Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 89
Found at i:7494322 original size:22 final size:21
Alignment explanation
Indices: 7494295--7494338 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
7494285 TGAAATAAAT
7494295 AAAA-TTAAAAATATTTCAAAAA
1 AAAATTTAAAAAT-TTT-AAAAA
*
7494317 AAAATTTAGAAATTTTAAAAA
1 AAAATTTAAAAATTTTAAAAA
7494338 A
1 A
7494339 TGAGCATCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 7 0.35
23 7 0.35
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
AAAATTTAAAAATTTTAAAAA
Found at i:7494546 original size:18 final size:17
Alignment explanation
Indices: 7494515--7494593 Score: 68
Period size: 17 Copynumber: 4.4 Consensus size: 17
7494505 ATGACTCAAT
**
7494515 TTTTTTATAATTTTATA
1 TTTTTTATTTTTTTATA
*
7494532 TTTTCTTATTTTTTTTTA
1 TTTT-TTATTTTTTTATA
*
7494550 TCTTTTTATTGCTTTTGATA
1 T-TTTTTATT--TTTTTATA
* *
7494570 TTTTTTATTATTATATA
1 TTTTTTATTTTTTTATA
7494587 TTTTTTA
1 TTTTTTA
7494594 ATAAATTATA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 11 0.22
20 7 0.14
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTTTTATTTTTTTATA
Found at i:7495344 original size:21 final size:21
Alignment explanation
Indices: 7495320--7495378 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
7495310 CCTTTAAGGA
* *
7495320 AAGGGATTGATTCTTTTCATC
1 AAGGGATCGATCCTTTTCATC
*
7495341 AAGGGATCGATCCTTTTCCTC
1 AAGGGATCGATCCTTTTCATC
*
7495362 AAGGTATCGATCCTTTT
1 AAGGGATCGATCCTTTT
7495379 GTGAAGGGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (21 bp):
AAGGGATCGATCCTTTTCATC
Found at i:7497340 original size:21 final size:20
Alignment explanation
Indices: 7497302--7497340 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7497292 TTCAAACATC
*
7497302 CAAAATCCATCAAACAAATT
1 CAAAATCCAACAAACAAATT
*
7497322 CAAACATCCAACAATCAAA
1 CAAA-ATCCAACAAACAAA
7497341 GTTAAAAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.15
Consensus pattern (20 bp):
CAAAATCCAACAAACAAATT
Found at i:7499330 original size:21 final size:22
Alignment explanation
Indices: 7499306--7499354 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
7499296 GGGGTATCGA
*
7499306 TTCCCCT-ATAGGGGGAATCAG
1 TTCCCCTCAAAGGGGGAATCAG
* *
7499327 TTCCACTTCAAAGGGGGAATCGG
1 TTCC-CCTCAAAGGGGGAATCAG
7499350 TTCCC
1 TTCCC
7499355 TTTCAAGGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.17
22 3 0.13
23 16 0.70
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (22 bp):
TTCCCCTCAAAGGGGGAATCAG
Found at i:7499371 original size:23 final size:23
Alignment explanation
Indices: 7499315--7499378 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
7499305 ATTCCCCTAT
*
7499315 AGGGGGAATCAGTTCCAC-TTCAA
1 AGGGGGAATCGGTTCC-CTTTCAA
7499338 AGGGGGAATCGGTTCCCTTTCAA
1 AGGGGGAATCGGTTCCCTTTCAA
* * *
7499361 GGGGGGTATCGATTCCCT
1 AGGGGGAATCGGTTCCCT
7499379 ATGCACTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 1 0.03
23 35 0.97
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (23 bp):
AGGGGGAATCGGTTCCCTTTCAA
Found at i:7508745 original size:111 final size:112
Alignment explanation
Indices: 7508518--7508819 Score: 441
Period size: 111 Copynumber: 2.7 Consensus size: 112
7508508 AAATTCATAT
*
7508518 AATTTCTT-AGTTTTTGCAC-CTAAAGTGCCCATACGGAAATTCATAAACTAATTATGAATTTCT
1 AATTTCTTAACTTTTTGCACAC-AAAGTGCCCATACGGAAATTCATAAAC--ATTATGAATTTCT
* *
7508581 TAACTTTTTACACA-AAAGTGCCCAAACGGAAATTCATAAACTAATTATG
63 TAACTTTTTGCACACAAAGTGCCCAAACGAAAATTCATAAACTAATTATG
* * *
7508630 AATTTCTTAACTTTTTGCACACAGAGTGCCCATACGAAAATTCATAAAC-TTATTAATTTCTTAA
1 AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACATTATGAATTTCTTAA
* *
7508694 CTTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTTATTATG
66 CTTTTTGCACACAAAGTGCCCAAACGAAAATTCATAAACTAATTATG
* *
7508741 AATTTCTTAACTTTTTGCACACAAAGTGCCCTTATGGAAATTCATAAACTAATTATGAATTTCTT
1 AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAAC--ATTATGAATTTCTT
7508806 AACTTTTTGCACAC
64 AACTTTTTGCACAC
7508820 TTAGTGCCAT
Statistics
Matches: 171, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
110 24 0.14
111 77 0.45
112 8 0.05
113 35 0.20
114 27 0.16
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (112 bp):
AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACATTATGAATTTCTTAA
CTTTTTGCACACAAAGTGCCCAAACGAAAATTCATAAACTAATTATG
Found at i:7508827 original size:57 final size:57
Alignment explanation
Indices: 7508518--7508819 Score: 463
Period size: 57 Copynumber: 5.4 Consensus size: 57
7508508 AAATTCATAT
*
7508518 AATTTCTT-AGTTTTTGCAC-CTAAAGTGCCCATACGGAAATTCATAAACTAATTATG
1 AATTTCTTAACTTTTTGCACAC-AAAGTGCCCATACGGAAATTCATAAACTAATTATG
* *
7508574 AATTTCTTAACTTTTTACACA-AAAGTGCCCAAACGGAAATTCATAAACTAATTATG
1 AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTAATTATG
* * *
7508630 AATTTCTTAACTTTTTGCACACAGAGTGCCCATACGAAAATTCATAAAC---TTATT
1 AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTAATTATG
* *
7508684 AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTTATTATG
1 AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTAATTATG
* *
7508741 AATTTCTTAACTTTTTGCACACAAAGTGCCCTTATGGAAATTCATAAACTAATTATG
1 AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTAATTATG
7508798 AATTTCTTAACTTTTTGCACAC
1 AATTTCTTAACTTTTTGCACAC
7508820 TTAGTGCCAT
Statistics
Matches: 226, Mismatches: 14, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
54 52 0.23
56 62 0.27
57 112 0.50
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (57 bp):
AATTTCTTAACTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTAATTATG
Found at i:7512084 original size:22 final size:21
Alignment explanation
Indices: 7512047--7512087 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
7512037 CCATCTCCAT
7512047 TTCATCATCAACACCATCATC
1 TTCATCATCAACACCATCATC
*
7512068 TTCATCCATCAAGACCATCA
1 TTCAT-CATCAACACCATCA
7512088 ATTCCGCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.34, C:0.37, G:0.02, T:0.27
Consensus pattern (21 bp):
TTCATCATCAACACCATCATC
Found at i:7512412 original size:5 final size:5
Alignment explanation
Indices: 7512402--7512459 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
7512392 TTGGAGTACA
* *
7512402 AAAAG AAAAG AAAAG AAAAA AAGAAG AAAAA ATCAGAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AA-AAG AAAAG A--A-AAG AAAAG AAAAG
7512451 AAAAAG AAA
1 -AAAAG AAA
7512460 TTCAAAAAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 30 0.68
6 10 0.23
7 1 0.02
8 3 0.07
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:7512417 original size:10 final size:10
Alignment explanation
Indices: 7512402--7512459 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 10
7512392 TTGGAGTACA
7512402 AAAAGAAAAG
1 AAAAGAAAAG
*
7512412 AAAAGAAAAA
1 AAAAGAAAAG
*
7512422 AAGAAGAAAAA
1 AA-AAGAAAAG
7512433 ATCAGAAGAAAAG
1 A--A-AAGAAAAG
7512446 AAAAGAAAAAG
1 AAAAG-AAAAG
7512457 AAA
1 AAA
7512460 TTCAAAAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
10 14 0.33
11 18 0.43
13 10 0.24
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (10 bp):
AAAAGAAAAG
Found at i:7512433 original size:29 final size:29
Alignment explanation
Indices: 7512401--7512459 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
7512391 ATTGGAGTAC
*
7512401 AAAAAGAAAAGAAAAGAAAA-AAAGAAGAA
1 AAAAACAAAAGAAAAGAAAAGAAA-AAGAA
* *
7512430 AAAATCAGAAGAAAAGAAAAGAAAAAGAA
1 AAAAACAAAAGAAAAGAAAAGAAAAAGAA
7512459 A
1 A
7512460 TTCAAAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.02
Consensus pattern (29 bp):
AAAAACAAAAGAAAAGAAAAGAAAAAGAA
Found at i:7516690 original size:22 final size:21
Alignment explanation
Indices: 7516653--7516693 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
7516643 CCATCTCCAT
7516653 TTCATCATCAACACCATCATC
1 TTCATCATCAACACCATCATC
*
7516674 TTCATCCATCAAGACCATCA
1 TTCAT-CATCAACACCATCA
7516694 ATTTCGTAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.34, C:0.37, G:0.02, T:0.27
Consensus pattern (21 bp):
TTCATCATCAACACCATCATC
Found at i:7521271 original size:19 final size:19
Alignment explanation
Indices: 7521215--7521275 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
7521205 GTTTGAAATA
* *
7521215 AAATAAAATAAATAATTAT
1 AAATAAAATAAGTAATAAT
* *
7521234 AATTTAAA-AAG-AA-AA-
1 AAATAAAATAAGTAATAAT
7521249 AAATAAAATAAGTAATAAT
1 AAATAAAATAAGTAATAAT
7521268 AAATAAAA
1 AAATAAAA
7521276 GGGGAAAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 6 0.19
16 4 0.12
17 4 0.12
18 4 0.12
19 14 0.44
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (19 bp):
AAATAAAATAAGTAATAAT
Found at i:7521367 original size:18 final size:18
Alignment explanation
Indices: 7521346--7521388 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7521336 GTTATTTTTA
* *
7521346 AAATAAAAGATAAGAATT
1 AAATAAAAGAAAAGAAAT
*
7521364 AAATAAAAGAAAATAAAT
1 AAATAAAAGAAAAGAAAT
7521382 AAATAAA
1 AAATAAA
7521389 TAATCTAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (18 bp):
AAATAAAAGAAAAGAAAT
Found at i:7525692 original size:20 final size:20
Alignment explanation
Indices: 7525664--7525711 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7525654 TGATCAGAGA
*
7525664 AAAAGAAAATAAAATTAATG
1 AAAATAAAATAAAATTAATG
*
7525684 AAAATAAAATAAATTTAATG
1 AAAATAAAATAAAATTAATG
*
7525704 GAAATAAA
1 AAAATAAA
7525712 GTTTGTTGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (20 bp):
AAAATAAAATAAAATTAATG
Found at i:7531322 original size:18 final size:18
Alignment explanation
Indices: 7531263--7531329 Score: 57
Period size: 18 Copynumber: 3.7 Consensus size: 18
7531253 TACAATTTGA
*
7531263 AATAA-AATAAAATAAAT
1 AATAATAATAAAATAAGT
* * *
7531280 AATTATAATTTAAA-AAGA
1 AATAATAA-TAAAATAAGT
*
7531298 AAAAATAATAAAATAAGT
1 AATAATAATAAAATAAGT
7531316 AATAATAAATAAAA
1 AATAAT-AATAAAA
7531330 GGGGGAAATA
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
17 8 0.22
18 18 0.49
19 11 0.30
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (18 bp):
AATAATAATAAAATAAGT
Found at i:7533496 original size:19 final size:19
Alignment explanation
