACGACGTTTGTTCTAAACACGC
1 GCGGCGTTT-T-TCCAAAAACGCCACTATAGATCTAACTTTTTACGACGTTTATTCCAAAAACGC
* * * *
7244151 TAGTATAGGTCTTATCTTTTGCGGCG-TT-TTCTAGGAAAAACGCCGCTATAGATCTGACCTTTT
64 -CGTATAGGTCTGACCTTTTGCGGCGTTTGTTC-A--AAAAATGCCG-TATAGATCTGACCTTTT
* * *
7244214 GCGGCGTTTTTCCTAGAAAA-GCCGCTATATATCATAACTTTTTACGGCGTTTATTCCAAAAACG
1 GCGGCGTTTTTCC-A-AAAACGCCACTATAGATC-TAACTTTTTACGACGTTTATTCCAAAAACG
* * * *
7244278 CCGCTATAGATATCGACCTTTTGCGGCGTTTGTTCAAAAAATGCCGTAATAGATATTGACCTATT
63 CCG-TATAGGTCT-GACCTTTTGCGGCGTTTGTTCAAAAAATGCCGT-ATAGAT-CTGACCTTTT
7244343 GCGGCGTTTTT
1 GCGGCGTTTTT
7244354 TGTTCTCAAA
Statistics
Matches: 221, Mismatches: 31, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
124 3 0.01
125 1 0.00
126 4 0.02
127 14 0.06
128 113 0.51
129 79 0.36
130 4 0.02
131 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (123 bp):
GCGGCGTTTTTCCAAAAACGCCACTATAGATCTAACTTTTTACGACGTTTATTCCAAAAACGCCG
TATAGGTCTGACCTTTTGCGGCGTTTGTTCAAAAAATGCCGTATAGATCTGACCTTTT
Found at i:7244330 original size:43 final size:43
Alignment explanation
Indices: 7244186--7244351 Score: 162
Period size: 43 Copynumber: 3.9 Consensus size: 43
7244176 GTTTTCTAGG
*
7244186 AAAAACGCCGCTATAGATCT-GACCTTTTGCGGCGTTT-TTCCTA
1 AAAAACGCCGCTATAGATATCGACCTTTTGCGGCGTTTATT-C-A
* * * * * *
7244229 GAAAA-GCCGCTATATATCAT-AACTTTTTACGGCGTTTATTCC
1 AAAAACGCCGCTATAGAT-ATCGACCTTTTGCGGCGTTTATTCA
*
7244271 AAAAACGCCGCTATAGATATCGACCTTTTGCGGCGTTTGTTCA
1 AAAAACGCCGCTATAGATATCGACCTTTTGCGGCGTTTATTCA
* * *
7244314 AAAAATGCCG-TAATAGATATTGACCTATTGCGGCGTTT
1 AAAAACGCCGCT-ATAGATATCGACCTTTTGCGGCGTTT
7244352 TTTGTTCTCA
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 18 0.18
43 81 0.80
44 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (43 bp):
AAAAACGCCGCTATAGATATCGACCTTTTGCGGCGTTTATTCA
Found at i:7251817 original size:61 final size:59
Alignment explanation
Indices: 7251725--7251876 Score: 139
Period size: 60 Copynumber: 2.5 Consensus size: 59
7251715 GTATATACAT
* * * *
7251725 ATAGTTTGGGATAAAATTGGAATATTTAAAAAGTCTGATTAAC-AATTTAGAATGA-AGGTC
1 ATAGTTTGGGATGAAATTGAAATATTCAAAAA-TCTGA-GAACTAATTTAGAATGATA-GTC
* * *
7251785 ATAGTTTGGGGATGAAATTGAAATGTTCAAAAATTTGAGGACTAATTTAGAATGATAGTC
1 ATAGTTT-GGGATGAAATTGAAATATTCAAAAATCTGAGAACTAATTTAGAATGATAGTC
* * *
7251845 ATA-TCTTAGGGATGAAATAGAAACATTTAAAA
1 ATAGT-TT-GGGATGAAATTGAAATATTCAAAA
7251877 GTTTAGAGTC
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
59 3 0.04
60 51 0.67
61 22 0.29
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.32
Consensus pattern (59 bp):
ATAGTTTGGGATGAAATTGAAATATTCAAAAATCTGAGAACTAATTTAGAATGATAGTC
Found at i:7255831 original size:17 final size:15
Alignment explanation
Indices: 7255818--7255861 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 15
7255808 ATATATTTAA
7255818 AATATAAATTTATTT
1 AATATAAATTTATTT
7255833 -ATATAAATTTTATTT
1 AATATAAA-TTTATTT
7255848 ATATATTAAATTTA
1 A-ATA-TAAATTTA
7255862 ATTCACATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.28
15 7 0.28
17 7 0.28
18 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATATAAATTTATTT
Found at i:7255836 original size:14 final size:15
Alignment explanation
Indices: 7255819--7255852 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
7255809 TATATTTAAA
7255819 ATATAAA-TTTATTT
1 ATATAAATTTTATTT
7255833 ATATAAATTTTATTT
1 ATATAAATTTTATTT
7255848 ATATA
1 ATATA
7255853 TTAAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATATAAATTTTATTT
Found at i:7255849 original size:19 final size:18
