Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 46 of 89
Found at i:10186174 original size:20 final size:20
Alignment explanation
Indices: 10186149--10186186 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10186139 CAATTAATTC
10186149 ATTGGTGCATCGATGCATGG
1 ATTGGTGCATCGATGCATGG
*
10186169 ATTGGTGCATCGGTGCAT
1 ATTGGTGCATCGATGCAT
10186187 CCCTTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
ATTGGTGCATCGATGCATGG
Found at i:10194282 original size:22 final size:21
Alignment explanation
Indices: 10194254--10194310 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
10194244 TGCATGGTAT
10194254 GTGCATCGATGCATCAAATGCG
1 GTGCATCGATGCATCAAAT-CG
* ** *
10194276 GTGCATCGGTGCAT-GGATTG
1 GTGCATCGATGCATCAAATCG
10194296 GTGCATCGATGCATC
1 GTGCATCGATGCATC
10194311 CCTTTGAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 14 0.48
21 2 0.07
22 13 0.45
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (21 bp):
GTGCATCGATGCATCAAATCG
Found at i:10194814 original size:137 final size:136
Alignment explanation
Indices: 10194564--10194910 Score: 435
Period size: 137 Copynumber: 2.5 Consensus size: 136
10194554 CAACACTACA
* *
10194564 TGATGAGGAGATGTAATCGGTGGATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCTTTA
1 TGATGAGGAGATATAGTCGGTGGATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCTTTA
* * *
10194629 AGGATAATAAAGATAACACGGTTCCTACGTGATAAGGAAGTCTAGCTATCTAAGGATTATGCAA-
66 AGGATAATAAAGATAACACGGTTCCTACGCGATAAGGAAATCTAGCTATCTAAGGATGA--CAAG
*
10194693 CTCCTATG
129 CTCCTAAG
* *
10194701 TGATGAGGAGATCTAGTCGGTGGATGACACAGTTCCTACGTGATGAGGACGGCTGGCCATCTTTA
1 TGATGAGGAGATATAGTCGGTGGATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCTTTA
* * * * * * * *
10194766 GGGATATTAGAGATGACATGGTTCCTATGCGATGAGGAAATCTGGCTATCTAAGGATGACAAGGC
66 AGGATAATAAAGATAACACGGTTCCTACGCGATAAGGAAATCTAGCTATCTAAGGATGACAA-GC
10194831 TCCTAAG
130 TCCTAAG
* * * * ** **
10194838 TGATGAGGAGATATGGTCGATGAATGACATGGTTCCTATTTGATGAGGACGTATGGCCATCTTTA
1 TGATGAGGAGATATAGTCGGTGGATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCTTTA
*
10194903 TGGATAAT
66 AGGATAAT
10194911 TTGTCTCAAG
Statistics
Matches: 181, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
135 3 0.02
137 178 0.98
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (136 bp):
TGATGAGGAGATATAGTCGGTGGATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCTTTA
AGGATAATAAAGATAACACGGTTCCTACGCGATAAGGAAATCTAGCTATCTAAGGATGACAAGCT
CCTAAG
Found at i:10194956 original size:36 final size:35
Alignment explanation
Indices: 10194908--10195155 Score: 96
Period size: 36 Copynumber: 7.4 Consensus size: 35
10194898 CTTTATGGAT
*
10194908 AATTTGTCTCAAGAGAAACTGTCTCAAGCGAGACAA
1 AATTTGTTTCAAGAGAAACTGTCTCAAG-GAGACAA
* ** * ****
10194944 AATTTGTTTCAAGGGAAACAATCTCAA--TGTTTT
1 AATTTGTTTCAAGAGAAACTGTCTCAAGGAGACAA
* *
10194977 TA-TT-TTTCAAGAGAAACTGTCTTAAGAGAGACAA
1 AATTTGTTTCAAGAGAAACTGTCTCAAG-GAGACAA
* ** * ****
10195011 AATTTGTTTCAAGGGAAACAATCTCAA--TGTTTT
1 AATTTGTTTCAAGAGAAACTGTCTCAAGGAGACAA
* *
10195044 TATCTG--TCAAGAGAAACTGTCTCAAGAGAGACAA
1 AATTTGTTTCAAGAGAAACTGTCTCAAG-GAGACAA
* **
10195078 AA-TTGTTTCAAGCGAAACAAT-TACAA-G-G----
1 AATTTGTTTCAAGAGAAACTGTCT-CAAGGAGACAA
* *
10195106 ATTTGTGTTTCAAGAGAAACGGTCTCAAGAGAGACAA
1 AATT-TGTTTCAAGAGAAACTGTCTCAAG-GAGACAA
10195143 AATTTGTTTCAAG
1 AATTTGTTTCAAG
10195156 TAAAACAATT
Statistics
Matches: 142, Mismatches: 49, Indels: 42
0.61 0.21 0.18
Matches are distributed among these distances:
28 1 0.01
29 1 0.01
30 18 0.13
31 34 0.24
32 4 0.03
33 11 0.08
34 5 0.04
35 16 0.11
36 49 0.35
37 3 0.02
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (35 bp):
AATTTGTTTCAAGAGAAACTGTCTCAAGGAGACAA
Found at i:10195024 original size:67 final size:67
Alignment explanation
Indices: 10194916--10195169 Score: 361
Period size: 67 Copynumber: 3.8 Consensus size: 67
10194906 ATAATTTGTC
* *
10194916 TCAAGAGAAACTGTCTCAAGCGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATGTTTTTATT
1 TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATGTTTTTATC
10194981 TT
66 TT
*
10194983 TCAAGAGAAACTGTCTTAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATGTTTTTATC
1 TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATGTTTTTATC
*
10195048 TG
66 TT
* ** *
10195050 TCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTGTTTCAAGCGAAACAAT-TACAA-GGATTTGT
1 TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCT-CAATGTTTTTAT
*
10195112 GTT
65 CTT
* ** *
10195115 TCAAGAGAAACGGTCTCAAGAGAGACAAAATTTGTTTCAAGTAAAACAATTTCAA
1 TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAA
10195170 AATCCGTGAA
Statistics
Matches: 170, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
65 36 0.21
66 41 0.24
67 93 0.55
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (67 bp):
TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATGTTTTTATC
TT
Found at i:10195155 original size:132 final size:134
Alignment explanation
Indices: 10194916--10195169 Score: 379
Period size: 132 Copynumber: 1.9 Consensus size: 134
10194906 ATAATTTGTC
* * ** *
10194916 TCAAGAGAAACTGTCTCAAGCGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATGTTTTTATT
1 TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGCGAAACAATCTCAATGGATTTATG
* * *
10194981 TTTCAAGAGAAACTGTCTTAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATGTTTTTA
66 TTTCAAGAGAAACGGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAATCTCAATGTTTTTA
10195046 TCTG
131 TCTG
*
10195050 TCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTGTTTCAAGCGAAACAAT-TACAA-GGATTTGT
1 TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGCGAAACAATCT-CAATGGATTTAT
* *
10195112 GTTTCAAGAGAAACGGTCTCAAGAGAGACAAAATTTGTTTCAAGTAAAACAATTTCAA
65 GTTTCAAGAGAAACGGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAATCTCAA
10195170 AATCCGTGAA
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
132 58 0.54
133 21 0.19
134 29 0.27
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (134 bp):
TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGCGAAACAATCTCAATGGATTTATG
TTTCAAGAGAAACGGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAATCTCAATGTTTTTA
TCTG
Found at i:10197798 original size:17 final size:17
Alignment explanation
Indices: 10197776--10197816 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
10197766 ACTTTTTTTC
10197776 TCTTTG-TTTTTCTTCTT
1 TCTTTGCTTTTTC-TCTT
10197793 TCTTTGCTTTTTCTCTT
1 TCTTTGCTTTTTCTCTT
10197810 TGCTTTG
1 T-CTTTG
10197817 ATTTGATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.00, C:0.20, G:0.10, T:0.71
Consensus pattern (17 bp):
TCTTTGCTTTTTCTCTT
Found at i:10201986 original size:127 final size:129
Alignment explanation
Indices: 10201849--10202108 Score: 409
Period size: 127 Copynumber: 2.0 Consensus size: 129
10201839 AAAGTTAACG
* * *
10201849 GTTAGCAGAGTCTGAACCATAATAATGTGGATCATACCCCAGATCTGGTCACCACAAGGTTAAAT
1 GTTAGCAGAGTCTGAACCATAATAATATGGATAATACCCCAGATCTGATCACCACAAGGTTAAAT
*
10201914 CGAATAATAG-A-AA-AAATAAATAAATAAACAATGGTTAGAGTGCAATAAAATAAAAGTCAGTA
66 CGAATAATAGAACAATAAATAAATAAATAAA-AATGGTTAAAGTGCAATAAAATAAAAGTCAGTA
* * * *
10201976 GTTAGCAGAGTCTGAACCATAATAATATGGATAATACTCCGGATCTGATTACCACAAGGTTGAAT
1 GTTAGCAGAGTCTGAACCATAATAATATGGATAATACCCCAGATCTGATCACCACAAGGTTAAAT
*
10202041 CGAATATTAGAACAATAAATAAATAAATAAAAATGGTTAAAGTGCAATAAAATAAAAGTCAGTA
66 CGAATAATAGAACAATAAATAAATAAATAAAAATGGTTAAAGTGCAATAAAATAAAAGTCAGTA
10202105 GTTA
1 GTTA
10202109 ACTTTAAATA
Statistics
Matches: 121, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
127 67 0.55
128 1 0.01
129 38 0.31
130 15 0.12
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.25
Consensus pattern (129 bp):
GTTAGCAGAGTCTGAACCATAATAATATGGATAATACCCCAGATCTGATCACCACAAGGTTAAAT
CGAATAATAGAACAATAAATAAATAAATAAAAATGGTTAAAGTGCAATAAAATAAAAGTCAGTA
Found at i:10209062 original size:18 final size:16
Alignment explanation
Indices: 10209030--10209065 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
10209020 TCTACTTCAT
10209030 TCATTTCTCTTCTTCC
1 TCATTTCTCTTCTTCC
10209046 TCATTTCATCATTCTTCC
1 TCATTTC-TC-TTCTTCC
10209064 TC
1 TC
10209066 TCTAAATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.11, C:0.36, G:0.00, T:0.53
Consensus pattern (16 bp):
TCATTTCTCTTCTTCC
Found at i:10210371 original size:44 final size:46
Alignment explanation
Indices: 10210240--10210384 Score: 181
Period size: 47 Copynumber: 3.2 Consensus size: 46
10210230 TATAAAATCC
* * * *
10210240 CTTACCATTT--ATCCCATAAGTTCGTAAGCTTATTTTACCAAAATA
1 CTTACCATTTAAATTCCATAA-CTCGTAAGCTTATTTTACCCATATA
* *
10210285 ATTACCATTTAAATTCCATAAGCTCGTAAGCTTATTCTACCCATATA
1 CTTACCATTTAAATTCCATAA-CTCGTAAGCTTATTTTACCCATATA
10210332 CTTACCATTTAAATTCCAT-A-TCGTAAGCTTATTTTACCCATATA
1 CTTACCATTTAAATTCCATAACTCGTAAGCTTATTTTACCCATATA
*
10210376 CTTGCCATT
1 CTTACCATT
10210385 ATTCAAAAAG
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
44 31 0.35
45 9 0.10
46 1 0.01
47 48 0.54
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (46 bp):
CTTACCATTTAAATTCCATAACTCGTAAGCTTATTTTACCCATATA
Found at i:10210400 original size:44 final size:45
Alignment explanation
Indices: 10210261--10210406 Score: 156
Period size: 44 Copynumber: 3.2 Consensus size: 45
10210251 TCCCATAAGT
* * * *
10210261 TCGTAAGCTTATTTTACCAAAATAATTACCATTTAAATTCCATAAGC
1 TCGTAAGCTTATTTTACCCATATACTTACCATTT-AATT-CAAAAGC
* * *
10210308 TCGTAAGCTTATTCTACCCATATACTTACCATTTAAATTCCATA--
1 TCGTAAGCTTATTTTACCCATATACTTACCATTT-AATTCAAAAGC
*
10210352 TCGTAAGCTTATTTTACCCATATACTTGCCA-TT-ATTCAAAAAGC
1 TCGTAAGCTTATTTTACCCATATACTTACCATTTAATTC-AAAAGC
10210396 TCGTAAGCTTA
1 TCGTAAGCTTA
10210407 ATTGTATGCT
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
41 4 0.05
42 2 0.02
43 2 0.02
44 40 0.47
46 2 0.02
47 35 0.41
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.37
Consensus pattern (45 bp):
TCGTAAGCTTATTTTACCCATATACTTACCATTTAATTCAAAAGC
Found at i:10210558 original size:40 final size:40
Alignment explanation
Indices: 10210514--10210595 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
10210504 ACCGTAGTGC
*
10210514 TACACATAAGGTCGTGGCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
10210554 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
10210594 TA
1 TA
10210596 AAACCTGCAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:10211825 original size:30 final size:30
Alignment explanation
Indices: 10211768--10211830 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
10211758 TCTTCATCAA
* * *
10211768 TTTTCCAAAATTTACGAATTTATCCCAAAC
1 TTTTCCAAAACTTACGAAATGATCCCAAAC
*
10211798 TTTT-CAAAACTTACGAAATGATCCCCAA-
1 TTTTCCAAAACTTACGAAATGATCCCAAAC
10211826 TTTTC
1 TTTTC
10211831 TAAGGCTTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
28 4 0.14
29 20 0.71
30 4 0.14
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.37
Consensus pattern (30 bp):
TTTTCCAAAACTTACGAAATGATCCCAAAC
Found at i:10214430 original size:103 final size:105
Alignment explanation
Indices: 10214316--10214518 Score: 295
Period size: 104 Copynumber: 2.0 Consensus size: 105
10214306 TCACCATTTA
* * * *
10214316 AATTTATTATTTAAATATATAAAAATTAATTAAGAATAAATAATA-TTTAATCATTATGAAA-CA
1 AATTTATTATTTAAATAAATAAAAATCAAATAAGAATAAATAATATTTTAATCATTA-AAAATCA
*
10214379 TTTAATCGGGGAAATGCTTTCTATCTTCCCTGTTCAGCATT
65 TTTAACCGGGGAAATGCTTTCTATCTTCCCTGTTCAGCATT
*
10214420 AATTT-TTATTTAAATAAATGAAAATCAAATAAGAATAAATAATATTTTAATCATTAAAAATCAT
1 AATTTATTATTTAAATAAATAAAAATCAAATAAGAATAAATAATATTTTAATCATTAAAAATCAT
* * *
10214484 TTAACCGGGGAAATGTTTTCTTTGTTCCCTGTTCA
66 TTAACCGGGGAAATGCTTTCTATCTTCCCTGTTCA
10214519 CCATCTCAAT
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
103 38 0.43
104 50 0.57
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (105 bp):
AATTTATTATTTAAATAAATAAAAATCAAATAAGAATAAATAATATTTTAATCATTAAAAATCAT
TTAACCGGGGAAATGCTTTCTATCTTCCCTGTTCAGCATT
Found at i:10223783 original size:17 final size:17
Alignment explanation
Indices: 10223763--10223810 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
10223753 AGAAAGCTTA
10223763 AAGAGAAGGAAAAGTGC
1 AAGAGAAGGAAAAGTGC
*
10223780 AAGAGAAGGAAAACTGC
1 AAGAGAAGGAAAAGTGC
10223797 AAGAGAAGGAAAAG
1 AAGAGAAGGAAAAG
10223811 CTTAATGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.56, C:0.06, G:0.33, T:0.04
Consensus pattern (17 bp):
AAGAGAAGGAAAAGTGC
Found at i:10230504 original size:26 final size:26
Alignment explanation
Indices: 10230428--10230507 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
10230418 ACTAAGTGCA
* *
10230428 TATGGTGGGAACGACCTTATGTATAT
1 TATGGTGGGCACGACCTTATGTGTAT
*
10230454 TATAGTGGGCACGACCTTATGTGTAT
1 TATGGTGGGCACGACCTTATGTGTAT
* *
10230480 TATGGTGGGCACGCCCTTATTTGTAT
1 TATGGTGGGCACGACCTTATGTGTAT
10230506 TA
1 TA