Indices: 7533472--7533542 Score: 81
Period size: 19 Copynumber: 3.7 Consensus size: 19
7533462 CAATCATTGG
*
7533472 TCAACGGGTTGGGTCAAAT
1 TCAACGGGTCGGGTCAAAT
* * *
7533491 TCAACGGGTTGGGTCGAAG
1 TCAACGGGTCGGGTCAAAT
*
7533510 TCAACGGGTCAGGTCAAAGT
1 TCAACGGGTCGGGTCAAA-T
7533530 T-AACGGGTCGGGT
1 TCAACGGGTCGGGT
7533543 AGGGTTAGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 43 0.98
20 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.37, T:0.23
Consensus pattern (19 bp):
TCAACGGGTCGGGTCAAAT
Found at i:7535455 original size:30 final size:31
Alignment explanation
Indices: 7535421--7535510 Score: 112
Period size: 31 Copynumber: 2.9 Consensus size: 31
7535411 TAAAAATTTT
7535421 GGTACTAAAATGAAACAAAAAGTTAAC-A-A
1 GGTACTAAAATGAAACAAAAAGTTAACGACA
7535450 GGGTACTAAAATGAAACAAAAAAGTTAACGACA
1 -GGTACTAAAATGAAAC-AAAAAGTTAACGACA
* * * *
7535483 TGTACTAAAATTAAAGAAAAAGTAAACG
1 GGTACTAAAATGAAACAAAAAGTTAACG
7535511 TGAGGTATGA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
30 16 0.30
31 22 0.42
32 14 0.26
33 1 0.02
ACGTcount: A:0.57, C:0.10, G:0.16, T:0.18
Consensus pattern (31 bp):
GGTACTAAAATGAAACAAAAAGTTAACGACA
Found at i:7537280 original size:13 final size:13
Alignment explanation
Indices: 7537214--7537274 Score: 79
Period size: 13 Copynumber: 4.7 Consensus size: 13
7537204 GCGTCATAAT
7537214 TTTATGACGTC-CA
1 TTTATGACG-CACA
*
7537227 TTTATGACACACA
1 TTTATGACGCACA
*
7537240 TTTATGACACACA
1 TTTATGACGCACA
*
7537253 TTTATGACGCGCA
1 TTTATGACGCACA
7537266 TTTATGACG
1 TTTATGACG
7537275 TTCATTGAGC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
12 1 0.02
13 43 0.98
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (13 bp):
TTTATGACGCACA
Found at i:7539427 original size:20 final size:20
Alignment explanation
Indices: 7539379--7539416 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7539369 ATGATTTCTT
7539379 CATAACAACTAATGTACTAC
1 CATAACAACTAATGTACTAC
7539399 CATAACAACTAATGTACT
1 CATAACAACTAATGTACT
7539417 TCCAAGACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (20 bp):
CATAACAACTAATGTACTAC
Found at i:7544022 original size:18 final size:20
Alignment explanation
Indices: 7543999--7544042 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
7543989 TTATGAATAA
*
7543999 AATAATCTAAA-CAAAAAT-
1 AATAATCAAAACCAAAAATC
*
7544017 AATAATCAAAACCAAAGATC
1 AATAATCAAAACCAAAAATC
7544037 AATAAT
1 AATAAT
7544043 TTGCTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 6 0.27
20 6 0.27
ACGTcount: A:0.64, C:0.14, G:0.02, T:0.20
Consensus pattern (20 bp):
AATAATCAAAACCAAAAATC
Found at i:7544148 original size:4 final size:4
Alignment explanation
Indices: 7544141--7544176 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
7544131 ACCTACCTAC
7544141 CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT
1 CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT
7544177 ATTAATTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
CTAT
Found at i:7548935 original size:42 final size:43
Alignment explanation
Indices: 7548877--7548996 Score: 156
Period size: 42 Copynumber: 2.8 Consensus size: 43
7548867 GATGAAAACA
7548877 TTTTGTCACT-GATCTTAGTTGGTGATTTGTGACGATAATTG-T
1 TTTTGTCACTAG-TCTTAGTTGGTGATTTGTGACGATAATTGTT
* * *
7548919 TTTTGAT-AGTAGTCTTAGTTGATGATTTATGACGATAATTGTT
1 TTTTG-TCACTAGTCTTAGTTGGTGATTTGTGACGATAATTGTT
* *
7548962 TTTTGTCACTAGTCTTAGTTAGTGATTTGCGACGA
1 TTTTGTCACTAGTCTTAGTTGGTGATTTGTGACGA
7548997 CAATAACTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
42 35 0.53
43 31 0.47
ACGTcount: A:0.22, C:0.09, G:0.23, T:0.47
Consensus pattern (43 bp):
TTTTGTCACTAGTCTTAGTTGGTGATTTGTGACGATAATTGTT
Found at i:7554918 original size:103 final size:103
Alignment explanation
Indices: 7554718--7554934 Score: 267
Period size: 103 Copynumber: 2.1 Consensus size: 103
7554708 AGTGATGGAG
* * * * * *
7554718 TTATTGTTAATAGTGTTGAACATTTGGTCACTAAAACAGTTACTGTGACAACATTGGTGATCACG
1 TTATTGATAATAGTATTGAACATTTGGTCACTAAAACACTTACTCTGACAACATTGATGATCACA
* * *
7554783 AAATATGCTTTTAGTGTCAAATAAATTTATCACAATTT
66 AAATATACTTTTACTGTCAAATAAATTCATCACAATTT
* * * *
7554821 TTATTGATAATAGTATTGAACATTTGGTCACTAAAAATACTTAGTCTGACAATATTGATGGTCAC
1 TTATTGATAATAGTATTGAACATTTGGTCACT-AAAACACTTACTCTGACAACATTGATGATCAC
*
7554886 AAAATATATTTTTACTGT-AAA-ACAATTCATCACAATTT
65 AAAATATACTTTTACTGTCAAATA-AATTCATCACAATTT
*
7554924 ATATTGATAAT
1 TTATTGATAAT
7554935 TGTGTCGAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
102 1 0.01
103 57 0.59
104 39 0.40
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (103 bp):
TTATTGATAATAGTATTGAACATTTGGTCACTAAAACACTTACTCTGACAACATTGATGATCACA
AAATATACTTTTACTGTCAAATAAATTCATCACAATTT
Found at i:7560772 original size:23 final size:24
Alignment explanation
Indices: 7560732--7560778 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
7560722 TGAATTAGAG
7560732 AACTTCTAGAAATAATTTCTCGTT
1 AACTTCTAGAAATAATTTCTCGTT
*
7560756 AACTTCT-GAAATCATTTCTCGTT
1 AACTTCTAGAAATAATTTCTCGTT
7560779 CTTATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.43
Consensus pattern (24 bp):
AACTTCTAGAAATAATTTCTCGTT
Found at i:7564338 original size:32 final size:30
Alignment explanation
Indices: 7564302--7564390 Score: 92
Period size: 32 Copynumber: 2.9 Consensus size: 30
7564292 CGAGATGTTC
7564302 CCTTGGGTAGGCTCTCAGGCCGCAAGGTACTT
1 CCTTGGGTAGGCTCTCAGGCC-CAAGGTA-TT
7564334 CCTTGGGTAGGCTC-CGAGGCCCTAAGGTATT
1 CCTTGGGTAGGCTCTC-AGGCCC-AAGGTATT
* * *
7564365 CCTT-AGAAGGCTCTAAGGCCTCAAGG
1 CCTTGGGTAGGCTCTCAGGCC-CAAGG
7564391 CAATCTTTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
30 16 0.32
31 9 0.18
32 25 0.50
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (30 bp):
CCTTGGGTAGGCTCTCAGGCCCAAGGTATT
Found at i:7564694 original size:187 final size:188
Alignment explanation
Indices: 7564372--7564728 Score: 470
Period size: 187 Copynumber: 1.9 Consensus size: 188
7564362 ATTCCTTAGA
* * *
7564372 AGGCTCTAAGGCCTCAAGGCAATCTTTTAGGTTGGCTCTTACACCCAATAGGCCTATGATAAGTC
1 AGGCTCTAAGGCCTCAAGGCAATCTCTTAGGTTGGCTCTTACACCCAATAGGCCGAGGATAAGTC
* * *
7564437 CTTATAGAAGCATTTATGGGGAACTATATATCAGTGTTCGGTTAGAGGGTATTATAGTGATTTAA
66 CTTATAGAAGCATTTATAGGGAACTACATATCAGTGTTCGATTAGAGGGTATTATAGTGATTTAA
*
7564502 AAAACCTGTTTTACTGAAATACACTACTACT-TTTTTTAAAACTACAATTTTATTGGGT
131 AAAACCTG-TTTACTGAAATAAACTACTACTGTTTTTTAAAACTACAATTTTATTGGGT
* * * * *
7564560 AGGCTCTAAGGCCTTAAGGCATTCTCTTAGGTTGG-T-TATACGCCCAATGGGCCGAGGGTAAGT
1 AGGCTCTAAGGCCTCAAGGCAATCTCTTAGGTTGGCTCT-TACACCCAATAGGCCGAGGATAAGT
* * * * * * *
7564623 TCTTATGGATGTAGTTT-TAGGGAACTGCATATCGGTGTTCGATTGGAGGGTATTATAGTGATTT
65 CCTTATAGAAGCA-TTTATAGGGAACTACATATCAGTGTTCGATTAGAGGGTATTATAGTGATTT
* *
7564687 TAAAAACCTGTTTACTGAAATAAACTACTATTGTTTTTTAAA
129 AAAAAACCTGTTTACTGAAATAAACTACTACTGTTTTTTAAA
7564729 CTATGATTTC
Statistics
Matches: 145, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
186 21 0.14
187 89 0.61
188 35 0.24
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (188 bp):
AGGCTCTAAGGCCTCAAGGCAATCTCTTAGGTTGGCTCTTACACCCAATAGGCCGAGGATAAGTC
CTTATAGAAGCATTTATAGGGAACTACATATCAGTGTTCGATTAGAGGGTATTATAGTGATTTAA
AAAACCTGTTTACTGAAATAAACTACTACTGTTTTTTAAAACTACAATTTTATTGGGT
Found at i:7565600 original size:47 final size:46
Alignment explanation
Indices: 7565545--7565638 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 46
7565535 AAATAATCCT
7565545 CCTTAATAAAATAATAAAAAAGTTTACGAATTTATTACAAATTTAAG
1 CCTTAATAAAATAATAAAAAAGTTTACGAATTTATTA-AAATTTAAG
* *
7565592 CCTTAATAAAATAATAAAAGAGTTTATGAATTTATTAAAATTTAAG
1 CCTTAATAAAATAATAAAAAAGTTTACGAATTTATTAAAATTTAAG
7565638 C
1 C
7565639 TCCAATTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 10 0.22
47 35 0.78
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (46 bp):
CCTTAATAAAATAATAAAAAAGTTTACGAATTTATTAAAATTTAAG
Found at i:7569144 original size:4 final size:4
Alignment explanation
Indices: 7569137--7569165 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7569127 AAACAAAGAA
7569137 AAAC AAAC AAAC AAAC AAAC AAAC AAAC A
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC A
7569166 CTCACGACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:7581929 original size:24 final size:24
Alignment explanation
Indices: 7581883--7581934 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7581873 AATTCTGTTA
* *
7581883 TGATACCTGACATGGATTCTGATC
1 TGATACCTGACATGAATTATGATC
* * *
7581907 TGATACTTGACCTGAATTATGATT
1 TGATACCTGACATGAATTATGATC
7581931 TGAT
1 TGAT
7581935 TTTTGATATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (24 bp):
TGATACCTGACATGAATTATGATC
Found at i:7582188 original size:114 final size:114
Alignment explanation
Indices: 7581988--7582277 Score: 368
Period size: 114 Copynumber: 2.5 Consensus size: 114
7581978 TATAGTTGGA
* * * **
7581988 GGAAGAATACTTGA-AGGTTCCTCGACTTTCTGCTGAGATCCTTACTGTTCGTGACGGGGAAGAA
1 GGAAGAATACTT-ACAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTTGAA
* * * *
7582052 TACTTGCAAGTTCCTCAGCTTTGTGCTGAGAGCCTTACTTTTCGTGACGG
65 TACTTACAAGTTCCTCAGCTTTGTACTGAGAGCCTTACTATTCATGACGG
*
7582102 GGAAGAATACTTACAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTATTCGTGACGGGGTTGAAT
1 GGAAGAATACTTACAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTTGAAT
7582167 ACTTAC-AGATTCCTCAGCTTTGTACTGAGAGCCTTACTATTCATGACGG
66 ACTTACAAG-TTCCTCAGCTTTGTACTGAGAGCCTTACTATTCATGACGG
** * * ** * * * *
7582216 GGTTGATTACTTGCAGGTTCCTTAGCTTTGTACTCAGGGCCTTACTGTTCATGACGGGGTTG
1 GGAAGAATACTTACAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTTG
7582278 TATGATTATG
Statistics
Matches: 153, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
113 3 0.02
114 150 0.98
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33
Consensus pattern (114 bp):
GGAAGAATACTTACAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTTGAAT
ACTTACAAGTTCCTCAGCTTTGTACTGAGAGCCTTACTATTCATGACGG
Found at i:7582275 original size:57 final size:57
Alignment explanation
Indices: 7581992--7582277 Score: 333
Period size: 57 Copynumber: 5.0 Consensus size: 57
7581982 GTTGGAGGAA