Alignment explanation
Indices: 7255825--7255860 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7255815 TAAAATATAA
*
7255825 ATTTATTTATATAAATTTT
1 ATTTATATAT-TAAATTTT
7255844 ATTTATATATTAAATTT
1 ATTTATATATTAAATTT
7255861 AATTCACATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTATATATTAAATTTT
Found at i:7255896 original size:10 final size:11
Alignment explanation
Indices: 7255874--7255902 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
7255864 TCACATTTTT
7255874 ATATATTTAAA
1 ATATATTTAAA
7255885 ATATATTT-AA
1 ATATATTTAAA
7255895 ATATATTT
1 ATATATTT
7255903 TATCTTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
ATATATTTAAA
Found at i:7256021 original size:38 final size:38
Alignment explanation
Indices: 7255930--7256042 Score: 167
Period size: 38 Copynumber: 3.0 Consensus size: 38
7255920 TAAAAAAAAT
*
7255930 AAAAAAATA-TTTTATTTTATATATATTTAAAATATAATG
1 AAAAATATATTTTTATTTT-TATATATTTAAAATAT-ATG
*
7255969 AAAAATATATTTTTATTTTTATACATTTAAAATATATG
1 AAAAATATATTTTTATTTTTATATATTTAAAATATATG
*
7256007 GAAAATATATTTTTATTTTTATATATTT-AAATATAT
1 AAAAATATATTTTTATTTTTATATATTTAAAATATAT
7256043 TTTATCTTAG
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
37 8 0.12
38 29 0.42
39 23 0.33
40 9 0.13
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (38 bp):
AAAAATATATTTTTATTTTTATATATTTAAAATATATG
Found at i:7257019 original size:16 final size:17
Alignment explanation
Indices: 7256998--7257031 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7256988 ACATATTTTT
*
7256998 ATTTAATATA-AAAATA
1 ATTTAAAATATAAAATA
7257014 ATTTAAAATATAAAATA
1 ATTTAAAATATAAAATA
7257031 A
1 A
7257032 AAACAGAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTTAAAATATAAAATA
Found at i:7263123 original size:117 final size:117
Alignment explanation
Indices: 7262900--7263201 Score: 430
Period size: 117 Copynumber: 2.6 Consensus size: 117
7262890 TTTTATATAT
* * * **
7262900 TTCCCC-GAAACATACACCTACCTGCACACCAGTAAAGACTTACCCTAAGCACGA-AGCTGAGGA
1 TTCCCCAGAACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCAC-ACAGCAAAGGA
* * * *
7262963 GCCTGCAGTAATAACGTCTCCATCCAGTCGCTTCTATAACTACAATATGTAGG
65 GCCTGCAGTAATAACGTCCCCATCCAGTCACTCCAATAACTACAATATGTAGG
*
7263016 TTCCCCA-ATACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACACAACAAAGGA
1 TTCCCCAGA-ACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGA
* ** *
7263080 GCCTGCAGTAATAACTTCCCCATCCAGTCACTCCAATCGCTACAATGTGTAGG
65 GCCTGCAGTAATAACGTCCCCATCCAGTCACTCCAATAACTACAATATGTAGG
*
7263133 TTCCCCAGAACCATACACCCACCTGCACACCAGTAAGGACTTACCCTGAGCACACAGCAAAGGAG
1 TTCCCCAGAACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGAG
7263198 CCTG
66 CCTG
7263202 AAATACTTCC
Statistics
Matches: 166, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
116 8 0.05
117 157 0.95
118 1 0.01
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.19
Consensus pattern (117 bp):
TTCCCCAGAACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGAG
CCTGCAGTAATAACGTCCCCATCCAGTCACTCCAATAACTACAATATGTAGG
Found at i:7264258 original size:29 final size:29
Alignment explanation
Indices: 7264153--7264251 Score: 164
Period size: 29 Copynumber: 3.4 Consensus size: 29
7264143 TTTTTAAAAT
*
7264153 AATTACCAAAATAGCACCTTTTCGAATTA
1 AATTCCCAAAATAGCACCTTTTCGAATTA
7264182 AATTCCCAAAATAGCACCTTTTCGAATTA
1 AATTCCCAAAATAGCACCTTTTCGAATTA
*
7264211 AATTCCCAGAATAGCACCTATTTCGAATT-
1 AATTCCCAAAATAGCACCT-TTTCGAATTA
7264240 AATTCCCAAAAT
1 AATTCCCAAAAT
7264252 GTCACCTGGT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
