Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 89
Found at i:8059329 original size:17 final size:18
Alignment explanation
Indices: 8059292--8059333 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
8059282 TTTTTCTTTA
*
8059292 AAATAAAAGATAATAATT
1 AAATAAAAGATAATAAAT
8059310 AAATAAAAGA-AATAAAT
1 AAATAAAAGATAATAAAT
8059327 AAATAAA
1 AAATAAA
8059334 TAAAAGAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAAGATAATAAAT
Found at i:8059333 original size:21 final size:19
Alignment explanation
Indices: 8059292--8059340 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
8059282 TTTTTCTTTA
*
8059292 AAATAAAAG-ATAATAATT
1 AAATAAAAGAATAATAAAT
8059310 AAATAAAAGAAATAAATAAAT
1 AAATAAAAG-AAT-AATAAAT
8059331 AAATAAAAGA
1 AAATAAAAGA
8059341 GATAGAGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 9 0.33
20 3 0.11
21 15 0.56
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.20
Consensus pattern (19 bp):
AAATAAAAGAATAATAAAT
Found at i:8059994 original size:64 final size:68
Alignment explanation
Indices: 8059920--8060095 Score: 202
Period size: 69 Copynumber: 2.6 Consensus size: 68
8059910 TAAAACATCT
* *
8059920 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT--AA-AAA-AT-AATATAAT
1 TAAATCCTAATTAAAATAC-TAAAACTATTTAAACTAAAATACCTAAAACAAATATAAAAATAAT
8059980 ATTC-
65 A-TCG
** *
8059984 TAAATCCTAATTAAAATACTAAAACCTATTTAATTTAAAATATCTAAAACAAATATAAAAATAAT
1 TAAATCCTAATTAAAATACTAAAA-CTATTTAAACTAAAATACCTAAAACAAATATAAAAATAAT
8060049 ATCG
65 ATCG
* * *
8060053 TAAAACTTAATTAAAATACTAAAACTTATTTAAACTGAAATAC
1 TAAATCCTAATTAAAATACTAAAAC-TATTTAAACTAAAATAC
8060096 AAAGATAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
63 5 0.05
64 35 0.38
66 2 0.02
67 3 0.03
68 5 0.05
69 43 0.46
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.32
Consensus pattern (68 bp):
TAAATCCTAATTAAAATACTAAAACTATTTAAACTAAAATACCTAAAACAAATATAAAAATAATA
TCG
Found at i:8060011 original size:19 final size:19
Alignment explanation
Indices: 8059955--8060016 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
8059945 CTATTTAAAC
**
8059955 TAAAATACCTAAAAAATAAT
1 TAAAATA-CTAAAACCTAAT
* * *
8059975 ATAATATTCTAAATCCTAAT
1 -TAAAATACTAAAACCTAAT
*
8059995 TAAAATACTAAAACCTATT
1 TAAAATACTAAAACCTAAT
8060014 TAA
1 TAA
8060017 TTTAAAATAT
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
19 18 0.56
20 9 0.28
21 5 0.16
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATACTAAAACCTAAT
Found at i:8060094 original size:69 final size:63
Alignment explanation
Indices: 8059920--8060095 Score: 183
Period size: 64 Copynumber: 2.7 Consensus size: 63
8059910 TAAAACATCT
* * *
8059920 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATACCTAAAAAATAATATAATATTC
1 TAAAACCTAATTAAAATAC-TAAAACTATTTAAACTAAAATACCTAAAAAATAAAATAATATTC
* ** *
8059984 TAAATCCTAATTAAAATACTAAAACCTATTTAATTTAAAATATCTAAAACAAATATAAA-AATAA
1 TAAAACCTAATTAAAATACTAAAA-CTATTTAAACTAAAATACCT-AAA-AAATA-AAATAAT-A
8060048 TATC
61 T-TC
* *
8060052 GTAAAACTTAATTAAAATACTAAAACTTATTTAAACTGAAATAC
1 -TAAAACCTAATTAAAATACTAAAAC-TATTTAAACTAAAATAC
8060096 AAAGATAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
63 5 0.05
64 35 0.38
65 3 0.03
66 8 0.09
67 4 0.04
68 3 0.03
69 35 0.38
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.32
Consensus pattern (63 bp):
TAAAACCTAATTAAAATACTAAAACTATTTAAACTAAAATACCTAAAAAATAAAATAATATTC
Found at i:8062104 original size:24 final size:24
Alignment explanation
Indices: 8062054--8062105 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8062044 TTGAGAATGT
* *
8062054 TAATAATATTGATATTGATAGTTC
1 TAATAATATTGATATTGATAATAC
* *
8062078 TAATAATGTTGATGTTGATAATAC
1 TAATAATATTGATATTGATAATAC
8062102 TAAT
1 TAAT
8062106 GCTTTTGATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (24 bp):
TAATAATATTGATATTGATAATAC
Found at i:8066848 original size:3 final size:3
Alignment explanation
Indices: 8066840--8066911 Score: 126
Period size: 3 Copynumber: 23.3 Consensus size: 3
8066830 TTGCCTTTAC
8066840 AAG AAG AAG AAAG AAG AAG AAG AAG AAG AAAG AAG AAG AAG AAG AAG
1 AAG AAG AAG -AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG
8066887 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
8066912 GATTAGATCA
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
3 61 0.91
4 6 0.09
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8067015 original size:3 final size:3
Alignment explanation
Indices: 8067007--8067133 Score: 159
Period size: 3 Copynumber: 41.7 Consensus size: 3
8066997 AATGTCTGGC
8067007 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* * *
8067055 GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GATTA GAT CATA -AA CATA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA--A GAA GA-A GAA GA-A
* *
8067102 GAA GAA GAA GAA GAA AAA GAA GAA GAA AAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
8067134 GATTAGATCA
Statistics
Matches: 110, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
2 3 0.03
3 102 0.93
4 2 0.02
5 3 0.03
ACGTcount: A:0.65, C:0.02, G:0.29, T:0.04
Consensus pattern (3 bp):
GAA
Found at i:8067237 original size:3 final size:3
Alignment explanation
Indices: 8067229--8067272 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8067219 AATGTCTGGC
8067229 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
8067273 GATTAGATCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8067345 original size:139 final size:139
Alignment explanation
Indices: 8067101--8067367 Score: 507
Period size: 139 Copynumber: 1.9 Consensus size: 139
8067091 TCATAAACAT
8067101 AGAAGAAGAAGAAGAAAAAGAAGAAGAAAAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
1 AGAAGAAGAAGAAGAAAAAGAAGAAGAAAAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
*
8067166 TCCGCCATGATTATGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCGA
66 TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCGA
8067231 AGAAGAAGA
131 AGAAGAAGA
* *
8067240 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
1 AGAAGAAGAAGAAGAAAAAGAAGAAGAAAAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
8067305 TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGC
66 TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGC
8067368 CCAAGATTAT
Statistics
Matches: 125, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
139 125 1.00
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (139 bp):
AGAAGAAGAAGAAGAAAAAGAAGAAGAAAAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCGA
AGAAGAAGA
Found at i:8067788 original size:2 final size:2
Alignment explanation
Indices: 8067783--8067807 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8067773 AATGGATTGC
8067783 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8067808 TGTATATGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8068706 original size:3 final size:3
Alignment explanation
Indices: 8068698--8068731 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8068688 TTGCCTTTAC
8068698 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
8068732 GATTAGATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8074547 original size:24 final size:24
Alignment explanation
Indices: 8074520--8074582 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
8074510 TCTGATTTGA
* *
8074520 ATTCTGTTATGATACCTGACCTGG
1 ATTCTGATATGATACATGACCTGG
* *
8074544 ATTCTAATCTGATACATGACCTGG
1 ATTCTGATATGATACATGACCTGG
8074568 ATTCTGATATGATAC
1 ATTCTGATATGATAC
8074583 TTGATCTGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (24 bp):
ATTCTGATATGATACATGACCTGG
Found at i:8081237 original size:14 final size:14
Alignment explanation
Indices: 8081218--8081244 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8081208 TCAAAATTCG
8081218 ACTCGACTCGAAAA
1 ACTCGACTCGAAAA
8081232 ACTCGACTCGAAA
1 ACTCGACTCGAAA
8081245 TGACTTCGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.30, G:0.15, T:0.15
Consensus pattern (14 bp):
ACTCGACTCGAAAA
Found at i:8082120 original size:51 final size:51
Alignment explanation
Indices: 8082044--8082173 Score: 206
Period size: 51 Copynumber: 2.5 Consensus size: 51
8082034 TTTGATTGTG
8082044 TGTTCGATTCATGTCGAATTCAAAATCTTAACTCCAGAACAGAAGGTTGCC
1 TGTTCGATTCATGTCGAATTCAAAATCTTAACTCCAGAACAGAAGGTTGCC
* * * *
8082095 TGTTCTATTCAAGTCGAATTCAAAATCATAACTCCAGAACAGAAGGTTGCG
1 TGTTCGATTCATGTCGAATTCAAAATCTTAACTCCAGAACAGAAGGTTGCC
* *
8082146 TGTTCGATTCATGTAGAGTTCAAAATCT
1 TGTTCGATTCATGTCGAATTCAAAATCT
8082174 CGAAATTAGG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (51 bp):
TGTTCGATTCATGTCGAATTCAAAATCTTAACTCCAGAACAGAAGGTTGCC
Found at i:8083262 original size:15 final size:15
Alignment explanation
Indices: 8083244--8083275 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8083234 ACAAGATTCC
8083244 ACATGTTTGGATTAT
1 ACATGTTTGGATTAT
8083259 ACATGTTTGGATTAT
1 ACATGTTTGGATTAT
8083274 AC
1 AC
8083276 GTTTCTATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (15 bp):
ACATGTTTGGATTAT
Found at i:8083833 original size:25 final size:25
Alignment explanation
Indices: 8083805--8083861 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
8083795 TTTGTTTGTA
8083805 TGTTTGTGGTGCAGCAATTTCCTAG
1 TGTTTGTGGTGCAGCAATTTCCTAG
*
8083830 TGTTTGTGGTGCAGCAGTTTCCTAG
1 TGTTTGTGGTGCAGCAATTTCCTAG
8083855 TGTTTGT
1 TGTTTGT
8083862 TATGCTTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.12, C:0.14, G:0.30, T:0.44
Consensus pattern (25 bp):
TGTTTGTGGTGCAGCAATTTCCTAG
Found at i:8085286 original size:64 final size:63
Alignment explanation
Indices: 8085215--8085336 Score: 174
Period size: 64 Copynumber: 1.9 Consensus size: 63
8085205 TAAAACATCT
8085215 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAAATAAAATACCTAAAAAATAATATAATATTC
1 TAAATCCTAATTAAAACAC-TAAAACCTATTTAAAATAAAATACCTAAAAAA-AATATAATATTC
* ** * *
8085279 TAAATCCTAATTAAAATACTAAAACCTATTTAATTTAAAATACTTAAAACAAATATAA
1 TAAATCCTAATTAAAACACTAAAACCTATTTAAAATAAAATACCTAAAAAAAATATAA
8085337 AATATAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
63 12 0.23
64 40 0.77
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (63 bp):
TAAATCCTAATTAAAACACTAAAACCTATTTAAAATAAAATACCTAAAAAAAATATAATATTC
Found at i:8085306 original size:19 final size:19
Alignment explanation
Indices: 8085250--8085388 Score: 58
Period size: 19 Copynumber: 7.2 Consensus size: 19
8085240 CTATTTAAAA
**
8085250 TAAAATACCTAAAAAATAAT
1 TAAAATA-CTAAAACCTAAT
* * *
8085270 ATAATATTCTAAATCCTAAT
1 -TAAAATACTAAAACCTAAT
8085290 TAAAATACTAAAACCTATTTAATT
1 TAAAATACTAAAACC----TAA-T
*
8085314 TAAAATACTTAAAA-CAAAT
1 TAAAATAC-TAAAACCTAAT
8085333 ATAAAATA-T-AAA---AA-
1 -TAAAATACTAAAACCTAAT
* * *
8085347 TAATATCCTAAAACTTAAT
1 TAAAATACTAAAACCTAAT
*
8085366 TAAAATACTAAAACCTATT
1 TAAAATACTAAAACCTAAT
8085385 TAAA
1 TAAA
8085389 CTAAAATACA
Statistics
Matches: 90, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
13 5 0.06
14 1 0.01
15 5 0.06
17 3 0.03
18 3 0.03
19 32 0.36
20 18 0.20
21 5 0.06
23 3 0.03
24 10 0.11
25 5 0.06
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATACTAAAACCTAAT
Found at i:8085409 original size:76 final size:75
Alignment explanation
Indices: 8085270--8085412 Score: 198