* * * * **
7581992 GAATACTTGA-AGGTTCCTC-GACTTTCTGCTGAGATCCTTACTGTTCGTGACGGGGAA
1 GAATACTT-ACAGGTTCCTCAG-CTTTGTACTGAGAGCCTTACTATTCGTGACGGGGTT
* * * * **
7582049 GAATACTTGCAAGTTCCTCAGCTTTGTGCTGAGAGCCTTACTTTTCGTGACGGGGAA
1 GAATACTTACAGGTTCCTCAGCTTTGTACTGAGAGCCTTACTATTCGTGACGGGGTT
* *
7582106 GAATACTTACAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTATTCGTGACGGGGTT
1 GAATACTTACAGGTTCCTCAGCTTTGTACTGAGAGCCTTACTATTCGTGACGGGGTT
* *
7582163 GAATACTTACAGATTCCTCAGCTTTGTACTGAGAGCCTTACTATTCATGACGGGGTT
1 GAATACTTACAGGTTCCTCAGCTTTGTACTGAGAGCCTTACTATTCGTGACGGGGTT
* * * * * * *
7582220 GATTACTTGCAGGTTCCTTAGCTTTGTACTCAGGGCCTTACTGTTCATGACGGGGTT
1 GAATACTTACAGGTTCCTCAGCTTTGTACTGAGAGCCTTACTATTCGTGACGGGGTT
7582277 G
1 G
7582278 TATGATTATG
Statistics
Matches: 205, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
57 204 1.00
58 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33
Consensus pattern (57 bp):
GAATACTTACAGGTTCCTCAGCTTTGTACTGAGAGCCTTACTATTCGTGACGGGGTT
Found at i:7583950 original size:30 final size:30
Alignment explanation
Indices: 7583877--7583950 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 30
7583867 ATTTCCTTCC
*
7583877 ATGAGCTACTATAGCCTTTGAGAGCTACTT
1 ATGAGCTACCATAGCCTTTGAGAGCTACTT
** *
7583907 ATGAGCTTTCATAGCCTTTGAGAGCTAGTT
1 ATGAGCTACCATAGCCTTTGAGAGCTACTT
*
7583937 ATGAGCTGCCATAG
1 ATGAGCTACCATAG
7583951 GATGCCAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (30 bp):
ATGAGCTACCATAGCCTTTGAGAGCTACTT
Found at i:7583983 original size:16 final size:16
Alignment explanation
Indices: 7583962--7583992 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7583952 ATGCCAAAGC
7583962 AAATAGTTAAATTGTT
1 AAATAGTTAAATTGTT
7583978 AAATAGTTAAATTGT
1 AAATAGTTAAATTGT
7583993 GGTGACCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (16 bp):
AAATAGTTAAATTGTT
Found at i:7593918 original size:21 final size:20
Alignment explanation
Indices: 7593894--7593944 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
7593884 TTTCCTCGAG
7593894 GGATCGATCCTTTTGGTGAAA
1 GGATCGATCCTTTT-GTGAAA
* * *
7593915 GGATTGTTCATTTTGTGAAA
1 GGATCGATCCTTTTGTGAAA
7593935 GGATCGATCC
1 GGATCGATCC
7593945 AAAGCGTTCC
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (20 bp):
GGATCGATCCTTTTGTGAAA
Found at i:7593998 original size:20 final size:19
Alignment explanation
Indices: 7593975--7594027 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 19
7593965 GTATCAATCC
7593975 CTTTTTCAAGGGGATTGATT
1 CTTTTTCAAGGGGATTGA-T
* *
7593995 CTTTGGTCAAAGGGATTGAT
1 CTTT-TTCAAGGGGATTGAT
7594015 CATTTTTCTAAGG
1 C-TTTTTC-AAGG
7594028 AATCGATCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.23, C:0.11, G:0.25, T:0.42
Consensus pattern (19 bp):
CTTTTTCAAGGGGATTGAT
Found at i:7597547 original size:18 final size:18
Alignment explanation
Indices: 7597520--7597571 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
7597510 ACTGAATATT
*
7597520 TGTCCTGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
7597538 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
7597556 TGTTCCGAAGGACCAC
1 TGTCCCGAAGGACCAC
7597572 GGATAATCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:7598252 original size:64 final size:64
Alignment explanation
Indices: 7598184--7598303 Score: 170
Period size: 64 Copynumber: 1.9 Consensus size: 64
7598174 CATAAATCCT
* * *
7598184 ATTCGATGTTTGTATTTT-AAGCGGGTGCATCGATGCACTACTTGTGCATCGATACATTGATGGC
1 ATTCGATGTTTGTATTTTAAAG-GAGTGCATCGATACACTACATGTGCATCGATACATTGATGGC
* * *
7598248 ATTCGATGTTTTTATTTTAAAGGAGTGCATCGATACACTTCATGTGCATTGATACA
1 ATTCGATGTTTGTATTTTAAAGGAGTGCATCGATACACTACATGTGCATCGATACA
7598304 CCTTGAAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
64 46 0.94
65 3 0.06
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.38
Consensus pattern (64 bp):
ATTCGATGTTTGTATTTTAAAGGAGTGCATCGATACACTACATGTGCATCGATACATTGATGGC
Found at i:7604465 original size:18 final size:18
Alignment explanation
Indices: 7604442--7604476 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7604432 ACTGAATATT
7604442 TGTCCCAAAAGACCACTA
1 TGTCCCAAAAGACCACTA
* *
7604460 TGTCCCGAATGACCACT
1 TGTCCCAAAAGACCACT
7604477 GCTAATCCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.20
Consensus pattern (18 bp):
TGTCCCAAAAGACCACTA
Found at i:7605159 original size:64 final size:64
Alignment explanation
Indices: 7605091--7605212 Score: 165
Period size: 64 Copynumber: 1.9 Consensus size: 64
7605081 ATATAAATCT
* * * *
7605091 CATTCGATGTTTGTATTTT-AAGCGGGTGCATCGATGCACTACTTGTGCATCGATACACTGATGG
1 CATTCGATGTTTGTATTTTAAAG-GAGTGCATCGATACACTACATGTGAATCGATACACTGATGG
* * *
7605155 CATTCGATGTTTTTATTTTAAAGGAGTGCATCGATACACTTCATGTGAATTGATACAC
1 CATTCGATGTTTGTATTTTAAAGGAGTGCATCGATACACTACATGTGAATCGATACAC
7605213 CTTGAACAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
64 47 0.94
65 3 0.06
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.36
Consensus pattern (64 bp):
CATTCGATGTTTGTATTTTAAAGGAGTGCATCGATACACTACATGTGAATCGATACACTGATGG
Found at i:7611362 original size:25 final size:25
Alignment explanation
Indices: 7611331--7611382 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
7611321 CGACTTACCC
7611331 TTATTTTAAATTAATTAAATCTTTA
1 TTATTTTAAATTAATTAAATCTTTA
7611356 TTATTTTAAATTAATTAAATCTTTA
1 TTATTTTAAATTAATTAAATCTTTA
7611381 TT
1 TT
7611383 TAATTAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TTATTTTAAATTAATTAAATCTTTA
Found at i:7611389 original size:25 final size:25
Alignment explanation
Indices: 7611331--7611401 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
7611321 CGACTTACCC
*
7611331 TTATTTTAAATTAATTAAATCTTTA
1 TTATATTAAATTAATTAAATCTTTA
*
7611356 TTATTTTAAATTAATTAAATCTTTA
1 TTATATTAAATTAATTAAATCTTTA
*
7611381 TT-TAATTAATTATAATTAAAT
1 TTAT-ATTAAAT-TAATTAAAT
7611402 ATTCAGGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
24 1 0.02
25 32 0.76
26 9 0.21
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (25 bp):
TTATATTAAATTAATTAAATCTTTA
Found at i:7619095 original size:19 final size:19
Alignment explanation
Indices: 7619053--7619096 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7619043 CTATTTCAGT
**
7619053 AAATAAAATAAAAAAATTA
1 AAATAAAATAAAAAAAGGA
* *
7619072 CAATAAAATTAAAAAAGGA
1 AAATAAAATAAAAAAAGGA
7619091 AAATAA
1 AAATAA
7619097 GATAGTTGAG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (19 bp):
AAATAAAATAAAAAAAGGA
Found at i:7621484 original size:2 final size:2
Alignment explanation
Indices: 7621477--7621505 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7621467 TTATTGTTCG
7621477 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7621506 TAACTTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7622272 original size:14 final size:14
Alignment explanation
Indices: 7622249--7622286 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
7622239 CAAGGGTATC
*
7622249 AGTACTGATAGAAT
1 AGTACCGATAGAAT
7622263 AGTACCGATAGAAT
1 AGTACCGATAGAAT
*
7622277 TGTACCGATA
1 AGTACCGATA
7622287 TTATAGGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.26
Consensus pattern (14 bp):
AGTACCGATAGAAT
Found at i:7622477 original size:95 final size:95
Alignment explanation
Indices: 7622357--7622556 Score: 278
Period size: 95 Copynumber: 2.1 Consensus size: 95
7622347 ACACCGACGA
* * * *
7622357 GGTAATATCGATACCATGGTAAGGGTATCGATACCAAGCATCATCG-ACGCTAAAATTGGTATCG
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAAGAAACATCGAAC-CTAAAATTGGCATCG
* *
7622421 ATACCAG-AATGGGGTATCGGTACAATAGTAT
65 ATACC-GTAAGGGGGTATCAGTACAATAGTAT
7622452 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAAGAAACATCGAACCTAAAATTGGCATCGA
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAAGAAACATCGAACCTAAAATTGGCATCGA
* *
7622517 TATCGTAAGGGGGTATCAGTACCATAGTAT
66 TACCGTAAGGGGGTATCAGTACAATAGTAT
* *
7622547 AGAAGTATCG
1 GGTAGTATCG
7622557 GTACAAGGGT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
94 1 0.01
95 90 0.97
96 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (95 bp):
GGTAGTATCGATACCATGGTAAGGGTATCGATACCAAGAAACATCGAACCTAAAATTGGCATCGA
TACCGTAAGGGGGTATCAGTACAATAGTAT
Found at i:7622572 original size:28 final size:27
Alignment explanation
Indices: 7622541--7622601 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
7622531 ATCAGTACCA
* *
7622541 TAGTATAGAAGTATCGGTACAAGGGTAG
1 TAGTATAGAAGCATCGGTACAA-GATAG
* *
7622569 TAGTATAGAAGCATCTGTACCAGATAG
1 TAGTATAGAAGCATCGGTACAAGATAG
7622596 TAGTAT
1 TAGTAT
7622602 CGATACTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 10 0.34
28 19 0.66
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (27 bp):
TAGTATAGAAGCATCGGTACAAGATAG
Found at i:7623137 original size:79 final size:79
Alignment explanation
Indices: 7623006--7623189 Score: 296
Period size: 79 Copynumber: 2.3 Consensus size: 79
7622996 GAACGAATGA
* * * *
7623006 ATAAAATAATAATGCGTATGGGTGCATTTTTGGCATGAAAGGATGCCATAGCTGAAACGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGACATAGCTGAAACGCATATG
*
7623071 GGTGCATTATCGAT
66 GGTGCATTATCGAC
*
7623085 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGACATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGACATAGCTGAAACGCATATG
*
7623150 GGTGCATTATCGGC
66 GGTGCATTATCGAC
*
7623164 ATAAAAGAATGATGCATATGGGTGCA
1 ATAAAAGAATAATGCATATGGGTGCA
7623190 CTAAGGCTAA
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 97 1.00
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.27
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGACATAGCTGAAACGCATATG
GGTGCATTATCGAC
Found at i:7623233 original size:26 final size:25
Alignment explanation
Indices: 7623204--7623279 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 25
7623194 GGCTAAAAAA
7623204 ATGCCATAAATAAAATGCATGAAGGG
1 ATGCCATAAATAAAATGCATGAA-GG
* *
7623230 ATG-CAT---T--AAGGCATGAAATG
1 ATGCCATAAATAAAATGCATG-AAGG
7623250 ATGCCATAAATAAAATGCATGGAAGG
1 ATGCCATAAATAAAATGCAT-GAAGG
7623276 ATGC
1 ATGC
7623280 ATTAAGGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
20 11 0.29