29 57 0.86
30 9 0.14
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.30
Consensus pattern (29 bp):
AATTCCCAAAATAGCACCTTTTCGAATTA
Found at i:7270530 original size:117 final size:117
Alignment explanation
Indices: 7270350--7270651 Score: 403
Period size: 117 Copynumber: 2.6 Consensus size: 117
7270340 TTTTATATAT
* ***
7270350 TTCCCC-GAAACATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACGA-AGTTGAGGA
1 TTCCCCAGAACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCAC-ACAGCAAAGGA
* * *
7270413 GCCTGCAGTAATAACGTCTCCATCTAGTCTCTTCC-ATAACTACAATGTGTAGG
65 GCCTGCAGTAATAACGTCCCCATCCAGTCAC-TCCAATAACTACAATGTGTAGG
* * * *
7270466 TTCTCCAGTACCATACACCCACTTGCACACAAGTAAGGACTTACCCTAAGCACACAGCAAAGGAG
1 TTCCCCAGAACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGAG
* **
7270531 CCTGCAGTAATAACTTCCCCATCCAGTCACTCCAATCGCTACAATGTGTAGG
66 CCTGCAGTAATAACGTCCCCATCCAGTCACTCCAATAACTACAATGTGTAGG
* * * *
7270583 TTCCCCAGAACCATACACCCACCTGTACACCAGTAAGGACTTACCCTGAGCACACAACAAATGAG
1 TTCCCCAGAACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGAG
7270648 CCTG
66 CCTG
7270652 AAATACTTCC
Statistics
Matches: 161, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
116 9 0.06
117 152 0.94
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.20
Consensus pattern (117 bp):
TTCCCCAGAACCATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGAG
CCTGCAGTAATAACGTCCCCATCCAGTCACTCCAATAACTACAATGTGTAGG
Found at i:7271612 original size:29 final size:29
Alignment explanation
Indices: 7271570--7271648 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
7271560 GTCAACCATT
* *
7271570 TTACAAAAATAGCACCCTTTTTAAAAT-AA
1 TTACCAAAATAGCA-CCTTTTCAAAATAAA
*
7271599 TTACCAAAATAGCACCTTTTCAAATTAAA
1 TTACCAAAATAGCACCTTTTCAAAATAAA
* *
7271628 TTCCCAAAATATCACCTTTTC
1 TTACCAAAATAGCACCTTTTC
7271649 GAATTAAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 10 0.23
29 34 0.77
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.33
Consensus pattern (29 bp):
TTACCAAAATAGCACCTTTTCAAAATAAA
Found at i:7271653 original size:29 final size:29
Alignment explanation
Indices: 7271597--7271701 Score: 115
Period size: 29 Copynumber: 3.6 Consensus size: 29
7271587 TTTTTAAAAT
* * *
7271597 AATTACCAAAATAGCACCTTTTCAAATTA
1 AATTCCCAAAATATCACCTTTTCGAATTA
7271626 AATTCCCAAAATATCACCTTTTCGAATTA
1 AATTCCCAAAATATCACCTTTTCGAATTA
* * *
7271655 AAATCCCAGAATAGT-ACCCATTTCGAATT-
1 AATTCCCAAAATA-TCA-CCTTTTCGAATTA
*
7271684 AATTCCCAAAATGTCACC
1 AATTCCCAAAATATCACC
7271702 CGGTAAACGG
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
28 3 0.05
29 49 0.77
30 12 0.19
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.30
Consensus pattern (29 bp):
AATTCCCAAAATATCACCTTTTCGAATTA
Found at i:7271746 original size:17 final size:18
Alignment explanation
Indices: 7271724--7271764 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7271714 AACGGTTAAC
*
7271724 GGTCAAC-GGTCGGGTTG
1 GGTCAACGGGTCGGGTCG
*
7271741 GGTCAACGGGTCGTGTCG
1 GGTCAACGGGTCGGGTCG
7271759 GGTCAA
1 GGTCAA
7271765 AACCGGTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.15, C:0.20, G:0.44, T:0.22
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:7275607 original size:32 final size:32
Alignment explanation
Indices: 7275571--7275636 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
7275561 GATCCGTCCT
7275571 GACCTTTTTCTTTTATTTTGAAAATTCATATG
1 GACCTTTTTCTTTTATTTTGAAAATTCATATG
7275603 GACCTTTTTCTTTTATTTTGAAAATTCATATG
1 GACCTTTTTCTTTTATTTTGAAAATTCATATG