Period size: 76 Copynumber: 1.9 Consensus size: 75
8085260 AAAAAATAAT
* * ** *
8085270 ATAATATTCTAAATCCTAATTAAAATACTAAAACCTATTTAATTTAAAATACTTAAAACAAATAT
1 ATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAAAATAC-TAAAAAAAATAT
8085335 AAAATATAAAA
65 AAAATATAAAA
*
8085346 ATAATATCCTAAAACTTAATTAAAATACTAAAACCTATTTAAACTAAAATAC-AAAGATAAAATA
1 ATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAAAATACTAAA-A-AAAATA
8085410 TAA
64 TAA
8085413 TGTTTAAAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
74 3 0.05
75 1 0.02
76 55 0.93
ACGTcount: A:0.57, C:0.11, G:0.01, T:0.31
Consensus pattern (75 bp):
ATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAAAATACTAAAAAAAATATA
AAATATAAAA
Found at i:8086998 original size:16 final size:16
Alignment explanation
Indices: 8086977--8087008 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8086967 GAACCAAATC
8086977 TGTTTTTTTCTGCACT
1 TGTTTTTTTCTGCACT
8086993 TGTTTTTTTCTGCACT
1 TGTTTTTTTCTGCACT
8087009 GCATTGTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.12, T:0.62
Consensus pattern (16 bp):
TGTTTTTTTCTGCACT
Found at i:8092642 original size:17 final size:18
Alignment explanation
Indices: 8092605--8092645 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
8092595 TTTTTCTTTA
*
8092605 AAATAAAAGATAATAATT
1 AAATAAAAGATAATAAAT
8092623 AAATAAAAGA-AATAAAT
1 AAATAAAAGATAATAAAT
8092640 AAATAA
1 AAATAA
8092646 TAAAAGAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (18 bp):
AAATAAAAGATAATAAAT
Found at i:8093306 original size:64 final size:63
Alignment explanation
Indices: 8093232--8093353 Score: 174
Period size: 64 Copynumber: 1.9 Consensus size: 63
8093222 TAAAACATCT
8093232 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAACTAAAATACCTAAAAAATAATATAATATTC
1 TAAATCCTAATTAAAACAC-TAAAACCTATTTAAACTAAAATACCTAAAAAA-AATATAATATTC
* ** * *
8093296 TAAATCCTAATTAAAATACTAAAACCTATTTAATTTAAAATATCTAAAACAAATATAA
1 TAAATCCTAATTAAAACACTAAAACCTATTTAAACTAAAATACCTAAAAAAAATATAA
8093354 AATATAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
63 12 0.23
64 40 0.77
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (63 bp):
TAAATCCTAATTAAAACACTAAAACCTATTTAAACTAAAATACCTAAAAAAAATATAATATTC
Found at i:8093323 original size:19 final size:19
Alignment explanation
Indices: 8093267--8093328 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
8093257 CTATTTAAAC
**
8093267 TAAAATACCTAAAAAATAAT
1 TAAAATA-CTAAAACCTAAT
* * *
8093287 ATAATATTCTAAATCCTAAT
1 -TAAAATACTAAAACCTAAT
*
8093307 TAAAATACTAAAACCTATT
1 TAAAATACTAAAACCTAAT
8093326 TAA
1 TAA
8093329 TTTAAAATAT
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
19 18 0.56
20 9 0.28
21 5 0.16
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATACTAAAACCTAAT
Found at i:8093370 original size:31 final size:33
Alignment explanation
Indices: 8093334--8093395 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
8093324 TTTAATTTAA
8093334 AATATC-TAAAAC-AAATATAAAATA-TAAAAAT
1 AATATCGTAAAACTAAAT-TAAAATACTAAAAAT
*
8093365 AATATCGTAAAACTTAATTAAAATACTAAAA
1 AATATCGTAAAACTAAATTAAAATACTAAAA
8093396 CTTATTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 6 0.22
32 13 0.48
33 8 0.30
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (33 bp):
AATATCGTAAAACTAAATTAAAATACTAAAAAT
Found at i:8095419 original size:24 final size:24
Alignment explanation
Indices: 8095369--8095420 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8095359 TTGAGAATGT
* *
8095369 TAATAATATTGATATTGATAGTTC
1 TAATAATATTGATATTGATAATAC
* *
8095393 TAATAATGTTGATGTTGATAATAC
1 TAATAATATTGATATTGATAATAC
8095417 TAAT
1 TAAT
8095421 GCTTTTGATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (24 bp):
TAATAATATTGATATTGATAATAC
Found at i:8100163 original size:3 final size:3
Alignment explanation
Indices: 8100155--8100228 Score: 139
Period size: 3 Copynumber: 24.3 Consensus size: 3
8100145 TTGCCTTTAC
8100155 AAG AAG AAG AAAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
8100201 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
8100229 TTAGATCATA
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 67 0.96
4 3 0.04
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8100329 original size:3 final size:3
Alignment explanation
Indices: 8100321--8100429 Score: 132
Period size: 3 Copynumber: 35.7 Consensus size: 3
8100311 AATGTCTGGC
8100321 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* * *
8100369 GAA GAA GAA G-A GATTA GAT CATA -AA CATA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GA--A GAA GA-A GAA GA-A GAA GAA GAA GAA GAA GAA
*
8100416 GAA GAA GAA AAA GA
1 GAA GAA GAA GAA GA
8100430 GATTAGATCA
Statistics
Matches: 94, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
2 3 0.03
3 86 0.91
4 2 0.02
5 3 0.03
ACGTcount: A:0.64, C:0.02, G:0.29, T:0.05
Consensus pattern (3 bp):
GAA
Found at i:8100410 original size:50 final size:50
Alignment explanation
Indices: 8100347--8100447 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
8100337 AAGAAGAAGA
*
8100347 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAGATCATAAACAT
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAGATTAGATCATAAACAT
8100397 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAGATTAGATCATAAACAT
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAGATTAGATCATAAACAT
8100447 A
1 A
8100448 TAGGGTTGTA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.61, C:0.04, G:0.25, T:0.10
Consensus pattern (50 bp):
AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAGATTAGATCATAAACAT
Found at i:8100504 original size:204 final size:201
Alignment explanation
Indices: 8100193--8100598 Score: 751
Period size: 204 Copynumber: 2.0 Consensus size: 201
8100183 AAGAAGAAGA
*
8100193 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTAGATCATAACATATAGGGTTGTATGAT
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGATTAGATCATAACATATAGGGTTGTATGAT
8100258 TCCGCCATGATTACATCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCGA
66 TCCGCCATGATTACATCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGC--
8100323 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAGAT
129 -GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAGAT
8100388 CATAAACAT
193 CATAAACAT
8100397 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAG-AGATTAGATCATAAACATATAGGGTTGTATGA
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGATTAGATCAT-AACATATAGGGTTGTATGA
*
8100461 TTCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCG
65 TTCCGCCATGATTACATCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCG
8100526 AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAGATCA
130 AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAGATCA
8100591 TAAACAT
195 TAAACAT
8100598 A
1 A
8100599 TAGGGTTGTA
Statistics
Matches: 199, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
201 74 0.37
203 12 0.06
204 113 0.57
ACGTcount: A:0.49, C:0.10, G:0.24, T:0.17
Consensus pattern (201 bp):
AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGATTAGATCATAACATATAGGGTTGTATGAT
TCCGCCATGATTACATCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAGATCAT
AAACAT
Found at i:8100533 original size:3 final size:3
Alignment explanation
Indices: 8100525--8100580 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
8100515 AATGTCTGGC
8100525 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
8100573 GAA GAA GA
1 GAA GAA GA
8100581 GATTAGATCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8100665 original size:151 final size:151
Alignment explanation
Indices: 8100397--8100675 Score: 549
Period size: 151 Copynumber: 1.8 Consensus size: 151
8100387 TCATAAACAT
8100397 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
8100462 TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCGA
66 TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCGA
8100527 AGAAGAAGAAGAAGAAGAAGA
131 AGAAGAAGAAGAAGAAGAAGA
*
8100548 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
1 AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
8100613 TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGC
66 TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGC
8100676 CCAAGATTAT
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 127 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (151 bp):
AGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAGATTAGATCATAAACATATAGGGTTGTATGAT
TCCGCCATGATTACGTCGATGCAACAAGCACAAGTACTACTACTTTCGTTATCAATGTCTGGCGA
AGAAGAAGAAGAAGAAGAAGA
Found at i:8101093 original size:2 final size:2
Alignment explanation
Indices: 8101088--8101116 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8101078 AATGGATTGC
8101088 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8101117 TGTATATGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8102015 original size:3 final size:3
Alignment explanation
Indices: 8102007--8102040 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8101997 TTGCCTTTAC
8102007 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
8102041 GATTAGATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8107853 original size:24 final size:24
Alignment explanation
Indices: 8107826--8107888 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
8107816 TCTGATTTGA
* *
8107826 ATTCTGTTATGATACCTGACCTGG
1 ATTCTGATATGATACATGACCTGG
* *
8107850 ATTCTAATCTGATACATGACCTGG
1 ATTCTGATATGATACATGACCTGG
8107874 ATTCTGATATGATAC
1 ATTCTGATATGATAC
8107889 TTGATCTGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (24 bp):
ATTCTGATATGATACATGACCTGG
Found at i:8112316 original size:24 final size:24
Alignment explanation
Indices: 8112289--8112351 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
8112279 TCTGATTTGA
* * *
8112289 ATTCTGTTATGATACCTGACATGG
1 ATTCTGATATGATACATGACATAG
* * *
8112313 ATTCTAATCTGATACATGACCTAG
1 ATTCTGATATGATACATGACATAG
8112337 ATTCTGATATGATAC
1 ATTCTGATATGATAC
8112352 TTGATCTGAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (24 bp):
ATTCTGATATGATACATGACATAG
Found at i:8114541 original size:10 final size:10
Alignment explanation
Indices: 8114526--8114585 Score: 58
Period size: 10 Copynumber: 6.4 Consensus size: 10
8114516 CATTGTCCCA
8114526 TTGACCAGCG
1 TTGACCAGCG
8114536 TTGA-C--CG
1 TTGACCAGCG
*
8114543 TTGATCA-CG
1 TTGACCAGCG
8114552 TTGA-CATGCG
1 TTGACCA-GCG
*
8114562 TTGACCACCG
1 TTGACCAGCG
8114572 TTGACCAGCG
1 TTGACCAGCG
8114582 TTGA
1 TTGA
8114586 TCGGCTAGTG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
7 6 0.14
8 3 0.07
9 7 0.16
10 25 0.58
11 2 0.05
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (10 bp):
TTGACCAGCG
Found at i:8114701 original size:21 final size:21
Alignment explanation
Indices: 8114677--8114716 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8114667 TCCATATCTT
* * *
8114677 TATATTTATTTATTTTATACA
1 TATATATATATATTATATACA
8114698 TATATATATATATTATATA
1 TATATATATATATTATATA
8114717 GTTTGCAACC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
TATATATATATATTATATACA
Found at i:8114795 original size:36 final size:36
Alignment explanation
Indices: 8114743--8115072 Score: 236
Period size: 38 Copynumber: 8.6 Consensus size: 36