21 5 0.13
22 1 0.03
24 1 0.03
25 3 0.08
26 16 0.42
27 1 0.03
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.21
Consensus pattern (25 bp):
ATGCCATAAATAAAATGCATGAAGG
Found at i:7623235 original size:79 final size:79
Alignment explanation
Indices: 7623064--7623237 Score: 190
Period size: 79 Copynumber: 2.2 Consensus size: 79
7623054 TAGCTGAAAC
* * * * * **
7623064 GCATATGGGTGCATTATCGATATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGAT
1 GCATAAGGGTGCATTATCGACATAAAAGAATAATGCATATGGGTGCACTATAGGCATAAAAAAAT
** *
7623129 GACATAGCTGAAAT
66 GACATAAATAAAAT
* * *
7623143 GCATATGGGTGCATTATCGGCATAAAAGAATGATGCATATGGGTGCACTA-AGGC-TAAAAAAAT
1 GCATAAGGGTGCATTATCGACATAAAAGAATAATGCATATGGGTGCACTATAGGCATAAAAAAAT
*
7623206 GCCATAAATAAAAT
66 GACATAAATAAAAT
7623220 GCATGAAGGGATGCATTA
1 GCAT-AAGGG-TGCATTA
7623238 AGGCATGAAA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
77 20 0.25
78 7 0.09
79 53 0.66
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (79 bp):
GCATAAGGGTGCATTATCGACATAAAAGAATAATGCATATGGGTGCACTATAGGCATAAAAAAAT
GACATAAATAAAAT
Found at i:7623245 original size:20 final size:20
Alignment explanation
Indices: 7623220--7623390 Score: 99
Period size: 20 Copynumber: 7.7 Consensus size: 20
7623210 TAAATAAAAT
*
7623220 GCATGAAGGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
7623240 GCATGAAATGATGCCATAAATAAAAT
1 GCATGAAAGGATG-CAT---T--AAG
*
7623266 GCATGGAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
7623286 GCATGAAAGGATGCAATAATTAAAT
1 GCATGAAAGGATGC----ATT-AAG
*
7623311 GAATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
7623331 GCATTAAAGGATGTCATAAATAAAAT
1 GCATGAAAGGATG-CAT---T--AAG
*
7623357 GCATGAAAGTATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
7623377 GCATGAAATGATGC
1 GCATGAAAGGATGC
7623391 CATAAATAAA
Statistics
Matches: 116, Mismatches: 18, Indels: 34
0.69 0.11 0.20
Matches are distributed among these distances:
20 53 0.46
21 9 0.08
22 2 0.02
24 5 0.04
25 21 0.18
26 26 0.22
ACGTcount: A:0.43, C:0.09, G:0.25, T:0.23
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:7623260 original size:46 final size:46
Alignment explanation
Indices: 7623204--7623448 Score: 350
Period size: 46 Copynumber: 5.4 Consensus size: 46
7623194 GGCTAAAAAA
* *
7623204 ATGCCATAAATAAAATGCATGAAGGGATGCATTAAGGCATGAAATG
1 ATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGG
*
7623250 ATGCCATAAATAAAATGCATGGAAGGATGCATTAAGGCATGAAAGG
1 ATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGG
* * * *
7623296 ATGCAAT-AATTAAATGAATGAAAGGATGCATTAAGGCATTAAAGG
1 ATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGG
* * *
7623341 ATGTCATAAATAAAATGCATGAAAGTATGCATTAAGGCATGAAATG
1 ATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGG
* * *
7623387 ATGCCATAAATAAAATGTATGAAATGATGCATTAAGGCATGAAA-A
1 ATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGG
*
7623432 ATGCCATAAAGAAAATG
1 ATGCCATAAATAAAATG
7623449 AAATTTAACG
Statistics
Matches: 177, Mismatches: 21, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
45 55 0.31
46 122 0.69
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (46 bp):
ATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGG
Found at i:7623311 original size:91 final size:91
Alignment explanation
Indices: 7623204--7623448 Score: 339
Period size: 91 Copynumber: 2.7 Consensus size: 91
7623194 GGCTAAAAAA
* * *
7623204 ATGCCATAAATAAAATGCATGAAGGGATGCATTAAGGCATGAAATGATGCCATAAATAAAATGCA
1 ATGCAATAAATAAAATGAATGAAAGGATGCATTAAGGCATGAAA-GATGCCATAAATAAAATGCA
*
7623269 TGGAAGGATGCATTAAGGCATGAAAGG
65 TGAAAGGATGCATTAAGGCATGAAAGG
* * *
7623296 ATGCAAT-AATTAAATGAATGAAAGGATGCATTAAGGCATTAAAGGATGTCATAAATAAAATGCA
1 ATGCAATAAATAAAATGAATGAAAGGATGCATTAAGGCATGAAA-GATGCCATAAATAAAATGCA
* *
7623360 TGAAAGTATGCATTAAGGCATGAAATG
65 TGAAAGGATGCATTAAGGCATGAAAGG
* * * * *
7623387 ATGCCATAAATAAAATGTATGAAATGATGCATTAAGGCATGAAAAATGCCATAAAGAAAATG
1 ATGCAATAAATAAAATGAATGAAAGGATGCATTAAGGCATGAAAGATGCCATAAATAAAATG
7623449 AAATTTAACG
Statistics
Matches: 134, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
91 96 0.72
92 38 0.28
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (91 bp):
ATGCAATAAATAAAATGAATGAAAGGATGCATTAAGGCATGAAAGATGCCATAAATAAAATGCAT
GAAAGGATGCATTAAGGCATGAAAGG
Found at i:7627643 original size:23 final size:23
Alignment explanation
Indices: 7627600--7627661 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
7627590 TTAGTGTAGA
* *
7627600 GGGAATCGATACCTCCC-TTGAAG
1 GGGAACCGATTCC-CCCTTTGAAG
7627623 GGGAA-CGAATTCCCCCTTTGAAG
1 GGGAACCG-ATTCCCCCTTTGAAG
7627646 GGGAACCGATTCCCCC
1 GGGAACCGATTCCCCC
7627662 CACAGGGGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
22 5 0.14
23 28 0.80
24 2 0.06
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (23 bp):
GGGAACCGATTCCCCCTTTGAAG
Found at i:7627670 original size:21 final size:21
Alignment explanation
Indices: 7627644--7627683 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7627634 CCCCCTTTGA
*
7627644 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
7627665 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
7627684 TGAGGGTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:7627689 original size:21 final size:22
Alignment explanation
Indices: 7627600--7627686 Score: 72
Period size: 23 Copynumber: 3.9 Consensus size: 22
7627590 TTAGTGTAGA
*
7627600 GGGAATCGATACCTCCCTTGAAG
1 GGGAATCGATACC-CCCCTGAAG
* *
7627623 GGGAA-CGAATTCCCCCTTTGAAG
1 GGGAATCG-ATACCCCC-CTGAAG
* *
7627646 GGGAACCGATTCCCCCC--ACAG
1 GGGAATCGATACCCCCCTGA-AG
7627667 GGGAATCGATACCCCCCTGA
1 GGGAATCGATACCCCCCTGA
7627687 GGGTTATGGT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
20 1 0.02
21 17 0.31
22 5 0.09
23 29 0.54
24 2 0.04
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.17
Consensus pattern (22 bp):
GGGAATCGATACCCCCCTGAAG
Found at i:7629271 original size:18 final size:18
Alignment explanation
Indices: 7629250--7629290 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
7629240 AGAACAGCAC
* *
7629250 GAGGAACAAGCTCCACCA
1 GAGGAACAAGCACAACCA
7629268 GAGGAACAAGCACAACCA
1 GAGGAACAAGCACAACCA
7629286 GAGGA
1 GAGGA
7629291 CTCCATACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.27, G:0.27, T:0.02
Consensus pattern (18 bp):
GAGGAACAAGCACAACCA
Found at i:7631457 original size:2 final size:2
Alignment explanation
Indices: 7631444--7631483 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
7631434 AAAAAAACAA
7631444 AT AT -T AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7631484 TTAAAAAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7634889 original size:14 final size:15
Alignment explanation
Indices: 7634870--7634906 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
7634860 GAAAATTAGT
7634870 AAATAAAATGAAT-A
1 AAATAAAATGAATCA
*
7634884 AAATAAAATGATTCA
1 AAATAAAATGAATCA
7634899 AAATAAAA
1 AAATAAAA
7634907 AAACGAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (15 bp):
AAATAAAATGAATCA
Found at i:7636595 original size:49 final size:49
Alignment explanation
Indices: 7636542--7636715 Score: 276
Period size: 49 Copynumber: 3.6 Consensus size: 49
7636532 AATACCATGA
* *
7636542 GTGGCACCTTTTATGACGAAATGCATCGTTATACATTTAACTTTCATTT
1 GTGGCACCTTTTATGCCGAAATGCACCGTTATACATTTAACTTTCATTT
7636591 GTGGCACCTTTTATGCCGAAATGCACCGTTATACATTTAACTTTCATTT
1 GTGGCACCTTTTATGCCGAAATGCACCGTTATACATTTAACTTTCATTT
* * *
7636640 GTGGCACATTTTATGCCAAAATGCACCGTTATGCATTTAACTTTCATTT
1 GTGGCACCTTTTATGCCGAAATGCACCGTTATACATTTAACTTTCATTT
* **
7636689 GTGACACCTTTTATGCTAAAATGCACC
1 GTGGCACCTTTTATGCCGAAATGCACC
7636716 TATGACTCTC
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 117 1.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (49 bp):
GTGGCACCTTTTATGCCGAAATGCACCGTTATACATTTAACTTTCATTT
Found at i:7637360 original size:18 final size:18
Alignment explanation
Indices: 7637337--7637383 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
7637327 CCTTTCTCTT
7637337 AGTATCGATACCCACATC
1 AGTATCGATACCCACATC
7637355 AGTATCGATACCCACATC
1 AGTATCGATACCCACATC
7637373 AGTATCGATAC
1 AGTATCGATAC
7637384 TAATTGCATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (18 bp):
AGTATCGATACCCACATC
Found at i:7638693 original size:27 final size:27
Alignment explanation
Indices: 7638637--7638734 Score: 94
Period size: 24 Copynumber: 3.6 Consensus size: 27
7638627 AAACTATATA
**
7638637 ATATATTATATGAATACATTTTCAAAAACT
1 ATATATTATAT--ATATTTTTTC-AAAACT
7638667 ATATATTATATATATTTTTTCAAAACT
1 ATATATTATATATATTTTTTCAAAACT
* *
7638694 ATATA--CTATAT-TTTTTTAAAAACT
1 ATATATTATATATATTTTTTCAAAACT
7638718 ATATTATATATATATAT
1 ATA-TAT-TATATATAT
7638735 ATATATTATA
Statistics
Matches: 58, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
24 15 0.26
25 7 0.12
27 11 0.19
28 13 0.22
29 1 0.02
30 11 0.19
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.48
Consensus pattern (27 bp):
ATATATTATATATATTTTTTCAAAACT
Found at i:7638756 original size:17 final size:18
Alignment explanation
Indices: 7638715--7638756 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
7638705 TTTTTTAAAA
*
7638715 ACTATATTATATATATAT
1 ACTATATTATACATATAT
*
7638733 ATATATATTATACAT-TAT
1 A-CTATATTATACATATAT
7638751 ACTATA
1 ACTATA
7638757 AATATTGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
17 4 0.20
18 5 0.25
19 11 0.55
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (18 bp):
ACTATATTATACATATAT
Found at i:7638772 original size:21 final size:20
Alignment explanation
Indices: 7638718--7638772 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
7638708 TTTAAAAACT
*
7638718 ATATTATAT-ATATATATAT
1 ATATTATATAATATATATAA
* *
7638737 ATATTATACATTATACTATAA
1 ATATTATATAATATA-TATAA
*
7638758 ATATTGTATAATATA
1 ATATTATATAATATA
7638773 AATATAGAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 8 0.29
20 4 0.14
21 16 0.57
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (20 bp):
ATATTATATAATATATATAA
Found at i:7652568 original size:34 final size:34
Alignment explanation