10230508 GCACTTCGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (26 bp):
TATGGTGGGCACGACCTTATGTGTAT
Found at i:10251686 original size:15 final size:15
Alignment explanation
Indices: 10251648--10251686 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
10251638 AATATATTTT
*
10251648 AAAATAATTTTAAGG
1 AAAATAATTTTAAAG
10251663 AAAATAATTTTAAAAG
1 AAAATAATTTT-AAAG
10251679 AAAA-AATT
1 AAAATAATT
10251687 GATATGCGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (15 bp):
AAAATAATTTTAAAG
Found at i:10252138 original size:16 final size:15
Alignment explanation
Indices: 10252113--10252146 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
10252103 TAAATAAACC
*
10252113 ATTAATAATATTTAAA
1 ATTAAAAATA-TTAAA
10252129 ATTAAAAATATTAAA
1 ATTAAAAATATTAAA
10252144 ATT
1 ATT
10252147 TGAGGATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTAAAAATATTAAA
Found at i:10253571 original size:55 final size:52
Alignment explanation
Indices: 10253499--10253890 Score: 198
Period size: 55 Copynumber: 7.6 Consensus size: 52
10253489 TGGAAAACAA
* *
10253499 GTCTGGTCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTGAAAATG
1 GTCTGCTCAACTCTTCTTTCAGGGAGATAAGACTC-AGAAATC-TTTGAAAATG
* * * * ** *
10253553 TGTCTTCTCTACTCTTCTTTCATGGAGATAAGA-TC--CAA---GGGAAGATG
1 -GTCTGCTCAACTCTTCTTTCAGGGAGATAAGACTCAGAAATCTTTGAAAATG
* *
10253600 AATATGCTCAACTCTTCTTTCAGGGAGATAAGACTCAAGAAATCTTTGTAAAATG
1 -GTCTGCTCAACTCTTCTTTCAGGGAGATAAGACTC-AGAAATCTTTG-AAAATG
* * * * *
10253655 GATCTGCTCCACTCTTCTTTCAGGGAGATAAGA-T-A-CAA---TGGAAGACG
1 G-TCTGCTCAACTCTTCTTTCAGGGAGATAAGACTCAGAAATCTTTGAAAATG
* * * * *
10253702 AATCTACTCCACTCTTCTTTCAGGGAGATAAGATTCAAGAAATATTTGGAAAATG
1 -GTCTGCTCAACTCTTCTTTCAGGGAGATAAGACTC-AGAAATCTTT-GAAAATG
* * * * *
10253757 GATATACTCCACTCTTCTTTCAGGGAGATAAAAC-CAAGGGAAGA-C---GAATAT-
1 G-TCTGCTCAACTCTTCTTTCAGGGAGATAAGACTC-A--GAA-ATCTTTGAAAATG
10253808 G-CT-C-C-ACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTGGAAAATG
1 GTCTGCTCAACTCTTCTTTCAGGGAGATAAGACTC-AGAAATCTTT-GAAAATG
* * **
10253858 GATATTCTCCTCTCTTCTTTCAGGGAGATAAGA
1 G-TCTGCTCAACTCTTCTTTCAGGGAGATAAGA
10253891 TCCAAGGGAA
Statistics
Matches: 260, Mismatches: 43, Indels: 68
0.70 0.12 0.18
Matches are distributed among these distances:
44 1 0.00
45 4 0.02
46 23 0.09
47 70 0.27
48 6 0.02
49 6 0.02
50 2 0.01
51 9 0.03
52 7 0.03
53 1 0.00
54 9 0.03
55 118 0.45
56 3 0.01
57 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (52 bp):
GTCTGCTCAACTCTTCTTTCAGGGAGATAAGACTCAGAAATCTTTGAAAATG
Found at i:10253632 original size:47 final size:47
Alignment explanation
Indices: 10253563--10254142 Score: 274
Period size: 55 Copynumber: 11.5 Consensus size: 47
10253553 TGTCTTCTCT
* *
10253563 ACTCTTCTTTCATGGAGATAAGATCCAAGGGAAGATGAATATGCTCA
1 ACTCTTCTTTCAGGGAGATAAGATCCAAGGGAAGATGAATATGCTCC
* * * *
10253610 ACTCTTCTTTCAGGGAGATAAGA-CTCAAGAAATCTTTGTAAAATGGATCTGCTCC
1 ACTCTTCTTTCAGGGAGATAAGATC-CAAG--------GGAAGATGAATATGCTCC
* * * * *
10253665 ACTCTTCTTTCAGGGAGATAAGATACAATGGAAGACGAATCTACTCC
1 ACTCTTCTTTCAGGGAGATAAGATCCAAGGGAAGATGAATATGCTCC
* * * *
10253712 ACTCTTCTTTCAGGGAGATAAGATTCAAGAAATATTTGGAAAATGGATATACTCC
1 ACTCTTCTTTCAGGGAGATAAGATCCAAG--------GGAAGATGAATATGCTCC
* *
10253767 ACTCTTCTTTCAGGGAGATAA-AACCAAGGGAAGACGAATATGCTCC
1 ACTCTTCTTTCAGGGAGATAAGATCCAAGGGAAGATGAATATGCTCC
* * * * *
10253813 ACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTGGAAAATGGATATTCTCC
1 ACTCTTCTTTCAGGGAGATAAGA-TC---CAA----GGGAAGATGAATATGCTCC
* * * *
10253868 TCTCTTCTTTCAGGGAGATAAGATCCAAGGGAAGACGGATCTGCTCC
1 ACTCTTCTTTCAGGGAGATAAGATCCAAGGGAAGATGAATATGCTCC
* * * * * * * * * * * *
10253915 AATATTATTCCATGGAGATAAGACTCGAGAAATCTTTGTAAAATGGATCTACTCC
1 ACTCTTCTTTCAGGGAGATAAGA-TC---CAA----GGGAAGATGAATATGCTCC
* *
10253970 ACTCTT-TATTCAGGGAGATAAGATCCAAGGGAAGACT-AATCTGTTCC
1 ACTCTTCT-TTCAGGGAGATAAGATCCAAGGGAAGA-TGAATATGCTCC
* * * *
10254017 ACTATTCTTTCAGGGAGATAATA-CTCAA-GAAATATTTAGAAAACGGATATGCTCC
1 ACTCTTCTTTCAGGGAGATAAGATC-CAAGGGAAGA--T-G---A---ATATGCTCC
* *
10254072 TCTCTT-TTTCCAGGGAGATAAGATCCAAGGGAAGACGAATATGCTCC
1 ACTCTTCTTT-CAGGGAGATAAGATCCAAGGGAAGATGAATATGCTCC
*
10254119 ACTCTTTTTTCAGGGAGATAAGAT
1 ACTCTTCTTTCAGGGAGATAAGAT
10254143 TCGAGAAATC
Statistics
Matches: 405, Mismatches: 76, Indels: 104
0.69 0.13 0.18
Matches are distributed among these distances:
46 41 0.10
47 160 0.40
48 8 0.02
50 1 0.00
51 8 0.02
52 1 0.00
53 1 0.00
54 13 0.03
55 167 0.41
56 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (47 bp):
ACTCTTCTTTCAGGGAGATAAGATCCAAGGGAAGATGAATATGCTCC
Found at i:10253641 original size:102 final size:102
Alignment explanation
Indices: 10253505--10254191 Score: 839
Period size: 102 Copynumber: 6.7 Consensus size: 102
10253495 ACAAGTCTGG
* * *
10253505 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTGAAAATGTG-TCTTCTCTACTCTT
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTGAAAATG-GATATACTCCACTCTT
* *
10253569 CTTTCATGGAGATAAGATCCAAGGGAAGATGAATATGC
65 CTTTCAGGGAGATAAGATCCAAGGGAAGACGAATATGC
* * * *
10253607 TCAACTCTTCTTTCAGGGAGATAAGACTCAAGAAATC-TTTGTAAAATGGATCTGCTCCACTCTT
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTG-AAAATGGATATACTCCACTCTT
* * * *
10253671 CTTTCAGGGAGATAAGATACAATGGAAGACGAATCTAC
65 CTTTCAGGGAGATAAGATCCAAGGGAAGACGAATATGC
* * * *
10253709 TCCACTCTTCTTTCAGGGAGATAAGATTCAAGAAATATTTGGAAAATGGATATACTCCACTCTTC
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTGAAAATGGATATACTCCACTCTTC
*
10253774 TTTCAGGGAGATAA-AACCAAGGGAAGACGAATATGC
66 TTTCAGGGAGATAAGATCCAAGGGAAGACGAATATGC
* * *
10253810 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTGGAAAATGGATATTCTCCTCTCTTC
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTGAAAATGGATATACTCCACTCTTC
* *
10253875 TTTCAGGGAGATAAGATCCAAGGGAAGACGGATCTGC
66 TTTCAGGGAGATAAGATCCAAGGGAAGACGAATATGC
* * * * * *
10253912 TCCAATATTATTCCATGGAGATAAGACTCGAGAAATC-TTTGTAAAATGGATCTACTCCACTCTT
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTG-AAAATGGATATACTCCACTCTT
* * *
10253976 -TATTCAGGGAGATAAGATCCAAGGGAAGACTAATCTGT
65 CT-TTCAGGGAGATAAGATCCAAGGGAAGACGAATATGC
* * * * * * * *
10254014 TCCACTATTCTTTCAGGGAGATAATACTCAAGAAATATTTAGAAAACGGATATGCTCCTCTCTT-
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTGAAAATGGATATACTCCACTCTTC
10254078 TTTCCAGGGAGATAAGATCCAAGGGAAGACGAATATGC
66 TTT-CAGGGAGATAAGATCCAAGGGAAGACGAATATGC
* * * * * * *
10254116 TCCACTCTTTTTTCAGGGAGATAAGATTCGAGAAATC-TTTGTAAAACGAATCTCCACCACTCTT
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTG-AAAATGGATATACTCCACTCTT
*
10254180 CTTTTAGGGAGA
65 CTTTCAGGGAGA
10254192 CCAAATCTGA
Statistics
Matches: 506, Mismatches: 69, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
101 105 0.21
102 392 0.77
103 9 0.02
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (102 bp):
TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTGAAAATGGATATACTCCACTCTTC
TTTCAGGGAGATAAGATCCAAGGGAAGACGAATATGC
Found at i:10253830 original size:46 final size:46
Alignment explanation
Indices: 10253661--10253835 Score: 181
Period size: 46 Copynumber: 3.6 Consensus size: 46
10253651 AATGGATCTG
* *
10253661 CTCCACTCTTCTTTCAGGGAGATAAGATACAATGGAAGACGAATCTA
1 CTCCACTCTTCTTTCAGGGAGATAAGA-ACAAGGGAAGACGAATATA
* * * *
10253708 CTCCACTCTTCTTTCAGGGAGATAAGATTCAAGAAATATTTGGAAAATGGATATA
1 CTCCACTCTTCTTTCAGGGAGATAAGA-ACAAG--------GGAAGACGAATATA
*
10253763 CTCCACTCTTCTTTCAGGGAGATAA-AACCAAGGGAAGACGAATATG
1 CTCCACTCTTCTTTCAGGGAGATAAGAA-CAAGGGAAGACGAATATA
10253809 CTCCACTCTTCTTTCAGGGAGATAAGA
1 CTCCACTCTTCTTTCAGGGAGATAAGA
10253836 CTCGAGAAAT
Statistics
Matches: 107, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
46 35 0.33
47 32 0.30
54 5 0.05
55 35 0.33
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (46 bp):
CTCCACTCTTCTTTCAGGGAGATAAGAACAAGGGAAGACGAATATA
Found at i:10254088 original size:305 final size:306
Alignment explanation
Indices: 10253505--10254161 Score: 975
Period size: 305 Copynumber: 2.2 Consensus size: 306
10253495 ACAAGTCTGG
* *
10253505 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTTGAAAATGTGTCTTCTCTACTCTTC
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTGGAAAATGTGTATTCTCTACTCTTC
* * * * *
10253570 TTTCATGGAGATAAGATCCAAGGGAAGATGAATATGCTCAACTCTTCTTTCAGGGAGATAAGACT
66 TTTCAGGGAGATAAGATCCAAGGGAAGACGAATATGCTCAACTATTATTCCAGGGAGATAAGACT
* *
10253635 CAAGAAATCTTTGTAAAATGGATCTGCTCCACTCTTCTTTCAGGGAGATAAGATACAATGGAAGA
131 CAAGAAATCTTTGTAAAATGGATCTACTCCACTCTTCTTTCAGGGAGATAAGATACAAGGGAAGA
* * * *
10253700 CGAATCTACTCCACTCTTCTTTCAGGGAGATAAGATTCAAGAAATATTTGGAAAATGGATATACT
196 CGAATCTACTCCACTATTCTTTCAGGGAGATAAGACTCAAGAAATATTTAGAAAACGGATATACT
10253765 CCACTCTTCTTTCAGGGAGATAA-AACCAAGGGAAGACGAATATGC
261 CCACTCTTCTTTCAGGGAGATAAGAACCAAGGGAAGACGAATATGC
10253810 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTGGAAAATG-GATATTCTCCT-CTCT
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTGGAAAATGTG-TATTCT-CTACTCT
* * *
10253873 TCTTTCAGGGAGATAAGATCCAAGGGAAGACGGATCTGCTCCAA-TATTATTCCATGGAGATAAG
64 TCTTTCAGGGAGATAAGATCCAAGGGAAGACGAATATGCT-CAACTATTATTCCAGGGAGATAAG
* *
10253937 ACTCGAGAAATCTTTGTAAAATGGATCTACTCCACTCTT-TATTCAGGGAGATAAGATCCAAGGG
128 ACTCAAGAAATCTTTGTAAAATGGATCTACTCCACTCTTCT-TTCAGGGAGATAAGATACAAGGG
* ** *
10254001 AAGACTAATCTGTTCCACTATTCTTTCAGGGAGATAATACTCAAGAAATATTTAGAAAACGGATA
192 AAGACGAATCTACTCCACTATTCTTTCAGGGAGATAAGACTCAAGAAATATTTAGAAAACGGATA
* * *
10254066 TGCTCCTCTCTT-TTTCCAGGGAGATAAGATCCAAGGGAAGACGAATATGC
257 TACTCCACTCTTCTTT-CAGGGAGATAAGAACCAAGGGAAGACGAATATGC
* * *
10254116 TCCACTCTTTTTTCAGGGAGATAAGATTCGAGAAATCTTTGTAAAA
1 TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTGGAAAA
10254162 CGAATCTCCA
Statistics
Matches: 318, Mismatches: 28, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
304 5 0.02
305 244 0.77
306 69 0.22
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (306 bp):
TCCACTCTTCTTTCAGGGAGATAAGACTCGAGAAATCTTTGGAAAATGTGTATTCTCTACTCTTC
TTTCAGGGAGATAAGATCCAAGGGAAGACGAATATGCTCAACTATTATTCCAGGGAGATAAGACT
CAAGAAATCTTTGTAAAATGGATCTACTCCACTCTTCTTTCAGGGAGATAAGATACAAGGGAAGA
CGAATCTACTCCACTATTCTTTCAGGGAGATAAGACTCAAGAAATATTTAGAAAACGGATATACT
CCACTCTTCTTTCAGGGAGATAAGAACCAAGGGAAGACGAATATGC
Found at i:10254270 original size:43 final size:42
Alignment explanation
Indices: 10254212--10254372 Score: 117
Period size: 47 Copynumber: 3.6 Consensus size: 42
10254202 AATAAGAGGA
* * *
10254212 ATTTGTTCCATTACTCTTCCGTGGAGATCAGACTCGAGATTG
1 ATTTGTTCCACTACTCTTCCGGGGAGATCAGACTCGAAATTG
* * * * *
10254254 ATTTGTTTCCACTACTCTTTCGGGGAGACCA-AATATGAAATAAGAAG
1 ATTTG-TTCCACTACTCTTCCGGGGAGATCAGACT-CGAAAT----TG
* *
10254301 AATCTGTTCCACTACTCTTCCGTGGAGATCAGACTCGAAATTG
1 -ATTTGTTCCACTACTCTTCCGGGGAGATCAGACTCGAAATTG
** *
10254344 ATTTGCTTTTTACTACTCCTCCGGGGAGA
1 ATTTG--TTCCACTACTCTTCCGGGGAGA
10254373 CCAAATTATA
Statistics
Matches: 89, Mismatches: 20, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
42 11 0.12
43 26 0.29
44 18 0.20
47 28 0.31
48 6 0.07
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (42 bp):
ATTTGTTCCACTACTCTTCCGGGGAGATCAGACTCGAAATTG
Found at i:10254324 original size:90 final size:90
Alignment explanation
Indices: 10254186--10254695 Score: 612
Period size: 90 Copynumber: 5.7 Consensus size: 90
10254176 TCTTCTTTTA
* * * *
10254186 GGGAGACCAAATCTGAAATAAGAGGAATTTGTTCCATTACTCTTCCGTGGAGATCAGACTCGAGA
1 GGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTACTCTTCCGTGGAGATCAGACTCGAGA
10254251 TTGATTTGTTTCCACTACTCTTTCG
66 TTGATTTGTTTCCACTACTCTTTCG
*
10254276 GGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTACTCTTCCGTGGAGATCAGACTCGAAA
1 GGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTACTCTTCCGTGGAGATCAGACTCGAGA
** * *
10254341 TTGATTTGCTTTTTACTACTCCTCCG
66 TTGATTTG-TTTCCACTACTCTTTCG
* * * * * * *
10254367 GGGAGACCAAATTAT-AAATAAGGAGAATTTTTTCCACTACCCTTCCGTGGAGATGAAACTCGAT
1 GGGAGACCAAA-TATGAAATAAGAAGAATCTGTTCCACTACTCTTCCGTGGAGATCAGACTCGAG
** *
10254431 ATTGATTTCCTTCCACTACTTTTTCG
65 ATTGATTTGTTTCCACTACTCTTTCG
* * * * * *
10254457 GGGAGACCAAATATGAAATAAGGAGAATCTATTCCACTACTCTTTCATGGAGATTAGACTAGAGA
1 GGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTACTCTTCCGTGGAGATCAGACTCGAGA
*
10254522 TTGATTT-CTTCCACTACTCTTTCG
66 TTGATTTGTTTCCACTACTCTTTCG
* * * * * *
10254546 GGGAGACCAAATATGAAATAAGGAGAATCTGTTCAACAACCCTTCCGTGGGGATCACACTCGAGA
1 GGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTACTCTTCCGTGGAGATCAGACTCGAGA
*
10254611 TTGATTTGTTTCTACTACTC-TTCTG
66 TTGATTTGTTTCCACTACTCTTTC-G
* * * ** * *
10254636 GGGAGACCAAATCTAAAATAAGAAGAATATGTTCCACTACAATGCTGTGGAGATCAGACT
1 GGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTACTCTTCCGTGGAGATCAGACT
10254696 TGAAATAAGA
Statistics
Matches: 358, Mismatches: 57, Indels: 10
0.84 0.13 0.02
Matches are distributed among these distances:
89 84 0.23
90 197 0.55
91 74 0.21
92 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (90 bp):
GGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTACTCTTCCGTGGAGATCAGACTCGAGA
TTGATTTGTTTCCACTACTCTTTCG
Found at i:10254642 original size:179 final size:181
Alignment explanation
Indices: 10254186--10254675 Score: 648
Period size: 181 Copynumber: 2.7 Consensus size: 181
10254176 TCTTCTTTTA
* * * *
10254186 GGGAGACCAAATCTGAAATAA-GAGGAATTTGTTCCATTACTCTTCCGTGGAGATCAGACTCGAG
1 GGGAGACCAAATATGAAATAAGGA-GAATTTGTTCCACTACCCTTCCGTGGAGATCAAACTCGAG
10254250 ATTGATTTGTTTCCACTACTCTTTCGGGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTA
65 ATTGATTTGTTTCCACTACTCTTTCGGGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTA
* * **
10254315 CTCTTCCGTGGAGATCAGACTCGAAATTGATTTGCTTTTTACTACTCCTCCG
130 CTCTTCCATGGAGATCAGACTAGAAATTGATTTGCTTTCCACTACTCCTCCG
* * *
10254367 GGGAGACCAAATTAT-AAATAAGGAGAATTTTTTCCACTACCCTTCCGTGGAGATGAAACTCGAT
1 GGGAGACCAAA-TATGAAATAAGGAGAATTTGTTCCACTACCCTTCCGTGGAGATCAAACTCGAG
** * * *
10254431 ATTGATTTCCTTCCACTACTTTTTCGGGGAGACCAAATATGAAATAAGGAGAATCTATTCCACTA
65 ATTGATTTGTTTCCACTACTCTTTCGGGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTA
* * * * *
10254496 CTCTTTCATGGAGATTAGACTAGAGATTGATTT-C-TTCCACTACTCTTTCG
130 CTCTTCCATGGAGATCAGACTAGAAATTGATTTGCTTTCCACTACTCCTCCG
* * * * *
10254546 GGGAGACCAAATATGAAATAAGGAGAATCTGTTCAACAACCCTTCCGTGGGGATCACACTCGAGA
1 GGGAGACCAAATATGAAATAAGGAGAATTTGTTCCACTACCCTTCCGTGGAGATCAAACTCGAGA
* * * *
10254611 TTGATTTGTTTCTACTACTC-TTCTGGGGAGACCAAATCTAAAATAAGAAGAATATGTTCCACTA
66 TTGATTTGTTTCCACTACTCTTTC-GGGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTA
10254675 C
130 C
10254676 AATGCTGTGG
Statistics
Matches: 267, Mismatches: 38, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
178 6 0.02
179 117 0.44
180 1 0.00
181 139 0.52
182 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (181 bp):
GGGAGACCAAATATGAAATAAGGAGAATTTGTTCCACTACCCTTCCGTGGAGATCAAACTCGAGA
TTGATTTGTTTCCACTACTCTTTCGGGGAGACCAAATATGAAATAAGAAGAATCTGTTCCACTAC
TCTTCCATGGAGATCAGACTAGAAATTGATTTGCTTTCCACTACTCCTCCG
Found at i:10254702 original size:47 final size:47
Alignment explanation
Indices: 10254651--10254742 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 47
10254641 ACCAAATCTA
*
10254651 AAATAAGAAGAATATGTTCCACTACAATGCTGTGGAGATCAGACTTG
1 AAATAAGAAGAATATGTTCCACTACAATGCTGGGGAGATCAGACTTG
* ** *
10254698 AAATAAGAAGAATATGTTCTACTACTCTTCTGGGGAGATCAGACT
1 AAATAAGAAGAATATGTTCCACTACAATGCTGGGGAGATCAGACT
10254743 CGAGATTGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (47 bp):
AAATAAGAAGAATATGTTCCACTACAATGCTGGGGAGATCAGACTTG
Found at i:10254738 original size:137 final size:137
Alignment explanation
Indices: 10254559--10254828 Score: 373
Period size: 137 Copynumber: 2.0 Consensus size: 137
10254549 AGACCAAATA
* * *
10254559 TGAAATAAGGAGAATCTGTTCAACAACCCTTCCGTGGGGATCACACTCGAGATTGATTTG-TTTC
1 TGAAATAAGAAGAATATGTTCAACAACCCTTCCGTGGGGATCACACTCGAGATTGATTTGCTTAC
* ** *
10254623 TACTACTCTTCTGGGGAGACCAAATCTAAAATAAGAAGAATATGTTCCACTACAATGCTGTGGAG
66 -ACTAATCTTCCAGGGAGACCAAATCTAAAATAAGAAGAATATGTTCCACTACAATGCCGTGGAG
10254688 ATCAGACT
130 ATCAGACT
* * * * *
10254696 TGAAATAAGAAGAATATGTTCTACTACTCTTCTG-GGGAGATCAGACTCGAGATTGATTTGCTTA
1 TGAAATAAGAAGAATATGTTCAACAACCCTTCCGTGGG-GATCACACTCGAGATTGATTTGCTTA
* * *
10254760 CACTAATCTTCCATGGAGACCAAATCTAAAATAAGAAGAATATGTTCCACTACTATTCCGTGGAG
65 CACTAATCTTCCAGGGAGACCAAATCTAAAATAAGAAGAATATGTTCCACTACAATGCCGTGGAG
10254825 ATCA
130 ATCA
10254829 CACTCGAGAT
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
136 3 0.03
137 110 0.95
138 3 0.03
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (137 bp):
TGAAATAAGAAGAATATGTTCAACAACCCTTCCGTGGGGATCACACTCGAGATTGATTTGCTTAC
ACTAATCTTCCAGGGAGACCAAATCTAAAATAAGAAGAATATGTTCCACTACAATGCCGTGGAGA
TCAGACT
Found at i:10254798 original size:90 final size:89
Alignment explanation
Indices: 10254696--10255141 Score: 520
Period size: 90 Copynumber: 5.0 Consensus size: 89
10254686 AGATCAGACT
* *
10254696 TGAAATAAGAAGAATATGTTCTACTACTCTTCTGGGGAGATCAGACTCGAGATTGATTTGCTTAC
1 TGAAATAAGAAGAATATGTTCTACTACTCTTCCGTGGAGATCAGACTCGAGATTGATTTGCTT-C
* ** *
10254761 ACTAATCTTCCATGGAGACCAAATC
65 ACTACTCTTCCGGGGAGACCAAATA
* * * *
10254786 TAAAATAAGAAGAATATGTTCCACTACTATTCCGTGGAGATCACACTCGAGATTGATTTGCTTCA
1 TGAAATAAGAAGAATATGTTCTACTACTCTTCCGTGGAGATCAGACTCGAGATTGATTTGCTTCA
* * *
10254851 CTACTCTTCTGTGGAGACCAAATC
66 CTACTCTTCCGGGGAGACCAAATA
* * * * ** * *
10254875 TGAAATAAGAATAATATGTT-AAATACTCTTCTGTACAGATCATACTCGAGATTGATTTCCTTCT
1 TGAAATAAGAAGAATATGTTCTACTACTCTTCCGTGGAGATCAGACTCGAGATTGATTTGCTTC-
10254939 ACTACTCTT-CGGGGAAGACCAAATA
65 ACTACTCTTCCGGGG-AGACCAAATA
* * *
10254964 TGAAATAAGAAGAATATGTTCTACTACTCTTCCATGGAGATCAGACTCTATATTGATTTGCTTCC
1 TGAAATAAGAAGAATATGTTCTACTACTCTTCCGTGGAGATCAGACTCGAGATTGATTTGCTT-C
* **
10255029 ATTACTCTTTTGGGGAGACCAAATA
65 ACTACTCTTCCGGGGAGACCAAATA
* * * *
10255054 TGAAATAAGGAA-AATTTGTTCTACTATTCTTCCGTGGAGATCAGACTTGAGATTGATTTGCTTT
1 TGAAATAA-GAAGAATATGTTCTACTACTCTTCCGTGGAGATCAGACTCGAGATTGATTTGCTTC
* * *
10255118 GCTACTCTTTCGGGAAGACCAAAT
65 ACTACTCTTCCGGGGAGACCAAAT
10255142 CTAACATGTT
Statistics
Matches: 304, Mismatches: 46, Indels: 13
0.84 0.13 0.04
Matches are distributed among these distances:
88 38 0.12
89 98 0.32
90 160 0.53
91 8 0.03
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (89 bp):
TGAAATAAGAAGAATATGTTCTACTACTCTTCCGTGGAGATCAGACTCGAGATTGATTTGCTTCA
CTACTCTTCCGGGGAGACCAAATA
Found at i:10254859 original size:226 final size:226
Alignment explanation
Indices: 10254470--10254894 Score: 586
Period size: 226 Copynumber: 1.9 Consensus size: 226
10254460 AGACCAAATA
* * * *
10254470 TGAAATAAGGAGAATCTATTCCACTACTCTTTCATGGAGATTAGACTAGAGATTGATTTCTTCCA
1 TGAAATAAGAAGAATATATTCCACTACTCTTTCATGGAGATCAGACTAGAGATTGATTTCTTACA
* * * * * * * *
10254535 CTACTCTTTCGGGGAGACCAAATATGAAATAAGGAGAATCTGTTCAACAACCCTTCCGTGGGGAT
66 CTAATCTTCCAGGGAGACCAAATATAAAATAAGAAGAATATGTTCAACAACCATTCCGTGGAGAT
*
10254600 CACACTCGAGATTGATTTGTTTCTACTACTCTTCTGGGGAGACCAAATCTAAAATAAGAAGAATA
131 CACACTCGAGATTGATTTGCTTCTACTACTCTTCTGGGGAGACCAAATCTAAAATAAGAAGAATA
10254665 TGTTCCACTACAATGCTGTGGAGATCAGACT
196 TGTTCCACTACAATGCTGTGGAGATCAGACT
* * *
10254696 TGAAATAAGAAGAATATGTTCTACTACTC-TTC-TGGGGAGATCAGACTCGAGATTGATTTGCTT
1 TGAAATAAGAAGAATATATTCCACTACTCTTTCAT--GGAGATCAGACTAGAGATTGATTT-CTT
* * * * *
10254759 ACACTAATCTTCCATGGAGACCAAATCTAAAATAAGAAGAATATGTTCCACTACTATTCCGTGGA
63 ACACTAATCTTCCAGGGAGACCAAATATAAAATAAGAAGAATATGTTCAACAACCATTCCGTGGA
* * *
10254824 GATCACACTCGAGATTGATTTGCTTC-ACTACTCTTCTGTGGAGACCAAATCTGAAATAAGAATA
128 GATCACACTCGAGATTGATTTGCTTCTACTACTCTTCTGGGGAGACCAAATCTAAAATAAGAAGA
10254888 ATATGTT
193 ATATGTT
10254895 AAATACTCTT
Statistics
Matches: 172, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
224 1 0.01
225 3 0.02
226 89 0.52
227 79 0.46
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (226 bp):
TGAAATAAGAAGAATATATTCCACTACTCTTTCATGGAGATCAGACTAGAGATTGATTTCTTACA
CTAATCTTCCAGGGAGACCAAATATAAAATAAGAAGAATATGTTCAACAACCATTCCGTGGAGAT
CACACTCGAGATTGATTTGCTTCTACTACTCTTCTGGGGAGACCAAATCTAAAATAAGAAGAATA
TGTTCCACTACAATGCTGTGGAGATCAGACT
Found at i:10254980 original size:178 final size:178
Alignment explanation
Indices: 10254696--10255141 Score: 551
Period size: 178 Copynumber: 2.5 Consensus size: 178
10254686 AGATCAGACT
*
10254696 TGAAATAAGAAGAATATGTTCTACTACTCTTCTGGGGAGATCAGACTCGAGATTGATTTGCTTAC
1 TGAAATAAGAA-AATATGTTCTACTACTCTTCTGTGGAGATCAGACTCGAGATTGATTTGCTT-C
* * * *
10254761 -ACTAATCTTCCATGG-AGACCAAATCTAAAATAAGAAGAATATGTTCCACTACTATTCCGTGGA
64 TACTACTCTT-C-GGGAAGACCAAATATAAAATAAGAAGAATATGTTCCACTACTATTCCATGGA
* *
10254824 GATCACACTCGAGATTGATTTGCTT-CACTACTCTTCTGTGGAGACCAAATC
127 GATCACACTCGAGATTGATTTGCTTCCACTACTCTTCTGGGGAGACCAAATA
* * ** * *
10254875 TGAAATAAGAATAATATGTT-AAATACTCTTCTGTACAGATCATACTCGAGATTGATTTCCTTCT
1 TGAAATAAGAA-AATATGTTCTACTACTCTTCTGTGGAGATCAGACTCGAGATTGATTTGCTTCT
* * *
10254939 ACTACTCTTCGGGGAAGACCAAATATGAAATAAGAAGAATATGTTCTACTACTCTTCCATGGAGA
65 ACTACTCTTC-GGGAAGACCAAATATAAAATAAGAAGAATATGTTCCACTACTATTCCATGGAGA
* * * * *
10255004 TCAGACTCTATATTGATTTGCTTCCATTACTCTTTTGGGGAGACCAAATA
129 TCACACTCGAGATTGATTTGCTTCCACTACTCTTCTGGGGAGACCAAATA
* * * *
10255054 TGAAATAAGGAAAATTTGTTCTACTATTCTTCCGTGGAGATCAGACTTGAGATTGATTTGCTT-T
1 TGAAATAA-GAAAATATGTTCTACTACTCTTCTGTGGAGATCAGACTCGAGATTGATTTGCTTCT
*
10255118 GCTACTCTTTCGGGAAGACCAAAT
65 ACTACTC-TTCGGGAAGACCAAAT
10255142 CTAACATGTT
Statistics
Matches: 227, Mismatches: 34, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
177 4 0.02
178 108 0.48
179 76 0.33
180 39 0.17
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (178 bp):
TGAAATAAGAAAATATGTTCTACTACTCTTCTGTGGAGATCAGACTCGAGATTGATTTGCTTCTA
CTACTCTTCGGGAAGACCAAATATAAAATAAGAAGAATATGTTCCACTACTATTCCATGGAGATC
ACACTCGAGATTGATTTGCTTCCACTACTCTTCTGGGGAGACCAAATA
Found at i:10255456 original size:62 final size:62
Alignment explanation
Indices: 10255380--10255732 Score: 397
Period size: 62 Copynumber: 5.7 Consensus size: 62
10255370 GAAGTAAATA
* * * * * * ***
10255380 ATAACAAAGGTTGACTTTTATTCACGAGGAAGTCAATGATTGACTCTAAGGGGGAGTCA-ATG
1 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACTCTACTAGGGAGTCAGA-G
* * * * * * * * * *
10255442 ATAACAAAGGTTGACTTATATTTATGAGGAAATCAAGGATTGACTCTACCATGGAGTCGGGG
1 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACTCTACTAGGGAGTCAGAG
* *
10255504 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTAAAAGA-TGTACTCTATTAGGGAGTCAGAG
1 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTG-ACTCTACTAGGGAGTCAGAG
* * * * * * *
10255566 ATAACAAAGGTTGACATCTCTTG-CGAGAAAATCAAAGATTGACTCTACTAGGGAGTTAGAA
1 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACTCTACTAGGGAGTCAGAG
* *
10255627 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACTCTACTGGGGAGTCAGAA
1 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACTCTACTAGGGAGTCAGAG
10255689 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGAC
1 ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGAC
10255733 AAAAATTGAC
Statistics
Matches: 248, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
61 51 0.21
62 197 0.79
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (62 bp):
ATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACTCTACTAGGGAGTCAGAG
Found at i:10255469 original size:100 final size:100
Alignment explanation
Indices: 10255279--10255472 Score: 264
Period size: 100 Copynumber: 1.9 Consensus size: 100
10255269 GGGAGTTAGA
* ** *
10255279 AATAACAAAGGTTAACTTCTCTTCACGAGAAAGTCATGGATTGACTCTACTGGGGAGTCAGGGAT
1 AATAACAAAGGTTAACTTCTATTCACGAGAAAGTCATGGATTGACTCTAAGGGGGAGTCAAGGAT
* * *
10255344 AACAAAGGTTGATTTTTCTTCATGAGGAAGTAAAT
66 AACAAAGGTTGACTTATATTCATGAGGAAGTAAAT
* * * *
10255379 AATAACAAAGGTTGACTTTTATTCACGAGGAAGTCAAT-GATTGACTCTAAGGGGGAGTCAATGA
1 AATAACAAAGGTTAACTTCTATTCACGAGAAAGTC-ATGGATTGACTCTAAGGGGGAGTCAAGGA
*
10255443 TAACAAAGGTTGACTTATATTTATGAGGAA
65 TAACAAAGGTTGACTTATATTCATGAGGAA
10255473 ATCAAGGATT
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 79 0.98
101 2 0.02
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (100 bp):
AATAACAAAGGTTAACTTCTATTCACGAGAAAGTCATGGATTGACTCTAAGGGGGAGTCAAGGAT
AACAAAGGTTGACTTATATTCATGAGGAAGTAAAT
Found at i:10255635 original size:33 final size:32
Alignment explanation
Indices: 10255598--10255704 Score: 107
Period size: 33 Copynumber: 3.4 Consensus size: 32
10255588 GCGAGAAAAT
*
10255598 CAAAGATTGACTCTACTAGGGAGTTAGAAATAA
1 CAAAGATTGACTCTACT-GGGAGTCAGAAATAA
* * *
10255631 CAAAGATTGACTTCT-CT-TGA-TGAGGAAGT--
1 CAAAGATTGAC-TCTACTGGGAGTCA-GAAATAA
10255660 CAAAGATTGACTCTACTGGGGAGTCAGAAATAA
1 CAAAGATTGACTCTACT-GGGAGTCAGAAATAA
10255693 CAAAGATTGACT
1 CAAAGATTGACT
10255705 TCTCTTGATG
Statistics
Matches: 60, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
28 3 0.05
29 13 0.22
30 2 0.03
31 12 0.20
32 2 0.03
33 25 0.42
34 3 0.05
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.25
Consensus pattern (32 bp):
CAAAGATTGACTCTACTGGGAGTCAGAAATAA
Found at i:10255644 original size:123 final size:123
Alignment explanation
Indices: 10255379--10255732 Score: 390
Period size: 123 Copynumber: 2.9 Consensus size: 123
10255369 GGAAGTAAAT
* * * * * * * ***
10255379 AATAACAAAGGTTGACTTTTATTCACGAGGAAGTCAATGATTGACTCTAAGGGGGAGTCA-ATGA
1 AATAACAAAGATTGACTTCTCTTGATGAGGAAGTAAAAGATTGACTCTACTAGGGAGTCAGA-GA
* * * * * *
10255443 TAACAAAGGTTGACTTATAT-TTATGAGGAAATCAAGGATTGACTCTACCATGGAGTCGGG
65 TAACAAAGGTTGAC--ATCTCTTGTGAGGAAATCAAAGATTGACTCTACCAGGGAGTCAGA
* *
10255503 GATAACAAAGATTGACTTCTCTTGATGAGGAAGTAAAAGA-TGTACTCTATTAGGGAGTCAGAGA
1 AATAACAAAGATTGACTTCTCTTGATGAGGAAGTAAAAGATTG-ACTCTACTAGGGAGTCAGAGA
* * * *