8114733 TGAAAATACG
8114743 TATATAATATATAGTTTTTAAAACATTTTTGAAAAC
1 TATATAATATATAGTTTTTAAAACATTTTTGAAAAC
* * *
8114779 TATATAATATACAGTTTTTAAAAAAACGTTTTAGAAAA-
1 TATATAATATATAGTTTTT---AAAACATTTTTGAAAAC
* *
8114817 TATAGATAATATATAATTTTTAAAATCATTTTTGAAATC
1 TAT--ATAATATATAGTTTTTAAAA-CATTTTTGAAAAC
* * *
8114856 TTATATAATATATAATTTTGAAAACATTTTTGAAAATT
1 -TATATAATATATAGTTTTTAAAACATTTTTGAAAA-C
*
8114894 TATATAATATATAGTTTTGAAAACA-TTTTGAAAAC
1 TATATAATATATAGTTTTTAAAACATTTTTGAAAAC
** * *
8114929 ATTTATATGTTATATGGTTTTTAAAAAAAAAACATTTTTGAAAATA
1 ---TATATAATATATAGTTTTT------AAAACATTTTTGAAAA-C
** * *
8114975 TATATAATATATAACTTTTAAAACA-TTTTAAAAAA
1 TATATAATATATAGTTTTTAAAACATTTTTGAAAAC
* * *
8115010 TACATATATTATATAGTTTTTTGAAACGTTTTTGAAAA-
1 T--ATATAATATATAG-TTTTTAAAACATTTTTGAAAAC
*
8115048 TACGTATAATATATAGTTTTAAAAA
1 TA--TATAATATATAGTTTTTAAAA
8115073 AAAATATTTT
Statistics
Matches: 235, Mismatches: 33, Indels: 51
0.74 0.10 0.16
Matches are distributed among these distances:
35 2 0.01
36 36 0.15
37 63 0.27
38 66 0.28
39 22 0.09
40 17 0.07
43 14 0.06
44 6 0.03
45 9 0.04
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.43
Consensus pattern (36 bp):
TATATAATATATAGTTTTTAAAACATTTTTGAAAAC
Found at i:8114897 original size:37 final size:37
Alignment explanation
Indices: 8114731--8115072 Score: 233
Period size: 37 Copynumber: 8.9 Consensus size: 37
8114721 GCAACCGATC
* *
8114731 TTTGAAAATACGTATATAATATATAGTTTTTAAAACATT
1 TTTGAAAATA--TATATAATATATAATTTTAAAAACATT
* * * *
8114770 TTTGAAAA-CTATATAATATACAGTTTTTAAAAAAACGTT
1 TTTGAAAATATATATAATATATA-ATTTT--AAAAACATT
* * *
8114809 TTAGAAAATATAGATAATATATAATTTTTAAAATCATT
1 TTTGAAAATATATATAATATATAA-TTTTAAAAACATT
* *
8114847 TTTG-AAATCTTATATAATATATAATTTTGAAAACATT
1 TTTGAAAAT-ATATATAATATATAATTTTAAAAACATT
* * *
8114884 TTTGAAAATTTATATAATATATAGTTTTGAAAACA-T
1 TTTGAAAATATATATAATATATAATTTTAAAAACATT
* ** **
8114920 TTTGAAAACATTTATATGTTATATGGTTTTTAAAAAAAAAACATT
1 TTTG-AAA-ATATATATAATATAT-AATTTT-----AAAAACATT
8114965 TTTGAAAATATATATAATATATAACTTTT-AAAACATT
1 TTTGAAAATATATATAATATATAA-TTTTAAAAACATT
** * * * ** *
8115002 TTAAAAAATACATATATTATATAGTTTTTTGAAACGTT
1 TTTGAAAATATATATAATATATA-ATTTTAAAAACATT
** *
8115040 TTTGAAAATACGTATAATATATAGTTTTAAAAA
1 TTTGAAAATATATATAATATATAATTTTAAAAA
8115073 AAAATATTTT
Statistics
Matches: 242, Mismatches: 42, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
36 17 0.07
37 89 0.37
38 65 0.27
39 26 0.11
40 15 0.06
43 16 0.07
44 9 0.04
45 5 0.02
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.43
Consensus pattern (37 bp):
TTTGAAAATATATATAATATATAATTTTAAAAACATT
Found at i:8114924 original size:11 final size:11
Alignment explanation
Indices: 8114908--8114932 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8114898 TAATATATAG
8114908 TTTTGAAAACA
1 TTTTGAAAACA
8114919 TTTTGAAAACA
1 TTTTGAAAACA
8114930 TTT
1 TTT
8114933 ATATGTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:8114979 original size:81 final size:80
Alignment explanation
Indices: 8114731--8115030 Score: 232
Period size: 75 Copynumber: 3.8 Consensus size: 80
8114721 GCAACCGATC
** ** * *
8114731 TTTGAAAATACGTATATAATATATAGTTTTTAAAACATTTT-TGAAA-ACTATATAATATACAGT
1 TTTGAAAATA--TATATAATATATAACTTTTAAAACATTTTAAAAAATAC-ATATATTATATAGT
*
8114794 TTTT---AAAAAAACGTT
63 TTTTAAAAAAAAAACATT
* * * ** * *
8114809 TTAGAAAATATAGATAATATATAATTTTTAAAATCATTTT-TGAAAT-CTTATATAATATATA-A
1 TTTGAAAATATATATAATATATAACTTTTAAAA-CATTTTAAAAAATAC--ATATATTATATAGT
*
8114871 TTTT-----GAAAACATT
63 TTTTAAAAAAAAAACATT
* * * ** * *
8114884 TTTGAAAATTTATATAATATAT-AGTTTTGAAAACATTTTGAAAACATTTATATGTTATATGGTT
1 TTTGAAAATATATATAATATATAACTTTT-AAAACATTTT-AAAAAATACATATATTATATAGTT
8114948 TTTAAAAAAAAAACATT
64 TTTAAAAAAAAAACATT
8114965 TTTGAAAATATATATAATATATAACTTTTAAAACATTTTAAAAAATACATATATTATATAGTTTT
1 TTTGAAAATATATATAATATATAACTTTTAAAACATTTTAAAAAATACATATATTATATAGTTTT
8115030 T
66 T
8115031 TGAAACGTTT
Statistics
Matches: 181, Mismatches: 27, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
74 11 0.06
75 39 0.22
76 28 0.15
77 16 0.09
78 21 0.12
80 22 0.12
81 39 0.22
82 5 0.03
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (80 bp):
TTTGAAAATATATATAATATATAACTTTTAAAACATTTTAAAAAATACATATATTATATAGTTTT
TAAAAAAAAAACATT
Found at i:8115085 original size:118 final size:117
Alignment explanation
Indices: 8114838--8115076 Score: 272
Period size: 118 Copynumber: 2.0 Consensus size: 117
8114828 TATAATTTTT
* * ** **
8114838 AAAATCATTTTTG-AAATCTTATATAATATATAATTTTGAAAACATTTTTGAAAATTTATATAAT
1 AAAAACATTTTTGAAAAT-ATATATAATATATAATTTTGAAAACATTTTAAAAAATACATATAAT
** * *
8114902 ATATAGTTTTGAAAACATTTTGAAAACATTTATATGTTATATGGTTTTTAAAAA
65 ATATAGTTTTGAAAACATTTTGAAAACACGTATA-GATATATAGTTTTTAAAAA
*
8114956 AAAAACATTTTTGAAAATATATATAATATATAACTTTT-AAAACATTTTAAAAAATACATATATT
1 AAAAACATTTTTGAAAATATATATAATATATAA-TTTTGAAAACATTTTAAAAAATACATATAAT
* *
8115020 ATATAGTTTTTTG-AAACGTTTTTGAAAATACGTATA-ATATATAG-TTTTAAAAA
65 ATATAG--TTTTGAAAAC-ATTTTGAAAACACGTATAGATATATAGTTTTTAAAAA
8115073 AAAA
1 AAAA
8115077 TATTTTTTTA
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
117 13 0.13
118 59 0.57
119 12 0.12
120 19 0.18
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (117 bp):
AAAAACATTTTTGAAAATATATATAATATATAATTTTGAAAACATTTTAAAAAATACATATAATA
TATAGTTTTGAAAACATTTTGAAAACACGTATAGATATATAGTTTTTAAAAA
Found at i:8118736 original size:17 final size:17
Alignment explanation
Indices: 8118716--8118748 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8118706 CTCACTAACC
*
8118716 CTTTTATTTTTTGTTCT
1 CTTTTATTTTGTGTTCT
8118733 CTTTTATTTTGTGTTC
1 CTTTTATTTTGTGTTC
8118749 ATCGTTTGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.12, G:0.09, T:0.73
Consensus pattern (17 bp):
CTTTTATTTTGTGTTCT
Found at i:8119386 original size:19 final size:19
Alignment explanation
Indices: 8119362--8119407 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
8119352 CATCATGCAT
8119362 TTTGCATTTCGTTATTTTC
1 TTTGCATTTCGTTATTTTC
*
8119381 TTTGCATTTTGTTATTTTC
1 TTTGCATTTCGTTATTTTC
8119400 TTTGCATT
1 TTTGCATT
8119408 CACATTAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.11, C:0.13, G:0.11, T:0.65
Consensus pattern (19 bp):
TTTGCATTTCGTTATTTTC
Found at i:8123003 original size:165 final size:165
Alignment explanation
Indices: 8122729--8123509 Score: 896
Period size: 165 Copynumber: 4.7 Consensus size: 165
8122719 TAAACAAACT
* * * * *
8122729 ATTTGCAGCTTAGCTCAAGGCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTTGAGTTCGATTACACTCA
* * * * * **
8122794 GCTTCAAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG-TGACCAAAAGAC
66 GCTTCAAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACC-AAAGAC
8122858 CTTTGAGTTCGACTACGCTCAGCT-CAACGGCACATC
130 CTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATC
****
8122894 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTTGAGTTCGATTACACTCA
*
8122959 GCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACC
66 GCTTCAAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACC
8123024 TTTGAGTTCGACTACGCTCAGCTCCAAGGCACATC
131 TTTGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * * *
8123059 ATTTACAGAATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTTGAGTTCGATTACACTCA
*
8123124 GCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACC
66 GCTTCAAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACC
* *
8123189 TTCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
131 TTTGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * * * * * * *
8123224 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTATGACCAAAAGACCTTTGAGTTCGACTACG
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATC--TG-CC-AAAGACCTTTGAGTTCGATTACA
* * * * *
8123289 TTCAGC-TCAACGACACATCATTTGC-GCCATAGCTTAAGTCGAGAAGGGCTATCTG----CCAA
62 CTCAGCTTCAAGGGCACATCATTTGCAG-CATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAA
** * * * * *
8123348 AGACCCCTGAGTTCGATTACACTCAGCTTCGAGGGCATATC
126 AGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCACATC
* * * * * *
8123389 ATTTGTAGCACAGCTTAAGTCTAGAAGGGTTGTCTGCTAACAAAAGACCTTTGAGTTCGACTACA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGC---C-AAAGACCTTTGAGTTCGATTACA
* * * * *
8123454 TTCAGC-TCAACGGCACAACATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGC
62 CTCAGCTTCAAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGC
8123510 TAAAGACCTT
Statistics
Matches: 550, Mismatches: 53, Indels: 25
0.88 0.08 0.04
Matches are distributed among these distances:
162 1 0.00
163 2 0.00
164 26 0.05
165 442 0.80
166 7 0.01
167 3 0.01
168 44 0.08
169 25 0.05
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (165 bp):
ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTTGAGTTCGATTACACTCA
GCTTCAAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACC
TTTGAGTTCGACTACGCTCAGCTCCAAGGCACATC
Found at i:8123272 original size:249 final size:246
Alignment explanation
Indices: 8122729--8123528 Score: 870
Period size: 249 Copynumber: 3.2 Consensus size: 246
8122719 TAAACAAACT
* * * * * *
8122729 ATTTGCAGCTTAGCTCAAGGCGAGAAGGGCTATC-TG-CCAAAGACCCTTAAGTTCGATTACACT
1 ATTTGCAGCATAACTCAAGGCGAGAAGGGCTATCTTGACCAAAGACCTTTGAGTTCGACTACGCT
* * * * * * *
8122792 CAGCTTCAAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGA
66 CAGC-TCAACGGCACATCATTTACAGCATAGCTTAAGTCAAGAAGGGCTATC--TG-CC-AAAGA
* * * * *
8122857 CCTTTGAGTTCGACTACGCTCAGC-TCAACGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAG
126 CCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAG
* ** * * * *
8122921 GGCTATCTG---CCAAAGACCCCCAAGTTCGATTACACTCAGCTTCGAGGGCACATC
191 GGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATC
* * *
8122975 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATC-TGCCAACCAAAGACCTTTGAGTTCGACTAC
1 ATTTGCAGCATAACTCAAGGCGAGAAGGGCTATCTTG---ACCAAAGACCTTTGAGTTCGACTAC
*
8123039 GCTCAGCTCCAA-GGCACATCATTTACAGAATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGAC
63 GCTCAGCT-CAACGGCACATCATTTACAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGAC
*
8123103 CTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGG
127 CTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGG
* *
8123168 GTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
192 GTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATC
* * *
8123224 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTATGACCAAAAGACCTTTGAGTTCGACTACG
1 ATTTGCAGCATAACTCAAGGCGAGAAGGGCTATCT-TGACC-AAAGACCTTTGAGTTCGACTACG
* * * *
8123289 TTCAGCTCAACGACACATCATTTGC-GCCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACC
64 CTCAGCTCAACGGCACATCATTTACAG-CATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACC
* * * * *
8123353 -CCTGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTGTAGCACAGCTTAAGTCTAGAAGG
128 TTC-GAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGG
* * * * *
8123417 GTTGTCTGCTAACAAAAGACCTTTGAGTTCGACTACATTCAGCT-CAACGGCACAAC
192 GTTATCTGC-AACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAA-GGCACATC
* * * * *
8123473 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATC-TG-CTAAAGACCTTCGAGTTCGA
1 ATTTGCAGCATAACTCAAGGCGAGAAGGGCTATCTTGACCAAAGACCTTTGAGTTCGA
