Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 51 of 89
Found at i:11486803 original size:20 final size:19
Alignment explanation
Indices: 11486778--11486818 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
11486768 TCGATAAATG
*
11486778 TTTACCGGTTACATTGTTAA
1 TTTACCGATTACATTG-TAA
*
11486798 TTTACCTATTACATTGTAA
1 TTTACCGATTACATTGTAA
11486817 TT
1 TT
11486819 ATCAGTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.49
Consensus pattern (19 bp):
TTTACCGATTACATTGTAA
Found at i:11486944 original size:199 final size:199
Alignment explanation
Indices: 11486511--11487082 Score: 715
Period size: 200 Copynumber: 2.9 Consensus size: 199
11486501 AAACACACGT
* * * * *
11486511 TATCGATACAAATTTAAAAAGTGTCGATACATTAAGTTGACCTATTTTCTAATTATACCGGT-AT
1 TATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATCGGTAAT
* * *
11486575 GTTTCTACTGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCAATGTCTATGGG
66 G-TTCTACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCAATGTTTTTGGG
* * *
11486640 ATCGATA-AATTTAATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCTTTCATTTTGGA
130 ATCGATACAATTT--TAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATTCATTCTCGA
11486704 CAACAAG
193 CAACAAG
* * ** * *
11486711 TATCGACACAAATTTAAAAAGTGTTGATACATTATGTAAACCTATTTTCTCGTAAAATCGATAAA
1 TATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATCGGT-AA
* * * * *
11486776 TGTT-TACCGGTTACATTGTTAATTTACCTATTACATTGTAATTATCAGTATCAATGTTTTTGGG
65 TGTTCTACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCAATGTTTTTGGG
* * *
11486840 ATTGATACAATTTTAAATTTATCGACACTTTATGCGTGCACCTTGTTTGGCATTCATTCTCGACA
130 ATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATTCATTCTCGACA
11486905 TA-AAG
195 -ACAAG
* **
11486910 TATCGACACAAATTTTAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAGCT-GGTATA
1 TATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATCGGTA-A
* * * * * *
11486974 T-TTCTATTGATTACATTGTAAAGTTACCCATTACATTATAATTATCGGTTTCAGTTTTTTTGGG
65 TGTTCTACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCAATGTTTTTGGG
* * *
11487038 ATCGATACAATTTCAAATGTATTGAAACTTTATGCGTGCACCTCG
130 ATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCG
11487083 ACCGGTATTC
Statistics
Matches: 315, Mismatches: 51, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
197 3 0.01
198 92 0.29
199 100 0.32
200 110 0.35
201 7 0.02
202 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (199 bp):
TATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATCGGTAAT
GTTCTACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCAATGTTTTTGGGA
TCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATTCATTCTCGACAA
CAAG
Found at i:11488565 original size:106 final size:106
Alignment explanation
Indices: 11488415--11488626 Score: 309
Period size: 106 Copynumber: 2.0 Consensus size: 106
11488405 TTCAATCTAA
* *
11488415 TCGATACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATTTCGAGACCAGTTTTGTCAT
1 TCGACACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATTTCGAGACCAGTTTTATCAT
* *
11488480 ATTTTTACCTGGTATATTGTTATGGATTGATACATTTTTAT
66 ATTTTTACCTGGTATATTGTTATAGATCGATACATTTTTAT
** * *
11488521 TCGACACTTTCAACATATAC-GGTATTGCTTTACCGGTTTTGTCATTTCGAGATCGGTTTTATCA
1 TCGACACTTTCAACATAT-CTGGTAGCGCTTTACCGGTTTTGTCATTTCGAGACCAGTTTTATCA
* **
11488585 TATTTTTACCTGTTATATTGTTATAGATCGATTTATTTTTAT
65 TATTTTTACCTGGTATATTGTTATAGATCGATACATTTTTAT
11488627 AAAGTATCGA
Statistics
Matches: 94, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
106 93 0.99
107 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.47
Consensus pattern (106 bp):
TCGACACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATTTCGAGACCAGTTTTATCAT
ATTTTTACCTGGTATATTGTTATAGATCGATACATTTTTAT
Found at i:11489259 original size:31 final size:31
Alignment explanation
Indices: 11489212--11489270 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
11489202 GGTCTCCACC
*
11489212 ATTATCGATCCGTTCAATTTTAGTCCCTAAT
1 ATTACCGATCCGTTCAATTTTAGTCCCTAAT
*
11489243 ATTACCGATCCTTTCAATTTTAGTCCCT
1 ATTACCGATCCGTTCAATTTTAGTCCCT
11489271 CAACCATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.24, C:0.25, G:0.08, T:0.42
Consensus pattern (31 bp):
ATTACCGATCCGTTCAATTTTAGTCCCTAAT
Found at i:11489635 original size:16 final size:16
Alignment explanation
Indices: 11489614--11489646 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
11489604 TTTATAAAAA
11489614 TTGTTTTCTTTTTCTT
1 TTGTTTTCTTTTTCTT
*
11489630 TTGTTTTTTTTTTCTT
1 TTGTTTTCTTTTTCTT
11489646 T
1 T
11489647 CTCTCATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (16 bp):
TTGTTTTCTTTTTCTT
Found at i:11497918 original size:68 final size:68
Alignment explanation
Indices: 11497582--11497909 Score: 458
Period size: 68 Copynumber: 4.8 Consensus size: 68
11497572 CGTTAAAAGA
* * * * *
11497582 TTTGAGTCCTAACTTTGCATATAACATAAAGGTGTCATTTATGTCAGTTAGATGAAAGGCTAAGT
1 TTTGAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGT
* *
11497647 TCT
66 GCC
* *
11497650 TTTGAGGCTTAACTATGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGT
1 TTTGAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGT
11497715 GCC
66 GCC
* * * * *
11497718 TTTAAGGCCTAACTGTGTATATGACAGAAAGGTGTAATTTAAGCCAGTTAGATGAAAGGCTACGT
1 TTTGAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGT
11497783 GCC
66 GCC
* * *
11497786 TTTGAGGCCTAACTGTGCATATGACAAAAATGTGTCATTTATGCTAGTTAGATGAAAGGCTAAGT
1 TTTGAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGT
11497851 GCC
66 GCC
** * * *
11497854 TTTGAGGCCTAGTTGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAA
1 TTTGAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
11497910 CGATTAAGTA
Statistics
Matches: 229, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
68 229 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (68 bp):
TTTGAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGT
GCC
Found at i:11498018 original size:80 final size:81
Alignment explanation
Indices: 11497867--11498076 Score: 296
Period size: 80 Copynumber: 2.6 Consensus size: 81
11497857 GAGGCCTAGT
*
11497867 TGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAGTAACGTTGAGTAAA
1 TGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAGTAACGTTGAGTAAA
* **
11497932 AGAATAATGGCCTAAC
66 AAAATAATAACCTAAC
* *
11497948 TGTGCATTTGATAGAAACGTGTCAATTATG-CAGTTAGATGAACGGTTAAGTACCGTTGAGTAAA
1 TGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAGTAACGTTGAGTAAA
* *
11498012 AAAATAATAATCTAGC
66 AAAATAATAACCTAAC
* * * * *
11498028 TGTGCATTTGACAGATAGGTGTTAATTATGCCAATTAGATAAACGGTTA
1 TGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTA
11498077 TACATTGTTG
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
80 69 0.61
81 45 0.39
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.30
Consensus pattern (81 bp):
TGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAGTAACGTTGAGTAAA
AAAATAATAACCTAAC
Found at i:11499090 original size:77 final size:77
Alignment explanation
Indices: 11498963--11499106 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 77
11498953 CACGGTTAAG
* * *
11498963 ACCAAAATGCCCTATTTATTTATCCATTGTTACTAATTGGTCTTAAACACTATTTTTAAATCATT
1 ACCAAAATGCCCTATTTATTCATCCATTATTACTAATTGGTCTTAAACACTATTTCTAAATCATT
11499028 TCCCCTTAAAGA
66 TCCCCTTAAAGA
* *
11499040 ACCAAAATGCCCTCTTTATTCATCTATTATTACTAATTGGTCTTAAACACTATTTCTAAATCATT
1 ACCAAAATGCCCTATTTATTCATCCATTATTACTAATTGGTCTTAAACACTATTTCTAAATCATT
11499105 TC
66 TC
11499107 TTATCCTTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
77 62 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.41
Consensus pattern (77 bp):
ACCAAAATGCCCTATTTATTCATCCATTATTACTAATTGGTCTTAAACACTATTTCTAAATCATT
TCCCCTTAAAGA
Found at i:11499338 original size:11 final size:12
Alignment explanation
Indices: 11499315--11499343 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
11499305 TTGAATAATT
11499315 ACTAAATTAGAA
1 ACTAAATTAGAA
11499327 ACTAAA-TAGAA
1 ACTAAATTAGAA
11499338 ACTAAA
1 ACTAAA
11499344 CATGAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.21
Consensus pattern (12 bp):
ACTAAATTAGAA
Found at i:11499661 original size:15 final size:15
Alignment explanation
Indices: 11499641--11499676 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
11499631 AAATATGCAA
11499641 CAAATTTACATGGAC
1 CAAATTTACATGGAC
11499656 CAAATTTACATGGAC
1 CAAATTTACATGGAC
11499671 CAAATT
1 CAAATT
11499677 GAACTAGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (15 bp):
CAAATTTACATGGAC
Found at i:11508784 original size:22 final size:21
Alignment explanation
Indices: 11508753--11508813 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
11508743 ATACATAAAT
* *
11508753 GGGGTATCGATACCCTAA-TA
1 GGGGTATCGATACCATAAGCA
11508773 GGGTAGTATCGATACCATAAGCA
1 GGG--GTATCGATACCATAAGCA
11508796 GGGGTATCGATACC-TAAG
1 GGGGTATCGATACCATAAG
11508814 GCTGGAAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
20 7 0.19
21 11 0.31
22 14 0.39
23 4 0.11
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (21 bp):
GGGGTATCGATACCATAAGCA
Found at i:11508804 original size:21 final size:20
Alignment explanation
Indices: 11508753--11508813 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 20
11508743 ATACATAAAT
*
11508753 GGGGTATCGATACCCTAA-TA
1 GGGGTATCGATA-CCTAAGCA
11508773 GGGTAGTATCGATACCATAAGCA
1 GGG--GTATCGATACC-TAAGCA
11508796 GGGGTATCGATACCTAAG
1 GGGGTATCGATACCTAAG
11508814 GCTGGAAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 7 0.19
21 13 0.36
22 12 0.33
23 4 0.11
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (20 bp):
GGGGTATCGATACCTAAGCA
Found at i:11510194 original size:90 final size:88
Alignment explanation
Indices: 11510080--11510249 Score: 286
Period size: 90 Copynumber: 1.9 Consensus size: 88
11510070 TCGCGAATAT
* *
11510080 TTAATTTCAATTAATTAAATATAGATTTAATTAATTTCAAATAATAAAATCCCTAATATGATTAG
1 TTAAATTCAATTAATTAAATATAGATTTAATTAATTTCAAATAATAAAA-CCATAATATGATTAG
11510145 GGTAACTTGGATATAAGAGGATTA
65 GGTAACTTGGATATAAGAGGATTA
*
11510169 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCATAATATGATTAG
1 TTAAATTC-AATTAATTAAATATAGATTTAATTAATTTCAAATAATAAAACCATAATATGATTAG
*
11510234 GGTAACTTGGCTATAA
65 GGTAACTTGGATATAA
11510250 AAGGGTGTGT
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 36 0.47
90 40 0.53
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (88 bp):
TTAAATTCAATTAATTAAATATAGATTTAATTAATTTCAAATAATAAAACCATAATATGATTAGG
GTAACTTGGATATAAGAGGATTA
Found at i:11517486 original size:59 final size:59
Alignment explanation
Indices: 11517415--11517706 Score: 442
Period size: 59 Copynumber: 4.9 Consensus size: 59
11517405 GAATTACCAA
*
11517415 AGGGCACTTTGTGTGCTAAAATGGTAAGTAAATCATACTATGTGCATGAATTTCCAGAT
1 AGGGCACTTTGTGTGCTAAAATGGTAAGTAAATCATACTATGTGTATGAATTTCCAGAT
11517474 AGGGCACTTTGTGTGCTAAAATGGTAAGTAAATCATACTATGTGTATGAATTTCCAGAT
1 AGGGCACTTTGTGTGCTAAAATGGTAAGTAAATCATACTATGTGTATGAATTTCCAGAT
* * *
11517533 AGGGCACTTTGTGTGCTAAAATGATAAGGAAAAT-ATTCTATGTGTATGAATTTCCAGAT
1 AGGGCACTTTGTGTGCTAAAATGGTAA-GTAAATCATACTATGTGTATGAATTTCCAGAT
* *
11517592 AGGGCACTTTGTGTGCTAAAATGGTAAGGAAATCATATTATGTGTATGAATTTCCAGAT
1 AGGGCACTTTGTGTGCTAAAATGGTAAGTAAATCATACTATGTGTATGAATTTCCAGAT
* ** * * * * *
11517651 AGGGCACTCTGTGTGCTAAAATCATAAGGAAATCTTACTGTTTGTATGAAATTCCA
1 AGGGCACTTTGTGTGCTAAAATGGTAAGTAAATCATACTATGTGTATGAATTTCCA
11517707 ATTGAATTTA
Statistics
Matches: 215, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
58 5 0.02
59 205 0.95
60 5 0.02
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (59 bp):
AGGGCACTTTGTGTGCTAAAATGGTAAGTAAATCATACTATGTGTATGAATTTCCAGAT
Found at i:11523707 original size:83 final size:83
Alignment explanation
Indices: 11523563--11523732 Score: 295
Period size: 83 Copynumber: 2.0 Consensus size: 83
11523553 ATATTAGAAA
* *
11523563 AAGTGGTTTGATTCTTAGAATATAATGTTCTTGAATGGTTTTACATGTTATAAGAGGCTAAATGA
1 AAGTGGTTTGATTCTTAGAATAGAATGTTCTTGAATGGTTTTACATGTTATAAGAGACTAAATGA
11523628 AGGAAAATTAGTAAGGTT
66 AGGAAAATTAGTAAGGTT
* *
11523646 AAGTGGTTTGATTCTTAGAATAGAATGTTCTTGAATGGTTTTACATGTTCTATGAGACTAAATGA
1 AAGTGGTTTGATTCTTAGAATAGAATGTTCTTGAATGGTTTTACATGTTATAAGAGACTAAATGA
*
11523711 AGGAAAGTTAGTAAGGTT
66 AGGAAAATTAGTAAGGTT
11523729 AAGT
1 AAGT
11523733 AGAGAAGTGT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (83 bp):
AAGTGGTTTGATTCTTAGAATAGAATGTTCTTGAATGGTTTTACATGTTATAAGAGACTAAATGA
AGGAAAATTAGTAAGGTT
Found at i:11524625 original size:59 final size:59
Alignment explanation
Indices: 11524480--11524886 Score: 609
Period size: 59 Copynumber: 6.9 Consensus size: 59
11524470 ATTACCAAAA
* * *
11524480 GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATCTGTAAGAATTTCCAG-TAT
1 GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCAGATAG
* * *
11524538 GGCACTTTATGTGCAAAAATGGTAAGGAAAACATACTATGTGTATGAATTTCCAGATAG
1 GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCAGATAG
* * * *
11524597 GGTACTTTGTGTACTAAAATGATAAGGAAATCATACTATGTATATGAATTTCCAGATAG
1 GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCAGATAG
*
11524656 GGCACTTTGTGTGTTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCAGATAG
1 GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCAGATAG
* *
11524715 GACACTTTGTGTGCTAAAATGGTAAGAAAATCATACTATGTGTATGAATTTCCAGATAG
1 GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCAGATAG
* * * *
11524774 GGCTCTTTGTCTGCTAAAATGGTAAGGAAATCATACTAAGTGTATTAATTTCCAGATAG
1 GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCAGATAG
* * * * *
11524833 GGCACTCTGTGTGCTAAAATGATAAGGAAATCATATTATTTGTATGAAATTCCA
1 GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCA
11524887 ATTGAATTTA
Statistics
Matches: 312, Mismatches: 36, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
58 50 0.16
59 262 0.84
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (59 bp):
GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTATGTGTATGAATTTCCAGATAG
Found at i:11526036 original size:24 final size:24
Alignment explanation
Indices: 11525993--11526071 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
11525983 ATATTACATG
11525993 TATATTAACTTAAAAAATAT-TCTT
1 TATATTAACTTAAAAAATATAT-TT
** *
11526017 TATATTAACTTATTACATATATTT
1 TATATTAACTTAAAAAATATATTT
*
11526041 TATTATTAGCTTAATTTAAAA-ATATTT
1 TA-TATTAACTTAA---AAAATATATTT
11526068 TATA
1 TATA
11526072 ATTATTTTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
24 21 0.49
25 10 0.23
26 2 0.05
27 8 0.19
28 2 0.05
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.51
Consensus pattern (24 bp):
TATATTAACTTAAAAAATATATTT
Found at i:11526092 original size:27 final size:27
Alignment explanation
Indices: 11526033--11526092 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
11526023 AACTTATTAC
*
11526033 ATATATTTTATTATTAGCTTAATTTAA
1 ATATATTTTATAATTAGCTTAATTTAA
* ** *
11526060 AAATATTTTATAATTATTTTCATTTAA
1 ATATATTTTATAATTAGCTTAATTTAA
11526087 ATATAT
1 ATATAT
11526093 ATATTTTATG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (27 bp):
ATATATTTTATAATTAGCTTAATTTAA
Found at i:11526269 original size:31 final size:31
Alignment explanation
Indices: 11526233--11526299 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
11526223 GGTGAGCACG
* *
11526233 TCTTAATTAAATAGAAACCAAAGTGACCATA
1 TCTTAATTAAATAAAAACAAAAGTGACCATA
*
11526264 TCTTAATTAAATAAAAACAAAATTGACCATA
1 TCTTAATTAAATAAAAACAAAAGTGACCATA
11526295 TCTTA
1 TCTTA
11526300 TGTTTTTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.30