7275635 GA
1 GA
7275637 GAGGTAGAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.12, G:0.11, T:0.52
Consensus pattern (32 bp):
GACCTTTTTCTTTTATTTTGAAAATTCATATG
Found at i:7284098 original size:26 final size:26
Alignment explanation
Indices: 7284047--7284121 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
7284037 ACAGTCAACT
*
7284047 ATTACGAAAAAAACA-TTTTTTTATA
1 ATTACGAAAATAACATTTTTTTTATA
7284072 ATTACGAAAATAACATTTTTTTTATA
1 ATTACGAAAATAACATTTTTTTTATA
* *
7284098 ATTACGAAAATATCATCTTTTTTA
1 ATTACGAAAATAACATTTTTTTTA
7284122 AAATAATTAC
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 14 0.30
26 32 0.70
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (26 bp):
ATTACGAAAATAACATTTTTTTTATA
Found at i:7284146 original size:55 final size:55
Alignment explanation
Indices: 7284069--7284251 Score: 201
Period size: 55 Copynumber: 3.3 Consensus size: 55
7284059 ACATTTTTTT
* * *
7284069 ATAATTACGAAAATA-ACATTTTTTTTATAATTACGAAAATATCATCTTTTTTAAA
1 ATAATTACCAAAATATA-ATTTTTTTAATAATTACCAAAATATCATCTTTTTTAAA
** *
7284124 ATAATTACCAAAATATTGTTTTTTTGAAATAATTACCAAAATATCA-CTTTTTCAAA
1 ATAATTACCAAAATATAATTTTTTT--AATAATTACCAAAATATCATCTTTTTTAAA
* *** *
7284180 ATAATTACCAAAATATCACTTTTCAAAATAATTACCAAAATATCAT-TTTTTTCGAA
1 ATAATTACCAAAATAT-AATTTTTTTAATAATTACCAAAATATCATCTTTTTT-AAA
7284236 ATAATTACCAAAATAT
1 ATAATTACCAAAATAT
7284252 CACATGTTTA
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
55 45 0.41
56 43 0.39
57 21 0.19
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.40
Consensus pattern (55 bp):
ATAATTACCAAAATATAATTTTTTTAATAATTACCAAAATATCATCTTTTTTAAA
Found at i:7284241 original size:29 final size:28
Alignment explanation
Indices: 7284069--7284253 Score: 223
Period size: 28 Copynumber: 6.6 Consensus size: 28
7284059 ACATTTTTTT
* * *
7284069 ATAATTACGAAAATAACATTTTTTT--T
1 ATAATTACCAAAATATCATTTTTTTAAA
*
7284095 ATAATTACGAAAATATCATCTTTTTTAAA
1 ATAATTACCAAAATATCAT-TTTTTTAAA
** *
7284124 ATAATTACCAAAATATTGTTTTTTTGAA
1 ATAATTACCAAAATATCATTTTTTTAAA
* *
7284152 ATAATTACCAAAATATCACTTTTTCAAA
1 ATAATTACCAAAATATCATTTTTTTAAA
* *
7284180 ATAATTACCAAAATATCA-CTTTTCAAA
1 ATAATTACCAAAATATCATTTTTTTAAA
*
7284207 ATAATTACCAAAATATCATTTTTTTCGAA
1 ATAATTACCAAAATATCATTTTTTT-AAA
7284236 ATAATTACCAAAATATCA
1 ATAATTACCAAAATATCA
7284254 CATGTTTAAC
Statistics
Matches: 139, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
26 18 0.13
27 32 0.23
28 53 0.38
29 36 0.26
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (28 bp):
ATAATTACCAAAATATCATTTTTTTAAA
Found at i:7284267 original size:29 final size:28
Alignment explanation
Indices: 7284069--7284336 Score: 238
Period size: 29 Copynumber: 9.5 Consensus size: 28
7284059 ACATTTTTTT
* * **
7284069 ATAATTACGAAAATAACA-TTTTTT-TT
1 ATAATTACCAAAATATCACTTTTTTAAA
*
7284095 ATAATTACGAAAATATCATCTTTTTTAAA
1 ATAATTACCAAAATATCA-CTTTTTTAAA
*** *
7284124 ATAATTACCAAAATATTGTTTTTTTGAA
1 ATAATTACCAAAATATCACTTTTTTAAA
*
7284152 ATAATTACCAAAATATCACTTTTTCAAA
1 ATAATTACCAAAATATCACTTTTTTAAA
*
7284180 ATAATTACCAAAATATCAC-TTTTCAAA
1 ATAATTACCAAAATATCACTTTTTTAAA
* *
7284207 ATAATTACCAAAATATCATTTTTTTCGAA
1 ATAATTACCAAAATATCACTTTTTT-AAA
* *
7284236 ATAATTACCAAAATATCACATGTTTAACA
1 ATAATTACCAAAATATCACTTTTTTAA-A
* * * * *
7284265 ATATTTACTAAACTAACACCTTTTTAACA
1 ATAATTACCAAAATATCACTTTTTTAA-A
* * * *
7284294 ATATTTACGAAACTAACACTTTTTTAACA
1 ATAATTACCAAAATATCACTTTTTTAA-A
*
7284323 AT-ATTACAAAAATA
1 ATAATTACCAAAATA
7284337 CCACCATAAC
Statistics
Matches: 205, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