10255567 TAACAAAGGTTGACATCTCTTGCGAGAAAATCAAAGATTGACTCTACTAGGGAGTTAGA
65 TAACAAAGGTTGACATCTCTTGTGAGGAAATCAAAGATTGACTCTACCAGGGAGTCAGA
* * *
10255626 AATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACTCTACTGGGGAGTCAGAAAT
1 AATAACAAAGATTGACTTCTCTTGATGAGGAAGTAAAAGATTGACTCTACTAGGGAGTCAGAGAT
* * *
10255691 AACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGAC
66 AACAAAGGTTGACATCTCTTG-TGAGGAAATCAAAGATTGAC
10255733 AAAAATTGAC
Statistics
Matches: 194, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
122 3 0.02
123 109 0.56
124 81 0.42
125 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (123 bp):
AATAACAAAGATTGACTTCTCTTGATGAGGAAGTAAAAGATTGACTCTACTAGGGAGTCAGAGAT
AACAAAGGTTGACATCTCTTGTGAGGAAATCAAAGATTGACTCTACCAGGGAGTCAGA
Found at i:10255782 original size:38 final size:38
Alignment explanation
Indices: 10255688--10256053 Score: 349
Period size: 38 Copynumber: 9.5 Consensus size: 38
10255678 GGGAGTCAGA
* * *
10255688 AATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAG
1 AATAACAAAAATTGACTTCTCTTCACGAGGAAGTC-AAG
* * *
10255727 ATTGACAAAAATTGACTTCTCTTCACGAGAAAGTCAAG
1 AATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAG
10255765 AATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAG
1 AATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAG
* * * * *** * *
10255803 ACTAACAAAGATTAACTCCTCTTTGTGAGGGAGTCAATT
1 AATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAA-G
* * * * * * *
10255842 ATTTGACTAAAACTGACTTCTCTTAATGAGGAAGTAAAG
1 A-ATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAG
* *
10255881 AATAACAAAAATTGACTTCTCTTCAAGAGAAAGTCAAG
1 AATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAG
* * *
10255919 ACTAA-AAAATATTGATTTCTCTTCACGAGGAAGTTAATG
1 AATAACAAAA-ATTGACTTCTCTTCACGAGGAAGTCAA-G
* * *
10255958 ATTGACAAAAGCTTG-CTTCTCTTCACGAGGAAGTCAAG
1 AATAACAAAA-ATTGACTTCTCTTCACGAGGAAGTCAAG
* * *
10255996 AATAACAAAAATTTACTTCTCTTCATGAAGAAGTCAAG
1 AATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAG
* *
10256034 ACTAACAAAGATTGACTTCT
1 AATAACAAAAATTGACTTCT
10256054 TAGGAAAAAT
Statistics
Matches: 263, Mismatches: 58, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
37 6 0.02
38 170 0.65
39 55 0.21
40 32 0.12
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (38 bp):
AATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAG
Found at i:10255916 original size:78 final size:76
Alignment explanation
Indices: 10255688--10256053 Score: 295
Period size: 77 Copynumber: 4.8 Consensus size: 76
10255678 GGGAGTCAGA
* * * * * *
10255688 AATAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACAAAAATTGACTTCTCTTCAC
1 AATAACAAAAACTGACTTCTCTTAATGAGGAAGT-AAAGAATAACAAAAATTGACTTCTCTTCAA
10255753 GAGAAAGTCAAG
65 GAGAAAGTCAAG
* * * * * * * * ***
10255765 AATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAGACTAACAAAGATTAACTCCTCTTTGTG
1 AATAACAAAAACTGACTTCTCTTAATGAGGAAGTAAAGAATAACAAAAATTGACTTCTCTTCAAG
** *
10255830 AGGGAGTCAATT
66 AGAAAGTCAA-G
* * *
10255842 ATTTGACTAAAACTGACTTCTCTTAATGAGGAAGTAAAGAATAACAAAAATTGACTTCTCTTCAA
1 A-ATAACAAAAACTGACTTCTCTTAATGAGGAAGTAAAGAATAACAAAAATTGACTTCTCTTCAA
10255907 GAGAAAGTCAAG
65 GAGAAAGTCAAG
* * * * * * * * *
10255919 ACTAA-AAAATATTGATTTCTCTTCACGAGGAAGTTAATGATTGACAAAAGCTTG-CTTCTCTTC
1 AATAACAAAA-ACTGACTTCTCTTAATGAGGAAG-TAAAGAATAACAAAA-ATTGACTTCTCTTC
* *
10255982 ACGAGGAAGTCAAG
63 AAGAGAAAGTCAAG
* * * * * * *
10255996 AATAACAAAAATTTACTTCTCTTCATGAAGAAGTCAAGACTAACAAAGATTGACTTCT
1 AATAACAAAAACTGACTTCTCTTAATGAGGAAGTAAAGAATAACAAAAATTGACTTCT
10256054 TAGGAAAAAT
Statistics
Matches: 226, Mismatches: 56, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
75 6 0.03
76 66 0.29
77 89 0.39
78 65 0.29
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (76 bp):
AATAACAAAAACTGACTTCTCTTAATGAGGAAGTAAAGAATAACAAAAATTGACTTCTCTTCAAG
AGAAAGTCAAG
Found at i:10256018 original size:115 final size:115
Alignment explanation
Indices: 10255690--10256053 Score: 473
Period size: 115 Copynumber: 3.2 Consensus size: 115
10255680 GAGTCAGAAA
* * *
10255690 TAACAAAGATTGACTTCTCTTGATGAGGAAGTCAAAGATTGACAAAAATTGACTTCTCTTCACGA
1 TAACAAAGATTGACTTCTCTTCATGAGGAAGTCAATGATTGACAAAACTTGACTTCTCTTCACGA
* * *
10255755 GAAAGTCAAGAATAACAAAAATTGACTTCTCTTCACGAGGAAGTCAAGAC
66 GGAAGTCAAGAATAACAAAAATTGACTTCTCTTCAAGAGAAAGTCAAGAC
* * ** * * * *
10255805 TAACAAAGATTAACTCCTCTTTGTGAGGGAGTCAATTATTTGACTAAAAC-TGACTTCTCTTAAT
1 TAACAAAGATTGACTTCTCTTCATGAGGAAGTCAATGA-TTGAC-AAAACTTGACTTCTCTTCAC
*
10255869 GAGGAAGTAAAGAATAACAAAAATTGACTTCTCTTCAAGAGAAAGTCAAGAC
64 GAGGAAGTCAAGAATAACAAAAATTGACTTCTCTTCAAGAGAAAGTCAAGAC
* * * * *
10255921 TAAAAAATATTGATTTCTCTTCACGAGGAAGTTAATGATTGACAAAAGCTTG-CTTCTCTTCACG
1 TAACAAAGATTGACTTCTCTTCATGAGGAAGTCAATGATTGACAAAA-CTTGACTTCTCTTCACG
* *
10255985 AGGAAGTCAAGAATAACAAAAATTTACTTCTCTTCATGA-AGAAGTCAAGAC
65 AGGAAGTCAAGAATAACAAAAATTGACTTCTCTTCAAGAGA-AAGTCAAGAC
10256036 TAACAAAGATTGACTTCT
1 TAACAAAGATTGACTTCT
10256054 TAGGAAAAAT
Statistics
Matches: 211, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
114 5 0.02
115 108 0.51
116 94 0.45
117 4 0.02
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (115 bp):
TAACAAAGATTGACTTCTCTTCATGAGGAAGTCAATGATTGACAAAACTTGACTTCTCTTCACGA
GGAAGTCAAGAATAACAAAAATTGACTTCTCTTCAAGAGAAAGTCAAGAC
Found at i:10268557 original size:25 final size:24
Alignment explanation
Indices: 10268523--10268575 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
10268513 AATAACATGA
* *
10268523 AACCTATGTATCAGCTTTGTAATTT
1 AACCTATGTATCACCATTGTAA-TT
10268548 AACCTATGTATCACCATTGTAATT
1 AACCTATGTATCACCATTGTAATT
10268572 AACC
1 AACC
10268576 ATAACTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (24 bp):
AACCTATGTATCACCATTGTAATT
Found at i:10270259 original size:45 final size:45
Alignment explanation
Indices: 10270180--10270272 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
10270170 ATAAAATGAG
*
10270180 AGTCTTAGGAAATAAGTTGGGAAATACTAGTAATAGCTCCAACAT
1 AGTCCTAGGAAATAAGTTGGGAAATACTAGTAATAGCTCCAACAT
* *
10270225 AGTCCTAGGAAATAAGTTGGGTAATGCT-GATAATAGCTCCAACAT
1 AGTCCTAGGAAATAAGTTGGGAAATACTAG-TAATAGCTCCAACAT
10270270 AGT
1 AGT
10270273 GAGATGAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 1 0.02
45 43 0.98
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (45 bp):
AGTCCTAGGAAATAAGTTGGGAAATACTAGTAATAGCTCCAACAT
Found at i:10276585 original size:138 final size:137
Alignment explanation
Indices: 10276327--10276604 Score: 378
Period size: 138 Copynumber: 2.0 Consensus size: 137
10276317 AAGTGCCGTT
* * ** *
10276327 ATGGAAATTTACAAACTCATTATGAATTTCATGGATGCACACACTATGTCGAAAGTACATATAGT
1 ATGGAAATTCACAAAATCATTATGAATACCATGGATGCACACACTATGTCGAAAGTACAGATAGT
** *
10276392 ACTGATACGAAAATGCACCGTTATGCATTAAACAAAATCGATCGATAAATTTTATACATAATTGT
66 ACTGATACGAAAATGCACCGTTATGCATTAAACAAAATCGATCGATAAACATTATACACAATT-T
*
10276457 ATGTCGAA
130 ATGTCAAA
* * *
10276465 ATGGTAATTCACAAAATCATTATGAATACCATGGTTGCACA-ACTAGTGTTGAAAGTACAGATAG
1 ATGGAAATTCACAAAATCATTATGAATACCATGGATGCACACACTA-TGTCGAAAGTACAGATAG
* * ** *
10276529 TACTGATACGATAATGCACCGTTGTGCATTAAACAAAATCGATCGATAGCCATTATATACAATTT
65 TACTGATACGAAAATGCACCGTTATGCATTAAACAAAATCGATCGATAAACATTATACACAATTT
10276594 ATGTCAAA
130 ATGTCAAA
10276602 ATG
1 ATG
10276605 CACCTATGAT
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
137 15 0.12
138 107 0.88
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (137 bp):
ATGGAAATTCACAAAATCATTATGAATACCATGGATGCACACACTATGTCGAAAGTACAGATAGT
ACTGATACGAAAATGCACCGTTATGCATTAAACAAAATCGATCGATAAACATTATACACAATTTA
TGTCAAA
Found at i:10283473 original size:138 final size:138
Alignment explanation
Indices: 10283225--10283478 Score: 357
Period size: 138 Copynumber: 1.8 Consensus size: 138
10283215 ACCTAAGTAC
* * * *
10283225 CGAAATTGAAATTCACAAACTCATTTTGAATTCCATGGATACACACATAATGTCGAAAGTACATA
1 CGAAATGGAAATTCACAAACTCATTATGAATACCATAGATACACACATAATGTCGAAAGTACATA
* *
10283290 TAGTACTGATACAAAAATGAACCGTTATACATTAAACTAAATCGATCGATAAATTTTATACATAA
66 TAGTACTGATACAAAAATGAACCATTATACATTAAACAAAATCGATCGATAAATTTTATACATAA
10283355 TTGTATGT
131 TTGTATGT
* * * *
10283363 CGAAATGGTAATTCACAAACTCATTATGAATACCATAGTTGCACATC-TAGTGTCGAAAGTACAT
1 CGAAATGGAAATTCACAAACTCATTATGAATACCATAGATACACA-CATAATGTCGAAAGTACAT
* * * * *
10283427 ATAGTACTGATACGATATTGCACCATTATGCATTAAACAAAATCGATCGATA
65 ATAGTACTGATACAAAAATGAACCATTATACATTAAACAAAATCGATCGATA
10283479 GCCATTATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
138 99 0.99
139 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (138 bp):
CGAAATGGAAATTCACAAACTCATTATGAATACCATAGATACACACATAATGTCGAAAGTACATA
TAGTACTGATACAAAAATGAACCATTATACATTAAACAAAATCGATCGATAAATTTTATACATAA
TTGTATGT
Found at i:10291788 original size:64 final size:64
Alignment explanation
Indices: 10291735--10291897 Score: 220
Period size: 65 Copynumber: 2.5 Consensus size: 64
10291725 CGGTGCACCA
*
10291735 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCCAGAGTGCATCGATGCATGG
** * **
10291799 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCCAGAGTGCATCGATGCATGG
* * *
10291864 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
10291898 CAATTAATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
64 39 0.46
65 46 0.54
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (64 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCCAGAGTGCATCGATGCATGG
Found at i:10291869 original size:19 final size:19
Alignment explanation
Indices: 10291845--10291895 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
10291835 GAAAATATTC
10291845 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
10291864 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
10291883 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
10291896 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:10293004 original size:21 final size:21
Alignment explanation
Indices: 10292966--10293009 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
10292956 GCTGGAGGGG
*
10292966 AGGAGGAGCACGAGAAGAACT
1 AGGAGCAGCACGAGAAGAACT
* *
10292987 AGGAGCAGCTCGATAAGAACT
1 AGGAGCAGCACGAGAAGAACT
10293008 AG
1 AG
10293010 CTCCCGGAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.16, G:0.34, T:0.09
Consensus pattern (21 bp):
AGGAGCAGCACGAGAAGAACT
Found at i:10293849 original size:21 final size:21
Alignment explanation
Indices: 10293793--10293856 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
10293783 TCAATAAGCC
* *
10293793 ATTAGGA-GCTTGAGGATCAGG
1 ATTAGGATG-TTGAGGAACGGG
* **
10293814 ATTAGGTTGAGGAGGAACGGG
1 ATTAGGATGTTGAGGAACGGG
10293835 ATTAGGATGTTGAGGAACGGG
1 ATTAGGATGTTGAGGAACGGG
10293856 A
1 A
10293857 GGACGGTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
21 33 0.97
22 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.42, T:0.22
Consensus pattern (21 bp):
ATTAGGATGTTGAGGAACGGG
Found at i:10304225 original size:109 final size:109
Alignment explanation
Indices: 10304093--10304537 Score: 791
Period size: 109 Copynumber: 4.1 Consensus size: 109
10304083 GCCATCCGCA
*
10304093 ATTTCAACCCCACGACGGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAA
1 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAA
*
10304158 GGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTCATAGTCG
66 GGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGTCG
10304202 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAA
1 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAA
*
10304267 GGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCG
66 GGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGTCG
* * *
10304311 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCAAGACAACACAAGTTCAAATTCACAACAAA
1 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAA
* *
10304376 GGGATGGCTGGTTGTCAACAAACAACTTCCCAATTTTAGAGTCG
66 GGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGTCG
*
10304420 ATTTCAACTCCACAACGGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAA
1 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAA
*
10304485 GGGACGGTTGGTTGTCAACAAACAACTTCCCAATTTCAGAGTCG
66 GGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGTCG
*
10304529 ATTTTAACT
1 ATTTCAACT
10304538 TGTCTTGGAT
Statistics
Matches: 319, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 319 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (109 bp):
ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAA
GGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGTCG
Found at i:10305082 original size:35 final size:35
Alignment explanation
Indices: 10304990--10305061 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
10304980 CGAACAAAGA
*
10304990 AGAGTTGGATTAGGACTCAAATACTAGTCTAGAAT
1 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
10305025 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