Indices: 7652530--7653586 Score: 1485
Period size: 34 Copynumber: 30.8 Consensus size: 34
7652520 TGGATGGATT
7652530 TGCTTCACTACTCTT-TGGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCT-GTGAAGGCTTAAGATGG
* * *
7652564 TGCTTCACTACTCCTCTGTGAAGGCTTACGATGAT
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATG-G
* *
7652599 TGTTTCACTACTCTT-TGGTGAAGTCTTAAGATGG
1 TGCTTCACTACTCTTCT-GTGAAGGCTTAAGATGG
*
7652633 TGCTTCACTACTCCTCTGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
7652667 TG-TTCCACTACTCTTCTGTGAAGGCTTAAGATGG
1 TGCTT-CACTACTCTTCTGTGAAGGCTTAAGATGG
* *
7652701 TACTTCACTACTCTTATGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
7652735 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* * *
7652769 TGCTCCACTACTCTTCTATGAAGGGTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
*
7652803 TGCTTCACTACTCTTCTGTGAAGGGTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
7652837 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
*
7652871 TGCTTCACTACTCTTCTGTAAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
7652905 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* *
7652939 TGCTTCACTACTCTTCTATGAAGGCTTCAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* *
7652973 TGCTTCACTACTCTTCTATGAAGGCTTAAGATAG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
7653007 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
7653041 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* *
7653075 TGCTTCACTACTCTTATGTGAAGGCTTGAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* * * *
7653109 TGCTTCAATACTCTTCTGTGATGGCTTGAGATTG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
7653143 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
** * *
7653177 TATTTCACTACTCTTCTATGAAGGCTTGAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
*
7653211 TGCTTCACTACTCTTCTGTGAAGGCTTCAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
7653245 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* * *
7653279 TGCTTCACTTCTCTTCTGTTAAGGCTTGAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* *
7653313 TGCTTCACTACTCTTCTATGAAGGCTTGAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
*
7653347 TGCTTCACTACTCTTCTGTGAAGGCTTGAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
*
7653381 TGCTTCACTACTCTTCTGTGAAGGCTTGAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* * * *
7653415 TTCTTCACTACTCTTCAGTGAAGCCTTCAGATGG
1 TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* * * *
7653449 TTTGCTTCACTATTCTCCGGTGAAGGCTTCAGATGG
1 --TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* * * * * *
7653485 TTTGCTTCACTATTCTCCGGTAAAGGCTTCATATGG
1 --TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
* *
7653521 TTTGCTTCACTATTC-TCTGGTGAAGGCTTCAGATGG
1 --TGCTTCACTACTCTTCT-GTGAAGGCTTAAGATGG
*
7653557 TTTGCTTCACTATTC-TCTGGTGAAGGCTTA
1 --TGCTTCACTACTCTTCT-GTGAAGGCTTA
7653587 GGATTGACCT
Statistics
Matches: 942, Mismatches: 72, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
33 2 0.00
34 786 0.83
35 32 0.03
36 122 0.13
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (34 bp):
TGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
Found at i:7654969 original size:125 final size:125
Alignment explanation
Indices: 7654744--7655120 Score: 540
Period size: 125 Copynumber: 3.0 Consensus size: 125
7654734 TTGCTGTAAT
* * * *
7654744 ATTATCTCATACTGGTACGGGCCTTCAAAATGCCCCAACAGCTCAAATCGTAAGGCTCATTC-TC
1 ATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATTCTTC
* * * *
7654808 AATGCCTTCTTGGTCTGAATCTTGTCATCTCGACATGATGGGGGTTCAGTCATGCCCCAAC
66 -ATGCCTCCTTGGTCTGAATCTTGTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAAC
* *
7654869 ATTATCTTATACTGGTATGGGCCTTCAAAATGTCCCATCACCTCAAATTGTAAGGCTCATTCTTC
1 ATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATTCTTC
* * *
7654934 ATGCCTCCTTGGTCTGAATGTTGTCATCTCAACATGATGTGGGTTTAGTCGTACCCCAAC
66 ATGCCTCCTTGGTCTGAATCTTGTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAAC
* * * * * *
7654994 ACTGTATTATACTGGTACGAGCCTTCAAAATCCCCCATCACCTCAAATTGTAAGGCTCATTCTTT
1 ATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATTCTTC
* * *
7655059 ATGCCTCCTTGATCTGAATCTCGTCATCTGAACATGATGTGGGTTCAGTCGTGCCCCAAC
66 ATGCCTCCTTGGTCTGAATCTTGTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAAC
7655119 AT
1 AT
7655121 ATCATAACTT
Statistics
Matches: 223, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
125 221 0.99
126 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.32
Consensus pattern (125 bp):
ATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATTCTTC
ATGCCTCCTTGGTCTGAATCTTGTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAAC
Found at i:7655565 original size:124 final size:123
Alignment explanation
Indices: 7655328--7655650 Score: 434
Period size: 124 Copynumber: 2.6 Consensus size: 123
7655318 GGAAAGTGTT
* * * *
7655328 CTTCATCCATTCTGAT-TTCTTAGACCATCTGCTACACGATCACGGAATGCTTCATGTTTTGGCA
1 CTTCATCCATTCTGATCTT-TTAGACCATCTGCTTCAAGATCATGGAATGCTTCATGTTCTGGCA
*
7655392 TCGCTTATTCTTCCTGATAGGTTACTGACAACGTCACAAGGAAATATTACAATTTCTTC
65 TCGCTTATTCTTCCTGACAGGTTACTGACAACGTCACAAGGAAATATTACAATTTCTTC
* * *
7655451 CTTCATTCATTCTGATCTTTTAGACCATCTGTTTCAAGATCATGGAATGCTTCATATTCTGGTCA
1 CTTCATCCATTCTGATCTTTTAGACCATCTGCTTCAAGATCATGGAATGCTTCATGTTCTGG-CA
*
7655516 TTG-TGTATTCTTCCTGACAGGTTACTGACAACGTCACAAGGAAATATTACAATTTCTTC
65 TCGCT-TATTCTTCCTGACAGGTTACTGACAACGTCACAAGGAAATATTACAATTTCTTC
* * * * * * * * * *
7655575 CTTCATCCATTCTGACCTCTTGGATCGTATGCTTCAAGATCGTAGAATGCTTCATGTTCTAGCAC
1 CTTCATCCATTCTGATCTTTTAGACCATCTGCTTCAAGATCATGGAATGCTTCATGTTCTGGCAT
7655640 CGCTTATTCTT
66 CGCTTATTCTT
7655651 TTTCTCCAAT
Statistics
Matches: 173, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
123 63 0.36
124 110 0.64
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (123 bp):
CTTCATCCATTCTGATCTTTTAGACCATCTGCTTCAAGATCATGGAATGCTTCATGTTCTGGCAT
CGCTTATTCTTCCTGACAGGTTACTGACAACGTCACAAGGAAATATTACAATTTCTTC
Found at i:7656593 original size:15 final size:15
Alignment explanation
Indices: 7656570--7656632 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
7656560 GTGAATTTTC
* *
7656570 TTTCCTTTTTTTTAT
1 TTTCATTTTTTTCAT
7656585 TTTCATTTTTTTCAT
1 TTTCATTTTTTTCAT
* *
7656600 TTTCAAATTTTTTCTT
1 TTTC-ATTTTTTTCAT
*
7656616 TTTCTTTTTCTTTCAT
1 TTTCATTTT-TTTCAT
7656632 T
1 T
7656633 CTTTCTTTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
15 20 0.51
16 19 0.49
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTCATTTTTTTCAT
Found at i:7656610 original size:16 final size:15
Alignment explanation
Indices: 7656576--7656619 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
7656566 TTTCTTTCCT
* *
7656576 TTTTTTTATTTTCAT
1 TTTTTTCATTTTCAA
7656591 TTTTTTCATTTTCAAA
1 TTTTTTCATTTTC-AA
*
7656607 TTTTTTCTTTTTC
1 TTTTTTCATTTTC
7656620 TTTTTCTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTTCATTTTCAA
Found at i:7658973 original size:6 final size:6
Alignment explanation
Indices: 7658960--7658996 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
7658950 AAACAAAAAC
7658960 ATGC-A ATGCAA ATGCAA ATGCCAA ATGCAA ATGCAA A
1 ATGCAA ATGCAA ATGCAA ATG-CAA ATGCAA ATGCAA A
7658997 AGGTGTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 4 0.13
6 20 0.67
7 6 0.20
ACGTcount: A:0.49, C:0.19, G:0.16, T:0.16
Consensus pattern (6 bp):
ATGCAA
Found at i:7658986 original size:13 final size:13
Alignment explanation
Indices: 7658960--7658993 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
7658950 AAACAAAAAC
7658960 ATGC-AATG-CAA
1 ATGCAAATGCCAA
7658971 ATGCAAATGCCAA
1 ATGCAAATGCCAA
7658984 ATGCAAATGC
1 ATGCAAATGC
7658994 AAAAGGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.19
12 4 0.19
13 13 0.62
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.18
Consensus pattern (13 bp):
ATGCAAATGCCAA
Found at i:7666625 original size:31 final size:32
Alignment explanation
Indices: 7666582--7666657 Score: 95
Period size: 31 Copynumber: 2.4 Consensus size: 32
7666572 TAGTCAATAG
* *
7666582 ATTTCAATGGCTAAG-ATGAATACCATAGACA
1 ATTTCAAGGGCTAAGAATGAACACCATAGACA
*
7666613 ACTTT-GAGGGCT-AGAATGAACACCATAGACA
1 A-TTTCAAGGGCTAAGAATGAACACCATAGACA
7666644 ATTTCAAGGGCTAA
1 ATTTCAAGGGCTAA
7666658 ATTGATACAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
30 5 0.14
31 28 0.76
32 4 0.11
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (32 bp):
ATTTCAAGGGCTAAGAATGAACACCATAGACA
Found at i:7670592 original size:19 final size:16
Alignment explanation
Indices: 7670547--7670580 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7670537 TCGAGAAATC
7670547 ATACTAAAATAACTTG
1 ATACTAAAATAACTTG
*
7670563 ATATTAAAATAACTTG
1 ATACTAAAATAACTTG
7670579 AT
1 AT
7670581 TCGACTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (16 bp):
ATACTAAAATAACTTG
Found at i:7670777 original size:5 final size:5
Alignment explanation
Indices: 7670762--7670796 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
7670752 TTCATATGAT
7670762 TAAAA TAAAAA TAAAA TAAAA TAAAA TAAAA TAAA
1 TAAAA T-AAAA TAAAA TAAAA TAAAA TAAAA TAAA
7670797 GAATAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:7672576 original size:42 final size:42
Alignment explanation
Indices: 7672513--7672606 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 42
7672503 AAGAATGGCT
* * *
7672513 TGAAGGACTT-ATCATCTTGCTCGAAAGGCTTA-TAGATGACC
1 TGAAGGATTTAATCATCATGCTCGAAAGACTTACT-GATGACC
7672554 TGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGACC
1 TGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGACC
*
7672596 CGAAGGATTTA
1 TGAAGGATTTA
7672607 CAAATCAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
41 9 0.19
42 37 0.79
43 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (42 bp):
TGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGACC
Found at i:7673107 original size:42 final size:42
Alignment explanation
Indices: 7673056--7673137 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
7673046 AAGGTCTTAT
*