8123529 TTATATTCAA
Statistics
Matches: 475, Mismatches: 61, Indels: 37
0.83 0.11 0.06
Matches are distributed among these distances:
245 43 0.09
246 79 0.17
247 4 0.01
248 12 0.03
249 279 0.59
250 56 0.12
251 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (246 bp):
ATTTGCAGCATAACTCAAGGCGAGAAGGGCTATCTTGACCAAAGACCTTTGAGTTCGACTACGCT
CAGCTCAACGGCACATCATTTACAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCTTC
GAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTA
TCTGCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATC
Found at i:8124331 original size:38 final size:37
Alignment explanation
Indices: 8124205--8124533 Score: 277
Period size: 38 Copynumber: 8.6 Consensus size: 37
8124195 TGAAAATACG
*
8124205 TATATAATATATAGTTTTTAAAACATTTTTGAAAA-C
1 TATATAATATATAGTTTTTAAAACATTTTTGAAAATT
* * * *
8124241 TATATAATATACAGTTTTTAAAAAAACGTTTTAGAAAATA
1 TATATAATATATAGTTTTT---AAAACATTTTTGAAAATT
* *
8124281 TAGATAATATATAATTTTTAAAATCATTTTTG-AAATCT
1 TATATAATATATAGTTTTTAAAA-CATTTTTGAAAAT-T
* *
8124319 TATATAATATATAATTTTGAAAACATTTTTGAAAATT
1 TATATAATATATAGTTTTTAAAACATTTTTGAAAATT
*
8124356 TATATAATATATAGTTTTGAAAACA-TTTTGAAAACATT
1 TATATAATATATAGTTTTTAAAACATTTTTG-AAA-ATT
** * *
8124394 TATATGTTATATGGTTTTTAAAAAAAAACATTTTTGAAAATA
1 TATATAATATATAGTTTTT-----AAAACATTTTTGAAAATT
** ** *
8124436 TATATAATATATAACTTTTAAAACATTTTAAAAAATA
1 TATATAATATATAGTTTTTAAAACATTTTTGAAAATT
* * * * *
8124473 CATATATTATATAGTTTTTTGAAACGTTTTTGAAAATA
1 TATATAATATATAG-TTTTTAAAACATTTTTGAAAATT
** *
8124511 CGTATAATATATAGTTTTAAAAA
1 TATATAATATATAGTTTTTAAAA
8124534 AAAATATTTT
Statistics
Matches: 240, Mismatches: 37, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
36 23 0.10
37 78 0.32
38 79 0.33
39 14 0.06
40 16 0.07
42 16 0.07
43 9 0.04
44 5 0.02
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.43
Consensus pattern (37 bp):
TATATAATATATAGTTTTTAAAACATTTTTGAAAATT
Found at i:8124359 original size:37 final size:37
Alignment explanation
Indices: 8124193--8124533 Score: 240
Period size: 37 Copynumber: 8.9 Consensus size: 37
8124183 GCAACCGATC
* *
8124193 TTTGAAAATACGTATATAATATATAGTTTTTAAAACATT
1 TTTGAAAATA--TATATAATATATAATTTTAAAAACATT
* * * *
8124232 TTTGAAAA-CTATATAATATACAGTTTTTAAAAAAACGTT
1 TTTGAAAATATATATAATATATA-ATTTT--AAAAACATT
* * *
8124271 TTAGAAAATATAGATAATATATAATTTTTAAAATCATT
1 TTTGAAAATATATATAATATATAA-TTTTAAAAACATT
* *
8124309 TTTG-AAATCTTATATAATATATAATTTTGAAAACATT
1 TTTGAAAAT-ATATATAATATATAATTTTAAAAACATT
* * *
8124346 TTTGAAAATTTATATAATATATAGTTTTGAAAACA-T
1 TTTGAAAATATATATAATATATAATTTTAAAAACATT
* ** **
8124382 TTTGAAAACATTTATATGTTATATGGTTTTTAAAAAAAAACATT
1 TTTG-AAA-ATATATATAATATAT-AATTTT----AAAAACATT
8124426 TTTGAAAATATATATAATATATAACTTTT-AAAACATT
1 TTTGAAAATATATATAATATATAA-TTTTAAAAACATT
** * * * ** *
8124463 TTAAAAAATACATATATTATATAGTTTTTTGAAACGTT
1 TTTGAAAATATATATAATATATA-ATTTTAAAAACATT
** *
8124501 TTTGAAAATACGTATAATATATAGTTTTAAAAA
1 TTTGAAAATATATATAATATATAATTTTAAAAA
8124534 AAAATATTTT
Statistics
Matches: 242, Mismatches: 42, Indels: 38
0.75 0.13 0.12
Matches are distributed among these distances:
36 17 0.07
37 89 0.37
38 65 0.27
39 26 0.11
40 15 0.06
42 16 0.07
43 9 0.04
44 5 0.02
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (37 bp):
TTTGAAAATATATATAATATATAATTTTAAAAACATT
Found at i:8124386 original size:11 final size:11
Alignment explanation
Indices: 8124370--8124394 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8124360 TAATATATAG
8124370 TTTTGAAAACA
1 TTTTGAAAACA
8124381 TTTTGAAAACA
1 TTTTGAAAACA
8124392 TTT
1 TTT
8124395 ATATGTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:8124545 original size:117 final size:114
Alignment explanation
Indices: 8124193--8124544 Score: 283
Period size: 117 Copynumber: 3.0 Consensus size: 114
8124183 GCAACCGATC
* ** *
8124193 TTTGAAAATACGTATATAATATATAGTTTTTAAAACATTTTTGAAA-ACTATATAATATACAGTT
1 TTTGAAAATA--TATATAATATATA-ATTTTAAAACATTTTAAAAATAC-ATATAATATATAGTT
** * * *
8124257 TTTAAAAAAACGTTTTAGAAAATATAG-ATAATATATAATTTT----TAAAATCATT
62 TTT--TGAAACGTTTTTGAAAATA-AGTATAATATATAGTTTTAAAAAAAAAT-ATT
* * **
8124309 TTTG-AAATCTTATATAATATATAATTTTGAAAACATTTTTGAAAATTTATATAATATATAG--T
1 TTTGAAAAT-ATATATAATATATAATTTT-AAAACA-TTTTAAAAATACATATAATATATAGTTT
* * ** * * *
8124371 TTTGAAAAC-ATTTTGAAAACATTTATATGTTATATGGTTTTTAAAAAAAAACATT
63 TTTG-AAACGTTTTTGAAAATAAGTATA--ATATATAG-TTTTAAAAAAAAATATT
*
8124426 TTTGAAAATATATATAATATATAACTTTTAAAACATTTTAAAAAATACATATATTATATAGTTTT
1 TTTGAAAATATATATAATATATAA-TTTTAAAACATTTT-AAAAATACATATAATATATAGTTTT
*
8124491 TTGAAACGTTTTTGAAAATACGTATAATATATAGTTTTAAAAAAAAATATT
64 TTGAAACGTTTTTGAAAATAAGTATAATATATAGTTTTAAAAAAAAATATT
8124542 TTT
1 TTT
8124545 TTAATTTATA
Statistics
Matches: 186, Mismatches: 31, Indels: 38
0.73 0.12 0.15
Matches are distributed among these distances:
111 12 0.06
112 4 0.02
113 12 0.06
114 23 0.12
115 23 0.12
116 27 0.15
117 50 0.27
118 16 0.09
119 19 0.10
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (114 bp):
TTTGAAAATATATATAATATATAATTTTAAAACATTTTAAAAATACATATAATATATAGTTTTTT
GAAACGTTTTTGAAAATAAGTATAATATATAGTTTTAAAAAAAAATATT
Found at i:8124936 original size:12 final size:12
Alignment explanation
Indices: 8124919--8124949 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
8124909 CGACGAAGGA
8124919 GGAGGTATCATC
1 GGAGGTATCATC
8124931 GGAGGTATCATC
1 GGAGGTATCATC
8124943 GGAGGTA
1 GGAGGTA
8124950 CACAAAATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.13, G:0.39, T:0.23
Consensus pattern (12 bp):
GGAGGTATCATC
Found at i:8128769 original size:24 final size:24
Alignment explanation
Indices: 8128749--8128812 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
8128739 TGAATTCTGT
*
8128749 TATGATACCTGACCTGGATTCTAA
1 TATGATACATGACCTGGATTCTAA
*
8128773 TCTGATACATGACCTGGATTCTAA
1 TATGATACATGACCTGGATTCTAA
* * *
8128797 TCTAATACTTGACCTG
1 TATGATACATGACCTG
8128813 AATTATGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (24 bp):
TATGATACATGACCTGGATTCTAA
Found at i:8132946 original size:23 final size:23
Alignment explanation
Indices: 8132920--8132994 Score: 73
Period size: 23 Copynumber: 3.2 Consensus size: 23
8132910 TATGATTTGA
*
8132920 ATTCTGTTATGATACCTGACTAG
1 ATTCTGATATGATACCTGACTAG
*
8132943 ATTCTGATCTGATA-CTGA-TATGG
1 ATTCTGATATGATACCTGACTA--G
* *
8132966 ATTCTGGTATGATACATGACCTAG
1 ATTCTGATATGATACCTGA-CTAG
8132990 ATTCT
1 ATTCT
8132995 TATCTGCTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
21 2 0.05
22 4 0.10
23 25 0.60
24 9 0.21
26 2 0.05
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (23 bp):
ATTCTGATATGATACCTGACTAG
Found at i:8133743 original size:14 final size:14
Alignment explanation
Indices: 8133724--8133750 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8133714 TGGTGATTGA
8133724 TTTTTTTTTAAATC
1 TTTTTTTTTAAATC
8133738 TTTTTTTTTAAAT
1 TTTTTTTTTAAAT
8133751 ACAAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTTTTAAATC
Found at i:8135415 original size:24 final size:24
Alignment explanation
Indices: 8135365--8135416 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
8135355 TTGAGAATGT
* * *
8135365 TAATAATATTGATATTGATAGTTC
1 TAATAATATTGACATTGATAATAC
* *
8135389 TAATAATGTTGACGTTGATAATAC
1 TAATAATATTGACATTGATAATAC
8135413 TAAT
1 TAAT
8135417 GCTTTTGATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.42
Consensus pattern (24 bp):
TAATAATATTGACATTGATAATAC
Found at i:8141282 original size:89 final size:90
Alignment explanation
Indices: 8140995--8141354 Score: 470
Period size: 90 Copynumber: 4.0 Consensus size: 90
8140985 ATTACAGAGT
* * * * *
8140995 TAAGGATTCCCTTGGGTAGGCATATTGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTTGTTA
1 TAAGGATACCCTTGGGTAGGCCTATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTTGCTG
* **
8141060 TGTGTTTAAGGTAACCCTACAAATC
66 TGTGCTTAAGGTAACCCTACGGATC
* *
8141085 TAATGATACCCTTGGGTAGGCCCATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTTGCTG
1 TAAGGATACCCTTGGGTAGGCCTATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTTGCTG
*
8141150 TGTGCTTAAGGTAACCCTACGGGTC
66 TGTGCTTAAGGTAACCCTACGGATC
* * * *
8141175 TAAGGATACCCTTAGGTAGGCCTATAGGCCCCAATGCATATCCTTAGGTTGGTTTCC-TTCGCTG
1 TAAGGATACCCTTGGGTAGGCCTATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTTGCTG
**
8141239 TGTGCCGAAGGTAACCCTACGGATC
66 TGTGCTTAAGGTAACCCTACGGATC
* * * * * *
8141264 TAAGGATATCCTTGGGTAGGCCTATAGGTCCCAAGGTATATCCTTATGTTGGCTCCCTTTTTGTT
1 TAAGGATACCCTTGGGTAGGCCTATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCC-TTTTGCT
* *
8141329 GTGTGCTGAGGGTAAGCCCTACGGAT
65 GTGTGCTTAAGGTAA-CCCTACGGAT
8141355 GTAGTTCTGG
Statistics
Matches: 235, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
89 77 0.33
90 131 0.56
91 17 0.07
92 10 0.04
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (90 bp):
TAAGGATACCCTTGGGTAGGCCTATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTTGCTG
TGTGCTTAAGGTAACCCTACGGATC
Found at i:8141308 original size:179 final size:182
Alignment explanation
Indices: 8140995--8141352 Score: 479
Period size: 179 Copynumber: 2.0 Consensus size: 182
8140985 ATTACAGAGT
* * * * *
8140995 TAAGGATTCCCTTGGGTAGGCATATTGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTTGTTA
1 TAAGGATACCCTTAGGTAGGCATATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTCGCTA
*** *
8141060 TGTGTTTAAGGTAACCCTACAAATCTAATGATACCCTTGGGTAGGCCCATAGGCCCCAAGGCATA
66 TGTGCCGAAGGTAACCCTACAAATCTAAGGATACCCTTGGGTAGGCCCATAGGCCCCAAGGCATA
* *
8141125 TCCTTAGGTTGGTTCCC-TTTTGCTGTGTGCTTAAGGTAA-CCCTACGGGTC
131 TCCTTAGGTTGGCTCCCTTTTTGCTGTGTGCTGAAGGTAAGCCCTACGGGTC
* * * *
8141175 TAAGGATACCCTTAGGTAGGCCTATAGGCCCCAATGCATATCCTTAGGTTGGTTTCC-TTCGCTG
1 TAAGGATACCCTTAGGTAGGCATATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTCGCTA
** * * * *
8141239 TGTGCCGAAGGTAACCCTACGGATCTAAGGATATCCTTGGGTAGGCCTATAGGTCCCAAGGTATA
66 TGTGCCGAAGGTAACCCTACAAATCTAAGGATACCCTTGGGTAGGCCCATAGGCCCCAAGGCATA
* * *
8141304 TCCTTATGTTGGCTCCCTTTTTGTTGTGTGCTGAGGGTAAGCCCTACGG
131 TCCTTAGGTTGGCTCCCTTTTTGCTGTGTGCTGAAGGTAAGCCCTACGG
8141353 ATGTAGTTCT
Statistics
Matches: 152, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
179 74 0.49
180 70 0.46
181 8 0.05
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (182 bp):
TAAGGATACCCTTAGGTAGGCATATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTCGCTA
TGTGCCGAAGGTAACCCTACAAATCTAAGGATACCCTTGGGTAGGCCCATAGGCCCCAAGGCATA
TCCTTAGGTTGGCTCCCTTTTTGCTGTGTGCTGAAGGTAAGCCCTACGGGTC
Found at i:8145089 original size:26 final size:26
Alignment explanation
Indices: 8145060--8145114 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
8145050 CGTAGGCGAA
8145060 GCTTTGAGAATCTTCATGTAGGTCAC
1 GCTTTGAGAATCTTCATGTAGGTCAC
8145086 GCTTTGAGAATCTTCATGTAGGTCAC
1 GCTTTGAGAATCTTCATGTAGGTCAC
8145112 GCT
1 GCT
8145115 GGGTGATGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.35
Consensus pattern (26 bp):
GCTTTGAGAATCTTCATGTAGGTCAC
Found at i:8147604 original size:13 final size:13
Alignment explanation
Indices: 8147586--8147612 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8147576 ATATTTTATA
8147586 TTATTTTAATATT
1 TTATTTTAATATT