10305060 AG
1 AG
10305062 GGTTTTTTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (35 bp):
AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
Found at i:10311530 original size:26 final size:25
Alignment explanation
Indices: 10311480--10311531 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
10311470 CTCTTTCTCA
*
10311480 TGTTTTAGTTTATTTTTTGTATTTT
1 TGTTTTAGTTTATTTTTTGCATTTT
* *
10311505 TGTTTTGAGTTTTTTTTTTGCGTTTT
1 TGTTTT-AGTTTATTTTTTGCATTTT
10311531 T
1 T
10311532 TTGTGGCATG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.08, C:0.02, G:0.15, T:0.75
Consensus pattern (25 bp):
TGTTTTAGTTTATTTTTTGCATTTT
Found at i:10311532 original size:13 final size:13
Alignment explanation
Indices: 10311482--10311533 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
10311472 CTTTCTCATG
*
10311482 TTTT-AGTTTATT
1 TTTTGAGTTTTTT
*
10311494 TTTTGTA-TTTTTG
1 TTTTG-AGTTTTTT
10311507 TTTTGAGTTTTTT
1 TTTTGAGTTTTTT
*
10311520 TTTTGCGTTTTTT
1 TTTTGAGTTTTTT
10311533 T
1 T
10311534 GTGGCATGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
12 5 0.15
13 27 0.82
14 1 0.03
ACGTcount: A:0.08, C:0.02, G:0.13, T:0.77
Consensus pattern (13 bp):
TTTTGAGTTTTTT
Found at i:10317489 original size:35 final size:35
Alignment explanation
Indices: 10317449--10317583 Score: 135
Period size: 35 Copynumber: 3.9 Consensus size: 35
10317439 GATACTAGCT
* * *
10317449 GAGAGTCATGTTTTATATTCAGATAATGCACAATA
1 GAGAGTCATGTGTCACATTCAGATAATGCACAATA
* * * *
10317484 GAGAGTTATGTGTCACATTTAGATAAGGCACAGTA
1 GAGAGTCATGTGTCACATTCAGATAATGCACAATA
* * * *
10317519 GAGAGTCATGTGTCGCATTCAAATAATGTAAAATA
1 GAGAGTCATGTGTCACATTCAGATAATGCACAATA
* * * *
10317554 GTGAATCATGTGTTACATTTAGATAATGCA
1 GAGAGTCATGTGTCACATTCAGATAATGCA
10317584 TAGCAGTGTG
Statistics
Matches: 78, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 78 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (35 bp):
GAGAGTCATGTGTCACATTCAGATAATGCACAATA
Found at i:10325250 original size:21 final size:21
Alignment explanation
Indices: 10325212--10325251 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10325202 ATATGTGTTT
*
10325212 TAAAAAGATGGATTTGATAGA
1 TAAAAAGATGGATGTGATAGA
* *
10325233 TAAAAAGTTTGATGTGATA
1 TAAAAAGATGGATGTGATA
10325252 AATTATTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.33
Consensus pattern (21 bp):
TAAAAAGATGGATGTGATAGA
Found at i:10326755 original size:15 final size:15
Alignment explanation
Indices: 10326735--10326763 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10326725 TGGGCGACCG
10326735 AACCGAATTAACCAT
1 AACCGAATTAACCAT
10326750 AACCGAATTAACCA
1 AACCGAATTAACCA
10326764 AACTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.28, G:0.07, T:0.17
Consensus pattern (15 bp):
AACCGAATTAACCAT
Found at i:10326967 original size:14 final size:15
Alignment explanation
Indices: 10326926--10326968 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
10326916 AAAAAAGTTT
* *
10326926 ATAATTAATTTAAATA
1 ATAAATAATTTTAA-A
10326942 ATAAATAATTTTAAA
1 ATAAATAATTTTAAA
10326957 ATAAA-AATTTTA
1 ATAAATAATTTTA
10326969 GATAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 7 0.28
15 6 0.24
16 12 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAAATAATTTTAAA
Found at i:10327209 original size:183 final size:184
Alignment explanation
Indices: 10326888--10327273 Score: 638
Period size: 183 Copynumber: 2.1 Consensus size: 184
10326878 TTTTCTAATT
* *
10326888 TATATAA-A-ATTAAATATTTTTTAATTCAAAAAAAGTTTATAATTAATTTAAATAATAAATAAT
1 TATATAATATATTTAATATTTTTTAATTCAAAAAAAGTTTACAATTAATTTAAATAATAAATAAT
* *
10326951 TTTAAAATAAAAATTTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
66 TATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
10327016 AGATCTTAAATTATTAATTGGGTTTTAAATAATTTGGGCTT-AGCCCATATGTTA
131 AGATCTTAAATTATTAATTGGGTTTTAAATAATTTGGG-TTGAGCCCATATGTTA
*
10327070 TATATAATATATTTAATATTTTTTAATT-AAAAAATAGTTTACAATTAATTTAAATAATATATAA
1 TATATAATATATTTAATATTTTTTAATTCAAAAAA-AGTTTACAATTAATTTAAATAATAAATAA
*
10327134 TTATAAAATAAAAAATTTATAT-AATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTAT
65 TTATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTAT
* * *
10327198 TATATCTTAAATTATTAATTGGGTTTTTAATGATTTGGGTTGAGCCCATATGTTA
130 TAGATCTTAAATTATTAATTGGGTTTTAAATAATTTGGGTTGAGCCCATATGTTA
10327253 TATATAATATATTTAATATTT
1 TATATAATATATTTAATATTT
10327274 AAAATTTAAT
Statistics
Matches: 191, Mismatches: 9, Indels: 7
0.92 0.04 0.03
Matches are distributed among these distances:
182 9 0.05
183 119 0.62
184 63 0.33
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (184 bp):
TATATAATATATTTAATATTTTTTAATTCAAAAAAAGTTTACAATTAATTTAAATAATAAATAAT
TATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
AGATCTTAAATTATTAATTGGGTTTTAAATAATTTGGGTTGAGCCCATATGTTA
Found at i:10329136 original size:17 final size:18
Alignment explanation
Indices: 10329096--10329139 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
10329086 TAATTTGATT
* *
10329096 AATGAACTAGTTTAAATG
1 AATGAACTAGTGTAAATC
10329114 AATGAACTAGTGT-AATC
1 AATGAACTAGTGTAAATC
10329131 AATGAACTA
1 AATGAACTA
10329140 ACTTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (18 bp):
AATGAACTAGTGTAAATC
Found at i:10330173 original size:68 final size:68
Alignment explanation
Indices: 10329942--10330230 Score: 192
Period size: 68 Copynumber: 4.2 Consensus size: 68
10329932 TCCCAATTAA
* * ** * * ** * * * *
10329942 TAATCATATTTATTTCAGGTGTCTCGCAGGGGAGCCCCGAATAATTAGGGTGACTCATACAAGAA
1 TAATCATATTTATTTTAGGTGTCTTGCACAGGAACCCCAAAGGATTAGAGTAACTC-GACAAGAG
*
10330007 CATC
65 CACC
* * * * * * *
10330011 TAATTATATTTA-TTTCGAGTGTCTCGCACGGGAGCTCCGAAA-GATTAGAGTGACTC-ACGAA-
1 TAATCATATTTATTTTAG-GTGTCTTGCACAGGAAC-CCCAAAGGATTAGAGTAACTCGAC-AAG
* *
10330072 AGGACA
63 AGCACC
* * *
10330078 TAATCATATTTATGTTAGGTGTCTTGCACGGGAACCCCAAATGATTAGAGTAACTCG-CATAGAG
1 TAATCATATTTATTTTAGGTGTCTTGCACAGGAACCCCAAAGGATTAGAGTAACTCGACA-AGAG
*
10330142 CACT
65 CACC
* * * * *
10330146 TAATCATATTTATTTTTGGTGTTTTGCACAGGAGCCTCAAAGGATTAGAGTGACTCGTACAAGAG
1 TAATCATATTTATTTTAGGTGTCTTGCACAGGAACCCCAAAGGATTAGAGTAACTCG-ACAAGAG
10330211 CACC
65 CACC
**
10330215 TGCTCATATTTATTTT
1 TAATCATATTTATTTT
10330231 GTGTGAGTCG
Statistics
Matches: 178, Mismatches: 32, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
66 6 0.03
67 45 0.25
68 61 0.34
69 60 0.34
70 6 0.03
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (68 bp):
TAATCATATTTATTTTAGGTGTCTTGCACAGGAACCCCAAAGGATTAGAGTAACTCGACAAGAGC
ACC
Found at i:10331987 original size:32 final size:31
Alignment explanation
Indices: 10331951--10332027 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
10331941 CGGGGCCGTG
*
10331951 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
10331983 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
10332014 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
10332028 CTCACATTAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 24 0.65
32 13 0.35
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:10332010 original size:63 final size:63
Alignment explanation
Indices: 10331904--10332027 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
10331894 CCCTAAGGGA
* * ** *
10331904 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
10331967 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAGA
10332028 CTCACATTAG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 2 0.04
63 50 0.96
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:10332949 original size:17 final size:17
Alignment explanation
Indices: 10332923--10332978 Score: 103
Period size: 17 Copynumber: 3.3 Consensus size: 17
10332913 CGATCAACGA
*
10332923 TCAACGGTCGGGTCGGG
1 TCAACAGTCGGGTCGGG
10332940 TCAACAGTCGGGTCGGG
1 TCAACAGTCGGGTCGGG
10332957 TCAACAGTCGGGTCGGG
1 TCAACAGTCGGGTCGGG
10332974 TCAAC
1 TCAAC
10332979 TCGGTTCAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.18, C:0.25, G:0.39, T:0.18
Consensus pattern (17 bp):
TCAACAGTCGGGTCGGG
Found at i:10332993 original size:10 final size:10
Alignment explanation
Indices: 10332980--10333026 Score: 53
Period size: 9 Copynumber: 4.9 Consensus size: 10
10332970 CGGGTCAACT
*
10332980 CGGTTCAGAC
1 CGGTTCAAAC
10332990 CGG-TCAAAC
1 CGGTTCAAAC
*
10332999 CGGTTCAGAC
1 CGGTTCAAAC
*
10333009 TGG-TCAAAC
1 CGGTTCAAAC
10333018 CGGTTCAAA
1 CGGTTCAAA
10333027 ACTGGTCAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
9 15 0.50
10 15 0.50
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (10 bp):
CGGTTCAAAC
Found at i:10333032 original size:20 final size:19
Alignment explanation
Indices: 10332980--10333042 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
10332970 CGGGTCAACT
* *
10332980 CGGTTCAGACCGGTCAAAC
1 CGGTTCAAACTGGTCAAAC
*
10332999 CGGTTCAGACTGGTCAAAC
1 CGGTTCAAACTGGTCAAAC
*
10333018 CGGTTCAAAACTGGTCAAAT
1 CGGTTC-AAACTGGTCAAAC
10333038 CGGTT
1 CGGTT
10333043 TTCCAGCAGC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 24 0.60
20 16 0.40
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (19 bp):
CGGTTCAAACTGGTCAAAC
Found at i:10339281 original size:32 final size:31
Alignment explanation
Indices: 10339245--10339321 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
10339235 TGGGGCCGTG
*
10339245 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
10339277 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
10339308 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
10339322 GTCACATTAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 24 0.65
32 13 0.35
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:10340196 original size:7 final size:7
Alignment explanation
Indices: 10340184--10340220 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
10340174 GTCAAAGAAA
10340184 GTCAACG
1 GTCAACG
10340191 GTCAACG
1 GTCAACG
10340198 GTC-ACG
1 GTCAACG
*
10340204 GTCAACT
1 GTCAACG
10340211 GTCAACG
1 GTCAACG
10340218 GTC
1 GTC
10340221 GGGTAGGGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (7 bp):
GTCAACG
Found at i:10340206 original size:13 final size:14
Alignment explanation
Indices: 10340184--10340220 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
10340174 GTCAAAGAAA
10340184 GTCAACGGTCAACG
1 GTCAACGGTCAACG
*
10340198 GTC-ACGGTCAACT
1 GTCAACGGTCAACG
10340211 GTCAACGGTC
1 GTCAACGGTC
10340221 GGGTAGGGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (14 bp):
GTCAACGGTCAACG
Found at i:10340233 original size:17 final size:17
Alignment explanation
Indices: 10340211--10340301 Score: 128
Period size: 17 Copynumber: 5.4 Consensus size: 17
10340201 ACGGTCAACT
* *
10340211 GTCAACGGTCGGGTAGG
1 GTCAACAGTCGGGTCGG
* *
10340228 GTCAACGGTCTGGTCGG
1 GTCAACAGTCGGGTCGG
*
10340245 GTCAACAGCCGGGTCGG
1 GTCAACAGTCGGGTCGG
10340262 GTCAACAGTCGGGTCGG
1 GTCAACAGTCGGGTCGG
*
10340279 GTCAACAATCGGGTCGG
1 GTCAACAGTCGGGTCGG
10340296 GTCAAC
1 GTCAAC
10340302 CTGGTTCAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 67 1.00
ACGTcount: A:0.19, C:0.24, G:0.40, T:0.18
Consensus pattern (17 bp):
GTCAACAGTCGGGTCGG
Found at i:10340326 original size:19 final size:19
Alignment explanation
Indices: 10340299--10340347 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
10340289 GGGTCGGGTC
*
10340299 AACCTGGTTCAGATCGATCA
1 AACC-GGTTCAGACCGATCA
*
10340319 AACCGGTTCAGACCGGTCA
1 AACCGGTTCAGACCGATCA
*
10340338 GACCGGTTCA
1 AACCGGTTCA
10340348 AAACTGGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (19 bp):
AACCGGTTCAGACCGATCA
Found at i:10342175 original size:18 final size:18
Alignment explanation
Indices: 10342152--10342195 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
10342142 TGATATGTGC
*
10342152 ATCACTTAGGAATGTTTA
1 ATCACTCAGGAATGTTTA
10342170 ATCACTCAGGAATGTTTA
1 ATCACTCAGGAATGTTTA
10342188 ATCACTCA
1 ATCACTCA
10342196 CTGAGCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (18 bp):
ATCACTCAGGAATGTTTA
Found at i:10347918 original size:51 final size:51
Alignment explanation
Indices: 10347858--10347954 Score: 158
Period size: 51 Copynumber: 1.9 Consensus size: 51
10347848 ATTTAACCTT
* * *
10347858 TGAATATGACACGTTGCGAATATAGAATAATTTAGAAAAAGGTTAAAATAA
1 TGAATATGACACGTTGCGAATAGAGAATAATTAAAAAAAAGGTTAAAATAA
*
10347909 TGAATATGACACGTTGCGAATAGGGAATAATTAAAAAAAAGGTTAA
1 TGAATATGACACGTTGCGAATAGAGAATAATTAAAAAAAAGGTTAA
10347955 GGGAGAGAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.48, C:0.06, G:0.20, T:0.26
Consensus pattern (51 bp):
TGAATATGACACGTTGCGAATAGAGAATAATTAAAAAAAAGGTTAAAATAA
Found at i:10348300 original size:24 final size:24
Alignment explanation
Indices: 10348256--10348301 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
10348246 AACTAGAACG
* **
10348256 GGAACGGGATAGAGAGCGAGATAT
1 GGAACGGGAAAGAGAAAGAGATAT
10348280 GGAACGGGAAAGAGAAAGAGAT