Consensus pattern (31 bp):
TCTTAATTAAATAAAAACAAAAGTGACCATA
Found at i:11535971 original size:147 final size:146
Alignment explanation
Indices: 11535701--11535993 Score: 496
Period size: 147 Copynumber: 2.0 Consensus size: 146
11535691 TGATAATGTT
* * *
11535701 ATTATATGAACTTTATTATCTTTCAGTTTATGTTAAACACAGACATGTAACTGAAATAATATTGG
1 ATTATATGAACTTTATTATATTTCAGTTTATGTTAAACACAGACATATAACTGAAATAATAGTGG
* * *
11535766 CAATGCCTTTATTCAATAAAATCGGTAAATAAAAGTATTATTTCAATCATCATGTGATTGGTCTT
66 CAATGCCTTTATTCAATAAAATCGGTAAACAAAAGTATTATTACAATCATCATATGATTGGTCTT
11535831 TGGGCATACTCTAACA
131 TGGGCATACTCTAACA
* *
11535847 ATTATATGGACTTTATTATATTTCATTTTATGTTAAACACAGACATATAACTGAAAATAATAGTG
1 ATTATATGAACTTTATTATATTTCAGTTTATGTTAAACACAGACATATAACTG-AAATAATAGTG
*
11535912 GCAATGCCTTTATTCAATAAAATCGGTAAACAAATGTATTATTACAATCATCATATGATTGGTCT
65 GCAATGCCTTTATTCAATAAAATCGGTAAACAAAAGTATTATTACAATCATCATATGATTGGTCT
11535977 TTGGGCATACTCTAACA
130 TTGGGCATACTCTAACA
11535994 GTATTTGATA
Statistics
Matches: 137, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
146 49 0.36
147 88 0.64
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (146 bp):
ATTATATGAACTTTATTATATTTCAGTTTATGTTAAACACAGACATATAACTGAAATAATAGTGG
CAATGCCTTTATTCAATAAAATCGGTAAACAAAAGTATTATTACAATCATCATATGATTGGTCTT
TGGGCATACTCTAACA
Found at i:11541278 original size:81 final size:81
Alignment explanation
Indices: 11541193--11542316 Score: 1416
Period size: 81 Copynumber: 13.9 Consensus size: 81
11541183 ACCCAAATGC
* * * * * * * *
11541193 ATTTAGCCTTTCATTTAACTTGCATGATTGACACCTTTCTGCCAAATGCATAACTAGGCCATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
11541258 TCTTTTACTCAACGGT
66 TCTTTTACTCAACGGT
* *
11541274 ATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCACTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
**
11541339 T-TTTTACTCAACACT
66 TCTTTTACTCAACGGT
* *
11541354 ATTTAA-CATTCATCTAA-TGGGCATAATTGACACATTTCTGCCAAATACACAGCTAGGCCATTA
1 ATTTAACCGTTCATCTAACT-GGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTA
* *
11541417 ATCTTTTACTAAATGGT
65 ATCTTTTACTCAACGGT
* * * * **
11541434 ATTTAATCATTCATATAACTAGCATAATTGACACATTTCTGTGAAATGCACAGCTAGGCCATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
* *
11541499 TCTTTAACTCATCGGT
66 TCTTTTACTCAACGGT
* * * * * *
11541515 ATTTAACTGTTCATCTAAC-AGCATAATTGACATATTTATGCCAAATGCACATCTAGGACATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
*
11541579 TCTTTTACTCAACGAT
66 TCTTTTACTCAACGGT
* * **
11541595 ATTTAACCGTTCATCTAACTGGCATAATTGATATC-TTTCTACCAAATGCACATTTAGGCCATTA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACA-CATTTCTGCCAAATGCACAGCTAGGCCATTA
*
11541659 ATCTTTTACTCAATGGT
65 ATCTTTTACTCAACGGT
* * * *
11541676 ATTTAACCGTTCATCTAACTGACATAATTGACACATTTATGCCAAATGCACATCAAGGCCATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
*
11541741 TCTTTTACTCAACGAT
66 TCTTTTACTCAACGGT
* * * * * *
11541757 ATCTAATCGTTCATCTAATTGGCATAATTAACTCATTTCTGCCAAATGCACAGCTAGGACATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
*
11541822 TCTTTTACTCAACGAT
66 TCTTTTACTCAACGGT
* * *
11541838 ATTTAACCGTTCATCTAACTGGCATAATTGACACCA-TTCTTCCAAATCCACAGTTAGGCCATTA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACA-CATTTCTGCCAAATGCACAGCTAGGCCATTA
**
11541902 ATCTTTTACTCATTGGT
65 ATCTTTTACTCAACGGT
* * *
11541919 ATTTAACCGTTCATCTAATTGGCATAATTGATATC-TTTCTGCCAAATGCACATCTAGGCCATTA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACA-CATTTCTGCCAAATGCACAGCTAGGCCATTA
*
11541983 ATCTTTTACTCAATGGT
65 ATCTTTTACTCAACGGT
* *
11542000 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACATCAAGGCCATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
*
11542065 TCTTTTACTCAACGAT
66 TCTTTTACTCAACGGT
* * * * * * *
11542081 ATCTAATCGTTCATCTAATTGGCATAATTAACTCATTTATGCCAAATGCACAGCTAGGACATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
*
11542146 TCTTTTACTCAACGAT
66 TCTTTTACTCAACGGT
* * * *
11542162 ATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTTCCAAATTCACAGTTAGGCCATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
*
11542227 TCTTTTACTCATCGGT
66 TCTTTTACTCAACGGT
* * *** * * * **
11542243 ATTTAACAGTTTATCTAACAAACATATTTGACACATTTCTACCAAATGCACAACTAGGAGATTAA
1 ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
11542308 TCTTTTACT
66 TCTTTTACT
11542317 TTATAACTGT
Statistics
Matches: 905, Mismatches: 128, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
78 1 0.00
79 53 0.06
80 106 0.12
81 742 0.82
82 3 0.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (81 bp):
ATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
TCTTTTACTCAACGGT
Found at i:11547393 original size:81 final size:81
Alignment explanation
Indices: 11547282--11547760 Score: 681
Period size: 81 Copynumber: 5.9 Consensus size: 81
11547272 TATTTGGGGG
* * * * * *
11547282 ATTTAACCTTTCATTTAACTTGCATGATTGACACCTTACTGCCAAATGCACAGCTAGGCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTAA
11547347 TCTTTTACTCAACGGT
66 TCTTTTACTCAACGGT
** * *
11547363 ATTTAACCGCTCATCTAACTGGCATAATTGACACCTTTCTACCAAATGCACAACTAGGCCATTGA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTAA
* *
11547428 TATTTTACTCAACGCT
66 TCTTTTACTCAACGGT
** * * *
11547444 ATTTAACCATTCATCTAACTGGCATAATTGACATATTTCTGCCAAATGAACAGCTAGGTCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTAA
*
11547509 TCTTTTACTCAACGGA
66 TCTTTTACTCAACGGT
* *
11547525 ATTTAACCGTTCATCTAACAGGCATAATTGACACCTTTCTGCCAAATGCACATA-TAGGCCATTA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACA-ACTAGGCCATTA
*
11547589 ATCTTTTACTCATCGGT
65 ATCTTTTACTCAACGGT
* * * * *
11547606 ATTTAACAATTCATCTAACTGACATAATTGACACATTTCTGCCAAATGCTCAACTAGCCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTAA
**
11547671 TCTTTTACTCAACAAT
66 TCTTTTACTCAACGGT
*
11547687 ATTTAATCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTAA
11547752 TCTTTTACT
66 TCTTTTACT
11547761 TTAGAACTTT
Statistics
Matches: 348, Mismatches: 48, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
80 1 0.00
81 347 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (81 bp):
ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTAA
TCTTTTACTCAACGGT
Found at i:11548010 original size:57 final size:57
Alignment explanation
Indices: 11547924--11548058 Score: 227
Period size: 57 Copynumber: 2.4 Consensus size: 57
11547914 ATTCATATAT
* *
11547924 AATTTCTTAG-TTTTTGCACATAAAGTGCCCATAAGAAAATTCATAAACTTATTATG
1 AATTTCTTAGCTTTTTGCACACAAAGTGCCCATAAGAAAATTCATAAACTAATTATG
* *
11547980 AATTTCTTAGCTTTTTGCACACAATGTGCCCATACGAAAATTCATAAACTAATTATG
1 AATTTCTTAGCTTTTTGCACACAAAGTGCCCATAAGAAAATTCATAAACTAATTATG
11548037 AATTTCTTAGCTTTTTGCACAC
1 AATTTCTTAGCTTTTTGCACAC
11548059 TTAGTGTCAA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
56 10 0.14
57 64 0.86
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (57 bp):
AATTTCTTAGCTTTTTGCACACAAAGTGCCCATAAGAAAATTCATAAACTAATTATG
Found at i:11548510 original size:20 final size:20
Alignment explanation
Indices: 11548485--11548537 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
11548475 GTTAACAATG
*
11548485 GTATCGATACCATCCTCATA
1 GTATCGATACCACCCTCATA
* *
11548505 GTATCGATACTC-CCCTCTTG
1 GTATCGATAC-CACCCTCATA
11548525 GTATCGATACCAC
1 GTATCGATACCAC
11548538 TTGAATCCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (20 bp):
GTATCGATACCACCCTCATA
Found at i:11549855 original size:7 final size:7
Alignment explanation
Indices: 11549843--11549869 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
11549833 TTAAATTATT
11549843 AATAATG
1 AATAATG
11549850 AATAATG
1 AATAATG
11549857 AATAATG
1 AATAATG
11549864 AATAAT
1 AATAAT
11549870 ATTATTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (7 bp):
AATAATG
Found at i:11551123 original size:29 final size:31
Alignment explanation
Indices: 11551076--11551149 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
11551066 CATATTTTGG
* * **
11551076 TTAGTGACCAAAATGT-AAATTTTGAAAG-T
1 TTAGTGACCAAAGTATAAAATTGGGAAAGAT
*
11551105 TTGGTGACCAAAGTATAAAATTGGGAAAGAT
1 TTAGTGACCAAAGTATAAAATTGGGAAAGAT
11551136 TTAGTGACCAAAGT
1 TTAGTGACCAAAGT
11551150 TGTAATTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 13 0.35
30 10 0.27
31 14 0.38
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (31 bp):
TTAGTGACCAAAGTATAAAATTGGGAAAGAT
Found at i:11559184 original size:960 final size:958
Alignment explanation
Indices: 11556903--11561001 Score: 6540
Period size: 958 Copynumber: 4.3 Consensus size: 958
11556893 AGAAAATTTA
11556903 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAA
1 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAA
* * * *
11556968 CAGATTTTTAGACTCTTATATAAAACAAAATACAATTACATGCCTCATAATCACATGTACCATAC
66 CAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATATACCATAC
* * *
11557033 TCTGCAAGCAACGCTGGAAAAA-TGCCCTTATTGATGCCGATAGCTGCACTAGTACAATTCTTTT
131 TCTGCAAGCAACGCCGGAAAAACT-CCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTT
* * ** *
11557097 AACCTGCAATTGTGAGTAATGGAGTGGGCTTCGGAAAGCTCTATAAAACAGAACTACCAGGTGAT
195 AACCTACAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTATAATACAGAACTACCAGGTGAT
* * *
11557162 GCTATAGGACATGCAAATAAATTGAAAGCCATATAATTTTCCTTATCGAATCAGACATATATCAG
260 GCTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCAG
* * *
11557227 TTTTTGGAATAATCTCGGCTTCCAATGGTAGTTCATCAAGTATAAGCTATAAAGATCTCTGTTCA
325 TTTTCGGAATAATCTCAGCTTCCAATGGTAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTCA
* *
11557292 TAAGAAGAATGCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGT
390 TAAGAAGCATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGT
* *
11557357 ATGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACAGT
455 ACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGT
* * * *
11557422 AGCGGAGCTTTTTAAACTCATATTTAAACCAACATATAAAGACCTAAGGGAACATCTTAGGGCCT
520 AGTGGAGCTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
* * * *
11557487 GAGACCCTAGCCAAGAAAGTTTGGGGCCATGGGGCCAACCTAAGAACACATCTTAGGGCCACAAG
585 GAGAGCCTACCCAAGAAAGTTTGGGGCCATGGAGCCTACCTAAGAACACATCTTAGGGCCACAAG
* * * *
11557552 GCC-TCCTCGAGAATGATCTCAGGGCCGCAAAGCCTACCTAAGAGTCACATTAGGACAATAAAAA
650 GCCAACC-CGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAA
* ** *
11557616 TTTTCCAGCTTGATCAGAGCTGTACTTTACAAATCTGTATCTCCAAGATACAATTAATACAGTGA
714 TTTTCCAACTTGATCAGAGCTGTACTTTACAAATCAATATCTCCAAGATACAATTAATATAGTGA
11557681 TACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTTAGC
779 TACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTTAGC
* ** *
11557746 GTACCACATGTTAAAACAATAAAATAATTTTTTAACCCGATCTGATCTGGAGTGTCACATTCGGG
844 ATACCACATGTTAAAACAATAAAATAATTTTTTAACCCGATCCAATCTGGAGTGTCACATTAGGG
**
11557811 CCACCAAAGCGACTCACCGTAAAAATAGCAGTAAATTTAAAACTTTTCTT
909 CCACCAAAGCGACTCACCGTAAAAATAGCAAAAAATTTAAAACTTTTCTT
* * *
11557861 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAAAAAAAGTTATCATTTTTTGAAATAAAA
1 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAA
*
11557926 CATATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATATACCATAC
66 CAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATATACCATAC
11557991 TCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTA
131 TCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTA
* * * * *
11558056 ACCTACAGTGGTGAGTAATGGAGTTAGCTTCGTAAATCTCTCTAATATAGAACTACCAGGTGATG
196 ACCTACAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTATAATACAGAACTACCAGGTGATG
**
11558121 CTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGT
261 CTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCAGT
*
11558186 TTTCGGAATAATCTCAGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCAT
326 TTTCGGAATAATCTCAGCTTCCAATGGTAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTCAT
*
11558251 AAGAAGCATTCATGGTATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTA
391 AAGAAGCATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTA
11558316 CGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTA
456 CGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTA
* *
11558381 GTGGAGCTTTTTAAACTTGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTC
521 GTGGAGCTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTG
* *
11558446 AGAGCCTACCCAAGAAAGTTTGGGGCCATGGAGCCTACCTAAGAACACATCTTAGGGTCACAGGG
586 AGAGCCTACCCAAGAAAGTTTGGGGCCATGGAGCCTACCTAAGAACACATCTTAGGGCCACAAGG
* *
11558511 CCTACCCAAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATT
651 CCAACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATT
* *
11558576 TTGCAACTTGATCAGAGCTGTACTTTACGAATCAATATCTCCAAGATACAATTAATATAGTGATA
716 TTCCAACTTGATCAGAGCTGTACTTTACAAATCAATATCTCCAAGATACAATTAATATAGTGATA
* *
11558641 CTAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAATAACCATAGATTTTAGCA
781 CAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCAT-AAAACAGTAACCATAGATTTTAGCA
* * * *
11558706 TAACACATGTTAAAACAATAAAACAATTTTTTTAACCCGATCCGATATGGAGTGTCACATTAGGG
845 TACCACATGTTAAAACAATAAAATAA-TTTTTTAACCCGATCCAATCTGGAGTGTCACATTAGGG
* * * *
11558771 CCACCAAAGTGATTAACCGTAAAAATAG-AGGAAAATTTAAAACTTTTCTT
909 CCACCAAAGCGACTCACCGTAAAAATAGCA-AAAAATTTAAAACTTTTCTT
*
11558821 AAACTTGTAAACTCATAAAATTATTTATGAGTA-AAATATAAAAGTTAACAGTATTTGAAATAAA
1 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAA-ATAAAAGTTATCAGTATTTGAAATAAA
* *
11558885 ACAGATATTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATGTACCATA
65 ACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATATACCATA
* * *
11558950 CTATGCAAGCAATGCCGGAAAAACTCCCTTATTGATGTCGATAGTTGCACTGGTACAATTCTTTT
130 CTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTT
* *
11559015 AACCTACAAAGGTGAGTAATGGAGTGAGCTTCGGAAAGCTCT-TCAATACAGAACTACCAGGTGA
195 AACCTACAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTAT-AATACAGAACTACCAGGTGA
* *
11559079 TGCTATAGGACATGCATATAAATTGAAAGCCATATTATTTTCCTTATTGAATCAGACATATACCG
259 TGCTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCA
** * * *
11559144 GTTTTCGGAATAATCTGGGGTTCCAATGGTAGTTCATCAAGTAAAAGCTATAAAGATCTCAGTCC
324 GTTTTCGGAATAATCTCAGCTTCCAATGGTAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTC
* *
11559209 ATAAGAAGCATTCATGGTATCATGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAAGAG
389 ATAAGAAGCATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAG
*
11559274 TATGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTG
454 TACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTG
*
11559339 TAGTGGAGCTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCT
519 TAGTGGAGCTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCC
* * *
11559404 TGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATCTTAGGGCTACAG
584 TGAGAGCCTACCCAAGAAAGTTTGGGGCCATGGAGCCTACCTAAGAACACATCTTAGGGCCACAA
* * * * *
11559469 GGCCAACCTGATAATGATCTCAGGGCCGCAGAGTCTACCTAACAGTCACATTAGGTCCA-AAAGA
649 GGCCAACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA-A
* * ** * *
11559533 AATTTCCAACTTGATCAGAGTTGTACTTTACAAATCTGTATCTCCAATATATAGATT-ATATAGT
713 ATTTTCCAACTTGATCAGAGCTGTACTTTACAAATCAATATCTCCAAGATACA-ATTAATATAGT
* **
11559597 GATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCATAAAATGGTAACCATAGATTTTA
777 GATACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTTA
** * * * *
11559662 GTGTACCACATGTTCAAACAATAAAATAATTTTTTAATCTGATCCAATCTGGAGTGTCATATTAG
842 GCATACCACATGTTAAAACAATAAAATAATTTTTTAACCCGATCCAATCTGGAGTGTCACATTAG
*
11559727 GGCCACCAAAGCGACTCACCATAAAAATAGCAAAAAATTTAAAACTTTTCTT
907 GGCCACCAAAGCGACTCACCGTAAAAATAGCAAAAAATTTAAAACTTTTCTT
* * *