26 17 0.08
27 26 0.13
28 70 0.34
29 92 0.45
ACGTcount: A:0.45, C:0.14, G:0.03, T:0.38
Consensus pattern (28 bp):
ATAATTACCAAAATATCACTTTTTTAAA
Found at i:7288566 original size:26 final size:26
Alignment explanation
Indices: 7288536--7288608 Score: 121
Period size: 25 Copynumber: 2.8 Consensus size: 26
7288526 ACAGTCAACT
7288536 ATTACGAAAATAACATTTTTTTTATA
1 ATTACGAAAATAACATTTTTTTTATA
7288562 ATTACGAAAATAACA-TTTTTTTATA
1 ATTACGAAAATAACATTTTTTTTATA
* *
7288587 ATTACGAAAATATCATCTTTTT
1 ATTACGAAAATAACATTTTTTT
7288609 CAAAATAATT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 24 0.55
26 20 0.45
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (26 bp):
ATTACGAAAATAACATTTTTTTTATA
Found at i:7288608 original size:28 final size:27
Alignment explanation
Indices: 7288536--7288773 Score: 146
Period size: 28 Copynumber: 8.6 Consensus size: 27
7288526 ACAGTCAACT
* *
7288536 ATTACGAAAATAACA-TTTTTTTTATA
1 ATTACCAAAATATCACTTTTTTTTATA
* *
7288562 ATTACGAAAATA--ACATTTTTTTATA
1 ATTACCAAAATATCACTTTTTTTTATA
* ***
7288587 ATTACGAAAATATCATCTTTTTCAAAATA
1 ATTACCAAAATATCA-CTTTTT-TTTATA
**
7288616 ATTACCAAAATAT-TGTTTTTTTTAAATA
1 ATTACCAAAATATCACTTTTTTTT--ATA
**
7288644 ATTACCAAAATAT-TGTTTTTTTTGAAATA
1 ATTACCAAAATATCACTTTTTTTT---ATA
***
7288673 ATTACCAAAATATCACTTTTTCAAAATA
1 ATTACCAAAATATCACTTTTT-TTTATA
***
7288701 ATTACCAAAATATCACTTTTTCGAAATA
1 ATTACCAAAATATCACTTTTT-TTTATA
* *
7288729 ATTATCAAAATATCA-TTTTTTTCGAAATA
1 ATTACCAAAATATCACTTTTTTT---TATA
7288758 ATTACCAAAATATCAC
1 ATTACCAAAATATCAC
7288774 CTGTTTAACA
Statistics
Matches: 177, Mismatches: 21, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.01
25 22 0.12
26 12 0.07
27 11 0.06
28 75 0.42
29 51 0.29
30 5 0.03
ACGTcount: A:0.43, C:0.12, G:0.03, T:0.42
Consensus pattern (27 bp):
ATTACCAAAATATCACTTTTTTTTATA
Found at i:7288617 original size:29 final size:29
Alignment explanation
Indices: 7288584--7288772 Score: 231
Period size: 28 Copynumber: 6.6 Consensus size: 29
7288574 ACATTTTTTT
*
7288584 ATAATTACGAAAATATCATCTTTTTCAAA
1 ATAATTACCAAAATATCATCTTTTTCAAA
** **
7288613 ATAATTACCAAAATATTGT-TTTTTTTAA
1 ATAATTACCAAAATATCATCTTTTTCAAA
** * **
7288641 ATAATTACCAAAATATTGTTTTTTTTGAA
1 ATAATTACCAAAATATCATCTTTTTCAAA
7288670 ATAATTACCAAAATATCA-CTTTTTCAAA
1 ATAATTACCAAAATATCATCTTTTTCAAA
*
7288698 ATAATTACCAAAATATCA-CTTTTTCGAA
1 ATAATTACCAAAATATCATCTTTTTCAAA
* * *
7288726 ATAATTATCAAAATATCATTTTTTTCGAA
1 ATAATTACCAAAATATCATCTTTTTCAAA
7288755 ATAATTACCAAAATATCA
1 ATAATTACCAAAATATCA
7288773 CCTGTTTAAC
Statistics
Matches: 143, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
28 77 0.54
29 66 0.46
ACGTcount: A:0.43, C:0.13, G:0.03, T:0.41
Consensus pattern (29 bp):
ATAATTACCAAAATATCATCTTTTTCAAA
Found at i:7288771 original size:57 final size:57
Alignment explanation
Indices: 7288559--7288773 Score: 244
Period size: 57 Copynumber: 3.8 Consensus size: 57
7288549 CATTTTTTTT
* * * *
7288559 ATAATTACGAAAATAACATTTTTTT----ATAATTACGAAAATATCATCTTTTTCAAA
1 ATAATTACCAAAATATCATTTTTTTCAAAATAATTACCAAAATATCA-CTTTTTCGAA
** * *** *
7288613 ATAATTACCAAAATATTGTTTTTTT-TAAATAATTACCAAAATATTGTTTTTTTTGAA
1 ATAATTACCAAAATATCATTTTTTTCAAAATAATTACCAAAATA-TCACTTTTTCGAA
*
7288670 ATAATTACCAAAATATCA-CTTTTTCAAAATAATTACCAAAATATCACTTTTTCGAA
1 ATAATTACCAAAATATCATTTTTTTCAAAATAATTACCAAAATATCACTTTTTCGAA
* *
7288726 ATAATTATCAAAATATCATTTTTTTCGAAATAATTACCAAAATATCAC
1 ATAATTACCAAAATATCATTTTTTTCAAAATAATTACCAAAATATCAC
7288774 CTGTTTAACA
Statistics