1 GGAACGGGAAAGAGAAAGAGAT
10348302 CGCTTGAGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.07, G:0.41, T:0.09
Consensus pattern (24 bp):
GGAACGGGAAAGAGAAAGAGATAT
Found at i:10352253 original size:24 final size:24
Alignment explanation
Indices: 10352226--10352379 Score: 159
Period size: 24 Copynumber: 6.5 Consensus size: 24
10352216 TTCCAGTTGA
* *
10352226 ACCAAAGGCAGGGGTGCTCGTGGC
1 ACCAAAGGCAGGGGTACTTGTGGC
* * * * *
10352250 ACCAAACGTAGGAGTGCTTGTGCC
1 ACCAAAGGCAGGGGTACTTGTGGC
* * *
10352274 ACCAAATGCAGGTGTACTTGAGGC
1 ACCAAAGGCAGGGGTACTTGTGGC
*
10352298 ACCAAAGGCAGGGGTGCTTGTGGC
1 ACCAAAGGCAGGGGTACTTGTGGC
*
10352322 ACCAAAAG-ACGGGGTACTTGTGGC
1 ACCAAAGGCA-GGGGTACTTGTGGC
* *
10352346 ACCAAAAGC-CGGGTACTTGTGGC
1 ACCAAAGGCAGGGGTACTTGTGGC
10352369 ACCAAAGGCAG
1 ACCAAAGGCAG
10352380 AGCTGGAACC
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
23 22 0.21
24 85 0.79
ACGTcount: A:0.27, C:0.23, G:0.34, T:0.16
Consensus pattern (24 bp):
ACCAAAGGCAGGGGTACTTGTGGC
Found at i:10352302 original size:72 final size:71
Alignment explanation
Indices: 10352226--10352379 Score: 211
Period size: 72 Copynumber: 2.2 Consensus size: 71
10352216 TTCCAGTTGA
* * *
10352226 ACCAAAGGCAGGGGTGCTCGTGGCACCAAACGTA-GGAGTGCTTGTGCCACCAAATGCAGGTGTA
1 ACCAAAGGCAGGGGTGCTCGTGGCACCAAAAG-ACGGAGTACTTGTGCCACCAAAAGCAGG-GTA
10352290 CTTGAGGC
64 CTTGAGGC
* * * *
10352298 ACCAAAGGCAGGGGTGCTTGTGGCACCAAAAGACGGGGTACTTGTGGCACCAAAAGCCGGGTACT
1 ACCAAAGGCAGGGGTGCTCGTGGCACCAAAAGACGGAGTACTTGTGCCACCAAAAGCAGGGTACT
*
10352363 TGTGGC
66 TGAGGC
10352369 ACCAAAGGCAG
1 ACCAAAGGCAG
10352380 AGCTGGAACC
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
71 22 0.30
72 51 0.70
ACGTcount: A:0.27, C:0.23, G:0.34, T:0.16
Consensus pattern (71 bp):
ACCAAAGGCAGGGGTGCTCGTGGCACCAAAAGACGGAGTACTTGTGCCACCAAAAGCAGGGTACT
TGAGGC
Found at i:10354582 original size:12 final size:12
Alignment explanation
Indices: 10354565--10354589 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10354555 TCTCCGGACG
10354565 TTGACTATATTT
1 TTGACTATATTT
10354577 TTGACTATATTT
1 TTGACTATATTT
10354589 T
1 T
10354590 AAGATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TTGACTATATTT
Found at i:10356949 original size:2 final size:2
Alignment explanation
Indices: 10356944--10356991 Score: 60
Period size: 2 Copynumber: 24.0 Consensus size: 2
10356934 ACACACACAC
* * * *
10356944 AT AT AT AC AT AT AT AT AT AT AT GT AT AT AT AC AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10356986 AT AT AT
1 AT AT AT
10356992 CAAAAAATCG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:10358215 original size:25 final size:25
Alignment explanation
Indices: 10358180--10358240 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
10358170 ACCAATCGCT
* * * *
10358180 GGTCAACGGTCGATCGACAGTTAAC
1 GGTCAATGGTCGATCAACAATCAAC
*
10358205 GGTCAATGGTCGGTCAACAATCAAC
1 GGTCAATGGTCGATCAACAATCAAC
*
10358230 GGTGAATGGTC
1 GGTCAATGGTC
10358241 AACGACTGAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (25 bp):
GGTCAATGGTCGATCAACAATCAAC
Found at i:10359029 original size:17 final size:18
Alignment explanation
Indices: 10358988--10359033 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
10358978 GTAAAACGGT
10358988 CGACTGTTGACCGTTGATC
1 CGAC-GTTGACCGTTGATC
*
10359007 TG-CGTTGACCGTTGA-C
1 CGACGTTGACCGTTGATC
10359023 CGACGTTGACC
1 CGACGTTGACC
10359034 ACTGTTGACC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 2 0.08
17 20 0.83
18 1 0.04
19 1 0.04
ACGTcount: A:0.15, C:0.28, G:0.28, T:0.28
Consensus pattern (18 bp):
CGACGTTGACCGTTGATC
Found at i:10361395 original size:24 final size:24
Alignment explanation
Indices: 10361326--10361412 Score: 113
Period size: 24 Copynumber: 3.7 Consensus size: 24
10361316 TGAATTTTGT
*
10361326 TATGATACCTGACCTGGATTCTGA
1 TATGATACATGACCTGGATTCTGA
* * * *
10361350 TCTAATACA-AACATGGATTCTGA
1 TATGATACATGACCTGGATTCTGA
10361373 TATGATACATGACCTGGATTCTGA
1 TATGATACATGACCTGGATTCTGA
*
10361397 TATGATACTTGACCTG
1 TATGATACATGACCTG
10361413 AATTATGTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
23 19 0.37
24 33 0.63
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (24 bp):
TATGATACATGACCTGGATTCTGA
Found at i:10361426 original size:24 final size:24
Alignment explanation
Indices: 10361316--10361419 Score: 75
Period size: 24 Copynumber: 4.4 Consensus size: 24
10361306 ATTTCCGATT
* * *
10361316 TGAATTTTGTTATGATACCTGACC
1 TGAATTATGATATGATACATGACC
* * * * * *
10361340 TGGATTCTGATCTAATACA-AACA
1 TGAATTATGATATGATACATGACC
* *
10361363 TGGATTCTGATATGATACATGACC
1 TGAATTATGATATGATACATGACC
* * *
10361387 TGGATTCTGATATGATACTTGACC
1 TGAATTATGATATGATACATGACC
10361411 TGAATTATG
1 TGAATTATG
10361420 TTTTGATTTT
Statistics
Matches: 64, Mismatches: 15, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
23 19 0.30
24 45 0.70
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (24 bp):
TGAATTATGATATGATACATGACC
Found at i:10361574 original size:57 final size:57
Alignment explanation
Indices: 10361484--10361769 Score: 491
Period size: 57 Copynumber: 5.0 Consensus size: 57
10361474 ATTGGAGGAA
* *
10361484 GAATACTTGCAGGTTTCTCGGCTTTGTGCTGAGGGCCTTACTGTTCATGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGGGCCTTACTGTTCGTGACGGGGTT
* *
10361541 GAATACTTGCAGGTTCCTTGGCTTTGTGTTGAGGGCCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGGGCCTTACTGTTCGTGACGGGGTT
*
10361598 GAATACTTGCAGGTTCCTCGGCTTTGTGTTGAGGGCCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGGGCCTTACTGTTCGTGACGGGGTT
10361655 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGGGCCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGGGCCTTACTGTTCGTGACGGGGTT
* * * *
10361712 GAATACTTGCAGGTTCCTCAGATTTGTGCTCAGGGCCTTACTGTTCGTGACAGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGGGCCTTACTGTTCGTGACGGGGTT
10361769 G
1 G
10361770 TAAGGTTCTG
Statistics
Matches: 219, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 219 1.00
ACGTcount: A:0.14, C:0.20, G:0.32, T:0.35
Consensus pattern (57 bp):
GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGGGCCTTACTGTTCGTGACGGGGTT
Found at i:10367106 original size:2 final size:2
Alignment explanation
Indices: 10367095--10367141 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
10367085 GGTTCATACG
10367095 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10367136 AT AT AT
1 AT AT AT
10367142 TAAAAAATTG
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:10370155 original size:42 final size:41
Alignment explanation
Indices: 10370077--10370183 Score: 124
Period size: 42 Copynumber: 2.6 Consensus size: 41
10370067 ACCTGAAGGT
* * *
10370077 CTTACGGATGGCCCGAAGGACTTATCATCTTACTCGAAAGA
1 CTTACAGATGGCCCAAAGGACTTATCATCATACTCGAAAGA
* * *
10370118 CTTACAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGA
1 CTTACAGATGGCCCAAAGGACTT-ATCATCATACTCGAAAGA
** *
10370160 CTTAGTGATGGCCCAAAGAACTTA
1 CTTACAGATGGCCCAAAGGACTTA
10370184 CCAATTTGGG
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 20 0.37
42 34 0.63
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (41 bp):
CTTACAGATGGCCCAAAGGACTTATCATCATACTCGAAAGA
Found at i:10370351 original size:257 final size:257
Alignment explanation
Indices: 10369877--10370641 Score: 1129
Period size: 257 Copynumber: 3.0 Consensus size: 257
10369867 ATAACTCGAG
* * * * * *
10369877 GGATTTAATCATCATGCTCAAAAAACTTACTGATGGCCCGAAGGACTTACTAATTTTGGAAATAA
1 GGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCAAAGGACTTACCAATTTCGGAAATAG
*
10369942 TTTACTGGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAAATTCATTTTCT-AAAACA
66 TTTACT-GGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACA
* * *
10370006 TTAAATAAGAAACTTTGGAAATCACTTTCTCATTTTTTTGAAATTCATGTGAAAACATCCTACCT
130 TTAAATGAGAAACTTTGGAAATTACTTTCTCA-TTTTTTGAAATTCATGTGAAAACATCCTACCC
* *
10370071 GAAGGTCTTACGGATGGCCCGAAGGACTTATCATCTTACTCGAAAGACTTACAGATGACCCAAA
194 GAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAA
* * *
10370135 GGATTTAATCATCATGCTCGAAAGACTTAGTGATGGCCCAAAGAACTTACCAATTTGGGAAATAG
1 GGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCAAAGGACTTACCAATTTCGGAAATAG
* * *
10370200 TTTACTGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAGATTTTATTTTCTGAAAACAT
66 TTTACTGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACAT
* * ** *
10370265 TAAATGAGAAACTTTGGAAATTGCTTTTTCATTTTTCAAAATTCATGGGAAAACATCCTACCCGA
131 TAAATGAGAAACTTTGGAAATTACTTTCTCATTTTTTGAAATTCATGTGAAAACATCCTACCCGA
* * * *
10370330 AGGTCTTATTGATGTCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGATCCGAA
196 AGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAA
* * * * * *
10370392 TGATTTAATCATCATGTTTGAAAGACTTACTGATGACCCAAAGGACTGACCAATTTCAGAAATAG
1 GGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCAAAGGACTTACCAATTTCGGAAATAG
* * *
10370457 TTTACTGGTAAGAAACCTTGGAAATCATTTTCTTAC-TTTCAAATATTTCATTTTCTGAAAACAT
66 TTTACTGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACAT
*
10370521 TAAATGAGAAACTTTGGAAATTACTTTCTCATTTTTTGAAATTCATGTGAAAACATCTTACCCGA
131 TAAATGAGAAACTTTGGAAATTACTTTCTCATTTTTTGAAATTCATGTGAAAACATCCTACCCGA
* * *
10370586 AGGTCTTATGGATGGCCCGAAGGAGTTAATCATCATGCTCGAAAGACTTACTGATG
196 AGGTCTTATGGATGGCCCGAAGGACTT-ATCATCTTGCTCGAAAGACTTACAGATG
10370642 GCTCGAAGGA
Statistics
Matches: 454, Mismatches: 51, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
256 109 0.24
257 248 0.55
258 97 0.21
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (257 bp):
GGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCAAAGGACTTACCAATTTCGGAAATAG
TTTACTGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACAT
TAAATGAGAAACTTTGGAAATTACTTTCTCATTTTTTGAAATTCATGTGAAAACATCCTACCCGA
AGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCCAAA
Found at i:10385398 original size:90 final size:90
Alignment explanation
Indices: 10385245--10385430 Score: 354
Period size: 90 Copynumber: 2.1 Consensus size: 90
10385235 AGGTACGTTA
*
10385245 AATATGAGCTATGATGTAATGAAAGTATGTGATCATTGTTAGTGCATATATGACATGATATGATG
1 AATATGAGCTATGATGTAATGAAAGTATGTGATCATTGTTAGTGCATATATGACATGATATGATA
10385310 GTTATGAATCTTGGTGTTTTGGAAG
66 GTTATGAATCTTGGTGTTTTGGAAG
*
10385335 AATATGAGCTATGATGTAATGAAAGTATGTGATCATTGTTAGTGCATATATGGCATGATATGATA
1 AATATGAGCTATGATGTAATGAAAGTATGTGATCATTGTTAGTGCATATATGACATGATATGATA
10385400 GTTATGAATCTTGGTGTTTTGGAAG
66 GTTATGAATCTTGGTGTTTTGGAAG
10385425 AATATG
1 AATATG
10385431 TTTCATGGAT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 94 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (90 bp):
AATATGAGCTATGATGTAATGAAAGTATGTGATCATTGTTAGTGCATATATGACATGATATGATA
GTTATGAATCTTGGTGTTTTGGAAG
Found at i:10385430 original size:44 final size:44
Alignment explanation
Indices: 10385292--10385430 Score: 108
Period size: 44 Copynumber: 3.1 Consensus size: 44
10385282 GTTAGTGCAT
* *
10385292 ATATGACATGATATGATGGTTATGAATCTTGGTGTTTTGGAAGA
1 ATATGGCATGATATGATAGTTATGAATCTTGGTGTTTTGGAAGA
* * * * * *
10385336 ATATGAGCTATGATGTAATGAAAG-TATGTGATCAT--TG-TTAGTGCA-T
1 ATATG-GC-ATGA--T-ATGATAGTTATG-AATCTTGGTGTTTTG-GAAGA
10385382 ATATGGCATGATATGATAGTTATGAATCTTGGTGTTTTGGAAGA
1 ATATGGCATGATATGATAGTTATGAATCTTGGTGTTTTGGAAGA
10385426 ATATG
1 ATATG
10385431 TTTCATGGAT
Statistics
Matches: 69, Mismatches: 14, Indels: 24
0.64 0.13 0.22
Matches are distributed among these distances:
41 10 0.14
42 5 0.07
43 4 0.06
44 17 0.25
45 3 0.04
46 12 0.17
47 4 0.06
48 5 0.07
49 9 0.13
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.38
Consensus pattern (44 bp):
ATATGGCATGATATGATAGTTATGAATCTTGGTGTTTTGGAAGA
Found at i:10386866 original size:44 final size:44
Alignment explanation
Indices: 10386816--10386904 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
10386806 TCTTACCGAA
*
10386816 ATAAATGAAAATACATAACGGTGCATTATTGGAAGAAATGTGCC
1 ATAAATGAAAATACATAACGGTGCATTATTGGAAGAAAGGTGCC
* *
10386860 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATACATAACGGTGCATTATTGGAAGAAAGGTGCC
10386904 A
1 A
10386905 CTCATGGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (44 bp):
ATAAATGAAAATACATAACGGTGCATTATTGGAAGAAAGGTGCC
Found at i:10393662 original size:44 final size:43
Alignment explanation
Indices: 10393613--10393742 Score: 188
Period size: 44 Copynumber: 3.0 Consensus size: 43
10393603 TACCAAAATA
10393613 AATGAAAATGCATAATGGAGCATTATTGGCAGAAAGGTACCATG
1 AATGAAAATGCATAA-GGAGCATTATTGGCAGAAAGGTACCATG
* * * *
10393657 AATGAAAATGCATAACGATGCATTATTGGTAGAAAGGTGCCATT
1 AATGAAAATGCATAAGGA-GCATTATTGGCAGAAAGGTACCATG
*
10393701 AATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTACCA
1 AATGAAAATGCATAA-GGAGCATTATTGGCAGAAAGGTACCA
10393743 CCCATGGTAT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.03
44 73 0.96
45 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (43 bp):