11559779 AAAATTGTAAACTCGTAAAATTATTTATGAGAACAAAATAAAAGTTATCAGTATTTGAAATAAAA
1 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAA
* * * *
11559844 CAGATTTTTAGACTCAAATATAAAATAAAATACAATTATATACCCCCTAATCACATATACCATAC
66 CAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATATACCATAC
* * *
11559909 TCTGCAAGCAACGCTGGAAGAACTCCCTTATTGATGTTGATAGCTGCACTGGTACAATTCTTTTA
131 TCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTA
* *
11559974 ACCTACAATGGTGAGTAATGGAGTTTGCTTCGGAAAGCTCTATAATACAGAACTACTAGGTGATG
196 ACCTACAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTATAATACAGAACTACCAGGTGATG
* *
11560039 CTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCTTTATTTAATCAGACATATACCAGT
261 CTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCAGT
* * *
11560104 TTTTGAAATAATCTCAGATTCCAATGGTAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTCAT
326 TTTCGGAATAATCTCAGCTTCCAATGGTAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTCAT
11560169 AAGAAGCATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTA
391 AAGAAGCATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTA
* *
11560234 CGATAAAATCATAATATGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATTATACTGTA
456 CGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTA
*
11560299 GTGGAGCTTTTTTAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTG
521 GTGGAGCTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTG
* * * * * *
11560364 AGAGCCTTCCCAAGAAAGTTTGGGGCCAAGGGGTCTACCTAAGAATACATATTAGGGCCACAAGG
586 AGAGCCTACCCAAGAAAGTTTGGGGCCATGGAGCCTACCTAAGAACACATCTTAGGGCCACAAGG
* * *
11560429 CCAACCCGAGAATGATCTTAAGGCCGCATAGCCTATCTAAGAGTCACATTAGGTCCATACAAAAT
651 CCAACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATA-AAAAT
* * *
11560494 TTT-CAACTTGATTAGAGTTGTACTTTACAAATCAATATCTCCAAGATACAATTAATATAGTAAT
715 TTTCCAACTTGATCAGAGCTGTACTTTACAAATCAATATCTCCAAGATACAATTAATATAGTGAT
* *
11560558 ACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAATAGTAACCCTAGATTTTAGC
780 ACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCAT-AAAACAGTAACCATAGATTTTAGC
**
11560623 ATACCACATGTTAAAACAATAAAATAATTTTTTTAACCCGATCCAATCTAAAGTGTCACATTAGG
844 ATACCACATGTTAAAACAATAAAATAA-TTTTTTAACCCGATCCAATCTGGAGTGTCACATTAGG
*
11560688 GCCACCAAAGCGACTCACCGTAAAAATAGCGAAAAATTTAAAACTTTTCTT
908 GCCACCAAAGCGACTCACCGTAAAAATAGCAAAAAATTTAAAACTTTTCTT
*
11560739 AAACTTGTAAACTCTTAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAA
1 AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAA
* * *
11560804 CAGATTTTTAGACTCATATATAGAACAAAATACAATTACATGCCCTCTAATCACATATAACATAC
66 CAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATATACCATAC
*
11560869 TCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTATTTTA
131 TCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTA
* * * * * *
11560934 ACCTACAATGGTAAGTAATAGAGTTAGCTTCGAAAAGATCTGTAATACAAAACTACCAGGTGATG
196 ACCTACAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTATAATACAGAACTACCAGGTGATG
11560999 CTA
261 CTA
11561002 CCCGAGAGCC
Statistics
Matches: 2890, Mismatches: 234, Indels: 32
0.92 0.07 0.01
Matches are distributed among these distances:
957 3 0.00
958 1568 0.54
959 158 0.05
960 1158 0.40
961 3 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (958 bp):
AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAA
CAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATATACCATAC
TCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTA
ACCTACAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTATAATACAGAACTACCAGGTGATG
CTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACCAGT
TTTCGGAATAATCTCAGCTTCCAATGGTAGTTCATCAAGTATAAGCTATAAAGATCTCAGTTCAT
AAGAAGCATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTA
CGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTA
GTGGAGCTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTG
AGAGCCTACCCAAGAAAGTTTGGGGCCATGGAGCCTACCTAAGAACACATCTTAGGGCCACAAGG
CCAACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATT
TTCCAACTTGATCAGAGCTGTACTTTACAAATCAATATCTCCAAGATACAATTAATATAGTGATA
CAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTTAGCAT
ACCACATGTTAAAACAATAAAATAATTTTTTAACCCGATCCAATCTGGAGTGTCACATTAGGGCC
ACCAAAGCGACTCACCGTAAAAATAGCAAAAAATTTAAAACTTTTCTT
Found at i:11563565 original size:953 final size:957
Alignment explanation
Indices: 11561005--11568876 Score: 11873
Period size: 953 Copynumber: 8.3 Consensus size: 957
11560995 GATGCTACCC
*
11561005 GAGAGCCTACCCAAGAAAGTTTGGGGCCATGGAGCCTACCTAAGAACACATCTTAGGGTCACAGG
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATCTTAGGGTCACAGG
11561070 GCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAAT
66 GCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAAT
* * * *
11561135 TTTGCAACTTGATCAGAGCTGTACTTTACGAATCAATATCTCCAAGATACAATTAATATAGTGAT
131 TTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACAATT-ATATAGTGAT
*
11561200 ACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACAATAGATTTTAGC
195 ACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAGC
* * * *
11561265 GTACCACATGTTAAAACAATAAAATAATTTTTTTTAACCCGGTCCAATCTAAAGTGTCACATTAG
260 GTACCACATGTTAAAACAATAAAACAA--TTTTTTAACCCGAT-CGATCTAGAGTGTCACATTAG
* *
11561330 GGCTACCAAAGCGACTCACCGTAAAAATAGTGAAAAAATTTAAAACTTTTCTTAAACTTGTAAAC
322 GGCCACCAAAGCGACTCACCGTAAAAATAGAG-AAAAATTTAAAACTTTTCTTAAACTTGTAAAC
*
11561395 TCTTAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGA
386 TCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGA
*
11561460 CTC--ATATAGAACAAAAT--AA-TACATGCCCCCTAATCACTTATACCATACTCTGCAAGCAAC
451 CTCATATATAAAACAAAATACAATTACATGCCCCCTAATCACTTATACCATACTCTGCAAGCAAC
11561520 GCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGT
516 GCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGT
* * * * * *
11561585 AAGTAATAGAGTTAGCTTCGAAAAGATCTGTAATACAAAACTACCAGGTGTTGCTATAGGACATG
581 GAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATG
* *
11561650 CATATAAATTGAAAGCCATATAAGTTTCCTTATTGAATCAGACATATACTGGTTTTCAGAATAAT
646 CATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAAT
11561715 CTCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCA
711 CTCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCA
* **
11561780 TGGTATCACGGGTTCATAAGGCCGAATAAAATGTCTAGTGTGTTCCAACAGTACGATAAAATCAT
776 TGGTATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCAT
*
11561845 AATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATTATACTGTAGTGGAGC-TTTT
841 AATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTT
11561909 AAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
906 AAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
* * * * * *
11561961 GAGAGCCTTCCCAAGAAAGTTTGGGGCTACGGGGCCTACCTAAGAATACA-CATTAGGGCCACAA
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATC-TTAGGGTCACAG
* * *
11562025 GACCTACCCGAGAATGATCTCAGGGCCGTATAGCCTACCTAAGAGTCACAATAGGTCCATAAAAA
65 GGCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAA
* *
11562090 TTTTCCAGCTTCATCAGAGCTATACTTTACAAATCAGTATCTCCAAGATACAATTAATATAGTGA
130 TTTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACAATT-ATATAGTGA
11562155 TACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAAC---AACCATAGATTTTAG
194 TACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAG
* * *
11562217 CGTACCACGTGTTAAAACAATAAAATAATTTTTTAACCCGATCCGATCTGGAGTGTCACATTAGG
259 CGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT-CGATCTAGAGTGTCACATTAGG
*
11562282 GCCACCAAAGCGACTCACCGTACAAATAGCAG-AAAATTTAAAACTTTTCTTAAACTTGTAAACT
323 GCCACCAAAGCGACTCACCGTAAAAATAG-AGAAAAATTTAAAACTTTTCTTAAACTTGTAAACT
* *
11562346 CATAAAATTATTTATTAGTACAAAAAAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGAC
387 CATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGAC
*
11562411 TCATATATAAAACAAAATACAATTACATGCCCCCTAATCACATATACCATACTCTGCAAGCAACG
452 TCATATATAAAACAAAATACAATTACATGCCCCCTAATCACTTATACCATACTCTGCAAGCAACG
11562476 CCGGAAAAACT-CCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGTG
517 CCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGTG
*
11562540 AGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGAGATGCTATAGGACATGC
582 AGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGC
* * *
11562605 GTATAAATTGAAAGCCATATAATTTTCCCTATTGAATCAGGCATATACTGGTTTTCGGAATAATC
647 ATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAATC
*
11562670 TCGGCTTCCAATGGCAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
712 TCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
* *
11562735 GGTATCACGGGTTCACAAGGTCGAATAGGATTTCTAGTGTGTTCCAACAGTACGATAAAATCATA
777 GGTATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATA
* *
11562800 ATAGGTATATTAATCAAAAGATAGTT-AATTAAATCTCAGAAATCATACTGTAGTGGAGCTTTTT
842 ATAGGTACATTAATCAAATGATAGTTCAA-TAAATCTCAGAAATCATACTGTAGTGGAGCTTTTT
* * *
11562864 AAACTTGTATTTAAACCATCGTATAAAGACATAAGTGAACATCTTAGGGCCT
906 AAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
* * * *
11562916 GAGAGCATACCCAAGAAAGTTTGGGGCCAC-GAGGCATACCTAAGAACATATCTTAGGGTCATAG
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGA-GCCTACCTAAGAACACATCTTAGGGTCACAG
*
11562980 GGCCTACCCGAGAATGATCTCAGGGCCGCCTAGCCTACCTAAGAGTCACATTAGGTCCATAAAAA
65 GGCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAA
* * * *
11563045 TTTTCTAGCTTGATCTGAGTTGTACTTTACAAATCAATATCTCCAAGATACAA-TA-ATAGTGAT
130 TTTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACAATTATATAGTGAT
*
11563108 ACAAATCCATAAGTAATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAGC
195 ACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAGC
*
11563173 GTACCACATGTTAAAACAATAAAACAATTTTTTTAACCCGAT-GATC-AGGAG-GTTACATTAGG
260 GTACCACATGTTAAAACAATAAAACAA-TTTTTTAACCCGATCGATCTA-GAGTGTCACATTAGG
* * * *
11563235 GCCACCAAAGTGATTCACTGTAAAAATAGAGGAAAATTTAAAACTTTTCTTAAACTTGTAAACTC
323 GCCACCAAAGCGACTCACCGTAAAAATAGAGAAAAATTTAAAACTTTTCTTAAACTTGTAAACTC
* *
11563300 ATAAAATTATTTATGAGTACAATATAAAAGTTATCAGTATTTGATATAAAACAGATTTTTAGACT
388 ATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGACT
* *
11563365 CGTATATAAAACAAAATACAATTA-ATTGCCCCCTAATCACTTGTACCATACTCTGCAAGCAACG
453 CATATATAAAACAAAATACAATTACA-TGCCCCCTAATCACTTATACCATACTCTGCAAGCAACG
* * * * *
11563429 CCAGAAAACCTCCCTTATTGATGTCGATAGCTGTACTGGTACAA-TCTTTTAACCTGCAAAGGTG
517 CCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGTG
* *
11563493 AGTAATGGAGTGAGCTTCGGAAAGCTCTTTAATACAGAACTACCAGGTGATGCTATAGGACATGC
582 AGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGC
* *
11563558 ATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCATACATATACCGGTTTTCGGAATAATC
647 ATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAATC
* *
11563623 TAGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
712 TCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
* * * * * *
11563688 GGCATCATGGTTTTATAAGGTCGAATAGGATATCTAGTGTGTTCCAACAGTATGATAAAATCATA
777 GGTATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATA
* *
11563753 ATAGATACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATATTGTAGTGGAGCTTTTTA
842 ATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTA
* * * * ** *
11563818 AACTCGTATTTAAACTATCGTATAGATACCTAAAGGAAGTTCTTAGGGCAT
907 AACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
*** * * *
11563869 GAGAGCCTACTTTAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAAAACATTTTAGGGCCACAGG
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATCTTAGGGTCACAGG
* * * * * *
11563934 GCCAACCTGAGAATGATCTCAGGGCTGTATAGTCTACCTAAGAGTCACATTAGGTCTA-AAATAA
66 GCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAA-AA
* * * *
11563998 ATTTCCAGCTTAATCAGAGCTGTACTTTACAAATCTGTATCTCCAAGATATAGATTATATAGTGA
130 TTTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACA-ATTATATAGTGA
* * *
11564063 TACAAATCCA-AAGTCATCACCGTTAAGTCGGTGCAT-CAT-AAAACAATAACCACATATTTTAG
194 TACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAG
* *
11564125 CGTACCACATGTTAAAACAATAAAATAAATTTTTTAACCCAATCCGATCTAGAGTGTCACATTAG
259 CGTACCACATGTTAAAACAATAAAA-CAATTTTTTAACCCGAT-CGATCTAGAGTGTCACATTAG
*
11564190 GGCCACCAAAACGACTCACCGTAAAAAT--AG-AAAATTTAAAACTTTTCTTAAACTTGTAAACT
322 GGCCACCAAAGCGACTCACCGTAAAAATAGAGAAAAATTTAAAACTTTTCTTAAACTTGTAAACT
11564252 CATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGAC
387 CATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGAC
* * *
11564317 TCATATATAAAACAAAATACAATTACATTCCCCCTAATCACATATACCATACTCCGCAAGCAACG
452 TCATATATAAAACAAAATACAATTACATGCCCCCTAATCACTTATACCATACTCTGCAAGCAACG
* * * *
11564382 CTGGAAGAAA-TCCCTTATTGGTGTTGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGG
517 CCGGAA-AAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGT
*
11564446 GAGTAATGGAGTTAGCTTCGGAAAGCTCTATAATACAGAACTACCAGGTGATGCTATAGGACATG
581 GAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATG
* ** * *
11564511 CATATAAATTGAAAGCCATATAATTTTCCTTATTTAATCAGACATATACCAGTTTTTGAAATAAT
646 CATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAAT
* * * * * *
11564576 CTCAGTTTCCAATGGTAGTTCATCCAGAAGAAGATATAAAGATCTCAATTCATAAGAAGCATTCA
711 CTCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCA
* *
11564641 TGGTATCACGGTTTCATAAGGTCGCATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCAT
776 TGGTATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCAT
* *
11564706 AATAGGTACATTAATCAAATGATAGTTCAATAAATCTTAGAAATAATACTGTAGTGGAGCTTTTT
841 AATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTT
* * *
11564771 AAACTCGTATTGAAACCATCGTATAAAGACCGAATGGAACA---T----CCT
906 AAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
** * * *
11564816 GAGAGCCTACTAAAGAACGTTTGGGGCAACGGAGCCTACCTAAGAACACATCTTAGGGTCATAGG
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATCTTAGGGTCACAGG
11564881 GCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCCA-AAAAA
66 GCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGT-CCATAAAAA
* * * * *
11564945 ATTTCCAACTTGATCAGAGATGTACTTTACAAATCTGTATCTCCAAGATATAGATTATATAGTGA
130 TTTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACA-ATTATATAGTGA
* * *
11565010 TACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT-AAAACTGTAACCATAGATTTCAG
194 TACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAG
* * *
11565074 TGTACCACATGTTAAAACAATAAAACAATTTTTTAACTCGATCCGATC-AGGAGTGTCATATTAG
259 CGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT-CGATCTA-GAGTGTCACATTAG
* * *
11565138 GGCCCCCAAAGCAACTCACCGTAAAAATAGAAAAAAATTTAAAACTTTTCTTAAAACTTGTAAAC
322 GGCCACCAAAGCGACTCACCGTAAAAATAGAGAAAAATTTAAAACTTTTCTT-AAACTTGTAAAC
* * *
11565203 TCATAAAATTA-TT-TGAATACAAAATAAAAGTTGTCATTATTTGAAATAAAACAGATTTTTAGA
386 TCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGA
* * * *
11565266 CTCAAATATGAAACAAAATACAATTAAATG-CCCC-AACTCAC--AGTACCATACTATGCAAGCA
451 CTCATATATAAAACAAAATACAATTACATGCCCCCTAA-TCACTTA-TACCATACTCTGCAAGCA
* * * *
11565327 ACGCTGGAAGAACTGCCTTATTGATGTTGATAGCTGCACTGGTACAATTC-TTTAACCTACAATG
514 ACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATG
11565391 GTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACA
579 GTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACA
*
11565456 TGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATA-TCGGTTTTCAGAAT
644 TGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACT-GGTTTTCGGAAT
* *
11565520 AATCTGGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCAT
708 AATCTCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCAT
*
11565585 TCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAAT
773 TCATGGTATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAAT
*
11565650 CATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAATGGAGCTT
838 CATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTT
*
11565715 TTTAAACTCGTATTTAAACCATCGTATAAA-ACCTAAGGGAACATATTAGGGCCT
903 TTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
* * * *
11565769 GAGAGCCTACCCAAGAAAGTTT-GGGCCATGGAGCCTATCTAAGAACACATCTTAGGGACACAAG
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATCTTAGGGTCACAGG
*
11565833 ACCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAAG
66 GCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAA-
* *
11565898 TTAT--AGCTTGATCAAAGCTGTACTTTACAAATCAGTATCTCCAAGATACAATTAATATAGTGA
130 TTTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACAATT-ATATAGTGA
* * ** *
11565961 TACAAATCCATAAGCCATAATAGTTAAGTCGGTGCATCCATAAAAACAGTAACCACAGATTTTAG
194 TACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAG
*
11566026 CGTACAACATGTTAAAACAATAAAACAATTTTTTAACCCGATCCGATCTAGAGTGTCACATTAGG
259 CGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT-CGATCTAGAGTGTCACATTAGG
* * *
11566091 GCCACCAAAACGACTCACCGTAAAAATAGCGAAAAATTTAAAATTTTTCTTAAACTTGTAAACTC
323 GCCACCAAAGCGACTCACCGTAAAAATAGAGAAAAATTTAAAACTTTTCTTAAACTTGTAAACTC
* * *
11566156 ATAAAATTATTTATGAGTACAAAATAAAAGTTTTCAGTATTTTAGATAAAACAGATTTTTAGACT
388 ATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGACT
* * * *
11566221 CATATATAAAACAAAATACAATTACATGCCCCCTAATCA-TATGTACTATACGCTGCCAGCAACG
453 CATATATAAAACAAAATACAATTACATGCCCCCTAATCACT-TATACCATACTCTGCAAGCAACG
** * *
11566285 CC--AAAAAC-AACTT-TTGATGTCGATAGCTGCACTGGTACAATTCATTTAA-CTGCAATGGTG
517 CCGGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGTG
* * * * *
11566345 AGTAATGGAG-TGGCTTCGAAAAGCCCTGTAATACAGAACTACAAGGTGATGCTATATGACATGC
582 AGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGC
11566409 ATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAATC
647 ATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAATC
11566474 TCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
712 TCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
* * * *
11566539 GGTATCATGGGTTCACAAGGCCGAATAAGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATA
777 GGTATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATA
* * *
11566604 ATAGGTACATTAATCCAATGATAGTTCAATAAATCTCATAAATTATACTGTAGTGGAGCTTTTTA
842 ATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTA
*
11566669 AACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAATATCTTAGGGCCT
907 AACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
* * * * *
11566720 GAGAGCCTTCCAAAGAAAATTTGGGGCCACGGGGCCTACCTAAGAATACATCTTAGGGTCACAGG
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATCTTAGGGTCACAGG
* * *
11566785 GCCTACCCGAGAATGATCTCAGGGCCACAGAGTCTACCTAAGAGTCACATTAGGTCCATAAAAAT
66 GCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAAT
* *
11566850 TTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCAAAGATACAATTAATATAGTTAT
131 TTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACAATT-ATATAGTGAT
*
11566915 ACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAATAGTAACCATAGATTTTAGC
195 ACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAGC
* * *
11566980 ATACCACGTGTTAAAACAATAAAACAATTTTTTAACCCGATCCGATCTGGAGTGTCACATTAGGG
260 GTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT-CGATCTAGAGTGTCACATTAGGG
* * * * * *
11567045 CCACCAAAGTGACTAACCCTAAAAATAGCGAAAAATTTAAAACTATTCTTAAACTGGTAAACTCA
324 CCACCAAAGCGACTCACCGTAAAAATAGAGAAAAATTTAAAACTTTTCTTAAACTTGTAAACTCA
*
11567110 TAAAATTATTTATTAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGACTC
389 TAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGACTC
*
11567175 ATATATAAAAC-AAAT--AA-T--ATGCCCCCTAATCACATATACCATACTCTGCAAGCAACGCC
454 ATATATAAAACAAAATACAATTACATGCCCCCTAATCACTTATACCATACTCTGCAAGCAACGCC
*
11567234 GGAAAAACTCCCTTATTGATGTCGATAGCCGCACTGGTACAATTCTTTTAACCTACAATGGTGAG
519 GGAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGTGAG
*
11567299 TAATGGAGTTAGCTTCGGAAAGTTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAT
584 TAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAT
*
11567364 ATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATATTGGTTTTCGGAATAATCTC
649 ATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAATCTC
11567429 GGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGG
714 GGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGG
* *
11567494 TATCACGGGTTCACAAGGTCGAATAGGATGTCTAGTGTGTTACAACAGTACGATAAAATCATAAT
779 TATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAAT
* *
11567559 AGTTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATATTGTAGTGGAGCTTTTTAAA
844 AGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAA
* *
11567624 CTTGTATTTAAACCATCGTATAAAGACATAAGGGAACATCTTAGGGCCT
909 CTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
* *
11567673 GAGAGCCTACCCAAGAAAGTTTGGGGCCAC-GAGGCCTACCTAATAACATATCTTAGGGTCACAG
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGA-GCCTACCTAAGAACACATCTTAGGGTCACAG
* * * *
11567737 GGCCTACCCGAGAATGATCTCAGGGCCACAGAGTCTACCTAAGAGTCACATTACGTCCATAAAAA
65 GGCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAA
* * * *
11567802 TTTTCCATCTTGATTAGAGCTGTACTTTACGAATCAGTATCTCCAAGATATAGATTATATAGTGA
130 TTTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACA-ATTATATAGTGA
*
11567867 TACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAG
194 TACAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAG
* * *
11567932 CGTACCACATGTTAAAACAATAAAATAATTTTTTTTACCTGATCCGATCTAGAGTGTCACATTAG
259 CGTACCACATGTTAAAACAATAAAACAA-TTTTTTAACCCGAT-CGATCTAGAGTGTCACATTAG
* * * * *
11567997 GGCCACCAAAACGACACACCGTAAATATAGCGAAAATTTTAAAACTTTTCTTAAACTTGTAAACT
322 GGCCACCAAAGCGACTCACCGTAAAAATAGAGAAAAATTTAAAACTTTTCTTAAACTTGTAAACT
11568062 CATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGAC
387 CATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGAC
* *
11568127 TC--ATATAAAAC-AAATACAATTACATG-CCCCTAATCA-TAAATA-CATACTCTGTAAGCAAC
452 TCATATATAAAACAAAATACAATTACATGCCCCCTAATCACT-TATACCATACTCTGCAAGCAAC
* * * * *
11568186 GCCGAAAAAAAACTCCCTTATTGATGTCGATAGCTGCATTGATAC--TTCTTTTAA-GTGCAATG
516 GCCG--GAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATG
* **
11568248 GTGAGTAAAGGAGAGAGCTTCGGAAAAGCTCTGTAATACAGAACTACCAGGT--TGCTATAGGAC
579 GTGAGTAATGGAGTTAGCTTCGG-AAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGAC
* * * *
11568311 ATGCATATATATTGAAAGCCATATAATTTTCCTTATTTAATCAGACATATACCGGTTTTCGAAAT
643 ATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAAT
* *
11568376 AATCTCAGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAAATCTCAGTTCATAAGAAGCAT
708 AATCTCGGCTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCAT
* * * * * *
11568441 TCATGGTATCATGGTTTCATAAGGTCAAATAGGATGTCTAGTGTGCTCCAACA-TAATGGTAAAA
773 TCATGGTATCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGT-ACGATAAAA
* * *
11568505 TCATAATATGTACATTAATCAAATGATAGTTCAATACATCTAAGAAATCATACTGTAGTGGAGCT
837 TCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCT
* * *
11568570 TTTTAAACTCGAATTTGAACCATCGTATAAAGACCTAAGGGAACATATTAGGGCCT
902 TTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
** * * * * *
11568626 GAGAGCCTACTAAAGAACGTTTGGGGCAACGGAGCCTACCTAAGAATACATCTTAGGGACACAGT
1 GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATCTTAGGGTCACAGG
** *
11568691 G-CTAACCTAAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACA-TAGGTCCATAAAAA
66 GCCT-ACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAA
* * * *
11568754 TTTTCCATCTTGATCAGACCTGTACTTTACAAATCAGTATCTCCAAGATACAGTTATACAGTGAT
130 TTTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACAATTATATAGTGAT
* * *
11568819 ATAAATCC-----TCATCACCCTTAAGTTGGGTGCATCCAT-AAAACAGTAACCATAGATTTTA
195 ACAAATCCATAAGTCATCACCGTTAAG-TCGGTGCATCCATAAAAACAGTAACCATAGATTTTA
11568877 AACTTGTAAA
Statistics
Matches: 6313, Mismatches: 510, Indels: 196
0.90 0.07 0.03
Matches are distributed among these distances:
946 45 0.01
947 581 0.09
948 150 0.02
949 61 0.01
950 499 0.08
951 342 0.05
952 523 0.08
953 2406 0.38
954 950 0.15
955 416 0.07
956 302 0.05
957 38 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (957 bp):
GAGAGCCTACCCAAGAAAGTTTGGGGCCACGGAGCCTACCTAAGAACACATCTTAGGGTCACAGG
GCCTACCCGAGAATGATCTCAGGGCCGCATAGCCTACCTAAGAGTCACATTAGGTCCATAAAAAT
TTTCCAGCTTGATCAGAGCTGTACTTTACAAATCAGTATCTCCAAGATACAATTATATAGTGATA
CAAATCCATAAGTCATCACCGTTAAGTCGGTGCATCCATAAAAACAGTAACCATAGATTTTAGCG
TACCACATGTTAAAACAATAAAACAATTTTTTAACCCGATCGATCTAGAGTGTCACATTAGGGCC
ACCAAAGCGACTCACCGTAAAAATAGAGAAAAATTTAAAACTTTTCTTAAACTTGTAAACTCATA
AAATTATTTATGAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTTAGACTCAT
ATATAAAACAAAATACAATTACATGCCCCCTAATCACTTATACCATACTCTGCAAGCAACGCCGG
AAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGTGAGTA
ATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATAT
AAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAATCTCGG
CTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTA
TCACGGGTTCATAAGGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAG
GTACATTAATCAAATGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACT
CGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCT
Found at i:11566787 original size:32 final size:31
Alignment explanation
Indices: 11566743--11566827 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 31
11566733 AGAAAATTTG
* *
11566743 GGGCCACGGGGCCTACCTAAGAATACATCTTA
1 GGGCCACAGGGCCTACCTAAGAAT-CATCTCA
* ** *
11566775 GGGTCACAGGGCCTACCCGAGAATGATCTCA
1 GGGCCACAGGGCCTACCTAAGAATCATCTCA
* *
11566806 GGGCCACAGAGTCTACCTAAGA
1 GGGCCACAGGGCCTACCTAAGA
11566828 GTCACATTAG
Statistics
Matches: 42, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 22 0.52
32 20 0.48
ACGTcount: A:0.28, C:0.28, G:0.27, T:0.16
Consensus pattern (31 bp):
GGGCCACAGGGCCTACCTAAGAATCATCTCA
Found at i:11568733 original size:31 final size:32
Alignment explanation
Indices: 11568657--11568733 Score: 86
Period size: 31 Copynumber: 2.4 Consensus size: 32
11568647 TGGGGCAACG
*
11568657 GAGCCTACCTAAGAATACATCTTAGGGACACA
1 GAGCCTACCTAAGAATACATCTCAGGGACACA
* * * *
11568689 GTG-CTAACCTAAGAAT-GATCTCAGGGCCGCA
1 GAGCCT-ACCTAAGAATACATCTCAGGGACACA
11568720 GAGCCTACCTAAGA
1 GAGCCTACCTAAGA
11568734 GTCACATAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
31 23 0.62
32 14 0.38
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.18
Consensus pattern (32 bp):
GAGCCTACCTAAGAATACATCTCAGGGACACA
Found at i:11571385 original size:31 final size:31
Alignment explanation
Indices: 11571321--11571409 Score: 115
Period size: 31 Copynumber: 2.8 Consensus size: 31
11571311 AGAAAGTTTG
* *
11571321 GGGCTACAGTGCCTACCTAAGAACACATCTTA
1 GGGCTACAGAGCCTACCTAAGAA-TCATCTTA
* *
11571353 GGGCTACAGAGCCTACCTGAGAATGATCTTA
1 GGGCTACAGAGCCTACCTAAGAATCATCTTA
**
11571384 GGGCCGCAGAGCCTACCTAAGAATCA
1 GGGCTACAGAGCCTACCTAAGAATCA
11571410 CATTAGGTCC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 28 0.57
32 21 0.43
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.19
Consensus pattern (31 bp):
GGGCTACAGAGCCTACCTAAGAATCATCTTA
Found at i:11573801 original size:958 final size:958
Alignment explanation
Indices: 11569629--11576364 Score: 8941
Period size: 958 Copynumber: 7.1 Consensus size: 958
11569619 AGTGATACAA
* *
11569629 AAAATAGTAACCATAGATTTCAGTGTACCACATCTTAAAACAATAAAACAATTTTTTAACCCGAT
1 AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT
* * *
11569694 CCAATATGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCGAAAAATTTAAA
66 CCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCGGAAAATTTAAA
**
11569759 ACTTTTCTTAAAACTTGTAAACTCATAATGTTATTTATGAGTACAAAATAAAAGTTATCAGTATT
131 ACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATT
** *
11569824 TGAAATAAAATAGATTTTCCGACTCATATATAAAACAAAATACAATTACAAGCCCCCTAATCACA
196 TGAAATAAAATAGATTTTCATACTCATATATAAAACAAAATACAATTAC-ATCCCCCTAATCACA
* * * * *
11569889 TGTACCACACTCTTCAAGAAACGCC-AGAAAAACTCACTTATTGATGTCGATAGCTGCATTGGTA
260 TGTACCATACTCTGCAAGCAACGCCGA-AAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTA
* * * *
11569953 CAATTCTTTTAACCTGCAATGTTGAGTAATGTAGTGAGCTTCGGAAAGCTCTATAATACAGAACT
324 CAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACT
* *
11570018 ACCAGGTGATGCTATATGACATGCAGATAAATTGAAAG-CATATAATTTTCCTTATTAAATCAGA
389 ACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGA
* * * *
11570082 CATATACCGATATTCGGAATTATCTGGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGA
454 CATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGA
* *
11570147 TCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGGTCGAATAGGATGTCTAGTGTT
519 TCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGTTCGAATAGGATGTCTAGTGTG
* * * *
11570212 TTCCAACAATACGATAAAATCGTAATAGTTACAGTAATCAAATGATAGTTCAATAAATCTCAGAA
584 TTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAA
* *
11570277 ATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAATAT
649 ATCATACTGTAGTGGAACTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACAT
* * * *
11570342 CTTAGGGCCTGAGAG-CATACCCAAGAAAGTTCGGTGCCACGGAGCCTACCTAAGAATACATCTT
714 CTTAGGGCCTGAGAGTC-TACCCAAGAAAGTTTGGGGCCACGGGGCCTACCTAAGAACACATCTT
*** * * * *
11570406 AGGGCCACAGGGAGAACCTGAGAATGATCTCAGGGCCGCAGAGTCTACCTAAGAGTCATATTAAG
778 AGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACATTAGG
** * * * *
11570471 TCCATAAAAATTTTCCAGCTTGATCAGAGCTGTAC-TTACAAATCTGTATCTCCAAGATATAGAT
843 TCCATAAAAATTTTTTAGCTTGATCAGAGTTGTACTTTACAAATATGTATCTCCAAGATACAGTT
* * * *
11570535 TATATAATGATATAAATCCATAAGCCATCACTGTTAGGTCGGTGCATCCAT
908 TATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT
* * * *
11570586 AAAACGGTAACAATAGATTTCAGTGAACCACATATTAAAACAATAAAACAATTTTTTAACCCGAT
1 AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT
*
11570651 CCGATCTGGAGTGTCACATTAGGGCGACCAAAGCGACTCACCGTAAAAATAGCGGAAAATTTAAA
66 CCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCGGAAAATTTAAA
*
11570716 ACTTTTCTTAAAACTTGTAAACTCATAACATTATTTATGAGTACAAAATAAAAGTTATCAGTATT
131 ACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATT
* * * *
11570781 TGAAATAAAATAGATTTTCAGACTCATAAATAAAACAAAATACAATTACAAGCCCCCTAATTACA
196 TGAAATAAAATAGATTTTCATACTCATATATAAAACAAAATACAATTAC-ATCCCCCTAATCACA
* * * * *
11570846 TGTACCACACTCTGCAAGCAACGCCGAAAAAACTCCATTATTGATGTCGATAGCTGTATTAGTAC
260 TGTACCATACTCTGCAAGCAACGCCGAAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTAC
* * *
11570911 AATTCTTTTAGCCTGCAATGGTGAGTAATGGAGTGAGCTACGGAAAGCTCTG---T----AA-TA
325 AATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTA
* *
11570968 -C---TGATACTATAGGACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTAAATCAGAC
390 CCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGAC
* * * * *
11571029 ATATACTGATATTCAGAATAATCTGGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGAT
455 ATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGAT
* *
11571094 CTCAGTTCATTAGAAGCATTCATGGTATCACAGTTTCATAAGTTCGAATAGGATGTCTAGTGTGT
520 CTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGTTCGAATAGGATGTCTAGTGTGT
* * *
11571159 TCCAATAGTACGATAAAATCTTAATAGGTACAGTAATCAAATGATAGTTCAATAAATCTCAGAAA
585 TCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAA
* * ** *
11571224 TCATATTGTTGTGGAACTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAAAGAATATC
650 TCATACTGTAGTGGAACTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATC
* * * *
11571289 TTAGGGCCTGAGA-TCATACCCGAGAAAGTTTGGGGCTACAGTGCCTACCTAAGAACACATCTTA
715 TTAGGGCCTGAGAGTC-TACCCAAGAAAGTTTGGGGCCACGGGGCCTACCTAAGAACACATCTTA
* * * * *
11571353 GGGCTACAGAGCCTACCTGAGAATGATCTTAGGGCCGCAGAGCCTACCTAAGAATCACATTAGGT
779 GGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACATTAGGT
** * * ** *
11571418 CCATAAAAATTTTCCAGCTTGCTCAGAGCTGTACTTTACAAACCTGTATCTTCAAGATACAGTTT
844 CCATAAAAATTTTTTAGCTTGATCAGAGTTGTACTTTACAAATATGTATCTCCAAGATACAGTTT
* * *
11571483 ATACAATGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCTAT
909 ATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT
* * * *
11571533 AAAACAGTAACCATAGATTTCAGTGTAACACAAGTTAAAAAAATTAAACAATTTTTTTAACCCGA
1 AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTTTTTAACCCGA
* * **
11571598 TACGATCTGGAGTGTCGCATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAAAAATTTAA
65 TCCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCGGAAAATTTAA
11571663 AACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTAT
130 AACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTAT
* *
11571728 TTGAAATAAAATAGATTTTCATACTCATATATGAAACAAAATACAATTACATGCCCCCTAATTAC
195 TTGAAATAAAATAGATTTTCATACTCATATATAAAACAAAATACAATTACAT-CCCCCTAATCAC
* *
11571793 ATGCACCATACTCTGCAAGCAACGTCGAAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTA
259 ATGTACCATACTCTGCAAGCAACGCCGAAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTA
*
11571858 CAATTCTTTTAACCTACAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACT
324 CAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACT
11571923 ACCA---G--G---T--G--ATGC----AAATTGAAAGCCATATAATTTTCCTTATTGAATCAGA
389 ACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGA
* * * * *
11571972 CATATACCGGTTTTCGGAATAATCTCGGCTTCCAATGGTAGTTAATTAGGTAGAAGCAATAAAGA
454 CATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGA
* * **
11572037 TCTTAGTTCATAAGAAGCATTCACGGTATCATTGTTTCATAAGCTT-GAATAGGATGTCTAGTGT
519 TCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG-TTCGAATAGGATGTCTAGTGT
*
11572101 GTTCCAACAGTACGATAAAAACATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGA
583 GTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGA
* * * * *
11572166 AATTATACTGTAGTGTAGCTTTTTAAAACTTGTATTTAAACCATTGTATAAAGACCTAAGGGAAC
648 AATCATACTGTAGTGGAACTTTTT-AAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAAC
**
11572231 ATCTTAGGGCCTGAGAGTCTACCCAAGAAAGTTCAGGGCCACGGGGCCTACCTAAGAACACATCT
712 ATCTTAGGGCCTGAGAGTCTACCCAAGAAAGTTTGGGGCCACGGGGCCTACCTAAGAACACATCT
* * * **
11572296 TAGGGCCACAGGGCCAACCTGAGAATGATCTCAGGGCCGCAGAGTCTATTTAAGAGTCACATTAG
777 TAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACATTAG
* * * *
11572361 CTCCATAAAAATTTTTGAGCTTGATCAGAGTTGTACTTTACAGATCA-GTTTCTCCAAGATACAG
842 GTCCATAAAAATTTTTTAGCTTGATCAGAGTTGTACTTTACAAAT-ATGTATCTCCAAGATACAG
* * * *
11572425 TTTATACAGTAATACAAATCCATAAGACATCACCGTTAAGTCAGTGCATCCAT
906 TTTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT
* * *
11572478 AAAACAGTAACCATAGATTTCATTGTACCACATTTTAAAACAATAAAATAATTTTTTAACCCGAT
1 AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT
* **
11572543 CCGATCTGGAGTGTTACATTAGGGCCACCAAAATGACTCACCGTAAAAATAGCGGAAAATTTAAA
66 CCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCGGAAAATTTAAA
* * *
11572608 ACTTTTCTTAAAACTTGTAAACTCAAAAAATTATTTATCAGGACAAAATAAAAGTTATCAGTATT
131 ACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATT
* * *
11572673 TGAAATAAAATAGATTTTCATACCCATAAATAAAACAAAATACAATTACATGCACCCTAATCACA
196 TGAAATAAAATAGATTTTCATACTCATATATAAAACAAAATACAATTACAT-CCCCCTAATCACA
* *
11572738 TGTACCATACTCTGCAAGCAATGCCGAAAAAACTCCCTTATTGATGTTGATAGCTGCACTGGTAC
260 TGTACCATACTCTGCAAGCAACGCCGAAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTAC
* * * *
11572803 AATTCTTTTAACTTGCGATGGTGAGTAATGGA-TCTAGCTTCAGAAAGCTCTGTAATACCGAACT
325 AATTCTTTTAACCTGCAATGGTGAGTAATGGAGT-TAGCTTCGGAAAGCTCTGTAATACAGAACT
* *
11572867 ACGAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGA
389 ACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGA
* * * *
11572932 CATATACCGGTTTTTGGAATAATCTCGTGTTCCAATAGTAGTTCATCAAGTATAAGCTATAAAGA
454 CATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGA
* * * * * *
11572997 TGTCAGCTAATAACAAGCATTCATGGTATCACGGTTTAACAAGTTCGAATAGGATGTCTAGTGTG
519 TCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGTTCGAATAGGATGTCTAGTGTG
* *
11573062 TTCAAACAGTACGATAAAATCATAATAGGTACATTAATCAAATGATAGTCCAATAAATCTCAGAA
584 TTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAA
*
11573127 ATCATACTGTAGTGGAACTTTTTAAACTCGTACTTAAACCATCGTATAAAGACCTAAGGGAACAT
649 ATCATACTGTAGTGGAACTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACAT
* * *
11573192 CTTAGGGCCTAAGAGTCTACCCAAGAAAGTTTGGGGCCACGGGGCCAAACTAAGAACACATCTTA
714 CTTAGGGCCTGAGAGTCTACCCAAGAAAGTTTGGGGCCACGGGGCCTACCTAAGAACACATCTTA
* * * *
11573257 GGGCCACAGGTCCTACCCGAGAATGATCTCAGGGCCGTAGAGCCGACCTAAGAGTCATATTAGGT
779 GGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACATTAGGT
**
11573322 CCATAAATTTTTTTTAGCTTGATCAGAGTTGTACTTTACAAATATGTATCTCCAAGATACAGTTT
844 CCATAAAAATTTTTTAGCTTGATCAGAGTTGTACTTTACAAATATGTATCTCCAAGATACAGTTT
* *
11573387 ATATAGTGATACAAATCCATAAGCCTTCACCGTTAAGTCGGTGCATCCGT
909 ATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT
*
11573437 AAAATAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAAC-ATTTTTTAACCCGAT
1 AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT
* * * * * *
11573501 TCGATCTGGAGTGTCATATTAGGGCCACCAAAGTGACTCACCATAAAAAGAGTGGAAAATTTAAA
66 CCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCGGAAAATTTAAA
* *
11573566 ACTATTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTCTCAGTATT
131 ACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATT
* * * * *
11573631 TTAAATAAAATAGATTTTCATACCCATAAATAAAACAAAATACAATTATATCCACCTTAATCACA
196 TGAAATAAAATAGATTTTCATACTCATATATAAAACAAAATACAATTACATCC-CCCTAATCACA
**** *
11573696 TGTACCATACTCTGCAAGCAACTAAAAAAAAACTCCCTTATTGATGTCGATAGCTGCACAGGTAC
260 TGTACCATACTCTGCAAGCAACGCCGAAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTAC
* * *
11573761 AATTCTTTTAACCTGCAATGGTGAGTAATGAAGTTAGCTTCGCAAAGCTCTGTAACACAGAACTA
325 AATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTA
* * *
11573826 CGAGGCGATGCTATAGGACATGCATATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGAC
390 CCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGAC
* * *
11573891 ATATACCGGTTTTCAGAATAATCTCGGGTTCCAATGGTAGTTCATCACGTAGTAGCTATAAAGAT
455 ATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGAT
* * * *
11573956 GTCAGTTAATAAGAAGCATTCATGGTATCACGGTTTCATAAGTTCGAATAGGATGTTTACTGTGT
520 CTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGTTCGAATAGGATGTCTAGTGTGT
*
11574021 TCCAACAGTACGATAAAATCATAATAGGTATC-TTAATCAAATGATTGTTCAATAAATCTCAGAA
585 TCCAACAGTACGATAAAATCATAATAGGTA-CATTAATCAAATGATAGTTCAATAAATCTCAGAA
*
11574085 ATCATACTGTAGTGGAACTTTTTAAACTCGTA-TTGAACCAT--TATAAAGACCTAAGGGAACAT
649 ATCATACTGTAGTGGAACTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACAT
* * *
11574147 CTTAGGGACTGAGAGTCTACCCAAGAAA-TTTCGGCGCCACGGGGCCTACCTAAGAACATATCTT
714 CTTAGGGCCTGAGAGTCTACCCAAGAAAGTTT-GGGGCCACGGGGCCTACCTAAGAACACATCTT
*
11574211 AGGGCCACAGGTCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACATTAGG
778 AGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACATTAGG
* * * * ** * **
11574276 TCTATAAAAATTTTTGATCTTGCTCAGA-TCTGTACTTTACAAACCTGAATCTTGAAGATACAGT
843 TCCATAAAAATTTTTTAGCTTGATCAGAGT-TGTACTTTACAAATATGTATCTCCAAGATACAGT
* * * *
11574340 TTATACATTGATACAAATCCATAAGCCGTCACCGTTAAGTCGATGCATCCAT
907 TTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT
11574392 AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTTAACCCGA
1 AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTTTTTAACCCGA
* *
11574457 ACCGATCTGGAGTCTCACATTAGGGCCA-CACAAGCGACTCACCGTAAAAATAGC-GAAAATTTT
65 TCCGATCTGGAGTGTCACATTAGGGCCACCA-AAGCGACTCACCGTAAAAATAGCGGAAAA-TTT
*
11574520 AAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATAAGTACAAAA-AAAAGTTATCAGT
128 AAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGT
* *
11574584 ATTTGAAATAAAATAGA-TTTCATACCCATATATAAAACAAAATACAATTACATGCCCC---T-A
193 ATTTGAAATAAAATAGATTTTCATACTCATATATAAAACAAAATACAATTACATCCCCCTAATCA
* * *
11574644 -ATGTACCATACTCTGCAAGCAACGCTGGAAAAACTCCCTTATTGATGTCGATAACTGC-CTTGG
258 CATGTACCATACTCTGCAAGCAACGCCGAAAAAACTCCCTTATTGATGTCGATAGCTGCAC-TGG
* * * * * * * *
11574707 TACAGTTCTTTTAAGCTGCAATGGTGAGTAATGAAGTGAGTTTCGAAAATCTCTGTAATACAAAA
322 TACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAA
* *
11574772 CTACCAGGTGATGCTATAAGACATGTAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCA
387 CTACCAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCA
* * * * * * *
11574837 AACATATACCAGTTTTTGGAATGATATGGGGTTCCAATGGTAGTTCACCAAGTAGAAGCTATAAA
452 GACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAA
* * *
11574902 GA--TCAGTTCAT-A-AAGCATTCAT--T-T--C-GTTTTATAAGGTCGAATAGGATGTCTAGTT
517 GATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGTTCGAATAGGATGTCTAGTG
* ** ** * *
11574957 TGTCCCAATGGTACGATAAAATCATAATAGGTACACAAATCAAATAATAGTTCAATAAATCACAG
582 TGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAG
** * * *** **** * * *
11575022 --GGC---CTG-AG-AG-CCTACCTAAGAC-C-TAAGGGAA-CATC-T-T-AAGGCCT--GAGAG
647 AAATCATACTGTAGTGGAACTTTTTAA-ACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAA
** ** * *** ** *
11575071 C--C-TA-CTCAAGAAAGT-T--CGGGGCCA---CGGGGCCTA-----CCTA---AGA-A-CACA
711 CATCTTAGGGCCTGAGAGTCTACCCAAGAAAGTTTGGGGCC-ACGGGGCCTACCTA-AGAACACA
* * *
11575116 TCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGTGCCGTAGAGCCTACTTAAGAGTCACAT
774 TCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACAT
* * * * * * *
11575181 TTGATTCAAAAAAAATTTTGAGCTTGATCAGAGTTGTAATTTACAAATATGTATCTCCAAGATAC
839 TAGGTCCATAAAAATTTTTTAGCTTGATCAGAGTTGTACTTTACAAATATGTATCTCCAAGATAC
* * * * *
11575246 AATTTATACAGTGATACAAATTCATAAGCTATCACCGTTAATTCGGTGCATCCAT
904 AGTTTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT
* * * *
11575301 AAAATAATAACCATTGATTTCAGTGTACCACATGTTAAAACAATAAAA-TATTTTTTAACCCGAT
1 AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT
* ** * * *
11575365 CTGATCTGGAGTGTCACATTAGGGGTACCAAAGTGACTCACCGTAAAAATAGTGAAAAAATTTAA
66 CCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCG-GAAAATTTAA
*
11575430 AACTTTTCTT-AAACTTGTAAACTCTTAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTAT
130 AACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTAT
* * * *
11575494 TTGAAATAAAACAGCTTTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCTAATCA
195 TTGAAATAAAATAG-ATTTTCATACTCATATATAAAACAAAATACAATTACAT-CCCCCTAATCA
* * *
11575559 CATATACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATCGCTGCACTGGT
258 CATGTACCATACTCTGCAAGCAACGCCGAAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGT
* *
11575624 ACAATTCTTTTAACCTACAATGGTGAGTAATGGAGTTAGCTTTGGAAAGCTCTGTAATACAGAAC
323 ACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAAC
*
11575689 TACCAGGTGATGCTATAGGACATGC-GTATAAATTGAAAGCCATATAATTTTCCGTATTGAATCA
388 TACCAGGTGATGCTATAGGACATGCAG-ATAAATTGAAAGCCATATAATTTTCCTTATTGAATCA
* * * * * *
11575753 GGCATATACTGGTTTTCAGAATAATCTCGGCTTCCAATGGCA-TT--TC-A-T-CAAG-TAT-AA
452 GACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAA
* * * * *
11575810 -A--TCAGTTCATAAGAAGCATTCATGGTATCACGGGTTCACAAGGTCGAATAGGATTTCTACTG
517 GATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGTTCGAATAGGATGTCTAGTG
*
11575872 TGTTCCAACAGTACGATAAAATCATAATAGGTATATTAATCAAATGATAGTTCAATAAATCTCAG
582 TGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAG
* * *
11575937 AAATCATACTGTAGTGGAGCTTTTTAAACTTGTATTTAAACCATCGTATAAAGACCTAAGTGAAC
647 AAATCATACTGTAGTGGAACTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAAC
* * * *
11576002 ATCTTAGGGCCTGAGAG-CATACCCAAGAAAGTTTGGGGCCATGAGGCATACCTAAGAACATATC
712 ATCTTAGGGCCTGAGAGTC-TACCCAAGAAAGTTTGGGGCCACGGGGCCTACCTAAGAACACATC
* * * **
11576066 TTAGAGTCATAGGGCCTACCCGAGAATGATCTCAGGGCCGCCTAGCCTACCTAAGAGTCACATTA
776 TTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACATTA
* * *
11576131 GGTCCATAAAAATTTTCTAGCTTGATCTGAGTTGTACTTTACAAATCA-ATATCTCCAAGATACA
841 GGTCCATAAAAATTTTTTAGCTTGATCAGAGTTGTACTTTACAAAT-ATGTATCTCCAAGATACA
* * ** *
11576195 ATTAATATAGTGATACAAATCCATAAGTAATCTCCGTTAAGTCGGTGCATCCAT
905 GTTTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT
* * *
11576249 AAAAACAGTAACCATAGATTTTAGCGTACCACATGTTAAAACAATAAAATAATTTTTTTAACCCG
1 -AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTTTTTAACCCG
* * ** * *
11576314 GTCCAATCTAAAGTGTCACATTAGGGCTACCAAAGCGACTCACCATAAAAA
64 ATCCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAA
11576365 GTTATCAGTA
Statistics
Matches: 5095, Mismatches: 565, Indels: 244
0.86 0.10 0.04
Matches are distributed among these distances:
907 103 0.02
908 49 0.01
909 223 0.04
910 39 0.01
911 7 0.00
912 2 0.00
913 5 0.00
914 2 0.00
915 85 0.02
916 203 0.04
917 7 0.00
918 1 0.00
920 6 0.00
921 2 0.00
922 4 0.00
923 10 0.00
924 6 0.00
925 5 0.00
926 1 0.00
927 5 0.00
928 6 0.00
929 6 0.00
930 10 0.00
931 10 0.00
932 4 0.00
933 4 0.00
934 8 0.00
935 1 0.00
937 4 0.00
938 1 0.00
939 81 0.02
940 7 0.00
942 1 0.00
943 2 0.00
944 545 0.11
945 335 0.07
946 419 0.08
947 126 0.02
948 470 0.09
949 275 0.05
950 5 0.00
951 57 0.01
952 2 0.00
954 8 0.00
955 320 0.06
956 42 0.01
957 469 0.09
958 580 0.11
959 305 0.06
960 227 0.04
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (958 bp):
AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTTAACCCGAT
CCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCGGAAAATTTAAA
ACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTATCAGTATT
TGAAATAAAATAGATTTTCATACTCATATATAAAACAAAATACAATTACATCCCCCTAATCACAT
GTACCATACTCTGCAAGCAACGCCGAAAAAACTCCCTTATTGATGTCGATAGCTGCACTGGTACA
ATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAACTAC
CAGGTGATGCTATAGGACATGCAGATAAATTGAAAGCCATATAATTTTCCTTATTGAATCAGACA
TATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATC
TCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAGTTCGAATAGGATGTCTAGTGTGTT
CCAACAGTACGATAAAATCATAATAGGTACATTAATCAAATGATAGTTCAATAAATCTCAGAAAT
CATACTGTAGTGGAACTTTTTAAACTCGTATTTAAACCATCGTATAAAGACCTAAGGGAACATCT
TAGGGCCTGAGAGTCTACCCAAGAAAGTTTGGGGCCACGGGGCCTACCTAAGAACACATCTTAGG
GCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGCCTACCTAAGAGTCACATTAGGTCC
ATAAAAATTTTTTAGCTTGATCAGAGTTGTACTTTACAAATATGTATCTCCAAGATACAGTTTAT
ATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTGCATCCAT
Found at i:11580241 original size:960 final size:959
Alignment explanation
Indices: 11576378--11592738 Score: 22972
Period size: 957 Copynumber: 17.2 Consensus size: 959
11576368 ATCAGTATTT
*
11576378 GAAAGCTCTTTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
*
11576443 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTGGGGTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * *
11576508 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGCATCATGGTTTTATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* * * *
11576573 GTCGAATATGATATCTAGTGTGTTCCAACATTATGATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* *
11576638 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTACACTCGTATTTAAACTATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * * ** *** *
11576703 ATATAGAGACCTAAAGGAAGTTCTTAGGGCCTGAGAGCCTACTTTAGAAAGTTTGGGGCCACGGA