Matches: 134, Mismatches: 21, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
54 21 0.16
56 31 0.23
57 81 0.60
58 1 0.01
ACGTcount: A:0.43, C:0.13, G:0.03, T:0.41
Consensus pattern (57 bp):
ATAATTACCAAAATATCATTTTTTTCAAAATAATTACCAAAATATCACTTTTTCGAA
Found at i:7288803 original size:29 final size:29
Alignment explanation
Indices: 7288771--7288850 Score: 115
Period size: 29 Copynumber: 2.7 Consensus size: 29
7288761 ACCAAAATAT
*
7288771 CACCTGTTTAACAATATTTACGAAACTAA
1 CACCTTTTTAACAATATTTACGAAACTAA
*
7288800 CACCTTTTTAACAATATTTATGAAACTAA
1 CACCTTTTTAACAATATTTACGAAACTAA
* *
7288829 AACTTTTTTTAACAATATTTAC
1 CAC-CTTTTTAACAATATTTAC
7288851 AAAAATACCA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 29 0.64
30 16 0.36
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.39
Consensus pattern (29 bp):
CACCTTTTTAACAATATTTACGAAACTAA
Found at i:7288976 original size:11 final size:11
Alignment explanation
Indices: 7288960--7288986 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7288950 CTAAAACACT
7288960 GAAATATTATC
1 GAAATATTATC
7288971 GAAATATTATC
1 GAAATATTATC
7288982 GAAAT
1 GAAAT
7288987 TAAACGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.33
Consensus pattern (11 bp):
GAAATATTATC
Found at i:7289556 original size:2 final size:2
Alignment explanation
Indices: 7289545--7289602 Score: 102
Period size: 2 Copynumber: 30.0 Consensus size: 2
7289535 TTCTTAGTGC
7289545 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7289586 -A TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
7289603 GTGGAAGTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 52 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7289860 original size:71 final size:71
Alignment explanation
Indices: 7289713--7289900 Score: 254
Period size: 71 Copynumber: 2.7 Consensus size: 71
7289703 TAATCTTAGG
* * * *
7289713 AATTGCATCTTACTTGAGATA-TTTCCCTTGAAAATTTTCATCTCATTCGATACAGTTGCACTCG
1 AATTTCATCTCACTTAAGATATTTTCCCTTGAAAATTTTCATCTCACTCGATACAGTTGCACTCG
7289777 AAACAA
66 AAACAA
* *
7289783 AATTTCATCTCACTTAAGATGTTTTCCCTTGAAAATTTTCATCTCACTCGATACAGTTTCACTCG
1 AATTTCATCTCACTTAAGATATTTTCCCTTGAAAATTTTCATCTCACTCGATACAGTTGCACTCG
**
7289848 AATTAA
66 AAACAA
** * *
7289854 TTTTTCATCTCACTTGAGATATTTTCCCTTGAAAA-ATTCATCTCACT
1 AATTTCATCTCACTTAAGATATTTTCCCTTGAAAATTTTCATCTCACT
7289901 TAAGATATTT
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
70 28 0.27
71 76 0.73
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (71 bp):
AATTTCATCTCACTTAAGATATTTTCCCTTGAAAATTTTCATCTCACTCGATACAGTTGCACTCG
AAACAA
Found at i:7289899 original size:33 final size:34
Alignment explanation
Indices: 7289718--7290129 Score: 198
Period size: 34 Copynumber: 11.9 Consensus size: 34
7289708 TTAGGAATTG
*
7289718 CATCTTACTTGAGATA-TTTCCCTTGAAAATTTT
1 CATCTCACTTGAGATATTTTCCCTTGAAAATTTT
* * * * * * *
7289751 CATCTCA-TTCGATACAGTTGCACTCGAAACAAAATTT
1 CATCTCACTT-GAGATATTTTCCCTTG--A-AAATTTT
* *
7289788 CATCTCACTTAAGATGTTTTCCCTTGAAAATTTT
1 CATCTCACTTGAGATATTTTCCCTTGAAAATTTT
* * * * * *
7289822 CATCTCACTCGATACAGTTTCACTCGAATTAATTTTT
1 CATCTCACTTGAGATATTTTCCCTTGAA--AA-TTTT
*
7289859 CATCTCACTTGAGATATTTTCCCTTGAAAA-ATT
1 CATCTCACTTGAGATATTTTCCCTTGAAAATTTT
* *
7289892 CATCTCACTTAAGATATTTTCACTTGAAAATTTT
1 CATCTCACTTGAGATATTTTCCCTTGAAAATTTT
** * *** * *
7289926 TGTCTCACTCT-AGATAGTTTCTCTCAAAACAAAATTG
1 CATCTCACT-TGAGATA-TTT-TCCCTTGA-AAATTTT
*
7289963 CATCTCACTTGAGATA-TTTCCCTTGCAAATTTT
1 CATCTCACTTGAGATATTTTCCCTTGAAAATTTT
** * * *
7289996 TGTCTCACTCGAGAGT-TATT--CATGAAACAAATTTT