AATGAAAATGCATAAGGAGCATTATTGGCAGAAAGGTACCATG
Found at i:10395935 original size:21 final size:21
Alignment explanation
Indices: 10395906--10395966 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
10395896 ATTTTCTAGT
10395906 AAAAGGATCAATCCATTTTGA
1 AAAAGGATCAATCCATTTTGA
* * *
10395927 AAAATGATCGATCCCTTTTGA
1 AAAAGGATCAATCCATTTTGA
* * *
10395948 AAATGGATCCATCCCTTTT
1 AAAAGGATCAATCCATTTT
10395967 AGAAGTTTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (21 bp):
AAAAGGATCAATCCATTTTGA
Found at i:10398762 original size:18 final size:18
Alignment explanation
Indices: 10398741--10398782 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
10398731 TGTAAATTTT
10398741 ATTTTTGAACTTAATCGA
1 ATTTTTGAACTTAATCGA
* * *
10398759 ATTTGTGGACTTAATTGA
1 ATTTTTGAACTTAATCGA
10398777 ATTTTT
1 ATTTTT
10398783 CAAAAATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (18 bp):
ATTTTTGAACTTAATCGA
Found at i:10398886 original size:20 final size:20
Alignment explanation
Indices: 10398861--10398936 Score: 53
Period size: 20 Copynumber: 3.7 Consensus size: 20
10398851 TATTTTGGCC
* *
10398861 CAAAAGATTGATCCCCTTAG
1 CAAAAGATCGATCCCCTTAA
* * * *
10398881 CAAAAGGATCAATCTCTTTGAC
1 CAAAA-GATCGATCCCCTT-AA
* *
10398903 CAAATGATTGATCCCCTTAA
1 CAAAAGATCGATCCCCTTAA
*
10398923 CAAAGGATCGATCC
1 CAAAAGATCGATCC
10398937 ATTGGATTAC
Statistics
Matches: 41, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
20 18 0.44
21 18 0.44
22 5 0.12
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (20 bp):
CAAAAGATCGATCCCCTTAA
Found at i:10399024 original size:22 final size:22
Alignment explanation
Indices: 10398998--10399046 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
10398988 TGAGGAAAAT
10398998 AATCGACCCCTTCACCAAAAGG
1 AATCGACCCCTTCACCAAAAGG
10399020 AATCGACCCCTTCACCAAAAGG
1 AATCGACCCCTTCACCAAAAGG
10399042 -ATCGA
1 AATCGA
10399047 TCCGTCTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 5 0.19
22 22 0.81
ACGTcount: A:0.37, C:0.35, G:0.14, T:0.14
Consensus pattern (22 bp):
AATCGACCCCTTCACCAAAAGG
Found at i:10400235 original size:12 final size:12
Alignment explanation
Indices: 10400220--10400251 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10400210 GGAAGAGCAA
10400220 AAAGAAGAAAAG
1 AAAGAAGAAAAG
*
10400232 AAAGAAGAGAAG
1 AAAGAAGAAAAG
10400244 AAAGAAGA
1 AAAGAAGA
10400252 CAAAAGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
AAAGAAGAAAAG
Found at i:10406878 original size:20 final size:20
Alignment explanation
Indices: 10406841--10406879 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10406831 AGATTGAGTG
* * *
10406841 GATTTTGATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
10406861 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
10406880 AGTTTAGAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:10407057 original size:21 final size:21
Alignment explanation
Indices: 10407031--10407094 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 21
10407021 AGAACCCCAG
*
10407031 GGGGGGTATCGATTCCCCTTT
1 GGGGGGAATCGATTCCCCTTT
* *
10407052 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGATTCCCCTT--T
* *
10407075 AGGGGGAATCGGTTCCCCTT
1 GGGGGGAATCGATTCCCCTT
10407095 CAAAGGGGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 18 0.49
23 19 0.51
ACGTcount: A:0.14, C:0.25, G:0.34, T:0.27
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTTT
Found at i:10407079 original size:23 final size:23
Alignment explanation
Indices: 10407053--10407137 Score: 161
Period size: 23 Copynumber: 3.7 Consensus size: 23
10407043 TTCCCCTTTG
10407053 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
10407076 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
*
10407099 GGGGGAATCAGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
10407122 GGGGGAATCGGTTCCC
1 GGGGGAATCGGTTCCC
10407138 TCAGGGGGGG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (23 bp):
GGGGGAATCGGTTCCCCTTCAAA
Found at i:10407151 original size:20 final size:20
Alignment explanation
Indices: 10407031--10407159 Score: 62
Period size: 23 Copynumber: 6.0 Consensus size: 20
10407021 AGAACCCCAG
* **
10407031 GGGGGGTATCGATTCCCCTTT
1 GGGGGGAATCGATT-CCCTCA
*
10407052 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGATT-CCC-TC-A
* *
10407075 AGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGATT-CCC-TC-A
*
10407098 AGGGGGAATC-AGTTCCCCTTCAA
1 GGGGGGAATCGA-TT-CCC-TC-A
* *
10407121 AGGGGGAATCGGTTCCCTCA
1 GGGGGGAATCGATTCCCTCA
*
10407141 GGGGGGGATCGATTCCCTC
1 GGGGGGAATCGATTCCCTC
10407160 TGTACCAAAA
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
20 17 0.18
21 18 0.19
22 4 0.04
23 55 0.59
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (20 bp):
GGGGGGAATCGATTCCCTCA
Found at i:10414338 original size:21 final size:21
Alignment explanation
Indices: 10414312--10414351 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10414302 CAGAACCCCA
*
10414312 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
10414333 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
10414352 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:10414387 original size:21 final size:21
Alignment explanation
Indices: 10414333--10414395 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
10414323 ATTCCCCTGT
10414333 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGGTT-CCC-TCAA
* *
10414356 AGGGGGAATCGGTTCCCTCAG
1 GGGGGGAATCGGTTCCCTCAA
* *
10414377 GGGGGGGATCGATTCCCTC
1 GGGGGGAATCGGTTCCCTC
10414396 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 19 0.54
22 3 0.09
23 13 0.37
ACGTcount: A:0.16, C:0.25, G:0.38, T:0.21
Consensus pattern (21 bp):
GGGGGGAATCGGTTCCCTCAA
Found at i:10426419 original size:21 final size:21
Alignment explanation
Indices: 10426393--10426462 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
10426383 TGCATTTCGG
10426393 GTTGCGATAATTGAAAATCGC
1 GTTGCGATAATTGAAAATCGC
* ** **
10426414 GTTGCGAT-TTTCCATTTCGC
1 GTTGCGATAATTGAAAATCGC
*
10426434 GTTGCGATAGTTGAAAATCGC
1 GTTGCGATAATTGAAAATCGC
10426455 GTTGCGAT
1 GTTGCGAT
10426463 TTTTCATTTC
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 15 0.39
21 23 0.61
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (21 bp):
GTTGCGATAATTGAAAATCGC
Found at i:10426435 original size:20 final size:20
Alignment explanation
Indices: 10426410--10426482 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
10426400 TAATTGAAAA
10426410 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
10426430 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
*
10426451 TCGCGTTGCGATTTTTCATT
1 TCGCGTTGCGATTTTCCATT
10426471 TCGCGTTGCGAT
1 TCGCGTTGCGAT
10426483 AATCTACAGT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
20 27 0.64
21 15 0.36
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.40
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:10426508 original size:42 final size:41
Alignment explanation
Indices: 10426385--10426485 Score: 175
Period size: 41 Copynumber: 2.5 Consensus size: 41
10426375 ATTCGCGTTG
* *
10426385 CATTTCGGGTTGCGATAATTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAATTGAAAATCGCGTTGCGATTTTT
*
10426426 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTT
1 CATTTCGCGTTGCGATAATTGAAAATCGCGTTGCGATTTTT
10426467 CATTTCGCGTTGCGATAAT
1 CATTTCGCGTTGCGATAAT
10426486 CTACAGTTGT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.38
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAATTGAAAATCGCGTTGCGATTTTT
Found at i:10426527 original size:13 final size:13
Alignment explanation
Indices: 10426509--10426533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10426499 TGCGATTTTT
10426509 CAAATTCGTTGTC
1 CAAATTCGTTGTC
10426522 CAAATTCGTTGT
1 CAAATTCGTTGT
10426534 GATAGTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (13 bp):
CAAATTCGTTGTC
Found at i:10426642 original size:5 final size:5
Alignment explanation
Indices: 10426620--10426664 Score: 72
Period size: 5 Copynumber: 8.6 Consensus size: 5
10426610 CGTATTACCA
10426620 CGACC ACGACC ACGACC CGACC CGACC CGACC CGACC CGACC CGA
1 CGACC -CGACC -CGACC CGACC CGACC CGACC CGACC CGACC CGA
10426665 GACGAGACGA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
5 28 0.72
6 11 0.28
ACGTcount: A:0.24, C:0.56, G:0.20, T:0.00
Consensus pattern (5 bp):
CGACC
Found at i:10427509 original size:22 final size:22
Alignment explanation
Indices: 10427484--10427525 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10427474 AGGAGTTTTT
* *
10427484 TGATTTAATTCCAGGGGTTACA
1 TGATATAATTCCAGGAGTTACA
*
10427506 TGATATAATTTCAGGAGTTA
1 TGATATAATTCCAGGAGTTA
10427526 TAACAGCTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (22 bp):
TGATATAATTCCAGGAGTTACA
Found at i:10432957 original size:22 final size:22
Alignment explanation
Indices: 10432932--10432991 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
10432922 TAATATCAAG
* *
10432932 AGTTACAGGAGTTATTTGATTT
1 AGTTACAGGAGTTATATGATAT
* * *
10432954 AGTTCCAGGGGTTACATGATAT
1 AGTTACAGGAGTTATATGATAT
* *
10432976 AATTTCAGGAGTTATA
1 AGTTACAGGAGTTATA
10432992 ACAGTTGAAT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.38
Consensus pattern (22 bp):
AGTTACAGGAGTTATATGATAT
Found at i:10442218 original size:3 final size:3
Alignment explanation
Indices: 10442210--10442234 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10442200 GGGGGCAAAT
10442210 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
10442235 ATAAATGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:10442664 original size:8 final size:7
Alignment explanation
Indices: 10442648--10442751 Score: 54
Period size: 7 Copynumber: 14.4 Consensus size: 7
10442638 AAAAGAATAG
10442648 AAAAAGA
1 AAAAAGA
*
10442655 AAAAAGG
1 AAAAAGA
*
10442662 AAAAA-T
1 AAAAAGA
*
10442668 ATAAA-A
1 AAAAAGA
10442674 AAAAAGA
1 AAAAAGA
10442681 GAAAAAGA
1 -AAAAAGA
10442689 AATAAAGA
1 AA-AAAGA
10442697 AATAAA-A
1 AA-AAAGA
10442704 AGAAAAGA
1 A-AAAAGA
10442712 AAAGAA-A
1 AAA-AAGA
10442719 AGAAAAGA
1 A-AAAAGA
* * *
10442727 GAGACGA
1 AAAAAGA
10442734 AAGAAAGA
1 AA-AAAGA
*
10442742 AGAAAGA
1 AAAAAGA
10442749 AAA
1 AAA
10442752 TAGATCTGAT
Statistics
Matches: 75, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
6 8 0.11
7 37 0.49
8 30 0.40
ACGTcount: A:0.77, C:0.01, G:0.18, T:0.04
Consensus pattern (7 bp):
AAAAAGA
Found at i:10442703 original size:26 final size:25
Alignment explanation
Indices: 10442638--10442709 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
10442628 TAACACAGAG
*
10442638 AAAAGAATAGAAAAAGAAAAAAGGAA
1 AAAAGAA-AAAAAAAGAAAAAAGGAA
*
10442664 AAATATAAAAAAAAAGAGAAAAA-GAA
1 AAA-AGAAAAAAAAAGA-AAAAAGGAA
*
10442690 ATAAAGAAATAAAAAGAAAA
1 A-AAAGAAAAAAAAAGAAAA
10442710 GAAAAGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 3 0.08
26 26 0.67
27 10 0.26
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (25 bp):
AAAAGAAAAAAAAAGAAAAAAGGAA
Found at i:10442711 original size:5 final size:5
Alignment explanation
Indices: 10442692--10442726 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
10442682 AAAAAGAAAT
10442692 AAAGA AATA-A AAAGA AAAGA AAAGA AAAGA AAAGA
1 AAAGA AA-AGA AAAGA AAAGA AAAGA AAAGA AAAGA
10442727 GAGACGAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 1 0.04
5 26 0.93
6 1 0.04
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:10442712 original size:15 final size:14
Alignment explanation
Indices: 10442649--10442726 Score: 56
Period size: 15 Copynumber: 5.4 Consensus size: 14
10442639 AAAGAATAGA
*
10442649 AAAAG-AAAAAAGG
1 AAAAGAAAAAAAAG
10442662 AAAA-ATATAAAAAA-
1 AAAAGA-A-AAAAAAG
10442676 AAAGAGAAAAAGAAA-
1 AAA-AGAAAAA-AAAG
*
10442691 TAAAGAAATAAAAAG
1 AAAAGAAA-AAAAAG
10442706 AAAAGAAAAGAAAAG
1 AAAAGAAAA-AAAAG
10442721 AAAAGA
1 AAAAGA
10442727 GAGACGAAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
13 4 0.08
14 16 0.30
15 32 0.60
16 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (14 bp):
AAAAGAAAAAAAAG
Found at i:10442718 original size:34 final size:35
Alignment explanation
Indices: 10442636--10442724 Score: 100
Period size: 34 Copynumber: 2.6 Consensus size: 35
10442626 GATAACACAG
*
10442636 AGAAAAGAATAGAAAAAGAAAAAAGGAAAAATATA
1 AGAAAAGAAAAGAAAAAGAAAAAAGGAAAAATATA
10442671 A-AAAA-AAAGAGAAAAAGAAATAAA-GAAATAA-A-A
1 AGAAAAGAAA-AGAAAAAGAAA-AAAGGAAA-AATATA
10442704 AGAAAAGAAAAG-AAAAGAAAA
1 AGAAAAGAAAAGAAAAAGAAAA
10442725 GAGAGACGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
32 1 0.02
33 12 0.25
34 26 0.54
35 9 0.19
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.06
Consensus pattern (35 bp):
AGAAAAGAAAAGAAAAAGAAAAAAGGAAAAATATA
Found at i:10442750 original size:15 final size:14
Alignment explanation
Indices: 10442639--10442750 Score: 52