7673056 CATCTTGCTCGAAATG-CTTACAAATGACCCGAAGGATTTAAG
1 CATCATGCTCGAAA-GACTTACAAATGACCCGAAGGATTTAAG
*
7673098 CATCATGCTCGAAAGACTTACTAATGACCCGAAGGATTTA
1 CATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTTA
7673138 CAAATCAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 1 0.03
42 36 0.97
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
CATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTTAAG
Found at i:7673138 original size:20 final size:20
Alignment explanation
Indices: 7673073--7673138 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
7673063 CTCGAAATGC
*
7673073 TTACAAATGACCCGAAGGAT
1 TTACTAATGACCCGAAGGAT
* * * *
7673093 TTAAGCATCATG-CTCGAAAGAC
1 TT-A-C-TAATGACCCGAAGGAT
7673115 TTACTAATGACCCGAAGGAT
1 TTACTAATGACCCGAAGGAT
7673135 TTAC
1 TTAC
7673139 AAATCAAGAA
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
19 4 0.12
20 14 0.42
21 2 0.06
22 10 0.30
23 3 0.09
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (20 bp):
TTACTAATGACCCGAAGGAT
Found at i:7673216 original size:266 final size:266
Alignment explanation
Indices: 7672495--7673387 Score: 1375
Period size: 265 Copynumber: 3.4 Consensus size: 266
7672485 ATTCTATCCG
* * * * *
7672495 AAGGTCTTA-AGAATGGCTTGAAGGACTTATCATCTTGCTCGAAAGGCTTATAGATGACCTGAAG
1 AAGGTCTTATAG-ATGGCTAGAAGGTCTTATCATCTTGCTCGAAAGGCTTACAAATGACCCGAAG
*
7672559 GATTTAATCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTACAAATCAAGAAACCCTT
65 GATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTACAAATCAAGAAACCCTT
7672624 GAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTTTTTAGGCTTAGCTTCCTTTAACAA
130 GAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTTTTTAGGCTTAGCTTCCTTTAACAA
7672689 CTCTTTTGAGATAATTAAGAAACCCCATAAAGGCTTAGTTTTTTAAAATCTCATTTGAAAACATC
195 CTCTTTTGAGATAATTAAGAAACCCCATAAAGGCTTAGTTTTTTAAAATCTCATTTGAAAACATC
*
7672754 CAGCCCGA
260 CTGCCC-A
* * ** * *
7672762 AA-GTCTTATGGATAGCCCGAA-GTCTTATCATCTTGCTCGAAAGGCTAACAAATGACCCAAAGG
1 AAGGTCTTATAGATGGCTAGAAGGTCTTATCATCTTGCTCGAAAGGCTTACAAATGACCCGAAGG
*
7672825 ATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAATGATTTACAAATCAAGAAACCCTTG
66 ATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTACAAATCAAGAAACCCTTG
7672890 AAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTTTTTAGGCTTAGCTTCCTTTAACAAC
131 AAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTTTTTAGGCTTAGCTTCCTTTAACAAC
* *
7672955 TCCTTTGAGATTATTAAGAAACCCCATAAAGGCTTAGTTTTTTAAAATCTCATTTGAAAACATCC
196 TCTTTTGAGATAATTAAGAAACCCCATAAAGGCTTAGTTTTTTAAAATCTCATTTGAAAACATCC
7673020 TGCCCA
261 TGCCCA
*
7673026 AAGGTCTTATAGATGGCTAGAAGGTCTTATCATCTTGCTCGAAATGCTTACAAATGACCCGAAGG
1 AAGGTCTTATAGATGGCTAGAAGGTCTTATCATCTTGCTCGAAAGGCTTACAAATGACCCGAAGG
*
7673091 ATTTAAGCATCATGCTCGAAAGACTTACTAATGACCCGAAGGATTTACAAATCAAGAAACCCTTG
66 ATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTACAAATCAAGAAACCCTTG
* *
7673156 AAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTTTTTAGGCTTAACTTCCTTTAACATC
131 AAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTTTTTAGGCTTAGCTTCCTTTAACAAC
7673221 TCTTTTGAGATAATTAAGAAACCCCATAAAGGCTTAG-TTTTTAAAATCTCATTTGAAAACATCC
196 TCTTTTGAGATAATTAAGAAACCCCATAAAGGCTTAGTTTTTTAAAATCTCATTTGAAAACATCC
7673285 T--CC-
261 TGCCCA
* * *
7673288 -----C----------C--GAATGTCTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGG
1 AAGGTCTTATAGATGGCTAGAAGGTCTTATCATCTTGCTCGAAAGGCTTACAAATGACCCGAAGG
* *
7673336 ATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACAAAT
66 ATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTACAAAT
7673388 TCGGGAAATA
Statistics
Matches: 588, Mismatches: 35, Indels: 28
0.90 0.05 0.04
Matches are distributed among these distances:
245 91 0.15
247 1 0.00
257 1 0.00
263 2 0.00
264 3 0.01
265 274 0.47
266 213 0.36
267 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (266 bp):
AAGGTCTTATAGATGGCTAGAAGGTCTTATCATCTTGCTCGAAAGGCTTACAAATGACCCGAAGG
ATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTACAAATCAAGAAACCCTTG
AAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTTTTTAGGCTTAGCTTCCTTTAACAAC
TCTTTTGAGATAATTAAGAAACCCCATAAAGGCTTAGTTTTTTAAAATCTCATTTGAAAACATCC
TGCCCA
Found at i:7675608 original size:20 final size:20
Alignment explanation
Indices: 7675583--7675623 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7675573 AACCATTCAA
7675583 GGGGAATCGGTACCCCCTGG
1 GGGGAATCGGTACCCCCTGG
* *
7675603 GGGGAATCGGTTCCCTCTGG
1 GGGGAATCGGTACCCCCTGG
7675623 G
1 G
7675624 CAATCTACCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.41, T:0.20
Consensus pattern (20 bp):
GGGGAATCGGTACCCCCTGG
Found at i:7678357 original size:40 final size:40
Alignment explanation
Indices: 7678310--7678389 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
7678300 TTGGCAACTC
7678310 ATATATTGAAAATTAATCATGTTCAATCAATCAATTTTAT
1 ATATATTGAAAATTAATCATGTTCAATCAATCAATTTTAT
7678350 ATATATTGAAAATTAATCATGTTCAATCAATCAATTTTAT
1 ATATATTGAAAATTAATCATGTTCAATCAATCAATTTTAT
7678390 CCTTAAACTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (40 bp):
ATATATTGAAAATTAATCATGTTCAATCAATCAATTTTAT
Found at i:7684969 original size:17 final size:16
Alignment explanation
Indices: 7684947--7684991 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 16
7684937 CCTTTTTTTC
7684947 TTTTTCTTTTCATCTTT
1 TTTTTCTTTTC-TCTTT
7684964 TTTTTCTTTTTCTCTTT
1 TTTTTC-TTTTCTCTTT
7684981 TTATTTCTTTT
1 TT-TTTCTTTT
7684992 TTCTAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTCTTTTCTCTTT
Found at i:7684979 original size:25 final size:23
Alignment explanation
Indices: 7684939--7684995 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 23
7684929 TTCTTCTTCC
7684939 TTTTTTTC-TTTTTCTTTTCATCT
1 TTTTTTTCTTTTTTCTTTTCAT-T
*
7684962 TTTTTTTCTTTTTCTCTTTTTATT
1 TTTTTTTCTTTTT-TCTTTTCATT
7684986 TCTTTTTTCT
1 T-TTTTTTCT
7684996 AATGAATGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 8 0.27
24 6 0.20
25 16 0.53
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTTCTTTTTTCTTTTCATT
Found at i:7684991 original size:23 final size:23
Alignment explanation
Indices: 7684942--7684991 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
7684932 TTCTTCCTTT
* *
7684942 TTTTCTTTTTCTTTTCATCTTTT
1 TTTTCTTTTTCTTTTCATATTTC
*
7684965 TTTTCTTTTTCTCTTT-TTATTTC
1 TTTTCTTTTTCT-TTTCATATTTC
7684988 TTTT
1 TTTT
7684992 TTCTAATGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTTCTTTTTCTTTTCATATTTC
Found at i:7684992 original size:18 final size:18
Alignment explanation
Indices: 7684947--7684992 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
7684937 CCTTTTTTTC
7684947 TTTTTC-TTTTCATCTTT
1 TTTTTCTTTTTCATCTTT
7684964 TTTTTCTTTTTC-TCTTT
1 TTTTTCTTTTTCATCTTT
7684981 TTATTTCTTTTT
1 TT-TTTCTTTTT
7684993 TCTAATGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTCTTTTTCATCTTT
Found at i:7685471 original size:7 final size:7
Alignment explanation
Indices: 7685459--7685492 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
7685449 AAATCAATCC
7685459 CTTTTTT
1 CTTTTTT
7685466 CTTTTTT
1 CTTTTTT
7685473 CTTTTTT
1 CTTTTTT
7685480 CTTTTTT
1 CTTTTTT
7685487 CTTTTT
1 CTTTTT
7685493 CTCCTCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
CTTTTTT
Found at i:7685525 original size:15 final size:15
Alignment explanation
Indices: 7685459--7685517 Score: 70
Period size: 14 Copynumber: 4.0 Consensus size: 15
7685449 AAATCAATCC
7685459 CTTTTT-TCTTTTTT
1 CTTTTTCTCTTTTTT
7685473 CTTTTT-TCTTTTTT
1 CTTTTTCTCTTTTTT
7685487 CTTTTTCTCCTCTTTTT
1 CTTTTTCT-CT-TTTTT
*
7685504 -TTCTTCTCTTTTTT
1 CTTTTTCTCTTTTTT
7685518 TTTCTTCTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
14 25 0.61
15 3 0.07
16 8 0.20
17 5 0.12
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
CTTTTTCTCTTTTTT
Found at i:7685526 original size:13 final size:13
Alignment explanation
Indices: 7685460--7685526 Score: 66
Period size: 13 Copynumber: 4.9 Consensus size: 13
7685450 AATCAATCCC
*
7685460 TTTTTTCTTTTTT
1 TTTTTTCTTCTTT
7685473 CTTTTTTCTT-TTT
1 -TTTTTTCTTCTTT
7685486 TCTTTTTCTCCTCTTT
1 T-TTTTTCT--TCTTT
7685502 TTTTCTTC-TCTTT
1 TTTT-TTCTTCTTT
7685515 TTTTTTCTTCTT
1 TTTTTTCTTCTT
7685527 ACTTCAAGCA
Statistics
Matches: 47, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
12 4 0.09
13 23 0.49
14 9 0.19
15 4 0.09
16 7 0.15
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTCTTCTTT
Found at i:7690257 original size:19 final size:19
Alignment explanation
Indices: 7690233--7690272 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7690223 ACACTTCTCC
7690233 CATTTATCATTTTAAAACA
1 CATTTATCATTTTAAAACA
7690252 CATTTATCATTTTAAAACA
1 CATTTATCATTTTAAAACA
7690271 CA
1 CA
7690273 CTTAAAACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (19 bp):
CATTTATCATTTTAAAACA
Found at i:7690291 original size:12 final size:12
Alignment explanation
Indices: 7690263--7690297 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
7690253 ATTTATCATT
7690263 TTAAAACACAC-
1 TTAAAACACACA
7690274 TTAAAACACACA
1 TTAAAACACACA
7690286 TTAAAACACACA
1 TTAAAACACACA
7690298 CTTACACTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 11 0.48
12 12 0.52
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (12 bp):
TTAAAACACACA
Found at i:7692586 original size:20 final size:20
Alignment explanation
Indices: 7692557--7692594 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7692547 CCTATTCAAA
*
7692557 GGGGGAATCGGTTCCCTCAT
1 GGGGGAATCGATTCCCTCAT
*
7692577 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
7692595 TGCACCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAT
Found at i:7700072 original size:16 final size:16
Alignment explanation
Indices: 7700051--7700084 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7700041 TCGAGAAATC
*
7700051 ATATTAAAATAATTTG
1 ATATTAAAATAACTTG
7700067 ATATTAAAATAACTTG
1 ATATTAAAATAACTTG
7700083 AT
1 AT
7700085 TCGACTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (16 bp):
ATATTAAAATAACTTG
Found at i:7700283 original size:11 final size:11