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * * * * *
11576768 GCCTACCTAAGAAAACATTTTAGGGCCACAGGGCCAATCTGAGAATGATCTCAGGGCCGTAGAGT
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * * *
11576833 CTACCTAAGAGTCACATTAGGTCTA-AAATAAATTTCCAGCTTAATCAGAGCTGTACTTTACAAA
456 CTACCTAAGAGTCACATTAGGTCCATAAA-AATTTTCCAGCTTGATCAGAGTTGTACTTTACAAA
*
11576897 TCTGTATCTCCAAGATATAGATTATATAGTGATACAAATCCAT-----ATCACCGTTAAGTCGGT
520 TCTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGT
* * * * * * *
11576957 GCATCTATAAAAACAATAACCACATATTTTAGCGTACCACATGTTAAAACAATAAAATAATTTTT
585 GCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTTT
* * * *
11577022 TTAACCCGATCCGAGCTAGATTTTCACATTAGGGCCACCAAAACGACTCACCGTAAAAATAG---
649 TTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAA
11577084 AAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTT
714 AAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTT
** *
11577149 ATCAGTATTTGAAATAAAATTGATTTTTAGACTCATATATAAAACAAAATACAATTACATTCCCC
779 ATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCC
* * * * *
11577214 CTAATCACATATACCATACTCCGCAAGCAACGCTGGAAGAAA-TCCCTTATTGGTGTTGATAGCT
844 CTAATCACATGTACCATACTCTGCAAGCAACGCCGGAA-AAACTCCCTTATTGATGTCGATAGCT
* *
11577278 GCATTGGTACAATTCTTTTAACCTACAATGGTGAGTAATGGAGTTAGCTTCG
908 GCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* *
11577330 GAAAGCTCTATAATACTGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * * * * **
11577395 TAATTTTCCTTATTTAATCAGACATATACCAGTTTTTGAAATAATCTCAGTTTCCAATGGTACAT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * *
11577460 CATCCAGAAGAAGCTATAAAGATCTCAATTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* *
11577525 GTCGCATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAAACAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* *
11577590 GATAGTTCAATAAATCTTAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTGAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * ** * *
11577655 GTATAAAGACCGAATGGAACATCTTAGGGCCTGAGAGCCTACTAAAGAACGTTTGGGGCAACGGG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * *
11577720 GCCTACCTAAGAACACATCTTAGGGTCATAGGGCCTACCCGAGAATGATCTCAGGGCCGCATAGC
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * * * *
11577785 CTACCTATGAGTCACATTAGGTCCAAAAAAAATTTCCAACTTGATCAGAGATGTACTTTACAAAT
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
* *
11577850 CTGTATCTCCAAGATATAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTC
521 CTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
*
11577915 CATCCAT-AAAACTGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTT
586 CATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTT
* * * *
11577979 AACCCTATCCGATC-AGGAGTGTCATATTAGGGCCCCCAAAGCAACTCACCGTAAAAATAGCAAA
651 AACCCGATCCGATCTA-GAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAA
* *
11578043 AAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTA-TT-TGAATACAGAATAAAAGTT
715 AAATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTT
* * * * * *
11578106 GTCATTATTTGAAATAAAATAGATTTTTAGACTCAAATATGAAACAAAATACAATTAAATGCCCC
779 ATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCC
* * * * * * *
11578171 C-AACTCACATGTACCATAGTATGCAAGCAACGCTGGAAGAACTGCCTTATTGATGTTGATAGTT
844 CTAA-TCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCT
*
11578235 GCACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATGGAGTTAGCTTCG
908 GCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
11578287 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* ** * *
11578352 TAATTTTCCTTATTGACTCAGACATATATTGATTTTCAGAATAATCT-GGCGTTCCAATGGTAGT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGG-GTTCCAATGGTAGT
11578416 TCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAA
130 TCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAA
*
11578481 GGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACAATAATCAAA
195 GGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAA
* *
11578546 TGATAGTTCAATAAATCTCAGAAATCATACTGTAATGGATCTTTTTAAACTCGTATTTAAACCAT
260 TGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCAT
* * *
11578611 CGTATAAAAACCTAAGGGAACATCATAGGGCCTGAGAGCCTACCCAAGAAAGTTT-GGGCCATGG
325 CGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGG
* * * *
11578675 GGCCTATCTAAGAACACATCTTAGGGCCACAAGACCTACCCGAGAATGATCTCAGGGCCGCATAG
390 GGCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAG
* * *
11578740 CCTACCTAAGAGTCACATTAGGTCCATAAAAAGTTAT--AGCTTGATCAAAGCTGTACTTTACAA
455 CCTACCTAAGAGTCACATTAGGTCCATAAAAA-TTTTCCAGCTTGATCAGAGTTGTACTTTACAA
* * * *
11578803 ATCAGTATCTCCAAGATACA-ATTAATATAGTGATACAAATCCATAAGACATAACCGTTAAGTCA
519 ATCTGTATCTCCAAGATACAGATT-ATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCG
* * * * *
11578867 GTGCATCCATAAAAACAGTAACCACAGATTTTAGCGTACAACATATTAAAACAATAAAACAATTT
583 GTGCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTT
* * * * * *
11578932 TTTAACCTGATCCGATCAACAGTGTCACATTAGGTCCACCAAAACGACTCACCGTAAAAATAGCG
648 TTTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCA
11578997 AAAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGT
713 AAAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGT
* * *
11579062 TTTCAGTATTTTAAATAAAACAGAGTTTTAGACTCATATATAAAACAAAATACAATTACATGCCC
778 TATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCC
* * * * * ** *
11579127 CCTAATCATATGTACTATACGCTGCCAGCAACGTCGGAAAAACAACTTTATTGATGTCGATAGCT
843 CCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCT
* *
11579192 GCACTGGTACAATTCATTTAACCTGCAATGGTGAGTAATGGAGTGAGCTTCG
908 GCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* * * *
11579244 AAAAGCCCTGTAATACAGAACTACAAGGTGATGCTATATGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* *
11579309 TAATTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAATCTCGGCTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* *
11579374 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGGTTCACAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* * *
11579439 GCCGAATAAGATGTCTAGTGTGTTCCAACAGTATGATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* * *
11579504 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGCAGCTTTTTAAACACGTATTTAAACTATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * * * * * * *
11579569 CTATAGAGACCTAAAGGAAGATCTTAGGGCCAGAGAGCTTACTCAAGAAAGTTTGGGGCCACGGA
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * *
11579634 GCCTACCTAAGAACACATCTTAGGGCCACAAGGCCAACCTGAGAATGATCTCAGGGCCAG-AGAG
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCC-GCAGAG
* * * *
11579698 TCTACCTAAGAGTGACATTAGGTCCA-AAATAAATTTCCATCTTGATCAGAGTTGTACTTTACAA
455 CCTACCTAAGAGTCACATTAGGTCCATAAA-AATTTTCCAGCTTGATCAGAGTTGTACTTTACAA
* *
11579762 ATCAGTATCTCCAAGATATAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGG
519 ATCTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGG
* * * * *
11579827 TGCATCCATAAAAATAGTAACCACAGATTTTAGCGTTCCACATGTTAAAACAATAAAACAATTTT
584 TGCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTT
* * * ** *
11579892 TTTTACCTGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAACGACAGACCATAAAAATAGCA
648 TTTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCA
11579957 AAAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGT
713 AAAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGT
*
11580022 TATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTATATGCCC
778 TATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCC
* * * *
11580087 CCTAATCATATATACCATACTCTGTAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGTT
843 CCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCT
* * * **
11580152 GCATTGATACAATTCTTTTAACGTGCAATGGTGAGTAATGGAGAGAGCTTCG
908 GCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* *
11580204 GAAAGCTCTGTAATACAGAACTACCAGGTGTTGCTATAGGACATGCATATATATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * * * *
11580269 TAATTTTCTTTATTTAACCAGACATATACCGGTTTTCGAAATAATCTCAGCTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* *
11580334 CATCAAGTAGAAGCTATAAAAATCTCAGTTCATAAGAAGCATTCATGGTATCATGGTTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* * * *
11580399 GTCAAATAGGATGTCTAGTGTGTTCCAACA-TAATGGTAAAATCATAATATGTACATTAATCAAA
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGT-ACGATAAAATCATAATAGGTACATTAATCAAA
* * * * *
11580463 TGATAGTTCAATACATCTAAGAAATCATACTGTAGTGGAGATTTTTAAACTCGAATTTGAACCAT
260 TGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCAT
**
11580528 CGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTCAGGGCCACGG
325 CGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGG
* ** ** *
11580593 AGCCTACCTAAGAACACATCTTAGGGCCACAGGG-CTAACCTAAGAATGATCTCAGGGATGTAGA
390 GGCCTACCTAAGAACACATCTTAGGGCCACAGGGCCT-ACCCGAGAATGATCTCAGGGCCGCAGA
* *
11580657 GCCTACCTAAGAGTCACA-TAGGTCCATAAAAATTTTCCATCTTGATCAGAGCTGTACTTTACAA
454 GCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAA
* ** * * * * *
11580721 ATCAGTATCTTGAAGATACAGTTTATACAGTGATACAAATCCATAAGTCATCACCCTTAAGTTGG
519 ATCTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGG
* *
11580786 TGCATCCATAAAAACAGTAACCATAGATTTTAGAGTACCACATGTTAAAACAATAAAACAATTTT
584 TGCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTT
* * * * * *
11580851 TTTAACCCGATCTGATATGGAGTGTCATATTAGGGCCACCAACGCGACTCACCTTAAAAATAGCA
648 TTTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCA
* * **
11580916 GAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATAAGTACAAAATAAGGG
713 AAAAATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAG
* * * * *
11580981 TTGTCAGTATTTGAAATCAAACAGATTTTTAGACTCAAATATAAAACAAAATAAAATTAGATG-C
777 TTATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCC
* *
11581045 CCCTAATCACATG-----TA--C--CAAGCAACGCTGGAAGAACTCCCTTATTGATGTCGATAGC
842 CCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGC
* * ** **
11581101 TCCACTGGTACAATTCATTTAACCTAAAATGGTGAGTAATGGAGTTAGCTTAT
907 TGCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* *
11581154 GAAAGCTTTGTAATATAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * **
11581219 TAATTTTCCCTATTGAAACAGACATATACCGGTTTTCGAAATAATCTCGACTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * *
11581284 CATCAAGTATAAACTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGATTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
11581349 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
*
11581414 GATAGTTCAATAAATCTCAGAAATCATACAGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * * *
11581479 GTATAAAGACCTAAGGGAACATCTTACGGCCTGAGAGCCTACCCCAGAAAGTTCGGAGCCACGGG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * * *
11581544 GCCTA-CTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATAATCTGAGGGGCGAAGAGT
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * * *
11581608 CTACCTAAAAGTCACATTAGGTCCATAAAATTTTTCTAGCTTGATCAGAGCTGTACTTTACAAAT
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
11581673 CTGTATCTCCAAGATAC---------AGT--T-----T--AT-----AT-A--GTT-A-----T-
521 CTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
* *
11581705 -A--CAT-AAAATAGTAACCATAGATTTCAGTGTACCACATCTTAAAACAATAAAACAATTTTTT
586 CATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTT
* * * * * **
11581766 AACCCGATCCAATCTGGAGTGTTACATTAGGGCCACCAAAGCGACTAACCATAAAAATAGCGGAA
651 AACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAAA
11581831 AATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTA
716 AATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTA
* * * *
11581896 TCAGTATTTGAAATAAAATAGATTTTCAGACTCATAAATAAAACAAAATACAATTACAAGCCCCC
780 TCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCC
* * * * *
11581961 TAATTACATGTACCACACTCTGCAAGCAACGCCGAAAAAACTCCATTATTGATGTCGATAGCTGT
845 TAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGC
* * * * *
11582026 ATTAGTACAATTCTTTTAGCCTGCAATGGTGAGTAATGGAGTGAGCTACG
910 ACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
*
11582076 GAAAGCTCTG---T----AA-TA-C---TGATGCTATAGGACATGCAGATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * * * *
11582129 TAATTTTCCTTATTAAATCAGACATATACTGATATTCAGAATAATCTGGGGTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* *
11582194 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATTAGAAGCATTCATGGTATCACAGTTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* * * * *
11582259 TTCGAATAGGATGTCTAGTGTGTTCCAATAGTACGATAAAATCGTAATAGGTATAGTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* * *
11582324 GATAGTTCAATAAATCTCAGAAATCATATTGTTGTGGAACTTTTTAAACTCGTATTTAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
** * * * * *
11582389 GTATAAAGACCTAAAAGAACATCTTAGGGCCTAAGATCCTACCCAAGAAAGTTCGGGGCTACAGG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * *
11582454 GCCTACCTAAGAACACATCTTAGGGCTACAGAGCCTACCCGAGAATGATCTTAGGGCCGCAGAGC
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * *
11582519 CTACCTAAGAATCACATTAGGTCCATAAAAATTTTCCAGCTTGCTCAGAGTTGTACTTTACAAAC
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
* * * *
11582584 CTGTATCTTCAAGATACAGTTTATACAATGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
521 CTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
* ** *
11582649 CATCTAT-AAAACAGTAACCATAGATTTCAGTGTACCACAACTTAAAAAAATAAAACAATTTTTT
586 CATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTTTT
* *
11582713 TAACCCGATCCGATCTGGAGTGTCACATTAGGGCCACCAAAGTGACTCACCGTAAAAATAGCAAA
650 TAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAA
*
11582778 AAATTTAAAACTTTTCTTAAAACTTGTAAACTCCTAAAATTATTTATGAGTACAAAATAAAAGTT
715 AAATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTT
* * * *
11582843 ATCAGTATTTGAAATAAAATAGATTTTCATACTCATATATGAAACAAAATACAATTACATGCCCC
779 ATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCC
* * *
11582908 CTAATTACATGTACCATACTCTGCAAGCAACGTCGAAAAAACTCCCTTATTGATGTCGATAGCTG
844 CTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTG
* * *
11582973 CACTGGTACAATTATTTTAACCTGTAATGGTGAGTAATGGAGTGAGCTTCG
909 CACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* * * *
11583024 GAAAACTCTGTAATACATAACTACCAGGTAATGCTATAGGACATGCAAATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* *
11583089 TAATTTTCCTTATTGAATCAGACATATACCGGGTTTCGGAATAATCTCGGGTTCTAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * *
11583154 CATCAAGTAAAAGCTATAAACATGTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* * *
11583219 GTCGAATAAGATTTCTAGTGTGTTCCAACAGTACAATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* * *
11583284 GATAGTTCAATAAATTTCAGAAATCATATTGTAGTGGAGCTTTTGAAACTCGTATTTAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
** * *
11583349 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAACTCGGAGCCACGGG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * * ** * * *
11583414 GCATACCTAAGAACATATCTTAGGGCCAAAGGGCCAACTTGATAATGATCTCAAGGCCGCAGAGT
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* *
11583479 CTACTTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTAATCAGAGTTGTACTTTACAAAT
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
* * * * *
11583544 TTGTTTGTCCAATATACA-ATTTATATAATGATAC-AA---AT----C--CA----TAAGTCGGT
521 CTGTATCTCCAAGATACAGA-TTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGT
** * * *
11583594 GCATCCATAAAATGA-TAACCATAGATTTCAGTGTCCCACATATTAAAATAAT--AA-AA-TTTT
585 GCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTT
* * * * *