1 CATCTCACTTGAGA-TATTTTCCCTTG--A-AAATTTT
* *
7290031 -ATCTCACTTGATATATTTTCTCTTGAAAATTTT
1 CATCTCACTTGAGATATTTTCCCTTGAAAATTTT
* * * * *
7290064 CATCTTACTCGAGACATATTCCCTCGAAATAATTTT
1 CATCTCACTTGAGATATTTTCCCTTG-AA-AATTTT
* * *
7290100 C-TTTCACTTGTA-ATATTTTCTCTTAAAAAT
1 CATCTCACTTG-AGATATTTTCCCTTGAAAAT
7290130 ATTGTCTCAA
Statistics
Matches: 275, Mismatches: 77, Indels: 54
0.68 0.19 0.13
Matches are distributed among these distances:
32 5 0.02
33 67 0.24
34 86 0.31
35 32 0.12
36 19 0.07
37 64 0.23
38 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.41
Consensus pattern (34 bp):
CATCTCACTTGAGATATTTTCCCTTGAAAATTTT
Found at i:7290004 original size:104 final size:104
Alignment explanation
Indices: 7289781--7289987 Score: 272
Period size: 104 Copynumber: 2.0 Consensus size: 104
7289771 CACTCGAAAC
* * * *
7289781 AAAATTTCATCTCACTTAAGATGTTTTCCCTTGAAAATTTTCATCTCACTCGATACAGTTTCACT
1 AAAAATTCATCTCACTTAAGATATTTTCACTTGAAAATTTTCATCTCACTCGAGACAGTTTCACT
* ** ** *
7289846 CGAATTAATTTTTCATCTCACTTGAGATATTTTCCCTTG
66 CAAAACAAAATTGCATCTCACTTGAGATATTTTCCCTTG
** * * *
7289885 AAAAATTCATCTCACTTAAGATATTTTCACTTGAAAATTTTTGTCTCACTCTAGATAGTTTCTCT
1 AAAAATTCATCTCACTTAAGATATTTTCACTTGAAAATTTTCATCTCACTCGAGACAGTTTCACT
7289950 CAAAACAAAATTGCATCTCACTTGAGATA-TTTCCCTTG
66 CAAAACAAAATTGCATCTCACTTGAGATATTTTCCCTTG
7289988 CAAATTTTTG
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
103 9 0.10
104 79 0.90
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (104 bp):
AAAAATTCATCTCACTTAAGATATTTTCACTTGAAAATTTTCATCTCACTCGAGACAGTTTCACT
CAAAACAAAATTGCATCTCACTTGAGATATTTTCCCTTG
Found at i:7290077 original size:68 final size:69
Alignment explanation
Indices: 7289814--7290147 Score: 182
Period size: 70 Copynumber: 4.8 Consensus size: 69
7289804 TTTTCCCTTG
* * * * * * * *
7289814 AAAATTTTCATCTCACTCGATACAGTTTCACTCGAATTAATTTTTCATCTCACTTGAGATATTTT
1 AAAATTTT-ATCTCACTTGATATATTTTCTCTTGAA--AA-TTTTCATCTCACTCGAGACATATT
* *
7289879 CCCTTG-A
62 CCATCGAA
* * * * ** * *
7289886 AAAA-TTCATCTCACTTAAGATATTTTCACTTGAAAATTTTTGTCTCACTCTAGATAGT-TTCTC
1 AAAATTTTATCTCACTTGATATATTTTCTCTTGAAAATTTTCATCTCACTCGAGACA-TATTC-C
*
7289949 -TCAAAA
64 ATC-GAA
** * * * ** **
7289955 CAAAATTGCATCTCACTTGAGATA-TTTCCCTTGCAAATTTTTGTCTCACTCGAGAGTTATT-CA
1 -AAAATTTTATCTCACTTGATATATTTTCTCTTGAAAATTTTCATCTCACTCGAGACATATTCCA
7290018 T-GAA
65 TCGAA
* *
7290022 ACAAATTTTATCTCACTTGATATATTTTCTCTTGAAAATTTTCATCTTACTCGAGACATATTCCC
1 A-AAATTTTATCTCACTTGATATATTTTCTCTTGAAAATTTTCATCTCACTCGAGACATATTCCA
7290087 TCGAA
65 TCGAA
* * * * * * *
7290092 ATAATTTTCTTTCACTTG-TAATATTTTCTCTTAAAAATATT-GTCTCAATCGAGACA
1 AAAATTTTATCTCACTTGAT-ATATTTTCTCTTGAAAATTTTCATCTCACTCGAGACA
7290148 GTTTTTTGAC
Statistics
Matches: 209, Mismatches: 40, Indels: 30
0.75 0.14 0.11
Matches are distributed among these distances:
66 1 0.00
67 41 0.20
68 48 0.23
69 38 0.18
70 59 0.28
71 18 0.09
72 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (69 bp):
AAAATTTTATCTCACTTGATATATTTTCTCTTGAAAATTTTCATCTCACTCGAGACATATTCCAT
CGAA
Found at i:7292016 original size:23 final size:23
Alignment explanation
Indices: 7291989--7292037 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
7291979 ATTTGACATA
7291989 ACATTTCCATCTACCACCCATCC
1 ACATTTCCATCTACCACCCATCC
*
7292012 ACATTTCGATCTACCACCCATCC
1 ACATTTCCATCTACCACCCATCC
7292035 ACA
1 ACA
7292038 CTACCATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.45, G:0.02, T:0.24
Consensus pattern (23 bp):
ACATTTCCATCTACCACCCATCC