Alignment explanation
Indices: 7700267--7700296 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
7700257 TCATATGATT
7700267 AAAATAAAATA
1 AAAATAAAATA
7700278 AAAATAAAATA
1 AAAATAAAATA
7700289 AATAATAA
1 AA-AATAA
7700297 TAATTAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:7704395 original size:15 final size:17
Alignment explanation
Indices: 7704375--7704412 Score: 53
Period size: 15 Copynumber: 2.3 Consensus size: 17
7704365 TGAATAATGG
7704375 TTTATAT-GAT-TGCTT
1 TTTATATCGATATGCTT
7704390 TTTATATCGATATGCTT
1 TTTATATCGATATGCTT
7704407 TATTAT
1 T-TTAT
7704413 TTATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 7 0.35
16 3 0.15
17 6 0.30
18 4 0.20
ACGTcount: A:0.24, C:0.08, G:0.11, T:0.58
Consensus pattern (17 bp):
TTTATATCGATATGCTT
Found at i:7707697 original size:2 final size:2
Alignment explanation
Indices: 7707690--7707729 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7707680 CTGACACTGC
*
7707690 AT AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7707730 GAAAATAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7708310 original size:3 final size:3
Alignment explanation
Indices: 7708304--7708393 Score: 96
Period size: 3 Copynumber: 29.7 Consensus size: 3
7708294 TTCATTTGAA
* * *
7708304 TAT TAT T-T ATAT TAT TAT TAT TAT TAT AAT TAT AAT AAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7708349 TAT TAT TAT TA- TAT ATAT ATAT TAT TA- TAT ATAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TA
7708394 AAAAATAATT
Statistics
Matches: 77, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
2 5 0.06
3 61 0.79
4 11 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:7709590 original size:13 final size:13
Alignment explanation
Indices: 7709572--7709610 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7709562 TTTCAATTTT
*
7709572 TATTTATTTTATA
1 TATTTATTTTAAA
7709585 TATTTATTTTAAA
1 TATTTATTTTAAA
*
7709598 TATATAGTTTTAA
1 TATTTA-TTTTAA
7709611 TTTTGTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (13 bp):
TATTTATTTTAAA
Found at i:7710554 original size:24 final size:24
Alignment explanation
Indices: 7710497--7710554 Score: 57
Period size: 24 Copynumber: 2.4 Consensus size: 24
7710487 TTTTTTTATA
* *
7710497 TATACTTATTATTTTCATAGTATT
1 TATATTTATTATTTTCATAATATT
*
7710521 TATATATATTATTTT-ATTAATATT
1 TATATTTATTATTTTCA-TAATATT
7710545 TCAT-TTTATT
1 T-ATATTTATT
7710555 TGCAAGTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.04
24 25 0.89
25 2 0.07
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (24 bp):
TATATTTATTATTTTCATAATATT
Found at i:7713853 original size:15 final size:15
Alignment explanation
Indices: 7713833--7713864 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7713823 GATCAATACC
7713833 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
7713848 TTTTGCATACATTCA
1 TTTTGCATACATGCA
7713863 TT
1 TT
7713865 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:7716368 original size:17 final size:18
Alignment explanation
Indices: 7716345--7716464 Score: 106
Period size: 17 Copynumber: 6.5 Consensus size: 18
7716335 ATTATGCTTG
7716345 AAGAAAAAATGAAAAAAT
1 AAGAAAAAATGAAAAAAT
7716363 AA-AAAAAATGAAAAAAT
1 AAGAAAAAATGAAAAAAT
7716380 AA-AAAAAATGAAGAAAAGAAT
1 AAGAAAAAAT---GAAAA-AAT
*
7716401 AAAAGAAAAAATGAAGAAAT
1 --AAGAAAAAATGAAAAAAT
7716421 GAAGAAAAAATGAAAAAGA-
1 -AAGAAAAAATGAAAAA-AT
* *
7716440 AAGTAAAAA-GAAAAAAG
1 AAGAAAAAATGAAAAAAT
7716457 AA-AAAAAA
1 AAGAAAAAA
7716465 AGGGTCAAGA
Statistics
Matches: 88, Mismatches: 5, Indels: 20
0.78 0.04 0.18
Matches are distributed among these distances:
16 6 0.07
17 32 0.36
18 10 0.11
19 15 0.17
20 9 0.10
21 7 0.08
23 2 0.02
24 7 0.08
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.08
Consensus pattern (18 bp):
AAGAAAAAATGAAAAAAT
Found at i:7716437 original size:8 final size:8
Alignment explanation
Indices: 7716347--7716428 Score: 78
Period size: 8 Copynumber: 9.9 Consensus size: 8
7716337 TATGCTTGAA
7716347 GAAAAAAT
1 GAAAAAAT
7716355 GAAAAAAT
1 GAAAAAAT
*
7716363 AAAAAAAAT
1 -GAAAAAAT
7716372 GAAAAAAT
1 GAAAAAAT
*
7716380 AAAAAAAAT
1 -GAAAAAAT
7716389 GAAGAAAA-
1 GAA-AAAAT
7716397 GAATAAAA-
1 GAA-AAAAT
7716405 GAAAAAAT
1 GAAAAAAT
*
7716413 GAAGAAAT
1 GAAAAAAT
7716421 GAAGAAAA
1 GAA-AAAA
7716429 AATGAAAAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
7 4 0.06
8 37 0.60
9 21 0.34
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (8 bp):
GAAAAAAT
Found at i:7716451 original size:33 final size:31
Alignment explanation
Indices: 7716365--7716462 Score: 100
Period size: 32 Copynumber: 3.2 Consensus size: 31
7716355 GAAAAAATAA
7716365 AAAAAATG-AAA-AAATAAAAA-AAATGAAG
1 AAAAAATGAAAAGAAATAAAAAGAAATGAAG
7716393 AAAAGAAT-AAAAGAAA-AAATGAAGAAATGAAG
1 AAAA-AATGAAAAGAAATAAA--AAGAAATGAAG
*
7716425 AAAAAATGAAAAAGAAAGTAAAAAGAAA-AAAG
1 AAAAAATG-AAAAGAAA-TAAAAAGAAATGAAG
7716457 AAAAAA
1 AAAAAA
7716463 AAAGGGTCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
28 4 0.07
29 9 0.15
30 3 0.05
31 5 0.08
32 21 0.36
33 14 0.24
35 3 0.05
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (31 bp):
AAAAAATGAAAAGAAATAAAAAGAAATGAAG
Found at i:7716455 original size:8 final size:8
Alignment explanation
Indices: 7716345--7716463 Score: 75
Period size: 8 Copynumber: 14.2 Consensus size: 8
7716335 ATTATGCTTG
7716345 AAGAAAAA
1 AAGAAAAA
*
7716353 ATGAAAAA
1 AAGAAAAA
7716361 ATA-AAAAA
1 A-AGAAAAA
7716369 AATGAAAAA
1 AA-GAAAAA
7716378 ATA-AAAAA
1 A-AGAAAAA
*
7716386 AATGAAGAA
1 AA-GAAAAA
*
7716395 AAGAATAA
1 AAGAAAAA
7716403 AAGAAAAA
1 AAGAAAAA
*
7716411 ATGAAGAAA
1 AAGAA-AAA
7716420 TGAAGAAAAA
1 --AAGAAAAA
*
7716430 ATGAAAAA
1 AAGAAAAA
*
7716438 GAA-AGTAAA
1 -AAGA-AAAA
7716447 AAG-AAAA
1 AAGAAAAA
7716454 AAGAAAAA
1 AAGAAAAA
7716462 AA
1 AA
7716464 AAGGGTCAAG
Statistics
Matches: 87, Mismatches: 11, Indels: 26
0.70 0.09 0.21
Matches are distributed among these distances:
7 8 0.09
8 52 0.60
9 19 0.22
10 4 0.05
11 4 0.05
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.08
Consensus pattern (8 bp):
AAGAAAAA
Found at i:7718184 original size:112 final size:112
Alignment explanation
Indices: 7718018--7718639 Score: 998
Period size: 112 Copynumber: 5.6 Consensus size: 112
7718008 TCAACATTTT
7718018 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
*
7718083 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGT
66 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGC
7718130 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
*
7718195 TTGTTCAACTTTTTTGCTTAAATTCATCCATCGGTGGATCAGCAGTGC
66 TTGTTCAAC-TTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGC
7718243 CAGTTAGAGTTCATAATGAGAAGAACTCATCT---GAAGAAGAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
7718305 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGC
66 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGC
* *
7718352 CAGTTAGAGTTCATAATGAGAAGAATTCATCTGAAGAAGAATAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* *
7718417 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTAGATCAGCAGTGC
66 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGC
* * * *
7718464 CAGTTAGAGTTCATAATGAAAATAACTCATCTGAAGAATAAGAAAAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* * * * * * ** *
7718529 CTGTTCAACCTTTTGCTTAAATTCATCACTTGATGGATCAACTTTTC
66 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGC
* ** *
7718576 TAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAGAAGTTCATAATGAGAAGA
7718640 GATTATTCAA
Statistics
Matches: 475, Mismatches: 30, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
109 68 0.14
110 39 0.08
112 277 0.58
113 91 0.19
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (112 bp):
CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGC
Found at i:7718400 original size:222 final size:221
Alignment explanation
Indices: 7718018--7718639 Score: 976
Period size: 222 Copynumber: 2.8 Consensus size: 221
7718008 TCAACATTTT
7718018 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCT---GAAGAAGAAGAAGTTCATAATGAGAAGAAC
*
7718083 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGTCAGTTAGAGTTCATAATG
63 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGCCAGTTAGAGTTCATAATG
7718148 AGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTTGCT
128 AGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAC-TTTTTGCT
*
7718213 TAAATTCATC-CATCGGTGGATCAGCAGTGC
192 TAAATTCATCAC-TCGGTAGATCAGCAGTGC
7718243 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTTG
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTTG
7718308 TTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGCCAGTTAGAGTTCATAATGAGA
66 TTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGCCAGTTAGAGTTCATAATGAGA
* *
7718373 AGAATTCATCTGAAGAAGAATAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAA
131 AGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAA
7718438 TTCATCACTCGGTAGATCAGCAGTGC
196 TTCATCACTCGGTAGATCAGCAGTGC
* * *
7718464 CAGTTAGAGTTCATAATGAAAATAACTCATCTGAAGAATAAGAAAAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAG---AAGAAGAAGTTCATAATGAGAAGAAC
* * * * * * ** * * ** *
7718529 CTGTTCAACCTTTTGCTTAAATTCATCACTTGATGGATCAACTTTTCTAGAAAAAGTTCATAATG
63 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGCCAGTTAGAGTTCATAATG
7718594 AGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
128 AGAAGAACTCATCTGAAGAA-GAAGAAGAAGTTCATAATGAGAAGA
7718640 GATTATTCAA
Statistics
Matches: 370, Mismatches: 22, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
221 69 0.19
222 149 0.40
224 96 0.26
225 56 0.15
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (221 bp):
CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTTG
TTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGCCAGTTAGAGTTCATAATGAGA
AGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAA
TTCATCACTCGGTAGATCAGCAGTGC
Found at i:7718621 original size:334 final size:336
Alignment explanation
Indices: 7718018--7718639 Score: 1000
Period size: 334 Copynumber: 1.9 Consensus size: 336