8147599 TTATTTTAATATT
1 TTATTTTAATATT
8147612 T
1 T
8147613 ATGATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATTTTAATATT
Found at i:8148100 original size:17 final size:16
Alignment explanation
Indices: 8148071--8148112 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
8148061 AACACAAATC
8148071 AATT-TTTTATCTTTTAA
1 AATTATTTTATC--TTAA
8148088 AATTATTTT-TCTTAA
1 AATTATTTTATCTTAA
8148103 AATTATTTTA
1 AATTATTTTA
8148113 AAAGGTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 13 0.57
17 6 0.26
18 4 0.17
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
AATTATTTTATCTTAA
Found at i:8150870 original size:29 final size:29
Alignment explanation
Indices: 8150838--8150910 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
8150828 TGACCGGTTA
*
8150838 GACCGTTGACTTTGAACGGTATGACCCTT
1 GACCGTTGACTTTGAACGGTATAACCCTT
* *
8150867 GACCGTTGACTTTGATCGGTCTAACCCTT
1 GACCGTTGACTTTGAACGGTATAACCCTT
*
8150896 GACCGTTGACATTGA
1 GACCGTTGACTTTGA
8150911 CCGAAAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (29 bp):
GACCGTTGACTTTGAACGGTATAACCCTT
Found at i:8151911 original size:25 final size:27
Alignment explanation
Indices: 8151881--8151930 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
8151871 GGATTTATAG
8151881 AAATG-CCCTAAAGTGT-AAATGACCA
1 AAATGCCCCTAAAGTGTAAAATGACCA
8151906 AAATGCCCCTAAAGTGTAAAATGAC
1 AAATGCCCCTAAAGTGTAAAATGAC
8151931 TTAAAGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 5 0.22
26 11 0.48
27 7 0.30
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (27 bp):
AAATGCCCCTAAAGTGTAAAATGACCA
Found at i:8163527 original size:2 final size:2
Alignment explanation
Indices: 8163520--8163565 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
8163510 CCTATATGAT
8163520 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8163562 TA TA
1 TA TA
8163566 CTCTCGTTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8168314 original size:82 final size:81
Alignment explanation
Indices: 8168100--8168464 Score: 419
Period size: 82 Copynumber: 4.4 Consensus size: 81
8168090 CAAAGATTTC
* * * * * * * *
8168100 TCAAGTTTGATCTCCCCTGAAAGAATAGTGGAGCATACCCGTCTTCAAAAATGGATCTGACTACC
1 TCAAGTCTGATCTCCCCT-AAAAAATAGTAGAGCAGACTCATCTTCCAAAATTGATCTGACTACC
*
8168165 CGAAAAAAGAGGCTCAGA
65 C-AAAAAAGAGGCACAGA
*
8168183 TCAAGTCTGATCTCCCCTGAAAGAATAGTAGAGCAGAC-CATCTTCCAAAATTGATCTGACTACC
1 TCAAGTCTGATCTCCCCT-AAAAAATAGTAGAGCAGACTCATCTTCCAAAATTGATCTGACTACC
*
8168247 CAAAAAAGAGGCACATA
65 CAAAAAAGAGGCACAGA
* * * * * *
8168264 TCAAGTCTGATATCCCCTAAATAAATAGTAAAGGAGACTCGTCATCCAAAATTGATTTGACTACC
1 TCAAGTCTGATCTCCCCTAAA-AAATAGTAGAGCAGACTCATCTTCCAAAATTGATCTGACTACC
* *
8168329 CGAAAAATAGGCACAGA
65 CAAAAAAGAGGCACAGA
8168346 TCAAGTCTGATCTCCCCTAAAAGAATAG-AGGAGCAGACTCATCTTCCAAAATTGATCTGACTAC
1 TCAAGTCTGATCTCCCCTAAAA-AATAGTA-GAGCAGACTCATCTTCCAAAATTGATCTGACTAC
** * *
8168410 CTGAAAAAGAGGAACAAA
64 CCAAAAAAGAGGCACAGA
* * *
8168428 TCAAGTTTGATCTCCCCTAAAAGAAGAGTGGAGCAGA
1 TCAAGTCTGATCTCCCCTAAAA-AATAGTAGAGCAGA
8168465 TTTCCCGTCA
Statistics
Matches: 246, Mismatches: 31, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
80 3 0.01
81 46 0.19
82 162 0.66
83 35 0.14
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (81 bp):
TCAAGTCTGATCTCCCCTAAAAAATAGTAGAGCAGACTCATCTTCCAAAATTGATCTGACTACCC
AAAAAAGAGGCACAGA
Found at i:8168433 original size:164 final size:164
Alignment explanation
Indices: 8168147--8168448 Score: 473
Period size: 164 Copynumber: 1.8 Consensus size: 164
8168137 CCCGTCTTCA
* *
8168147 AAAATGGATCTGACTACCCGAAAAAAGAGGCTCAGATCAAGTCTGATCTCCCCTGAAAGAATAGT
1 AAAATGGATCTGACTACCCGAAAAAAGAGGCACAGATCAAGTCTGATCTCCCCTAAAAGAATAGT
* *
8168212 AGAGCAGACCATCTTCCAAAATTGATCTGACTACCCAAAAAAGAGGCACATATCAAGTCTGATAT
66 AGAGCAGACCATCTTCCAAAATTGATCTGACTACCCAAAAAAGAGGAACAAATCAAGTCTGATAT
8168277 CCCCTAAATAAATAGTAAAGGAGACTCGTCATCC
131 CCCCTAAATAAATAGTAAAGGAGACTCGTCATCC
* * *
8168311 AAAATTGATTTGACTACCCG-AAAAATAGGCACAGATCAAGTCTGATCTCCCCTAAAAGAATAG-
1 AAAATGGATCTGACTACCCGAAAAAAGAGGCACAGATCAAGTCTGATCTCCCCTAAAAGAATAGT
** *
8168374 AGGAGCAGACTCATCTTCCAAAATTGATCTGACTACCTGAAAAAGAGGAACAAATCAAGTTTGAT
66 A-GAGCAGAC-CATCTTCCAAAATTGATCTGACTACCCAAAAAAGAGGAACAAATCAAGTCTGAT
*
8168439 CTCCCCTAAA
129 ATCCCCTAAA
8168449 AGAAGAGTGG
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
162 1 0.01
163 48 0.38
164 76 0.61
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.22
Consensus pattern (164 bp):
AAAATGGATCTGACTACCCGAAAAAAGAGGCACAGATCAAGTCTGATCTCCCCTAAAAGAATAGT
AGAGCAGACCATCTTCCAAAATTGATCTGACTACCCAAAAAAGAGGAACAAATCAAGTCTGATAT
CCCCTAAATAAATAGTAAAGGAGACTCGTCATCC
Found at i:8170118 original size:94 final size:94
Alignment explanation
Indices: 8169937--8170125 Score: 211
Period size: 94 Copynumber: 2.0 Consensus size: 94
8169927 AATACCGATG
* * * *
8169937 AGGTAGTATCAATACCATGAAAAAGGTATAGATACCAAGAAGCATCGAATCTAATTGTGGTATTG
1 AGGTAATATCAATACCATGAAAAAGGTATAGATACCAAGAAACATCAAATCTAATTGTGGTATCG
* *
8170002 ATACCGATAGTGGGTATCGGTACCATAGT
66 ATACCGATAGTAGATATCGGTACCATAGT
* ** * * * *
8170031 AGGTAATATCGATACCATGGTAAGGGTATCGATACC-AGACAACATCAAATCTATTTTTGGTATC
1 AGGTAATATCAATACCATGAAAAAGGTATAGATACCAAGA-AACATCAAATCTAATTGTGGTATC
* *
8170095 GATACCTGA-AGTAGATATTGGTACTATAGT
65 GATACC-GATAGTAGATATCGGTACCATAGT
8170125 A
1 A
8170126 TAGAATTATC
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
93 3 0.04
94 73 0.94
95 2 0.03
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (94 bp):
AGGTAATATCAATACCATGAAAAAGGTATAGATACCAAGAAACATCAAATCTAATTGTGGTATCG
ATACCGATAGTAGATATCGGTACCATAGT
Found at i:8170548 original size:42 final size:42
Alignment explanation
Indices: 8170483--8170566 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
8170473 CATCCTATGT
* *
8170483 GGATGAATAACCATTTCAACACTAAGTGTGTATTTCACGGAA
1 GGATCAATAACCATTTCAACACTAAGTGTGCATTTCACGGAA
* **
8170525 GGATCAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAA
1 GGATCAATAACCATTTCAACACTAAGTGTGCATTTCACGGAA
8170567 TTCATCCTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (42 bp):
GGATCAATAACCATTTCAACACTAAGTGTGCATTTCACGGAA
Found at i:8170613 original size:54 final size:54
Alignment explanation
Indices: 8170525--8170718 Score: 298
Period size: 54 Copynumber: 3.6 Consensus size: 54
8170515 TTTCACGGAA
*
8170525 GGATCAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATTCATCCTATGT
1 GGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATTCATCCTATGT
** * *
8170579 GGATGAATAATTGTTTCGGCACTAAGTGTACATTTCACTGAATTCATCCTATGT
1 GGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATTCATCCTATGT
* * *
8170633 GGATGAATAACCATTTCGGCACTAAGTGTGCATTTAACGAAATTCATCCTATGT
1 GGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATTCATCCTATGT
* *
8170687 GGATGAATAACCGTTTTGGCACTAGGTGTGCA
1 GGATGAATAACCGTTTCGGCACTAAGTGTGCA
8170719 AAGCACATAA
Statistics
Matches: 125, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 125 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (54 bp):
GGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATTCATCCTATGT
Found at i:8176240 original size:94 final size:95
Alignment explanation
Indices: 8176112--8176296 Score: 248
Period size: 94 Copynumber: 2.0 Consensus size: 95
8176102 ATACCGATGA
*
8176112 GGTAGTATCGATACCATGGAAAAGGTATCGATACCA-AGAAACATCGAATCTAATTTTGGTA-CG
1 GGTAGTATCGATACCATGGAAAAGGTATCGATACCATA-AAACATCGAACCTAATTTTGGTATCG
* * * *
8176175 ATACCGGCAGGGGGTATCGGTACCATAATAG
65 ACACCCGAAGGAGGTATCGGTACCATAATAG
* * * * *
8176206 GGTAGTATCGATACCATGGTAAGGGTATTGATACCATACAACATCGAACCTATTTTTGGTATCGA
1 GGTAGTATCGATACCATGGAAAAGGTATCGATACCATAAAACATCGAACCTAATTTTGGTATCGA
*
8176271 CACCCGAATGAGGTATCGGTACCATA
66 CACCCGAAGGAGGTATCGGTACCATA
8176297 GTATAGAAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
94 53 0.68
95 25 0.32
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (95 bp):
GGTAGTATCGATACCATGGAAAAGGTATCGATACCATAAAACATCGAACCTAATTTTGGTATCGA
CACCCGAAGGAGGTATCGGTACCATAATAG
Found at i:8176514 original size:6 final size:6
Alignment explanation
Indices: 8176503--8176544 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
8176493 GTTTTTGTCC
8176503 ATTTTT ATTTTTT ATTTTTT ATTTTT A--TTT ATTTTT ATTTTT
1 ATTTTT A-TTTTT A-TTTTT ATTTTT ATTTTT ATTTTT ATTTTT
8176545 TTATTATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.12
6 16 0.48
7 13 0.39
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:8176516 original size:7 final size:7
Alignment explanation
Indices: 8176504--8176545 Score: 57
Period size: 7 Copynumber: 5.7 Consensus size: 7
8176494 TTTTTGTCCA
8176504 TTTTTAT
1 TTTTTAT
8176511 TTTTTAT
1 TTTTTAT
8176518 TTTTTAT
1 TTTTTAT
*
8176525 TTTTATTT
1 TTTT-TAT
8176533 ATTTTTAT
1 -TTTTTAT
8176541 TTTTT
1 TTTTT
8176546 TATTATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 23 0.74
8 4 0.13
9 4 0.13
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTAT
Found at i:8194704 original size:25 final size:24
Alignment explanation
Indices: 8194667--8194713 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
8194657 TTGAAGAAGA
*
8194667 AGAAAAAACAGAAAAGAAAAAAAG
1 AGAAAAAAAAGAAAAGAAAAAAAG
*
8194691 AGAAAAGAAAAGAAAATAAAAAA
1 AGAAAA-AAAAGAAAAGAAAAAA
8194714 TAAAAAAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (24 bp):
AGAAAAAAAAGAAAAGAAAAAAAG
Found at i:8194711 original size:15 final size:14
Alignment explanation
Indices: 8194660--8194721 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 14
8194650 ATTATGCTTG
8194660 AAGAAGAAGAAAAAA
1 AAGAA-AAGAAAAAA
*
8194675 CAGAAAAGAAAAAA
1 AAGAAAAGAAAAAA
8194689 AGAGAAAAGAAAAGAA
1 A-AGAAAAGAAAA-AA
*
8194705 AATAAAA-AATAAAA
1 AAGAAAAGAA-AAAA
8194719 AAG
1 AAG
8194722 GGTCAATATG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
14 15 0.38
15 22 0.55
16 3 0.08
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.03
Consensus pattern (14 bp):
AAGAAAAGAAAAAA
Found at i:8194718 original size:5 final size:5
Alignment explanation
Indices: 8194660--8194711 Score: 54
Period size: 5 Copynumber: 10.4 Consensus size: 5
8194650 ATTATGCTTG
* *
8194660 AAGAA GAAGAA AA-AA CAGAA AAGAA AA-AA AGAGAA AAGAA AAGAA AATAA
1 AAGAA -AAGAA AAGAA AAGAA AAGAA AAGAA A-AGAA AAGAA AAGAA AAGAA
8194710 AA
1 AA
8194712 AATAAAAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
4 6 0.15
5 26 0.65
6 8 0.20
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (5 bp):
AAGAA
Found at i:8195834 original size:123 final size:123
Alignment explanation
Indices: 8195617--8196190 Score: 770
Period size: 123 Copynumber: 4.7 Consensus size: 123
8195607 CTCGATGGAT
* *
8195617 CAACATTTCCAGAGGGAGTTCATAACGAGAAGAACT-ATCTGAGAAGGAA-AA-AAGTTCATAAT
1 CAACATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAGAAGGAAGAAGAAGTTCATAAT
* * *
8195679 GAGAAGAACTAGTTCAACCTTTTGCTCGACTCTATCACAGTATGAGATAGATCAGCAC
66 GAGAAGAACTTGTTCAACCTTATGCTCGACTCTATCACAGTAAGAGATAGATCAGCAC
* * * *
8195737 TAACATTTCCAGAGAGAGTTCATAATGTGAAGAACTCGTCTGAGAAGGAAGAAGAAGTTCATAAC
1 CAACATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAGAAGGAAGAAGAAGTTCATAAT
* * *
8195802 GAGAAGAACTTGTTCAACCTTATGCTCGACTCTATCACAGAAAAAGATAGATCAACAC
66 GAGAAGAACTTGTTCAACCTTATGCTCGACTCTATCACAGTAAGAGATAGATCAGCAC
* * * *