Found at i:7293353 original size:13 final size:13
Alignment explanation
Indices: 7293335--7293376 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
7293325 GTCATAAATC
7293335 TATGACGCACATT
1 TATGACGCACATT
*
7293348 TATGACACACATT
1 TATGACGCACATT
7293361 TATGACGCACATT
1 TATGACGCACATT
7293374 TAT
1 TAT
7293377 AACGTTCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (13 bp):
TATGACGCACATT
Found at i:7296112 original size:18 final size:18
Alignment explanation
Indices: 7296089--7296133 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
7296079 CTAAGGGAAG
7296089 AAAATTTCTCAACAAGGC
1 AAAATTTCTCAACAAGGC
7296107 AAAATTTCTCAACAAGGC
1 AAAATTTCTCAACAAGGC
7296125 AAAATTTCT
1 AAAATTTCT
7296134 ACGGTTTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (18 bp):
AAAATTTCTCAACAAGGC
Found at i:7301878 original size:21 final size:22
Alignment explanation
Indices: 7301840--7301883 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
7301830 ATGATTAATG
**
7301840 TAAATTAATATAGTTTAATTTA
1 TAAATTAATATAAATTAATTTA
7301862 TAAATT-ATATAAATTAATTTA
1 TAAATTAATATAAATTAATTTA
7301883 T
1 T
7301884 GTAAAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
TAAATTAATATAAATTAATTTA
Found at i:7302442 original size:7 final size:7
Alignment explanation
Indices: 7302430--7302463 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
7302420 TTACAAGGCA
7302430 GCAACAG
1 GCAACAG
7302437 GCAACAG
1 GCAACAG
7302444 GCAACAG
1 GCAACAG
*
7302451 GCAACAA
1 GCAACAG
7302458 GCAACA
1 GCAACA
7302464 ACAAGCAGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.47, C:0.29, G:0.24, T:0.00
Consensus pattern (7 bp):
GCAACAG
Found at i:7302465 original size:17 final size:17
Alignment explanation
Indices: 7302422--7302507 Score: 72
Period size: 17 Copynumber: 5.2 Consensus size: 17
7302412 AAAATAAATT
7302422 ACAAGGCAGCAACAGGCA
1 ACAA-GCAGCAACAGGCA
7302440 AC-AG--GCAACAGGCA
1 ACAAGCAGCAACAGGCA
* *
7302454 ACAAGCAACAACAAGCA
1 ACAAGCAGCAACAGGCA
* * *
7302471 GCAGGCAGCAATCA-ACA
1 ACAAGCAGCAA-CAGGCA
*
7302488 ACAAGCAGCATCAGGCA
1 ACAAGCAGCAACAGGCA
7302505 ACA
1 ACA
7302508 TTTATGCATT
Statistics
Matches: 53, Mismatches: 10, Indels: 11
0.72 0.14 0.15
Matches are distributed among these distances:
14 12 0.23
15 2 0.04
16 3 0.06
17 32 0.60
18 4 0.08
ACGTcount: A:0.47, C:0.29, G:0.22, T:0.02
Consensus pattern (17 bp):
ACAAGCAGCAACAGGCA
Found at i:7302505 original size:24 final size:24
Alignment explanation
Indices: 7302425--7302497 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
7302415 ATAAATTACA
* * *
7302425 AGGCAGCAA-CAGGCAACAGGCAAC
1 AGGCAGCAATCA-ACAACAAGCAGC
* *
7302449 AGGCAACAAGCAACAACAAGCAGC
1 AGGCAGCAATCAACAACAAGCAGC
7302473 AGGCAGCAATCAACAACAAGCAGC
1 AGGCAGCAATCAACAACAAGCAGC
7302497 A
1 A
7302498 TCAGGCAACA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 40 0.95
25 2 0.05
ACGTcount: A:0.47, C:0.29, G:0.23, T:0.01
Consensus pattern (24 bp):
AGGCAGCAATCAACAACAAGCAGC
Found at i:7305447 original size:29 final size:29
Alignment explanation
Indices: 7305386--7305457 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
7305376 GGGTTTTTTA
* *
7305386 GGTTCGAGTTTGAATTTGGGTTCAGATTCG
1 GGTTCAAGTTTG-GTTTGGGTTCAGATTCG
* * * *
7305416 GGTTCATGTTTGGTTTGGGTTCGGGTTTG
1 GGTTCAAGTTTGGTTTGGGTTCAGATTCG
7305445 GGTTCAAGTTTGG
1 GGTTCAAGTTTGG
7305458 GTTCAAATTC
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
29 25 0.71
30 10 0.29
ACGTcount: A:0.11, C:0.08, G:0.38, T:0.43
Consensus pattern (29 bp):
GGTTCAAGTTTGGTTTGGGTTCAGATTCG
Done.