7718008 TCAACATTTT
7718018 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* * *
7718083 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGTCAGTTAGAGTTCATAATG
66 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTAGATCAGCAGTGCCAGTTAGAGTTCATAATG
* * * *
7718148 AGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTTGCT
131 AAAAGAACTCATCTGAAGAAGAAGAAAAAGTTCATAATGAGAAGAACCTGTTCAACTCTTTTGCT
* * ** *
7718213 TAAATTCATCCATCGGTGGATCAGCAGTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAA
196 TAAATTCATCCATCGATGGATCAACAGTGCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAA
7718278 G-A-AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGG
261 GAAGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGG
7718341 ATCAGCAGTGC
326 ATCAGCAGTGC
* *
7718352 CAGTTAGAGTTCATAATGAGAAGAATTCATCTGAAGAAGAATAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
7718417 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTAGATCAGCAGTGCCAGTTAGAGTTCATAATG
66 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTAGATCAGCAGTGCCAGTTAGAGTTCATAATG
* *
7718482 AAAATAACTCATCTGAAGAATAAGAAAAAGTTCATAATGAGAAGAACCTGTTCAAC-CTTTTGCT
131 AAAAGAACTCATCTGAAGAAGAAGAAAAAGTTCATAATGAGAAGAACCTGTTCAACTCTTTTGCT
* ** * *
7718546 TAAATTCAT-CACTTGATGGATCAACTTTTCTAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
196 TAAATTCATCCA-TCGATGGATCAACAGTGCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
7718610 AGAAGGAAGAAGAAGTTCATAATGAGAAGA
260 AGAA-G-AGAAGAAGTTCATAATGAGAAGA
7718640 GATTATTCAA
Statistics
Matches: 262, Mismatches: 21, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
332 2 0.01
333 60 0.23
334 177 0.68
337 23 0.09
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (336 bp):
CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTAGATCAGCAGTGCCAGTTAGAGTTCATAATG
AAAAGAACTCATCTGAAGAAGAAGAAAAAGTTCATAATGAGAAGAACCTGTTCAACTCTTTTGCT
TAAATTCATCCATCGATGGATCAACAGTGCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAA
GAAGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGG
ATCAGCAGTGC
Found at i:7718881 original size:3 final size:3
Alignment explanation
Indices: 7718875--7718951 Score: 95
Period size: 3 Copynumber: 25.7 Consensus size: 3
7718865 TTCATTTGAA
* * *
7718875 TAT TAT T-T ATAT TAT TAT TAT TAT TAT AAT AAT AAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7718920 TAT TAT TA- TAT ATAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TA
7718952 AAAAATAATT
Statistics
Matches: 68, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
2 3 0.04
3 61 0.90
4 4 0.06
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:7718922 original size:27 final size:27
Alignment explanation
Indices: 7718884--7718962 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 27
7718874 ATATTATTTA
7718884 TATTATTATTATTATTATAATAATAAT
1 TATTATTATTATTATTATAATAATAAT
7718911 TATTATTATTATTATTAT-AT-AT-AT
1 TATTATTATTATTATTATAATAATAAT
*
7718935 TATTATTATTATTATTA-AAAAATAAT
1 TATTATTATTATTATTATAATAATAAT
7718961 TA
1 TA
7718963 CAAGCCCAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
24 20 0.42
25 4 0.08
26 6 0.12
27 18 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TATTATTATTATTATTATAATAATAAT
Found at i:7718948 original size:21 final size:22
Alignment explanation
Indices: 7718875--7718949 Score: 109
Period size: 21 Copynumber: 3.4 Consensus size: 22
7718865 TTCATTTGAA
7718875 TATTATT-TATATTATTATTAT
1 TATTATTATATATTATTATTAT
*
7718896 TATTATAATAATAATTATTATTAT
1 TATTATTAT-AT-ATTATTATTAT
7718920 TATTATTATATA-TATTATTAT
1 TATTATTATATATTATTATTAT
7718941 TATTATTAT
1 TATTATTAT
7718950 TAAAAAATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
21 24 0.49
22 2 0.04
23 4 0.08
24 19 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TATTATTATATATTATTATTAT
Found at i:7720245 original size:13 final size:13
Alignment explanation
Indices: 7720227--7720265 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7720217 TTTCAATTTT
*
7720227 TATTTATTTTATA
1 TATTTATTTTAAA
7720240 TATTTATTTTAAA
1 TATTTATTTTAAA
*
7720253 TATATAGTTTTAA
1 TATTTA-TTTTAA
7720266 TTTTGTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (13 bp):
TATTTATTTTAAA
Found at i:7728115 original size:27 final size:27
Alignment explanation
Indices: 7728068--7728131 Score: 62
Period size: 27 Copynumber: 2.4 Consensus size: 27
7728058 TAATTATTAT
* *
7728068 TAAAATAA-GAATATTATATT-ATCTTAA
1 TAAAATAATAAATATGATATTAAT-TT-A
*
7728095 TAAAATAATAAATATGA-ATTAATTTT
1 TAAAATAATAAATATGATATTAATTTA
7728121 TAAAATAATAA
1 TAAAATAATAA
7728132 TATTATTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 11 0.34
27 13 0.41
28 8 0.25
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (27 bp):
TAAAATAATAAATATGATATTAATTTA
Found at i:7728182 original size:35 final size:35
Alignment explanation
Indices: 7728143--7728280 Score: 84
Period size: 37 Copynumber: 3.8 Consensus size: 35
7728133 ATTATTATAA
7728143 TATTAAAATAAAATAATATATTATATTTTAAAATT
1 TATTAAAATAAAATAATATATTATATTTTAAAATT
* * * * * *
7728178 TATTAATAA-AAAATATTTTTAAATATTTTTTGAAATAA
1 TATTAA-AATAAAATA-ATAT-ATTATATTTTAAAAT-T
* * * *
7728216 TACTAAAATAATAATAATA-ATAATAATTTTTATA-T
1 TATTAAAATAA-AATAATATATTAT-ATTTTAAAATT
7728251 TATTAAAATAAAAATATAATATATTATATT
1 TATTAAAAT--AAA-ATAATATATTATATT
7728281 ATTTTAATAT
Statistics
Matches: 75, Mismatches: 17, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
35 20 0.27
36 8 0.11
37 31 0.41
38 12 0.16
39 4 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.45
Consensus pattern (35 bp):
TATTAAAATAAAATAATATATTATATTTTAAAATT
Found at i:7728277 original size:29 final size:29
Alignment explanation
Indices: 7728228--7728283 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
7728218 CTAAAATAAT
* *
7728228 AATAATAATAATAATTTTTATATTATTAA
1 AATAAAAATAATAATTATTATATTATTAA
7728257 AATAAAAAT-ATAATATATTATATTATT
1 AATAAAAATAATAAT-TATTATATTATT
7728284 TTAATATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
AATAAAAATAATAATTATTATATTATTAA
Found at i:7728289 original size:29 final size:29
Alignment explanation
Indices: 7728226--7728289 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
7728216 TACTAAAATA
* *
7728226 ATAATAATAATAATAATTTTTATATTATT
1 ATAATAAAAATAATAATTATTATATTATT
*
7728255 AAAATAAAAAT-ATAATATATTATATTATT
1 ATAATAAAAATAATAAT-TATTATATTATT
*
7728284 TTAATA
1 ATAATA
7728290 TATTATTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
ATAATAAAAATAATAATTATTATATTATT
Found at i:7728293 original size:10 final size:10
Alignment explanation
Indices: 7728265--7728318 Score: 53
Period size: 9 Copynumber: 5.8 Consensus size: 10
7728255 AAAATAAAAA
7728265 TATAATATAT
1 TATAATATAT
7728275 TAT-AT-TAT
1 TATAATATAT
*
7728283 TTTAATATAT
1 TATAATATAT
*
7728293 TATTATA-AT
1 TATAATATAT
*
7728302 TATAA-AAAT
1 TATAATATAT
7728311 TATAATAT
1 TATAATAT
7728319 TATATCATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
8 6 0.17
9 17 0.49
10 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TATAATATAT
Found at i:7728323 original size:31 final size:31
Alignment explanation
Indices: 7728287--7728355 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
7728277 TATTATTTTA
* *
7728287 ATATATTATTATAA-TTATAAAAATTATAAT
1 ATATATTATTAAAATTTATAAAAAATATAAT
* * *
7728317 ATTATATCATTAAAATTTTTAAAAAATATATT
1 A-TATATTATTAAAATTTATAAAAAATATAAT
7728349 ATATATT
1 ATATATT
7728356 TTTTAATAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
30 1 0.03
31 16 0.52
32 14 0.45
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (31 bp):
ATATATTATTAAAATTTATAAAAAATATAAT
Found at i:7728402 original size:71 final size:72
Alignment explanation
Indices: 7728268--7728403 Score: 172
Period size: 71 Copynumber: 1.9 Consensus size: 72
7728258 ATAAAAATAT
*
7728268 AATATATTATATTATTTTAATATATTATTATAATTATAAAAATTATAATATTATATCATTAAAAT
1 AATATATTATATTATTTTAATATATTATTAT-ATTATAAAAATTATAATATTAAATCATTAAAAT
7728333 TTTTAAAA
65 TTTTAAAA
* * *
7728341 AATATATTATATATTTTTTAATA-ATTAATT-T-TTATTAAAATTTTAATATTAAAT-ACTTAAA
1 AATATATTATAT-TATTTTAATATATT-ATTATATTATAAAAATTATAATATTAAATCA-TTAAA
7728402 AT
63 AT
7728404 AATATTATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
70 1 0.02
71 27 0.48
73 16 0.29
74 12 0.21
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (72 bp):
AATATATTATATTATTTTAATATATTATTATATTATAAAAATTATAATATTAAATCATTAAAATT
TTTAAAA
Found at i:7728999 original size:22 final size:22
Alignment explanation
Indices: 7728974--7729018 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
7728964 AAGAGATTAT
*
7728974 TAAGAGAAACACTTGAAGGGAA
1 TAAGAGAAACACTGGAAGGGAA
7728996 TAAGAGAAACACTGGAAGGGAA
1 TAAGAGAAACACTGGAAGGGAA
7729018 T
1 T
7729019 GCTCGAACGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.09, G:0.29, T:0.13
Consensus pattern (22 bp):
TAAGAGAAACACTGGAAGGGAA
Found at i:7733285 original size:18 final size:18
Alignment explanation
Indices: 7733223--7733288 Score: 51
Period size: 18 Copynumber: 3.4 Consensus size: 18
7733213 GTGTCAATCT
*
7733223 ATTTAATACACAATTACA
1 ATTTAATATACAATTACA
** *
7733241 ATTTAAATAATAAAACAAACACT
1 ATTT-AAT-AT---ACAATTACA
7733264 ATTTAATATACAATTACA
1 ATTTAATATACAATTACA
7733282 ATTTAAT
1 ATTTAAT
7733289 TGAATGAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
18 17 0.47
19 3 0.08
20 1 0.03
21 2 0.06
22 3 0.08
23 10 0.28
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (18 bp):
ATTTAATATACAATTACA
Found at i:7738045 original size:53 final size:53
Alignment explanation
Indices: 7737987--7738091 Score: 165
Period size: 53 Copynumber: 2.0 Consensus size: 53
7737977 CTGTACTTTC
* * *
7737987 GGCACTATGTATGCATCCATGATATTCATAATGAGTTTGTGAATTACCATTTG
1 GGCACTATGTATGCACCCATGATATTAATAATGAGGTTGTGAATTACCATTTG
* *
7738040 GGCACTATGTGTGCACCCATGGTATTAATAATGAGGTTGTGAATTACCATTT
1 GGCACTATGTATGCACCCATGATATTAATAATGAGGTTGTGAATTACCATTT
7738092 CGTTACATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (53 bp):
GGCACTATGTATGCACCCATGATATTAATAATGAGGTTGTGAATTACCATTTG
Done.