8195860 CAACATTTCTAGAAAGAGTTCATAATGAGAAGAACTTATCTGAGAAAGAAGAAGAAGTTCATAAT
1 CAACATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAGAAGGAAGAAGAAGTTCATAAT
* * *
8195925 GAGAAGAACTTGTTCAACCTTTTGCTCAACTCTATCATAG-ACAGAGATAGATCAGCAC
66 GAGAAGAACTTGTTCAACCTTATGCTCGACTCTATCACAGTA-AGAGATAGATCAGCAC
* *
8195983 CAATATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAGAAGGAAGAATAAGTTCATAAT
1 CAACATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAGAAGGAAGAAGAAGTTCATAAT
* * * * * *
8196048 GAGAAGAACTTGTTCCACCTTA-GCTTGATTC-ATCACA-TATGGAGGTAGATCAGCAT
66 GAGAAGAACTTGTTCAACCTTATGCTCGACTCTATCACAGTA-AGAGATAGATCAGCAC
* * *
8196104 CAACATTTCCAGA-AGGAGTTCATAATTAGAAGAACTCATCTGA-AGAGGAAAAAGAAGTTCAAA
1 CAACATTTCCAGAGA-GAGTTCATAATGAGAAGAACTCATCTGAGA-AGGAAGAAGAAGTTCATA
*
8196167 ATGAGAAGAACTTGTTCGACCTTA
64 ATGAGAAGAACTTGTTCAACCTTA
8196191 GCTTGATTAA
Statistics
Matches: 400, Mismatches: 47, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
120 34 0.09
121 108 0.27
122 9 0.02
123 249 0.62
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.24
Consensus pattern (123 bp):
CAACATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAGAAGGAAGAAGAAGTTCATAAT
GAGAAGAACTTGTTCAACCTTATGCTCGACTCTATCACAGTAAGAGATAGATCAGCAC
Found at i:8195939 original size:20 final size:20
Alignment explanation
Indices: 8195877--8195940 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 20
8195867 TCTAGAAAGA
8195877 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* * * *
8195897 ATCTGAGAAAGAAGAAGAA---
1 GT-TCATAATG-AGAAGAACTT
8195916 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
8195936 GTTCA
1 GTTCA
8195941 ACCTTTTGCT
Statistics
Matches: 31, Mismatches: 8, Indels: 10
0.63 0.16 0.20
Matches are distributed among these distances:
17 7 0.23
18 5 0.16
19 1 0.03
20 6 0.19
21 5 0.16
22 7 0.23
ACGTcount: A:0.44, C:0.09, G:0.22, T:0.25
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:8196605 original size:17 final size:15
Alignment explanation
Indices: 8196564--8196611 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
8196554 TTGTCCATTT
8196564 TTTTTTATT-TTTTA
1 TTTTTTATTATTTTA
*
8196578 TTTTTTTTTATTTTCA
1 TTTTTTATTATTTT-A
*
8196594 TTTTATTATTATATTA
1 TTTT-TTATTATTTTA
8196610 TT
1 TT
8196612 ATTAATAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 8 0.29
15 4 0.14
16 8 0.29
17 8 0.29
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTATTATTTTA
Found at i:8199098 original size:54 final size:54
Alignment explanation
Indices: 8198802--8199100 Score: 463
Period size: 54 Copynumber: 5.5 Consensus size: 54
8198792 AATTCATCCA
* * *
8198802 CATCCTATGTTGATGAATAACCGTTTCGGAACTAAGTGTGCATTTCACAGAATT
1 CATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATT
* *
8198856 TATCCTATGTGGATGAATAACCGTTTTGGCACTAAGTGTGCATTTCACGGAATT
1 CATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATT
* * * *
8198910 GATGCTATGTGGATGAATAACCGTTTTGGCACTAAGTGTGCATTTCACAGAATT
1 CATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATT
* * *
8198964 CATCCTATGTGGATAAATAACCGTTTTGGCACTAAGTGTGCATTTCACGAAATT
1 CATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATT
* *
8199018 CATCCTATGTGGATGAATAACCGTTTCGGAACTAAGTTTGCATTTCACGGAATT
1 CATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATT
*
8199072 CATCCTATGTGGATGAATAATCGTTTCGG
1 CATCCTATGTGGATGAATAACCGTTTCGG
8199101 TAGTAGGTGT
Statistics
Matches: 226, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 226 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (54 bp):
CATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATT
Found at i:8199169 original size:162 final size:162
Alignment explanation
Indices: 8198832--8199131 Score: 406
Period size: 162 Copynumber: 1.9 Consensus size: 162
8198822 CCGTTTCGGA
* * *
8198832 ACTAAGTGTGCATTTCACAGAATTTATCCTATGTGGATGAATAACCGTTTTGGCACTAAGTGTGC
1 ACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTCGGAACTAAGTGTGC
* * * ***
8198897 ATTTCACGGAATTGATGCTATGTGGATGAATAACCGTTTTGGCACTAAGTGTGCATTTCACAGAA
66 ATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCAAAGCACAGAA
** **
8198962 TTCATCCTATGTGGATAAATAACCGTTTTGGC
131 TTCATAATATGTGGATAAATAACCGTAATGGC
*
8198994 ACTAAGTGTGCATTTCAC-GAAATTCATCCTATGTGGATGAATAACCGTTTCGGAACTAAGTTTG
1 ACTAAGTGTGCATTTCACAG-AATTCATCCTATGTGGATGAATAACCGTTTCGGAACTAAGTGTG
* * * *
8199058 CATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGGTAGTAGGTGTGCAAAGCAC-GA
65 CATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCAAAGCACAGA
8199122 ATTTCATAAT
130 A-TTCATAAT
8199132 TTGTTTATGA
Statistics
Matches: 120, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
161 4 0.03
162 116 0.97
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (162 bp):
ACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTCGGAACTAAGTGTGC
ATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCAAAGCACAGAA
TTCATAATATGTGGATAAATAACCGTAATGGC
Found at i:8200641 original size:16 final size:15
Alignment explanation
Indices: 8200620--8200653 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
8200610 CGCCGCATGC
8200620 TTTTCCATTTTTCTCT
1 TTTTCCATTTTTCT-T
*
8200636 TTTTCCCTTTTTCTT
1 TTTTCCATTTTTCTT
8200651 TTT
1 TTT
8200654 GCAACCTCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCCATTTTTCTT
Found at i:8205359 original size:2 final size:2
Alignment explanation
Indices: 8205354--8205391 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8205344 TTGTATGCAA
8205354 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8205392 TTAGTATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8205626 original size:85 final size:84
Alignment explanation
Indices: 8205478--8205640 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 84
8205468 ATACAATCAC
* ** * * *
8205478 GACACACGAATGTGTATCATCTTTTTTTATGACGTGTGCTTCAACGTCACGCAATGTAAGTCATA
1 GACACACAAATGTGTATCATCTTAATTTATGACGGGGGCTTCAAC-TAACGCAATGTAAGTCATA
* *
8205543 CATGCGTGTCATATATTTAT
65 AATGCGCGTCATATATTTAT
*
8205563 GACACACAAATGTGTGTCATCTTAATTTATGACGGGGGCTTCAA-TAACGCTCAATG-AACGTCA
1 GACACACAAATGTGTATCATCTTAATTTATGACGGGGGCTTCAACTAACG--CAATGTAA-GTCA
8205626 TAAATGCGCGTCATA
63 TAAATGCGCGTCATA
8205641 AATGTGTGTC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
83 4 0.06
84 2 0.03
85 60 0.91
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (84 bp):
GACACACAAATGTGTATCATCTTAATTTATGACGGGGGCTTCAACTAACGCAATGTAAGTCATAA
ATGCGCGTCATATATTTAT
Found at i:8205637 original size:13 final size:13
Alignment explanation
Indices: 8205621--8205684 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
8205611 GCTCAATGAA
8205621 CGTCATAAATGCG
1 CGTCATAAATGCG
*
8205634 CGTCATAAATGTG
1 CGTCATAAATGCG
*
8205647 TGTCATAAATGCG
1 CGTCATAAATGCG
*
8205660 CGTCATAAATGTG
1 CGTCATAAATGCG
*
8205673 TGTCATAAATGC
1 CGTCATAAATGC
8205685 ACATCATGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (13 bp):
CGTCATAAATGCG
Found at i:8205691 original size:26 final size:26
Alignment explanation
Indices: 8205622--8205684 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
8205612 CTCAATGAAC
8205622 GTCATAAATGCGCGTCATAAATGTGT
1 GTCATAAATGCGCGTCATAAATGTGT
8205648 GTCATAAATGCGCGTCATAAATGTGT
1 GTCATAAATGCGCGTCATAAATGTGT
8205674 GTCATAAATGC
1 GTCATAAATGC
8205685 ACATCATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (26 bp):
GTCATAAATGCGCGTCATAAATGTGT
Found at i:8206797 original size:18 final size:18
Alignment explanation
Indices: 8206774--8206811 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8206764 TTACACAAGA
8206774 ATGGATTGTTATATATAT
1 ATGGATTGTTATATATAT
8206792 ATGGATTGTTATATATAT
1 ATGGATTGTTATATATAT
8206810 AT
1 AT
8206812 ATGTGTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (18 bp):
ATGGATTGTTATATATAT
Found at i:8206948 original size:21 final size:20
Alignment explanation
Indices: 8206909--8206948 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8206899 AACATAAACT
*
8206909 AAAAAATTCAACTCGACTCG
1 AAAAAATTCAACTCAACTCG
*
8206929 AAAAAATTTCAAGTCAACTC
1 AAAAAA-TTCAACTCAACTC
8206949 TGATTTGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.23, G:0.07, T:0.23
Consensus pattern (20 bp):
AAAAAATTCAACTCAACTCG
Found at i:8208393 original size:17 final size:18
Alignment explanation
Indices: 8208354--8208400 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
8208344 AATATCAATT
*
8208354 ATCAAAATAAATTTTTAA
1 ATCAAAATAAATTTCTAA
*
8208372 TTCAAAAT-AATTTCTAA
1 ATCAAAATAAATTTCTAA
8208389 ATCAAAAATAAA
1 ATC-AAAATAAA
8208401 AATAATTTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 10 0.42
18 12 0.50
19 2 0.08
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATCAAAATAAATTTCTAA
Found at i:8208506 original size:3 final size:3
Alignment explanation
Indices: 8208498--8208536 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
8208488 CGTCCTACAT
* *
8208498 TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8208537 AATAATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:8214555 original size:26 final size:26
Alignment explanation
Indices: 8214525--8214576 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8214515 AAACAAAAAG
8214525 GGGGCTACCTTTGATGCTTGACAAGT
1 GGGGCTACCTTTGATGCTTGACAAGT
8214551 GGGGCTACCTTTGATGCTTGACAAGT
1 GGGGCTACCTTTGATGCTTGACAAGT
8214577 CCTCACGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (26 bp):
GGGGCTACCTTTGATGCTTGACAAGT
Found at i:8215207 original size:3 final size:3
Alignment explanation
Indices: 8215193--8215251 Score: 73
Period size: 3 Copynumber: 18.7 Consensus size: 3
8215183 CCTGTAAATA
*
8215193 AAT AAA AAT AAT AAT AGAT AAAT AAT AAT AAT AAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT A-AT -AAT AAT AAT AAT AAT AAT AAT -AAT AAT
*
8215241 AAT AGT AAT AA
1 AAT AAT AAT AA
8215252 AAGATCCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
3 41 0.84
4 7 0.14
5 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:8215318 original size:12 final size:12
Alignment explanation
Indices: 8215301--8215325 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8215291 TTCAAATTTA
8215301 GAACTCAAATAT
1 GAACTCAAATAT
8215313 GAACTCAAATAT
1 GAACTCAAATAT
8215325 G
1 G
8215326 GTTTAGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (12 bp):
GAACTCAAATAT
Found at i:8215662 original size:31 final size:30
Alignment explanation
Indices: 8215607--8215664 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
8215597 ATTCTAGATA
*
8215607 AATAAAAAATACTAAATTAATTATATTTGT
1 AATAAAAAATAATAAATTAATTATATTTGT
8215637 AATAAAAATATAAT-AATATAATTATATT
1 AATAAAAA-ATAATAAAT-TAATTATATT
8215665 CCAATTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (30 bp):
AATAAAAAATAATAAATTAATTATATTTGT
Found at i:8219270 original size:38 final size:38
Alignment explanation
Indices: 8219223--8219308 Score: 145
Period size: 38 Copynumber: 2.3 Consensus size: 38
8219213 TTATATCTTC
* * *
8219223 TGAACTGCTTTTAATTACAGTAACATGTGCTTTTATTT
1 TGAATTGCTTTCAATTACAGTAACATGTGCCTTTATTT
8219261 TGAATTGCTTTCAATTACAGTAACATGTGCCTTTATTT
1 TGAATTGCTTTCAATTACAGTAACATGTGCCTTTATTT
8219299 TGAATTGCTT
1 TGAATTGCTT
8219309 ATCTTTTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.47
Consensus pattern (38 bp):