11583654 TAACCCGATCTGATCTAGAGTGTCACATTAGGGCTACCAAAGCGACTCACTGTAAAAATAGTAGA
650 TAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAA
*
11583719 AAATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTGCAAAATAAAAGTT
715 AAATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTT
* * * * *
11583784 ATTAGTATTTGAAATAAAAAAGATTTTCATACCCATATATAAAACAAAATACAATTACATG-CCC
779 ATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCC
* * *
11583848 CTAATCACATGTACCATACTCTGCAAGCAACGCCGTAAAAACTCCCTTATTGATGTCGAAAGTTG
844 CTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTG
* *
11583913 C-CTTGGTACAATTCTTTTAACCTGCAATTGTGAGTAATGGAGTGAGCTTCG
909 CAC-TGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* * * * *
11583964 GAAAGCTTTGTAATAC-GTAACTACAAGGTAATACTATAGGACATGCATATAAATTGAAAACCAT
1 GAAAGCTCTGTAATACAG-AACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCAT
* *
11584028 ATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGAAATAATCTCGGCTTCCAATGGTAGT
65 ATAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGT
* * * * * * **
11584093 TAATTAGGTAGAAGCAATAAAGATCTTAGTTCATAAGAAGCATTCACGGTATCATTGTTTCATAA
130 TCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAA
* *
11584158 GGTTGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAAACATAATAGGTACATTAATCAAA
195 GGTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAA
* * *
11584223 TTATAGTTCAATAAATCTCAGAAATCATACTGTAGTGTAGCTTTTTAAAACTTGTATTTAAACCA
260 TGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTT-AAACTCGTATTTAAACCA
* * * *
11584288 TTGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGTCTACCCATGAAAGTTCGGGGCCACG
324 TCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACG
* *
11584353 GGGCCTACCTAAGAACACATCTTAGGGCCACAGGGCCAACCTGAGAATGATCTCAGGGCCGCAGA
389 GGGCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGA
* ** * * ** *
11584418 GTCTATTTAAGAGTCACATTAGCTCCATAAAATTTTTTGAGCTTGATCAGAGTTGTACTTTACAG
454 GCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAA
* * * * * * *
11584483 ATCTGTTTCTCCTAGATACAGTTTATACAGTAATAC--ATCCATAAGACATCACCGTTAAGTCAG
519 ATCTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGG
* * * *
11584546 TGCATCCAT-AAAACGGTAACCATAGATTTCATTGTACCACATTTTAAAACAATAAAATAATTTT
584 TGCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTT
* * * ** **
11584610 TTAACCTGATCCGATCTGGAGTGTTACATTAGGGCCACCAAAATGACTCACCGTAAAAATAGCGG
649 TTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAA
* *
11584675 AAAATTTAAAACTTTTCTTAAAACTTGTAAACTCAAAAAATTATTTATCAGTACAAAATAAAAGT
714 AAAATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGT
* * * * * *
11584740 TATCAGTATTTGAAATAAAATAGATTTTCATACCCATAAATAAAACAAAATACAATTACATGCAC
778 TATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCC
*
11584805 CCTAATCACATGTACCATACTCTGCAAGCAATGCCGGAAAAACTCCCTTATTGATGTCGATAGCT
843 CCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCT
* * * *
11584870 GCACTGGTACAATTCTTTTAACTTGCGATGGTGAGTAATGGATTTAGCTTCA
908 GCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* *
11584922 GAAAGCTCTGTAATACAGAACTACGAGGTGATGCTATAGGACATGCATATAAATTGAAACCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* *
11584987 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTTGGAATAATCTCGGGTTCCAATAGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * * * *
11585052 CATCAAGTAGAAGCTATAAAGATGTCAGCTAATAACAAGCATTCATGGTATCACGGTTTCACAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* *
11585117 TTCGAATAGGATGTCTAGTGTGTTCCAACAGTATGATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* * *
11585182 GATAGTCCAATAAATCTCAGAAATCATACTGTAGTGGAACTTTTTAAACTCGTACTTAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * *
11585247 GTATAAAGACCTAAGGGAACATCTTAGGGCCTAAGAGTCTACCCAAGAAAGTTTGGGGCCACGAG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * * * *
11585312 GCCAAACTAAGAACACATCTTAGGGCGACAGGTCCTACCCGAGAATGATCTCAGGGCCGTATAGC
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * * **
11585377 CGACCTAAGAGTCATATTAGGTCCATAAAATTTTTTTAGCTTGATCAGAGTTGTACTTTACAAAT
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
* * * *
11585442 ATGTATCTCCAAGATACAGCTTATATAGTGATACAAATCCATAAGCCTTCACTGTTAAGTCGGTG
521 CTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
*
11585507 CATCCGT-AAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAAC-ATTTTTT
586 CATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTT
* * * * * **
11585570 AACCCGATTCGATCTGGAGTGTCATATTAGGGCCACCAAAGTGACTCACCGTAAAAAGAGCGGAA
651 AACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAAA
* *
11585635 AATTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAATTTC
716 AATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTA
* * * * * * * *
11585700 TCAGTATTTGAAATAAAATAGATTTTCATACCCATAAATAAAACAAAATACAATTATATGCACCT
780 TCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCC
* **
11585765 TAATCACATGTACCATACTCTGCAAGCAACTCCAAAAAAACTCCCTTATTGATGTCGATAGCTGC
845 TAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGC
*
11585830 ACAGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
910 ACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* * * *
11585880 CAAAGCTCTGTAACACAGAACTACGAGGCGATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
*
11585945 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCAGAATAATCTCGGGTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * * *
11586010 CATCCAGTAGTAGCTATAAAGATGTCAGTTAATAAGAAGCATTCATGGTATCACGGTTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* *
11586075 TTCGAATAGGATGTTTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTATC-TTAATCAAA
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTA-CATTAATCAAA
* * * *
11586139 TGATTGTTCAATAAATCTCAAAAATCATACTGTAGTGGAACTTTTTAAACTCGTATTTGAACCAT
260 TGATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCAT
* * * * *
11586204 TGAATAAAGACCTAAGGGAACATCTTAGGGACTGAGAGTCTACCCAAGAAA-TTTCGGGGCCATG
325 CGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTT-GGGGCCACG
* *
11586268 GGGCCTACCTAAGAACATATCTTAGGGCCACAGGTCCTACCCGAGAATGATCTCAGGGCCGCAGA
389 GGGCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGA
* * *
11586333 GCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCATCTTGCTCAGA-TCAGTACTTTA-A
454 GCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGT-TGTACTTTACA
* * ** * * * *
11586396 AACCTGAATCTTGAAGATACAGTTTATACATTGATACAAATCCATAAGCCGTCACCGTTAAGTCG
518 AATCTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCG
* *
11586461 ATGCATCCAT-AAAACAGTAACCATAGATTTCAGTGTACAACATGTTAAAACAATAAAACAATTT
583 GTGCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA---
* * *
11586525 TTTTTTAACCCGAACCGATCTGGAGTCTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATA
645 TTTTTTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATA
* * *
11586590 GCGAAAATTTTAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTATTTATAAGTACAAAATAA
710 GCAAAAAATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAA
* * * *
11586655 AAGTTATCAGTATTTGAAATAAAATAGATTTTCATACCCATATATAAAACAAAATACAATTACAT
774 AAGTTATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACAT
* * ** *
11586720 GCCCCCTTATCACATGTACCATAC-CATACAATTACATG-C-------C-CCCTTATT-A---C-
839 GCCCCCTAATCACATGTACCATACTC-TGCAAGCA-ACGCCGGAAAAACTCCCTTATTGATGTCG
* * * * * * *
11586770 AT-GC--C-TTGGTACAGTTCTTTTAAGCTGCAATGGTGAGTAATGAAGTGAGTTTCA
902 ATAGCTGCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* * * * * *
11586824 AAAATCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGTAGATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * * * *
11586889 TAATTTTCCTTATTGAATCAAACATATACCAGTTTTTGGAATGATATGGGGTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * *
11586954 CACCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACAGTTTTATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* * * ** **
11587019 GTTGAATAGGATGTCTGGTTTGTTCCAATGGTACGATAAAATCATAATAGGTACACAAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* * * * *
11587084 AATAGTTCAATAAATCAT-AGAATTCATACTGTAGTGGAGATTTTTAAAATCATATTTAAAACCA
261 GATAGTTCAATAAATC-TCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTT-AAACCA
* * *
11587148 TCGTATAAAGACCTAAGGGAACATCTTAAGGCCTGAGAGCCTACTCAAGAAAGTTCGGGGCCACG
324 TCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACG
* *
11587213 GGGCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGTGCCGTAGA
389 GGGCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGA
* * **
11587278 GCCTACCTAAGAGTCACATTTGATCCAT-AAAATTTTTTAGCTTGATCAGAGTTGTACTTTACAA
454 GCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAA
* * * * *
11587342 ATATGTATCTCCAAGATACA-ATTTATACAGTGATACAAATTCATAAGCTATCATCGTTAAGTCG
519 ATCTGTATCTCCAAGATACAGA-TTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCG
* *
11587406 GTGCATCCATAAAATA-A-TAACCATTGATTTCAGTGTACCACATGTTAAAACAATAAAA-TATT
583 GTGCATCCATAAAA-ACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATT
* * *
11587468 TTTTAACCCGATCCGATATGGAGTGTCACATTAGGGCTACCAAAGCGACTCACCGTAAAAATAGT
647 TTTTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAG-
* * *
11587533 GAAAAAATTTAAAACTTTTCTTAAACATGTAAACTCTTAAAATTATTTATGAGTACAAAATAAAA
711 CAAAAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAA
* *
11587598 GTTATCAGTATTTGAAATAAAACAAATTTTTAGACTCATATATAGAACAAAATACAATTACATGC
776 GTTATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGC
* *
11587663 CCCCTAATCACATATACCATACTCTGCATGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAG
841 CCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAG
* * * * *
11587728 CTGAACTGGTACAATTATTTTAACCTACAATGGTAAGTAATAGAGTTAGCTTCG
906 CTGCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* * *
11587782 AAAAGATCTGTAATACAAAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * *
11587847 TAAGTTTCCTTATTGAATCAGACATATACTGGTTTTCGGAATAATCTCGGATTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
*
11587912 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGGTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
*
11587977 GCCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
*
11588042 GATAGTTCAATAAATCTCAGAAATTATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* *
11588107 GTATAAAGACCTAAGGGAACATCTTAGGACCTGAGAGCCTTCCCAAGAAAGTTTGGGGCCACGGG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * * * * *
11588172 GCCTACCTAAGAATACACCTTAGGGCCACAAGACCTACCCGAGAATGTTCTCAGGGCCGTATAGC
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * *
11588237 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTCATCGGAGCTGTACTTTACAAAT
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
* *
11588302 CAGTATCTCCAAGATACA-ATTAATATAGTGATACAAATCCATAAGTCATCACCGTTAAGTCGGT
521 CTGTATCTCCAAGATACAGATT-ATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGT
* * * * *
11588366 GCATCCATAAAAACAATAACCATAGATTTTAGCGTACCACGTGTTAAAACAACAAAACAATTTTT
585 GCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTT
* * * *
11588431 TAACCCGATCCGATCTGGAGTGTCACATTAGGGCCACCAAAGCGACTCACTGTACAAATATCAAA
650 TAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAA
* *
11588496 AAATTTAAAACTTTTCTTAAAATTGTAAACTCATAAAATTATTTATTAGTACAAAATAAAAGTTA
715 AAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTA
11588561 TCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCC
780 TCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCC
* *
11588626 TAATCACATATACCATACTCTGCAAGCAACGTCGGAAAAACTCCCTTATTGATGTCGATAGCTGC
845 TAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGC
*
11588691 ACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATGGAGTTAGCTTCG
910 ACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* * *
11588741 GAAAGCTTTGTAATACAGAATTACCAGGTGATGCTATAGGACATGCGTATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * * *
11588806 TAATTTTCCCTATTGAATCAGGCATATACTGGTTTTCGGAATAATCTCGGCTTCCAATGGCAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* *
11588871 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGGTTCACAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* * *
11588936 GTCGAATAGGATTTCTAGTGTTTTCCAACAGTACGATAAAATCATAATAGGTATATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
*
11589001 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTTGTATTTAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * * * *
11589066 GTATAAAGACCTAAGTGAACATCTTAGGGCATGAGAGCATACCCAAGAAAGTTTGGGGCCATGAG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * * **
11589131 GCATACCTAAGAACATATCTTAGGGTCATAGGGCCTACCCGAGAATGATCTCAGGGCCGCCTAGC
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* *
11589196 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCTAGCTTGATCTGAGTTGTACTTTACAAAT
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
** **
11589261 CAATATCTCCAAGATACA-ATTAATATAGTGATACAAATCCATAAGTAATCACCGTTAAGTCGGT
521 CTGTATCTCCAAGATACAGATT-ATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGT
* *
11589325 GCATCCATAAAAACAGTAACCATAGATTTTAGCGTACCACATGTTAAAACAATAAAACAATTTTT
585 GCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTTT
* * * * *
11589390 TTAACCCGATCTGATC-AGGAGTGGCACATTAGGGCCACCAAAGTGATTCACTGTAAAAATAG-A
649 TTAACCCGATCCGATCTA-GAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCA
* **
11589453 GGAAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAATGTAAAAG
713 -AAAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAG
* *
11589518 TTATCAGTATTTGAAATAAAACAAATTTTTAGAGTCATATATAAAACAAAATACAATTA-ATTGC
777 TTATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACA-TGC
* * *
11589582 CCCCTAATCACATGTACCATACTCTGCAAGCAACGCCAGAAAACCTCCCTTATTGATGTCCATAG
841 CCCCTAATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAG
* * * *
11589647 CTGTACTGGTACAATTCTTTTTACCTGCAAAGGTGAGTAATGGAGTGAGCTTCG
906 CTGCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
*
11589701 GAAAGCTCTTTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
*
11589766 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTGGGGTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * * *
11589831 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGCATCATGGTTTTATACG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
* *
11589896 GTCGAATAGGATATCTAGTGTGTTCCAACAGTATGATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* *
11589961 GACAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACTATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * ** *** *
11590026 GTATATAGACCTAAAGGAAGTTCTTAGGGCCTGAGAGCCTACTTTAGAAAGTTTGGGGCCACGGA
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * * * * * *
11590091 GCCTACCTAATAAAAAATTTTAGGGCCACAGGGCCAACCTGAGAATGATCTCAGGGCCGTAGAGT
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * * *
11590156 CTACCTAAGAGTCACATTAGGTCTA-AAATAAATTTCCAGCTTAATCAGAGCTGTACTTTACAAA
456 CTACCTAAGAGTCACATTAGGTCCATAAA-AATTTTCCAGCTTGATCAGAGTTGTACTTTACAAA
*
11590220 TCTGTATCTCCAAGATATAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGT
520 TCTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGT
* * * * * * *
11590285 GCATCTATAAAAACAATAACCACATATTTTAGCGTACCACATGTTAAAACAATAAAATAAATTTT
585 GCATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAA-CAATTTT
*
11590350 TTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAACGACTCACCGTAAAAATAG---
649 TTAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAA
11590412 AAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTT
714 AAAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTT
*