Period size: 16 Copynumber: 7.5 Consensus size: 14
10442629 AACACAGAGA
10442639 AAAGAATAGAAAAAG
1 AAAGAA-AGAAAAAG
*
10442654 AAA-AAAGGAAAAAT
1 AAAGAAA-GAAAAAG
*
10442668 ATA-AAA-AAAAAG
1 AAAGAAAGAAAAAG
10442680 AGAA-AAAGAAATAAAG
1 A-AAGAAAG-AA-AAAG
* *
10442696 AAATAAAAAGAAAAG
1 AAAGAAAGA-AAAAG
10442711 AAAAGAAAAGAAAAGAG
1 -AAAG-AAAGAAAA-AG
*
10442728 AGACGAAAGAAAGAAG
1 A-AAGAAAGAAA-AAG
10442744 AAAGAAA
1 AAAGAAA
10442751 ATAGATCTGA
Statistics
Matches: 76, Mismatches: 9, Indels: 24
0.70 0.08 0.22
Matches are distributed among these distances:
12 6 0.08
13 5 0.07
14 13 0.17
15 17 0.22
16 26 0.34
17 9 0.12
ACGTcount: A:0.76, C:0.01, G:0.19, T:0.04
Consensus pattern (14 bp):
AAAGAAAGAAAAAG
Found at i:10444982 original size:90 final size:90
Alignment explanation
Indices: 10444829--10445460 Score: 901
Period size: 90 Copynumber: 7.1 Consensus size: 90
10444819 GTTTTCAAAT
* *
10444829 GAAACTAAACCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCAGGCCATCCATAAGACCTTCAGTG
1 GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
10444894 CAGGATGTTTTCAAATGATATTTTA
66 CAGGATGTTTTCAAATGATATTTTA
* * * * * * *
10444919 GAAACTAAGCCATCGAGGGTTTCATGATTTGTAAGTCCTTTGGGTCATCTATAAGATCTTCAGTG
1 GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
10444984 CAGGATGTTTT--AA--A-A---T-
66 CAGGATGTTTTCAAATGATATTTTA
* * *
10445000 GAAACTAAGCCTTTGGGGGTTTCTTGATTTGTAATTCCTTCAGGCCATCCATAAGACCTTCAGTG
1 GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
*
10445065 TAGGATGTTTTCAAATGATATTTTA
66 CAGGATGTTTTCAAATGATATTTTA
10445090 GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
1 GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
* * *
10445155 AAAGATGTTTTCAAATGAGATTTTA
66 CAGGATGTTTTCAAATGATATTTTA
* * * * *
10445180 GAAA-TAAAACCTTCGAGGGTTTCTTGATTTGTAGGTTCTTCGGACCATCCATAAGACCTTCAGT
1 GAAACT-AAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGT
*
10445244 GCAGGATGTTTACAAATGATATTTTA
65 GCAGGATGTTTTCAAATGATATTTTA
10445270 GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
1 GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
* *
10445335 CAGGATGTTTTCAAATGAGATTGTA
66 CAGGATGTTTTCAAATGATATTTTA
* * * *
10445360 GAAACTAAGCCTTCGAGAGTTT-TTGATTTGTAAGTCCTTCGGGTCATCCATAAGACCTTCAATG
1 GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
*
10445424 CAGGATGTTTTCAATTGAGT-TTTTA
66 CAGGATGTTTTCAAATGA-TATTTTA
10445449 GAAACTAAGCCT
1 GAAACTAAGCCT
10445461 GATTTTCAAG
Statistics
Matches: 480, Mismatches: 50, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
81 65 0.14
82 1 0.00
83 2 0.00
85 2 0.00
86 2 0.00
88 2 0.00
89 75 0.16
90 330 0.69
91 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (90 bp):
GAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTG
CAGGATGTTTTCAAATGATATTTTA
Found at i:10445082 original size:171 final size:176
Alignment explanation
Indices: 10444761--10445460 Score: 915
Period size: 171 Copynumber: 4.0 Consensus size: 176
10444751 TTGATTTTCG
* * * ** * *
10444761 GGGGGTTTCTTGATTTATTAAGTCTTTTGGGCCATTTATAAGACCTTCAGTGTAGGATGTTTT-C
1 GGGGGTTTCTTGATTT-GTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTAA
*
10444825 A-A-A-T-GAAACTAAACCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCAGGCCATCCATAAGAC
65 AGAGATTAGAAACTAAACCTTCGAGGGTTTCTTGATTTGTAAGTCCTTCAGGCCATCCATAAGAC
*
10444886 CTTCAGTGCAGGATGTTTTCAAATGATATTTTAGAAACTAAGCCATC
130 CTTCAGTGCAGGATGTTTTCAAATGATATTTTAGAAACTAAGCCTTC
* * * * * *
10444933 GAGGGTTTCATGATTTGTAAGTCCTTTGGGTCATCTATAAGATCTTCAGTGCAGGATGTTTT-AA
1 GGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTAAA
* * * *
10444997 -A-A-T-GAAACTAAGCCTTTGGGGGTTTCTTGATTTGTAATTCCTTCAGGCCATCCATAAGACC
66 GAGATTAGAAACTAAACCTTCGAGGGTTTCTTGATTTGTAAGTCCTTCAGGCCATCCATAAGACC
*
10445058 TTCAGTGTAGGATGTTTTCAAATGATATTTTAGAAACTAAGCCTTC
131 TTCAGTGCAGGATGTTTTCAAATGATATTTTAGAAACTAAGCCTTC
* *
10445104 GGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGAAAGATGTTTTCAA
1 GGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTT-AA
* *
10445169 ATGAGATTTTAGAAA-TAAAACCTTCGAGGGTTTCTTGATTTGTAGGTTCTTC-GGACCATCCAT
65 A-GAGA--TTAGAAACT-AAACCTTCGAGGGTTTCTTGATTTGTAAGTCCTTCAGG-CCATCCAT
*
10445232 AAGACCTTCAGTGCAGGATGTTTACAAATGATATTTTAGAAACTAAGCCTTC
125 AAGACCTTCAGTGCAGGATGTTTTCAAATGATATTTTAGAAACTAAGCCTTC
10445284 GGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAA
1 GGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTT-AA
* * * *
10445349 ATGAGATTGTAGAAACTAAGCCTTCGAGAGTTT-TTGATTTGTAAGTCCTTCGGGTCATCCATAA
65 A-GAGA-T-TAGAAACTAAACCTTCGAGGGTTTCTTGATTTGTAAGTCCTTCAGGCCATCCATAA
* *
10445413 GACCTTCAATGCAGGATGTTTTCAATTGAGT-TTTTAGAAACTAAGCCT
127 GACCTTCAGTGCAGGATGTTTTCAAATGA-TATTTTAGAAACTAAGCCT
10445461 GATTTTCAAG
Statistics
Matches: 473, Mismatches: 40, Indels: 23
0.88 0.07 0.04
Matches are distributed among these distances:
171 197 0.42
172 14 0.03
173 2 0.00
175 1 0.00
176 1 0.00
179 74 0.16
180 183 0.39
181 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.35
Consensus pattern (176 bp):
GGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTAAA
GAGATTAGAAACTAAACCTTCGAGGGTTTCTTGATTTGTAAGTCCTTCAGGCCATCCATAAGACC
TTCAGTGCAGGATGTTTTCAAATGATATTTTAGAAACTAAGCCTTC
Found at i:10445581 original size:36 final size:36
Alignment explanation
Indices: 10445520--10445591 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
10445510 ATAATCTTTA
* * *
10445520 CTCAAAACAAGTTTTATCTCTTTTGAGACAATTTTT
1 CTCAAAACAAATTTCATCTCGTTTGAGACAATTTTT
* * *
10445556 CTCAAAACAAATTTCGTCTCGTTTGATACATTTTTT
1 CTCAAAACAAATTTCATCTCGTTTGAGACAATTTTT
10445592 AATTGAAACA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.44
Consensus pattern (36 bp):
CTCAAAACAAATTTCATCTCGTTTGAGACAATTTTT
Found at i:10445689 original size:36 final size:34
Alignment explanation
Indices: 10445617--10445701 Score: 125
Period size: 34 Copynumber: 2.4 Consensus size: 34
10445607 CTTTGAGATT
* *
10445617 GTTTCCCTTGAAACAAGTTTTGTCTCTTGAGACA
1 GTTTCACTTGAAACAAATTTTGTCTCTTGAGACA
10445651 GTTTCACTTGAAACAAATTTTGTCTCGCTTGAGACA
1 GTTTCACTTGAAACAAATTTTGTCT--CTTGAGACA
*
10445687 GTTTCTCTTGAAACA
1 GTTTCACTTGAAACA
10445702 GAAAATCATT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
34 23 0.50
36 23 0.50
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (34 bp):
GTTTCACTTGAAACAAATTTTGTCTCTTGAGACA
Found at i:10445739 original size:67 final size:67
Alignment explanation
Indices: 10445643--10445768 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 67
10445633 GTTTTGTCTC
10445643 TTGAGACAGTTTCACTTGAAACAAATTTTGTCTCGCTTGAGACAG-TTTCTCTTGAAACAGAAAA
1 TTGAGACAGTTTCACTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTTC-CTTGAAACAGAAAA
10445707 TCA
65 TCA
* * * *
10445710 TTGAGATC-GTTTCCCTTGAAACTAGTTTTGTCTCTCTTGAGACAGTTTTCCTTGAAACA
1 TTGAGA-CAGTTTCACTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTTCCTTGAAACA
10445769 CCGATCTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
67 48 0.91
68 5 0.09
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (67 bp):
TTGAGACAGTTTCACTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTTCCTTGAAACAGAAAAT
CA
Found at i:10445763 original size:36 final size:36
Alignment explanation
Indices: 10445617--10445768 Score: 117
Period size: 36 Copynumber: 4.4 Consensus size: 36
10445607 CTTTGAGATT
*
10445617 GTTTCCCTTGAAACAAGTTTTG--TCTCTTGAGACA
1 GTTTTCCTTGAAACAAGTTTTGTCTCTCTTGAGACA
* *
10445651 G-TTTCACTTGAAACAAATTTTGTCTCGCTTGAGACA
1 GTTTTC-CTTGAAACAAGTTTTGTCTCTCTTGAGACA
**** *
10445687 G-TTTCTCTTGAAAC-AG---AAAATC-ATTGAGATC-
1 GTTTTC-CTTGAAACAAGTTTTGTCTCTCTTGAGA-CA
* *
10445718 GTTTCCCTTGAAACTAGTTTTGTCTCTCTTGAGACA
1 GTTTTCCTTGAAACAAGTTTTGTCTCTCTTGAGACA
10445754 GTTTTCCTTGAAACA
1 GTTTTCCTTGAAACA
10445769 CCGATCTTTT
Statistics
Matches: 89, Mismatches: 18, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
31 15 0.17
32 8 0.09
33 3 0.03
34 16 0.18
35 4 0.04
36 43 0.48
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (36 bp):
GTTTTCCTTGAAACAAGTTTTGTCTCTCTTGAGACA
Found at i:10446401 original size:91 final size:91
Alignment explanation
Indices: 10446236--10446963 Score: 1201
Period size: 91 Copynumber: 8.0 Consensus size: 91
10446226 GATAAACCAA
* * * *
10446236 TCAATATTTCCAGTGGAGAGTTCTTAATGAGAAGAACTCATCCAAAGAGGGAGAATAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
10446301 ATGAGAAGAACTTGTTCAACCTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGC
* *
10446327 TCAACATTTTCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAG-AGTAAGTTCAC
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAG-AAGTTCAT
10446391 AATGAGAAGAACTTGTTCAACCTTGGC
65 AATGAGAAGAACTTGTTCAACCTTGGC
* *
10446418 T-TACTATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCAT
1 TCAAC-ATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCAT
*
10446482 AATGAGAATAACTTGTTCAACCTTGGC
65 AATGAGAAGAACTTGTTCAACCTTGGC
*
10446509 TCAACATTTCCAGTGGAGAGTTCATTATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
10446574 ATGAGAAGAACTTGTTCAACCTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGC
* * * * * *
10446600 TTAACATTTCCAGTAGAGAGATCATAATGTGAATAATTCATCCAATGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
10446665 ATGAGAAGAACTTGTTCAACCTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGC
*
10446691 TCAACATTTCCAGTGGAGAGTTCATAATGAGAATAACTCATCCAATGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
*
10446756 ATGAGAAGAACTTGCTCAACCTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGC
* *
10446782 TCAACATTTCCAGTGGAGAGTTCATAATGACAAGAACTCATCCAATGAGGGAGAATAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
10446847 ATGAGAAGAACTTGTTCAACCTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGC
* *
10446873 T-AAGCATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCGTCCGAAAGAGGGAGAAGAAGTTCA
1 TCAA-CATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCC-AATGAGGGAGAAGAAGTTCA
10446937 TAATGAGAAGAACTTGTTCAACCTTGG
64 TAATGAGAAGAACTTGTTCAACCTTGG
10446964 TTCGAGTCCA
Statistics
Matches: 595, Mismatches: 36, Indels: 11
0.93 0.06 0.02
Matches are distributed among these distances:
90 5 0.01
91 541 0.91
92 49 0.08
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (91 bp):
TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTGGC
Found at i:10447224 original size:118 final size:118
Alignment explanation
Indices: 10446879--10447224 Score: 532
Period size: 119 Copynumber: 2.9 Consensus size: 118
10446869 TGGCTAAGCA
*
10446879 TTTCCAGTGGAGAGTTCATAATGAGAAGAACTCGTCCGAAAGAGGGAGAAGAAGTTCATAATGAG
1 TTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCG-AAGAGGGAGAAGAAGTTCATAATGAG
*
10446944 AAGAACTTGTTCAACCTTGGTTCGAGTCCATCACAGAAGGAGGTGAACCAACAT
65 AAGAACTTGTTCAACCTTGGTTCGATTCCATCACAGAAGGAGGTGAACCAACAT
*
10446998 TTTCTAGTGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGAG
1 TTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGA-AGAGGGAGAAGAAGTTCATAATGAG
* * * *
10447063 AAGAACTTCTTCAAACTTGGTTCGATTCCATCACAGAAGGAGGTGGATCAACAT
65 AAGAACTTGTTCAACCTTGGTTCGATTCCATCACAGAAGGAGGTGAACCAACAT
* * * *
10447117 TTTCCACTAGAGAGTTCAT-ATTATGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATAATGAG
1 TTTCCAGTGGAGAGTTCATAATGA-GAAGAACTCATCCGAAGAGGGAGAAGAAGTTCATAATGAG
* * *
10447181 AAGAACTTGTCCAACCTTGGTTCGATTCTATCACAGAATGAGGT
65 AAGAACTTGTTCAACCTTGGTTCGATTCCATCACAGAAGGAGGT
10447225 AGAATAGCAC
Statistics
Matches: 208, Mismatches: 17, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
118 67 0.32
119 141 0.68
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (118 bp):
TTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGAAGAGGGAGAAGAAGTTCATAATGAGA
AGAACTTGTTCAACCTTGGTTCGATTCCATCACAGAAGGAGGTGAACCAACAT
Found at i:10447435 original size:127 final size:127
Alignment explanation
Indices: 10447202--10447446 Score: 393
Period size: 127 Copynumber: 1.9 Consensus size: 127
10447192 CAACCTTGGT
* *
10447202 TCGATTCTATCACAGAATGAGGTAGAATAGCACCAACATCTCGTTCGATTCCATCACAGAAGGTG
1 TCGATTCTATCACAGAAGGAGGTAGAATAGCACCAACATCTCGTTCGATTCCATCACAGAAGGAG
* *
10447267 ATGGATCAACATTTTTATTTTTGCTCAAATCCATCGTAGAAGGAGTTGGATCAACTTTTTGC
66 ATGGATCAACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACTTTTTGC
* *
10447329 TCGATTCTATCACAGAAGGAGGTAGATTAGCACCAGCATCTCGTTCGATTCCATCACAGAAGGA-
1 TCGATTCTATCACAGAAGGAGGTAGAATAGCACCAACATCTCGTTCGATTCCATCACAGAAGGAG
* * *
10447393 AGTGGATCGATATTTTTATTTTCGCTCAAATCTATCGCAGAAGGAGTTGGATCA
66 A-TGGATCAACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA
10447447 GCGTCAACTG
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
126 1 0.01
127 107 0.99
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (127 bp):
TCGATTCTATCACAGAAGGAGGTAGAATAGCACCAACATCTCGTTCGATTCCATCACAGAAGGAG
ATGGATCAACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACTTTTTGC
Done.