TGAATTGCTTTCAATTACAGTAACATGTGCCTTTATTT
Found at i:8221070 original size:32 final size:33
Alignment explanation
Indices: 8221031--8221101 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 33
8221021 CATCTAGTCA
* *
8221031 CCCATGCCTCCACAGATTCCAAGCCA-TCCACG
1 CCCATGCCTCCACAAATTCCAAGCAACTCCACG
*
8221063 CCCATGCCTCCACAAATTCTAAGCAAGCTCCACG
1 CCCATGCCTCCACAAATTCCAAGCAA-CTCCACG
8221097 CCCAT
1 CCCAT
8221102 ATGCTCCAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 23 0.68
34 11 0.32
ACGTcount: A:0.27, C:0.45, G:0.11, T:0.17
Consensus pattern (33 bp):
CCCATGCCTCCACAAATTCCAAGCAACTCCACG
Found at i:8221329 original size:25 final size:25
Alignment explanation
Indices: 8221301--8221358 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
8221291 ACTTACTATT
8221301 TTTATTTTAGTTATTCGAATGTCTC
1 TTTATTTTAGTTATTCGAATGTCTC
8221326 TTTATTTTAGTTATTCGAATGTCTC
1 TTTATTTTAGTTATTCGAATGTCTC
8221351 TTTATTTT
1 TTTATTTT
8221359 TAGATCCGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.10, G:0.10, T:0.60
Consensus pattern (25 bp):
TTTATTTTAGTTATTCGAATGTCTC
Found at i:8226026 original size:16 final size:16
Alignment explanation
Indices: 8226002--8226041 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
8225992 AGAAAAGAAG
8226002 AAAAGAAAAAAGGAAA
1 AAAAGAAAAAAGGAAA
*
8226018 AAAATAAAAAAGGAAA
1 AAAAGAAAAAAGGAAA
*
8226034 AAACGAAA
1 AAAAGAAA
8226042 TAAAAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGGAAA
Found at i:8226061 original size:13 final size:13
Alignment explanation
Indices: 8226044--8226073 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
8226034 AAACGAAATA
8226044 AAAAATAGAGAGAG
1 AAAAA-AGAGAGAG
8226058 AAAAAAGAGAGAG
1 AAAAAAGAGAGAG
8226071 AAA
1 AAA
8226074 TGAAAAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (13 bp):
AAAAAAGAGAGAG
Found at i:8226828 original size:92 final size:92
Alignment explanation
Indices: 8226649--8227175 Score: 619
Period size: 92 Copynumber: 5.7 Consensus size: 92
8226639 TATAAAATTT
*
8226649 ATACGGAGTTGGATCAGCATCATCAACATTGTCATTCTTTCTCGATTCCATCACATACGGAGTTG
1 ATACGGAGTTGGATCA--A-CATC-ACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTG
8226714 GAACAACACCAATACTTGGCTCATCCATCGC
62 GAACAACACCAATACTTGGCTCATCCATCGC
* * * * * *
8226745 ATACGGAGTTGGATCAACATCACATTGACATTGTTTCTTGATTTCATCACATACGGAGTTGGAGC
1 ATACGGAGTTGGATCAACATCACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTGGAAC
* * *
8226810 ATCACTAATGCATT-GCTCATCCATCGC
66 AACACCAATAC-TTGGCTCATCCATCGC
* * * * *
8226837 ATATGGAGTTGGATCAGCATCACATTGTCATTCCTGCTCGATTCCATCATATACAGAGTTGGAAC
1 ATACGGAGTTGGATCAACATCACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTGGAAC
* * * *
8226902 ATCACCAATGCTTGGCTCATCAATCGT
66 AACACCAATACTTGGCTCATCCATCGC
* * * * * * * *
8226929 ATATGTAGTTGGATCAGCA-AACATTGTCGTTATTGCTCGATTCCATCACATATGAAGTTGGAAC
1 ATACGGAGTTGGATCAACATCACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTGGAAC
8226993 AACACCAATACTTGGCTCATCCATCGC
66 AACACCAATACTTGGCTCATCCATCGC
* *
8227020 ATACGGAGTTAGATCAACATCACATTGTCATTCTTGCTTGATTCCATCACATACGGAGTTGGAAC
1 ATACGGAGTTGGATCAACATCACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTGGAAC
* * **
8227085 AGCACCAATACTTGGCTCATTCATCAT
66 AACACCAATACTTGGCTCATCCATCGC
* * * *
8227112 ATACGAAGTTGGATCAACTTCATCAACATTGTCATTCTCGCTCGATT-CATCGCATATGGAGTTG
1 ATACGGAGTTGGATCAA---CATC-ACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTG
8227176 AATCAGTAAC
Statistics
Matches: 369, Mismatches: 55, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
91 77 0.21
92 230 0.62
93 6 0.02
94 1 0.00
95 19 0.05
96 36 0.10
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (92 bp):
ATACGGAGTTGGATCAACATCACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTGGAAC
AACACCAATACTTGGCTCATCCATCGC
Found at i:8227065 original size:183 final size:183
Alignment explanation
Indices: 8226649--8227129 Score: 606
Period size: 183 Copynumber: 2.6 Consensus size: 183
8226639 TATAAAATTT
*
8226649 ATACGGAGTTGGATCAGCATCATCAACATTGTCATTCTTTCTCGATTCCATCACATACGGAGTTG
1 ATACGGAGTTGGATCA--A-CATC-ACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTG
* * * *
8226714 GAACAACACCAATACTTGGCTCATCCATCGCATACGGAGTTGGATCAACATCACATTGACATTGT
62 GAACAACACCAATACTTGGCTCAT-CATCGTATACGAAGTTGGATCAACATAACATTGACATTAT
* * * * * * * *
8226779 TTCTTGATTTCATCACATACGGAGTTGGAGCATCACTAATGCATTGCTCATCCATCGC
126 TGCTCGATTCCATCACATACGAAGTTGGAACAACACCAATACATTGCTCATCCATCGC
* * * * *
8226837 ATATGGAGTTGGATCAGCATCACATTGTCATTCCTGCTCGATTCCATCATATACAGAGTTGGAAC
1 ATACGGAGTTGGATCAACATCACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTGGAAC
* * * * * * *
8226902 ATCACCAATGCTTGGCTCATCAATCGTATATGTAGTTGGATCAGCA-AACATTGTCGTTATTGCT
66 AACACCAATACTTGGCTCATC-ATCGTATACGAAGTTGGATCAACATAACATTGACATTATTGCT
*
8226966 CGATTCCATCACATATGAAGTTGGAACAACACCAATAC-TTGGCTCATCCATCGC
130 CGATTCCATCACATACGAAGTTGGAACAACACCAATACATT-GCTCATCCATCGC
* *
8227020 ATACGGAGTTAGATCAACATCACATTGTCATTCTTGCTTGATTCCATCACATACGGAGTTGGAAC
1 ATACGGAGTTGGATCAACATCACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTGGAAC
* *
8227085 AGCACCAATACTTGGCTCATTCATCATATACGAAGTTGGATCAAC
66 AACACCAATACTTGGCTCA-TCATCGTATACGAAGTTGGATCAAC
8227130 TTCATCAACA
Statistics
Matches: 252, Mismatches: 38, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
182 2 0.01
183 151 0.60
184 80 0.32
185 4 0.02
188 15 0.06
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (183 bp):
ATACGGAGTTGGATCAACATCACATTGTCATTCTTGCTCGATTCCATCACATACGGAGTTGGAAC
AACACCAATACTTGGCTCATCATCGTATACGAAGTTGGATCAACATAACATTGACATTATTGCTC
GATTCCATCACATACGAAGTTGGAACAACACCAATACATTGCTCATCCATCGC
Found at i:8230418 original size:2 final size:2
Alignment explanation
Indices: 8230406--8230580 Score: 75
Period size: 2 Copynumber: 94.5 Consensus size: 2
8230396 CTACATGTGC
* *
8230406 TA TA TA T- TA TA TA GTA TA T- TA TA GA TA TA TA TG T- TA TA T-
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8230445 TA TA T- TA AA T- TA TA T- TA TA TA T- TA GTA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* *
8230483 -A TA TA GTA TT TT TA TA T- TA TA TA TA TA GTA T- TA -A TA -A TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
8230522 TT TA TA -A TA TA TA TA T- TA TG TGA TA TA TA -A GTA -A TA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA -TA TA TA TA TA
*
8230562 TA -A TA T- TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA T
8230581 TTGTATTTAT
Statistics
Matches: 132, Mismatches: 15, Indels: 52
0.66 0.08 0.26
Matches are distributed among these distances:
1 20 0.15
2 102 0.77
3 10 0.08
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8230434 original size:25 final size:24
Alignment explanation
Indices: 8230406--8230540 Score: 94
Period size: 22 Copynumber: 5.9 Consensus size: 24
8230396 CTACATGTGC
8230406 TATATATTATATAGTATATTATAGA
1 TATATATTATATAGTATATTATA-A
*
8230431 TATATATGT-TATATTATATTA-AA
1 TATATAT-TATATAGTATATTATAA
*
8230454 T-TATATTATATA-T-TAGTAT-A
1 TATATATTATATAGTATATTATAA
* *
8230474 TATTATATAATATAGTAT-TT-TTA
1 TA-TATATTATATAGTATATTATAA
*
8230497 TAT-TATATATATAGTAT-TAATAA
1 TATATAT-TATATAGTATATTATAA
* *
8230520 TATTTATAATATA-TATATTAT
1 TATATATTATATAGTATATTAT
8230541 GTGATATATA
Statistics
Matches: 89, Mismatches: 9, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
20 6 0.07
21 5 0.06
22 34 0.38
23 20 0.22
24 5 0.06
25 18 0.20
26 1 0.01
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
TATATATTATATAGTATATTATAA
Found at i:8230447 original size:5 final size:5
Alignment explanation
Indices: 8230408--8230540 Score: 68
Period size: 5 Copynumber: 26.6 Consensus size: 5
8230398 ACATGTGCTA
* * *
8230408 TATAT TATAT AGTATAT TATA- GATAT ATATGT TATAT TATAT TAAAT
1 TATAT TATAT --TATAT TATAT TATAT -TATAT TATAT TATAT TATAT
*
8230455 TATAT TATA- TATTAGT ATATAT TATAT AATA- TAGTAT T-T-T TATAT
1 TATAT TATAT TA-TA-T -TATAT TATAT TATAT TA-TAT TATAT TATAT
* *
8230500 TATA- TATA- TAGTAT TA-AT AATAT T-TAT AATAT ATATAT TAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATAT -TATAT TAT
8230541 GTGATATATA
Statistics
Matches: 99, Mismatches: 12, Indels: 34
0.68 0.08 0.23
Matches are distributed among these distances:
3 2 0.02
4 20 0.20
5 57 0.58
6 11 0.11
7 7 0.07
8 2 0.02
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.53
Consensus pattern (5 bp):
TATAT
Found at i:8230486 original size:27 final size:25
Alignment explanation
Indices: 8230406--8230573 Score: 110
Period size: 27 Copynumber: 6.9 Consensus size: 25
8230396 CTACATGTGC
8230406 TATATATTATATAGTA-TATTATAGATA
1 TATATATTATATA-TATTA-TATA-ATA
* * *
8230433 TATATGTTATATTATATTAAATTATA
1 TATATATTATA-TATATTATATAATA
8230459 TTATATATTAGTATATATTATATAATA
1 -TATATATTA-TATATATTATATAATA
8230486 TAGTAT-TT-T-TATATTATAT-ATA
1 TA-TATATTATATATATTATATAATA
*
8230508 TA-GTATTA-ATAATATT-TATAATA
1 TATATATTATAT-ATATTATATAATA
* *
8230531 TATATATTATGTGATA-TATA-AGTA
1 TATATATTATAT-ATATTATATAATA
8230555 -ATAT-TTATA-ATATTATATA
1 TATATATTATATATATTATATA
8230574 TAAATATTTG
Statistics
Matches: 114, Mismatches: 12, Indels: 35
0.71 0.07 0.22
Matches are distributed among these distances:
20 4 0.04
21 6 0.05
22 14 0.12
23 24 0.21
24 10 0.09
25 6 0.05
26 7 0.06
27 37 0.32
28 6 0.05
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (25 bp):
TATATATTATATATATTATATAATA
Found at i:8246804 original size:17 final size:17
Alignment explanation
Indices: 8246779--8246812 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8246769 AATGAGATGA
*
8246779 AAATTAAATAAACAAAT
1 AAATAAAATAAACAAAT
*
8246796 AAATAAAATAAATAAAT
1 AAATAAAATAAACAAAT
8246813 TGGGATAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATAAAATAAACAAAT
Found at i:8257941 original size:19 final size:20
Alignment explanation
Indices: 8257914--8257951 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
8257904 TACTCACTAT
*
8257914 TGTATTACTTGCATCGATTG
1 TGTATTACTTGCATAGATTG
8257934 TGTA-TACTTGCATAGATT
1 TGTATTACTTGCATAGATT
8257952 TGCTTGCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (20 bp):
TGTATTACTTGCATAGATTG
Found at i:8269958 original size:38 final size:37
Alignment explanation
Indices: 8269873--8269972 Score: 139
Period size: 38 Copynumber: 2.6 Consensus size: 37
8269863 TTTCAAAAAT
8269873 ACCTCAGTATCGATACCCTCTGAGCATCGATATTGGA
1 ACCTCAGTATCGATACCCTCTGAGCATCGATATTGGA
* * *
8269910 ACCTTAAGTATCCATACCCTCTGAGTATCGATATTGGA
1 ACC-TCAGTATCGATACCCTCTGAGCATCGATATTGGA
8269948 ACCTCGAGTATCGATACTCCT-TGAG
1 ACCTC-AGTATCGATAC-CCTCTGAG
8269973 GGGGTATCGA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
37 4 0.07
38 48 0.87
39 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (37 bp):
ACCTCAGTATCGATACCCTCTGAGCATCGATATTGGA
Found at i:8272610 original size:20 final size:21
Alignment explanation
Indices: 8272585--8272632 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
8272575 TAAGTGCAAC
8272585 ATCGATACTC-G-GGGTCCAGT
1 ATCGATACTCAGAGGGT-CAGT
8272605 ATCGATACTCAGAGGGTCAGT
1 ATCGATACTCAGAGGGTCAGT
8272626 ATCGATA
1 ATCGATA
8272633 ATAAGGTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.38
21 12 0.46
22 4 0.15
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (21 bp):
ATCGATACTCAGAGGGTCAGT
Found at i:8274093 original size:20 final size:20
Alignment explanation
Indices: 8274070--8274114 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
8274060 ATATAAATGA
*
8274070 AAATAAAAATACAAATTAA-T
1 AAATAAAAATA-AAATAAAGT
8274090 AAATAAAAATAAAATAAAGT
1 AAATAAAAATAAAATAAAGT
8274110 AAATA
1 AAATA
8274115 GTTAAAATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (20 bp):
AAATAAAAATAAAATAAAGT
Found at i:8278553 original size:59 final size:60
Alignment explanation
Indices: 8278476--8278604 Score: 147
Period size: 59 Copynumber: 2.1 Consensus size: 60
8278466 AGTATTAAAT
*
8278476 TGAAATGTTAAAAAAGTTT-AGGGACCAATTTAGAAT-AAAGGTCATAGTTTAGGGATGAAAA
1 TGAAATGTT-AAAAAGTTTGA-AGACCAATTTAGAATGAAA-GTCATAGTTTAGGGATGAAAA
** * * *
8278537 TGAAATGTT-AAAAGTTTGAAGATGAATTTAGAATGATAGTCATAGTTTATGGATGAAAT
1 TGAAATGTTAAAAAGTTTGAAGACCAATTTAGAATGAAAGTCATAGTTTAGGGATGAAAA
*
8278596 TGGAATGTT
1 TGAAATGTT
8278605 TAATATTATA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
59 47 0.80
60 3 0.05
61 9 0.15
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (60 bp):
TGAAATGTTAAAAAGTTTGAAGACCAATTTAGAATGAAAGTCATAGTTTAGGGATGAAAA
Found at i:8280250 original size:60 final size:60
Alignment explanation
Indices: 8280169--8280309 Score: 160
Period size: 60 Copynumber: 2.4 Consensus size: 60
8280159 GCATCATATG
* * * * * *
8280169 TCCCTAAATTATTA-TTCTTATT-TTAAATTAATCTTTAAACTTTTGAATATTTCAATGACA
1 TCCCTAAACTATGACTT-TTATTCTT-AATTAATCCTCAAACTTTTAAATATTCCAATGACA
* **
8280229 TCCCTAAACTATGACTTTTATTCTTAATTAGTCCTCAAACTTTTAAATATTCCAATTTCA
1 TCCCTAAACTATGACTTTTATTCTTAATTAATCCTCAAACTTTTAAATATTCCAATGACA
*
8280289 ACCCTAAACTATGACTTTTAT
1 TCCCTAAACTATGACTTTTAT
8280310 CCTAAATCGG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
60 65 0.94
61 4 0.06
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.45
Consensus pattern (60 bp):
TCCCTAAACTATGACTTTTATTCTTAATTAATCCTCAAACTTTTAAATATTCCAATGACA
Found at i:8280345 original size:60 final size:60
Alignment explanation
Indices: 8280205--8280405 Score: 204
Period size: 60 Copynumber: 3.4 Consensus size: 60
8280195 ATTAATCTTT
** * * ** *
8280205 AAACTTTTGAATATTTCAATGACATCCCTAAACTATGACTTTTATTCTTAATTAGTCCTC
1 AAACTTTTGAATATTTCAATTTCAACCCTAAACTATGACTTTTATTCTAAATCGGTCCCC
* * *
8280265 AAACTTTTAAATATTCCAATTTCAACCCTAAACTATGACTTTTATCCTAAATCGGTCCCC
1 AAACTTTTGAATATTTCAATTTCAACCCTAAACTATGACTTTTATTCTAAATCGGTCCCC
** * * * * ** * * *
8280325 AAACTTTTGAGCATTTCAATTTCACCCCAAAATTATGTCCCTCATTCTAAAGCGATCCCC
1 AAACTTTTGAATATTTCAATTTCAACCCTAAACTATGACTTTTATTCTAAATCGGTCCCC
*
8280385 AAACTTTTGAATCTTTCAATT
1 AAACTTTTGAATATTTCAATT
8280406 CCATCCCCAA
Statistics
Matches: 114, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
60 114 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.37
Consensus pattern (60 bp):
AAACTTTTGAATATTTCAATTTCAACCCTAAACTATGACTTTTATTCTAAATCGGTCCCC
Found at i:8280726 original size:60 final size:60
Alignment explanation
Indices: 8280571--8280726 Score: 170
Period size: 60 Copynumber: 2.6 Consensus size: 60
8280561 AATTTTGGGG
* * * *
8280571 ACCAATTTAGAATGAAG-GTTATAACTTGAGGATGAAAATGAAATGGTTAAAAGTTTGAGG
1 ACCAATTTAGAAT-AAGAGTCATAATTTGAGGATGAAAATGAAATGGTTAAAAGTTTAAGA
* * * * * * * * *
8280631 ACTAAATTAGAATGATAGTCATAGTTTAAGAATGAAATTGAAATGTTTAAAAGTTTAAGA
1 ACCAATTTAGAATAAGAGTCATAATTTGAGGATGAAAATGAAATGGTTAAAAGTTTAAGA
*
8280691 ACCAATTTTGAATAAGAGTCATAATTTGAGGATGAA
1 ACCAATTTAGAATAAGAGTCATAATTTGAGGATGAA
8280727 TGATACAATT
Statistics
Matches: 74, Mismatches: 21, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
59 1 0.01
60 73 0.99
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (60 bp):
ACCAATTTAGAATAAGAGTCATAATTTGAGGATGAAAATGAAATGGTTAAAAGTTTAAGA
Found at i:8282544 original size:60 final size:53
Alignment explanation
Indices: 8282507--8282887 Score: 408
Period size: 53 Copynumber: 7.0 Consensus size: 53
8282497 TCAGTTAAAT
* *
8282507 GTCTAACTGTGCATATTGACATAAAGATGTCAATAATGCAAGTTAGATGAAAG
1 GTCTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAG
* * * * *
8282560 GCCTAACTGTGCATATTGGCATAAAGGTGACATTAATACAAGTTAGATGATCAGTTAAAT
1 GTCTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTT--A-GAT--G--AAAG
* *
8282620 GTCTAACTGTGCATATTGGCATAAAGGTGTTAATAATGCAAGTTAGACGAAAG
1 GTCTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAG
* * *
8282673 GCCTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGTAAGTTAGATGAAAG
1 GTCTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAG
**
8282726 GTCTAACTGTGCA-ATTGGCATAAAGGTACCAATAATGCAAGTTAGATGAAAG
1 GTCTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAG
* * * *
8282778 GCCTAACTGTGCAT-TAGGCAGAAAGGTGTCAATGATGCAAGTTAGATGAAATG
1 GTCTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAA-G
* * * * *
8282831 TTAAATGTCTAATTGTGCAT-TTGACAGAAAGGTGCCACTAATGCAAGTTAGATGAAA
1 ------GTCTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAA
8282888 AACAATGTAT
Statistics
Matches: 276, Mismatches: 37, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
52 79 0.29
53 102 0.37
55 2 0.01
56 3 0.01
57 2 0.01
58 2 0.01
59 44 0.16
60 42 0.15
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (53 bp):
GTCTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAG
Found at i:8282567 original size:53 final size:53
Alignment explanation
Indices: 8282509--8282828 Score: 410
Period size: 53 Copynumber: 5.9 Consensus size: 53
8282499 AGTTAAATGT
* *
8282509 CTAACTGTGCATATTGACATAAAGATGTCAATAATGCAAGTTAGATGAAAGGC
1 CTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAGGC
* * * * *
8282562 CTAACTGTGCATATTGGCATAAAGGTGACATTAATACAAGTTAGATGATCAGTTAAATGT
1 CTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTT--A-GAT--G--AAAGGC
* *
8282622 CTAACTGTGCATATTGGCATAAAGGTGTTAATAATGCAAGTTAGACGAAAGGC
1 CTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAGGC
* * *
8282675 CTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGTAAGTTAGATGAAAGGT
1 CTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAGGC
**
8282728 CTAACTGTGCA-ATTGGCATAAAGGTACCAATAATGCAAGTTAGATGAAAGGC
1 CTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAGGC
* * *
8282780 CTAACTGTGCAT-TAGGCAGAAAGGTGTCAATGATGCAAGTTAGATGAAA
1 CTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAA
8282829 TGTTAAATGT
Statistics
Matches: 230, Mismatches: 29, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
52 79 0.34
53 100 0.43
55 2 0.01
56 3 0.01
57 2 0.01
58 2 0.01
60 42 0.18
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.27
Consensus pattern (53 bp):
CTAACTGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAGGC
Found at i:8282592 original size:113 final size:113
Alignment explanation
Indices: 8282449--8282887 Score: 567
Period size: 113 Copynumber: 4.0 Consensus size: 113
8282439 AGTTAAATGT
* ** *
8282449 CTAACTGTGCATATTGGCATAAAAATGACATTAATGCAAGTTAGATGATCAGTTAAATGTCTAAC
1 CTAACTGTGCATATTGGCAGAAAGGTGACAATAATGCAAGTTAGATGATCAGTTAAATGTCTAAC
* *
8282514 TGTGCATATTGACATAAAGATGTCAATAATGCAAGTTAGATGAAAGGC
66 TGTGCATATTGACATAAAGGTGCCAATAATGCAAGTTAGATGAAAGGC
* * *
8282562 CTAACTGTGCATATTGGCATAAAGGTGACATTAATACAAGTTAGATGATCAGTTAAATGTCTAAC
1 CTAACTGTGCATATTGGCAGAAAGGTGACAATAATGCAAGTTAGATGATCAGTTAAATGTCTAAC
* ** *
8282627 TGTGCATATTGGCATAAAGGTGTTAATAATGCAAGTTAGACGAAAGGC
66 TGTGCATATTGACATAAAGGTGCCAATAATGCAAGTTAGATGAAAGGC
* * *
8282675 CTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGTAAGTT--A-GAT--G--AAAGGTCTAAC
1 CTAACTGTGCATATTGGCAGAAAGGTGACAATAATGCAAGTTAGATGATCAGTTAAATGTCTAAC
* *
8282733 TGTGCA-ATTGGCATAAAGGTACCAATAATGCAAGTTAGATGAAAGGC
66 TGTGCATATTGACATAAAGGTGCCAATAATGCAAGTTAGATGAAAGGC
* * * *
8282780 CTAACTGTGCAT-TAGGCAGAAAGGTGTCAATGATGCAAGTTAGATGA-AATGTTAAATGTCTAA
1 CTAACTGTGCATATTGGCAGAAAGGTGACAATAATGCAAGTTAGATGATCA-GTTAAATGTCTAA
* * *
8282843 TTGTGCAT-TTGACAGAAAGGTGCCACTAATGCAAGTTAGATGAAA
65 CTGTGCATATTGACATAAAGGTGCCAATAATGCAAGTTAGATGAAA
8282888 AACAATGTAT
Statistics
Matches: 291, Mismatches: 26, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
104 26 0.09
105 49 0.17
106 17 0.06
107 2 0.01
108 1 0.00
109 1 0.00
110 3 0.01
111 49 0.17
113 143 0.49
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (113 bp):
CTAACTGTGCATATTGGCAGAAAGGTGACAATAATGCAAGTTAGATGATCAGTTAAATGTCTAAC
TGTGCATATTGACATAAAGGTGCCAATAATGCAAGTTAGATGAAAGGC
Found at i:8282768 original size:52 final size:52
Alignment explanation
Indices: 8282620--8282887 Score: 304
Period size: 52 Copynumber: 5.0 Consensus size: 52
8282610 TCAGTTAAAT
* * *
8282620 GTCTAACTGTGCATATTGGCATAAAGGTGTTAATAATGCAAGTTAGACGAAAG
1 GTCTAACTGTGCA-ATTGGCAGAAAGGTGTCAATAATGCAAGTTAGATGAAAG
* *
8282673 GCCTAACTGTGCATATTGGCAGAAAGGTGTCAATAATGTAAGTTAGATGAAAG
1 GTCTAACTGTGCA-ATTGGCAGAAAGGTGTCAATAATGCAAGTTAGATGAAAG
* **
8282726 GTCTAACTGTGCAATTGGCATAAAGGTACCAATAATGCAAGTTAGATGAAAG
1 GTCTAACTGTGCAATTGGCAGAAAGGTGTCAATAATGCAAGTTAGATGAAAG
* *
8282778 GCCTAACTGTGC-ATTAGGCAGAAAGGTGTCAATGATGCAAGTTAGATGAAATG
1 GTCTAACTGTGCAATT-GGCAGAAAGGTGTCAATAATGCAAGTTAGATGAAA-G
* * * * *
8282831 TTAAATGTCTAATTGTGCATTTGACAGAAAGGTGCCACTAATGCAAGTTAGATGAAA
1 ------GTCTAACTGTGCAATTGGCAGAAAGGTGTCAATAATGCAAGTTAGATGAAA
8282888 AACAATGTAT
Statistics
Matches: 184, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
51 3 0.02
52 77 0.42
53 61 0.33
59 41 0.22
60 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (52 bp):
GTCTAACTGTGCAATTGGCAGAAAGGTGTCAATAATGCAAGTTAGATGAAAG
Found at i:8282778 original size:27 final size:26
Alignment explanation
Indices: 8282694--8282778 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
8282684 CATATTGGCA
* *
8282694 GAAAGGTGTCAATAATGTAAGTTAGAT
1 GAAAGGT-CCAATAATGCAAGTTAGAT
* * *
8282721 GAAAGGTCTAACT-GTGCAA-TTGGCAT
1 GAAAGGTCCAA-TAATGCAAGTTAG-AT
8282747 -AAAGGTACCAATAATGCAAGTTAGAT
1 GAAAGGT-CCAATAATGCAAGTTAGAT
8282773 GAAAGG
1 GAAAGG
8282779 CCTAACTGTG
Statistics
Matches: 44, Mismatches: 8, Indels: 12
0.69 0.12 0.19
Matches are distributed among these distances:
25 10 0.23
26 18 0.41
27 16 0.36
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.25
Consensus pattern (26 bp):
GAAAGGTCCAATAATGCAAGTTAGAT
Found at i:8284437 original size:20 final size:20
Alignment explanation
Indices: 8284412--8284469 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
8284402 CATATGTTAA
8284412 AGAATGCATCGATGCACTAT
1 AGAATGCATCGATGCACTAT
* *
8284432 AGAATGGATCGATGCACTGT
1 AGAATGCATCGATGCACTAT
*
8284452 AGAATGTATCGATGCACT
1 AGAATGCATCGATGCACT
8284470 TCAAGGGGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (20 bp):
AGAATGCATCGATGCACTAT
Found at i:8285053 original size:21 final size:21
Alignment explanation
Indices: 8285029--8285098 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
8285019 TGTGAACATG
8285029 TGAATTATATGAAAAGTGATA
1 TGAATTATATGAAAAGTGATA
* * *
8285050 TGAATTACATGAAAAGAAGCTA
1 TGAATTATATGAAAAG-TGATA
* *
8285072 TGAGCTTATATGAACAGGTGATA
1 TGA-ATTATATGAA-AAGTGATA
8285095 TGAA
1 TGAA
8285099 AGTGTATATG
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
21 15 0.41
22 6 0.16
23 14 0.38
24 2 0.05
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.29
Consensus pattern (21 bp):
TGAATTATATGAAAAGTGATA
Done.