11590477 ATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATTCCCC
779 ATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCC
* * * * *
11590542 CTAATCACATATACCATACTCCGCAAGCAACGCTGGAAGAAA-TCCCTTATTGGTGTTGATAGCT
844 CTAATCACATGTACCATACTCTGCAAGCAACGCCGGAA-AAACTCCCTTATTGATGTCGATAGCT
* * *
11590606 GCACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATAGAGTTAGCTTCA
908 GCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* *
11590658 GAAAGCTCTATAATACAGAACTACCAGGTGATTCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * * * * *
11590723 TAATTTTCCTTATTTAATCAGACATATATCAGTTTTTGAAATAATCTCAGTTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * * *
11590788 CATCCAGAAGAAGCTATAAAGATCTCAATTCATAAGAAGCATTCATGGTATCATGGTTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
*
11590853 GTCGTATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* *
11590918 GATAGTTCAATAAATCTTAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTGAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * ** * *
11590983 GTATAAAGACCGAATGGAACATCTTAGGG-CTGAGAGCCTACTAAAGAACGTTTGGGGCAACGGG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * * * *
11591047 GCCTACCTAAGAACACATCTTAGGGTCATAGGGCATATCCGAAAATGATCTCAGGGCCGCATAGC
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* * * *
11591112 CTACCTAAGAGTCACATTAGGTCCAAAAAAAATTTCCAACTTGATCAGAGATGTACTTTACAAAT
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
*
11591177 CTGTATCTCCAAGATATAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
521 CTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
* * * * * * *
11591242 CATCTATAAAAACAATAACCACATATTTTAGCGTACCACATGTTAAAACAATAAAATAATTTTTT
586 CATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAA-TTTTT
*
11591307 TAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAACGACTCACCGTAAAAATAG---A
650 TAACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAA
11591369 AAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTA
715 AAATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTA
*
11591434 TCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATTCCCCC
780 TCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCC
* * * * * *
11591499 TAATCACATATACCATACTCCGCAAGCAACACTGGAAGAAA-TCCCGTATTCG-TGTTGATAGCT
845 TAATCACATGTACCATACTCTGCAAGCAACGCCGGAA-AAACTCCCTTATT-GATGTCGATAGCT
*
11591562 GCACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATGGAGTTAGCTTCG
908 GCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
* * * *
11591614 AAAAGCTCTATAATACAGAACTACCAAGTAATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * * * *
11591679 TAATTTTCCTTATTTAATCAGACATATACCAGTTTTTGAAATAATCTCAGTTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
* * *
11591744 CATCTAGAAGAAGCTATAAAGATCTCAATTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
*
11591809 GTCGCATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
196 GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
* *
11591874 GATAGTTCAATAAATCTTAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTGAAACCATC
261 GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
* * * * ** * *
11591939 ATATAAAGACCGAATGGAACATCTTAGGGCTTGAGAGCCTACTAAAGAACGTTTGGGGCAACGGG
326 GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
* * * *
11592004 GCCTACCTAAGAACACATCTTAGGGTCATAGGGCCTACCCGAGAATGATCTCAGGGGCGCATAGC
391 GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
* ** * *
11592069 CTACCTAAGAGTCACATTAGGTCCAAAAAAAAATTCCAACTTGATCAGAGATGTACTTTACAAAT
456 CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
*
11592134 CTGTATCTCCAAGATATAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
521 CTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
*
11592199 CATCCAT-AAAACTGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTT
586 CATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTT
* * ** *
11592263 AACCCGATCCGATC-AGGAGTGTCATATTAGGGCCCCCAAAGTAACTCACCGTAAAAATAGCAGA
651 AACCCGATCCGATCTA-GAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAA
* *
11592327 AAATTCAAAACTTTTCTTAAAACTTGTAAACTCATAAAATTA-TT-TGAATACAAAATAAAAGTT
715 AAATTTAAAACTTTTCTT-AAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTT
* * * * *
11592390 GTCATTATTTGAAATAAAACAGATTTTTAGACTCAAATATGAAACAAAATACAATTAAATGCCCC
779 ATCAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCC
* * * * *
11592455 C-AACTCACATGTACCATACTATGCAAGCAACGCTGGAAGAACTGCCTTATTGATGTTGATAGCT
844 CTAA-TCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCT
*
11592519 GCACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATGGAGTTAGCTTCG
908 GCACTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
11592571 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
1 GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
* * * * * *
11592636 TAATTTTACTTATTGAATCAGACATATATCGGTTTTTGGAATGATATGGGGTTCCAATGGTAGTT
66 TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
**
11592701 CGCCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
131 CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
11592739 TCTCCCTTAT
Statistics
Matches: 13870, Mismatches: 1347, Indels: 379
0.89 0.09 0.02
Matches are distributed among these distances:
910 332 0.02
911 126 0.01
912 175 0.01
913 61 0.00
914 5 0.00
915 2 0.00
916 1 0.00
918 2 0.00
919 1 0.00
920 3 0.00
922 87 0.01
923 1 0.00
924 2 0.00
926 1 0.00
927 3 0.00
929 2 0.00
932 2 0.00
934 3 0.00
935 1 0.00
937 3 0.00
938 1 0.00
939 2 0.00
940 384 0.03
941 591 0.04
942 20 0.00
943 6 0.00
944 343 0.02
945 252 0.02
946 55 0.00
947 58 0.00
948 306 0.02
949 74 0.01
950 505 0.04
951 2 0.00
952 511 0.04
953 61 0.00
954 10 0.00
955 233 0.02
956 1235 0.09
957 2847 0.21
958 1704 0.12
959 1387 0.10
960 2254 0.16
961 215 0.02
962 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (959 bp):
GAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATA
TAATTTTCCTTATTGAATCAGACATATACCGGTTTTCGGAATAATCTCGGGTTCCAATGGTAGTT
CATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGGTATCACGGTTTCATAAG
GTCGAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAATAGGTACATTAATCAAAT
GATAGTTCAATAAATCTCAGAAATCATACTGTAGTGGAGCTTTTTAAACTCGTATTTAAACCATC
GTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCCAAGAAAGTTTGGGGCCACGGG
GCCTACCTAAGAACACATCTTAGGGCCACAGGGCCTACCCGAGAATGATCTCAGGGCCGCAGAGC
CTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAGTTGTACTTTACAAAT
CTGTATCTCCAAGATACAGATTATATAGTGATACAAATCCATAAGCCATCACCGTTAAGTCGGTG
CATCCATAAAAACAGTAACCATAGATTTCAGTGTACCACATGTTAAAACAATAAAACAATTTTTT
AACCCGATCCGATCTAGAGTGTCACATTAGGGCCACCAAAGCGACTCACCGTAAAAATAGCAAAA
AATTTAAAACTTTTCTTAAACTTGTAAACTCATAAAATTATTTATGAGTACAAAATAAAAGTTAT
CAGTATTTGAAATAAAACAGATTTTTAGACTCATATATAAAACAAAATACAATTACATGCCCCCT
AATCACATGTACCATACTCTGCAAGCAACGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCA
CTGGTACAATTCTTTTAACCTGCAATGGTGAGTAATGGAGTTAGCTTCG
Found at i:11582490 original size:32 final size:32
Alignment explanation
Indices: 11582444--11582535 Score: 105
Period size: 31 Copynumber: 2.9 Consensus size: 32
11582434 AGAAAGTTCG
*
11582444 GGGCTACAGGGCCTACCTAAGAACACATCTTA
1 GGGCTACAGAGCCTACCTAAGAACACATCTTA
** **
11582476 GGGCTACAGAGCCTACCCGAGAA-TGATCTTA
1 GGGCTACAGAGCCTACCTAAGAACACATCTTA
**
11582507 GGGCCGCAGAGCCTACCTAAGAATCACAT
1 GGGCTACAGAGCCTACCTAAGAA-CACAT
11582536 TAGGTCCATA
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
31 25 0.53
32 20 0.43
33 2 0.04
ACGTcount: A:0.30, C:0.28, G:0.24, T:0.17
Consensus pattern (32 bp):
GGGCTACAGAGCCTACCTAAGAACACATCTTA
Found at i:11593064 original size:372 final size:372
Alignment explanation
Indices: 11592379--11593110 Score: 1135
Period size: 372 Copynumber: 2.0 Consensus size: 372
11592369 TTTGAATACA
* * * * *
11592379 AAATAAAAGTTGTCATTATTTGAAATAAAACAGATTTTTAGACTCAAATATGAAACAAAATACAA
1 AAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACCCAAATATAAAACAAAATACAA
* * *
11592444 TTAAATGCCCCCAACTCACATGTACCATACTATGCAAGCAACGCTGGAAGAACTGCCTTATTGAT
66 TTAAATACCCCCAACTCACATGTACCATACTATGCAAGCAACGCTGGAAAAACTCCCTTATTGAT
* * * * *
11592509 GTTGATAGCTGCACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATGGAGTTAGCTTCGGAA
131 GTCGATAACTGCACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATGAAGTGAGCTTCGAAA
* * *
11592574 AGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCATATAAATTGAAAGCCATATAA
196 AGCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAA
* * * *
11592639 TTTTACTTATTGAATCAGACATATATCGGTTTTTGGAATGATATGGGGTTCCAATGGTAGTTCGC
261 TTTTACTTATTGAATCAAACATATACCAGTTTTTGGAATGATATGGGGTTCCAATGGTAGTTCAC
11592704 CAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAATCTCCCTTATTG
326 CAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAATCTCCCTTATTG
* * *
11592751 AAATAAAAGTTATCAGTATTTGAAATAAAATAGATTTTCATACCCATATATAAAACAAAATACAA
1 AAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACCCAAATATAAAACAAAATACAA
* * *
11592816 TTACATACCCCCTTA-TCACATGTACCATACTCTGCAAGCAACGCTGGAAAAACTCCCTTATTGA
66 TTAAATACCCCC-AACTCACATGTACCATACTATGCAAGCAACGCTGGAAAAACTCCCTTATTGA
* * * *
11592880 TGTCGATAACTGC-CTTGGTACAGTTCTTTTAAGCTGCAATGGTGAGTAATGAAGTGAGTTTCGA
130 TGTCGATAACTGCAC-TGGTACAATTCTTTTAACCTACAATGGTGAGTAATGAAGTGAGCTTCGA
* *
11592944 AAATCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGTAGATAAATTGAAAGCCATAT
194 AAAGCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATAT
*
11593009 AATTTTCCTTATTGAATCAAACATATACCAGTTTTTGGAATGATATGGGGTTCCAATGGTAGTTC
259 AATTTTACTTATTGAATCAAACATATACCAGTTTTTGGAATGATATGGGGTTCCAATGGTAGTTC
11593074 ACCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
324 ACCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAA
11593111 GCATTCATGG
Statistics
Matches: 325, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
371 1 0.00
372 323 0.99
373 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (372 bp):
AAATAAAAGTTATCAGTATTTGAAATAAAACAGATTTTCAGACCCAAATATAAAACAAAATACAA
TTAAATACCCCCAACTCACATGTACCATACTATGCAAGCAACGCTGGAAAAACTCCCTTATTGAT
GTCGATAACTGCACTGGTACAATTCTTTTAACCTACAATGGTGAGTAATGAAGTGAGCTTCGAAA
AGCTCTGTAATACAAAACTACCAGGTGATGCTATAAGACATGCAGATAAATTGAAAGCCATATAA
TTTTACTTATTGAATCAAACATATACCAGTTTTTGGAATGATATGGGGTTCCAATGGTAGTTCAC
CAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAATCTCCCTTATTG
Found at i:11596196 original size:956 final size:956
Alignment explanation
Indices: 11593367--11596874 Score: 5080
Period size: 949 Copynumber: 3.7 Consensus size: 956
11593357 GGCCACAGGT
* * * * * *
11593367 TACAAATTCATAAGCTATCACCGTTAAGTCGGTGCATCCATAAAATAATAACCATTGATTTCAGT
1 TACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTCAGT
* * *
11593432 GTACCACATGTTAAAACAATAAAATATTTTTTAACCCGATCCGATCTGGAGTGTTACAGTAGGGC
66 GTACCACATGTTAAAACAATAAAACATTTTTTAACCCGATCCGATCTGGAGTGTCACATTAGGGC
* *
11593497 CACTGAAGCGACTCACCGTAAAAATAGCGGAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCA
131 CACCGAAGCGACTCACCGTAAAAATAGCAGAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCA
* * *
11593562 TAATATTATTTATAAGTACAAAATAAAAGTTATCAGTATTTGAAATAAAATTGATTTTTAGACTC
196 TAAAATTATTTATAAGTACAAAATAAAAGTTATAAGTATTTGAAATAAAATAGATTTTTAGACTC
*
11593627 ATATATAAAACAAAATAAAATTACATGCCCCATAATCACAAGTACCATACTCTGCAAGCAACGCC
261 ATATATAAAACAAAATAAAATTACATGCCCCATAATCACATGTACCATACTCTGCAAGCAACGCC
* * *
11593692 GGAAAAACTCCCTTATTTATGTCGATAGCTTCCGTGGTACAATTCTTTTAACCTGCAATGGTGAG
326 GGAAAAACTCCCTTATTGATGTCGATAGCTGCCCTGGTACAATTCTTTTAACCTGCAATGGTGAG
*
11593757 TAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACTAGGTGATGCTATAGGACATGCAG
391 TAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAG
* * *
11593822 ATAAATTGAAAGCAATATAATTTTCTTAATTTAATCAGACATATACTGGTTTTCAGAATAATCTC
456 ATAAATTGAAAGCCATATAATTTTCTTAATTAAATCAGACATATACCGGTTTTCAGAATAATCTC
* * * *
11593887 AGGTTCCAATGATAGTTCATCAAGAAGAAGCTATAAAGATCTCAGTTCATATGAAGCATTCATGG
521 GGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGG
* * * * * *
11593952 TATCGTGGTTTTATAAGGTCGAATAGGATGTCTAGTTTGTTGCAACGGTACGATAAAATCATAAT
586 TATCATGGTTTCATAAGGTCAAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAAT
* * * * *
11594017 AGGTACACAAATCAAATAATAGTTCAATAAATCTCATAATTCATATTGTAGTGGAGCTATTTAAA
651 AGGTACACTAATCAAATGATAGTTCAATAAATCTCATAAATCATACTGTAGTGGAGCTTTTTAAA
* * * * *
11594082 ATCATATTTAAAACCATCGTATAAAGACCTAAGGGAATATCATAGGGCCTAAGAGCCTATCCAAG
716 CTCGTATTTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTA-CCAAG
* * * * * *
11594147 AAAGTTTGGGGCCACGGGGCCTACCTATGAAAAAATCTTAGGGCCACAGGGCGTACCCGAGAATG
780 AAAGTTCGGGGCCACGGGGCCTA-CTAAGAACACATCTTAGGGCCACAAGGCCTACCCGAGAATG
* ** *
11594212 ATCTCAGGGCCGTAGAGCTGACCTAAGAGTCATATTAGGTGTATAAAAAAATTT-CAGCTTGATC
844 ATCTCAGGGCCGAAGAGCT-ACCTAAGAGTCATATTAGGTCCAT-AAAAATTTTCCAGCTTGATC
* * *
11594276 AGAGTTATACTTTGCAAATATGTATCTCCAAGATACAGTTTATACAGTGA
907 AGAGTTGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACAGTGA
* * * * * *
11594326 TACAAATCCATATGCTATCAC-CTTAAGTCGGTGCATCCATAAAACAGAAACCACAGATTTCAGC
1 TACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTCAGT
**
11594390 GTACCACATGTTAAAACAATAAAACA-TTTTTAACCCGATTTGATCTGGAGTGTCACATTAGGGC
66 GTACCACATGTTAAAACAATAAAACATTTTTTAACCCGATCCGATCTGGAGTGTCACATTAGGGC
* * * * *
11594454 CACTGAAGCGACTCACTGTAAAAATAGCATAAAATTTAAAACATTTCTTAAAACTTGTAAAGTCA
131 CACCGAAGCGACTCACCGTAAAAATAGCAGAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCA
* *
11594519 TAAAATTATTTATCAGTACAAAATAAAAGTTATCAA-TATTTGAAATAAAACAGATTTTTAGACT
196 TAAAATTATTTATAAGTACAAAATAAAAGTTAT-AAGTATTTGAAATAAAATAGATTTTTAGACT
* * * * *
11594583 CATATATAAAACAAAATACAATTACATACCCCCTAATCATATGTACCATAATCTGCAAGCAACGC
260 CATATATAAAACAAAATAAAATTACATGCCCCATAATCACATGTACCATACTCTGCAAGCAACGC
* * * * * *
11594648 CGGAAAAACTCCCTTATTGATTTCAATAGTTGCACTGGTACAATTGTTTTAACCTGTAATGGTGA
325 CGGAAAAACTCCCTTATTGATGTCGATAGCTGCCCTGGTACAATTCTTTTAACCTGCAATGGTGA
* *
11594713 GTAATGGAGTGAGCTTCGGAAAGCTCTGTAAAACAAAACTACCAGGTGATGCTATAGGACATGCA
390 GTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCA
* * * * *
11594778 GATATATTGAAAGCCATATAATTTTCCTT-A-T---T-A-A-AT-TACTGATTTTCGGATTAATC
455 GATAAATTGAAAGCCATATAATTTT-CTTAATTAAATCAGACATATACCGGTTTTCAGAATAATC
* * *
11594834 TAGGGTTCCAATGGTAGTTAATCAAGTAGAAGCTATAAGGATCTCAGTTCATAAGAAGCATTCAT
519 TCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCAT
* * * *
11594899 GGTATCACGGTTTCATAAGGTCGAATAGGATGTGTAATGTGTTCCAACAGTACGATAAAATCATA
584 GGTATCATGGTTTCATAAGGTCAAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATA
*
11594964 ATAGGTACACTAATCAAATGATAGTTCAATAAATCTCATAGATCATACTGTAGTGGAGCTTTTTA
649 ATAGGTACACTAATCAAATGATAGTTCAATAAATCTCATAAATCATACTGTAGTGGAGCTTTTTA
*
11595029 AACTCGTATTTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGACC-GATAG-CTAACC
714 AACTCGTATTTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGG-CCTGAGAGCCT-A-C
* *
11595092 CAAGAAAGTTCGGGGCCACGGGGCCTACTAAGAACGCATCTTAGGGCCAC-AGTTCCTACCCGAG
776 CAAGAAAGTTCGGGGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAAG-GCCTACCCGAG
* * *
11595156 AATGAT-TCGAGGGCCGAAGAGGCTACCTAAAAGTCTTATTAGGTCCATAAAAATTTTCTAGCTT
840 AATGATCTC-AGGGCCGAAGA-GCTACCTAAGAGTCATATTAGGTCCATAAAAATTTTCCAGCTT
* * * *
11595220 GCTCAGA-TCTGTACTTTACAAACCTGTATCTTCAAGATACAGTTTATACATTGA
903 GATCAGAGT-TGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACAGTGA
11595274 TACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTCAGT
1 TACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTCAGT
* * *
11595339 GTACCACATGTTAAAACAATAAAATATTTTTTAACCTGATCCGATCTGGAGTGTTACATTAGGGC
66 GTACCACATGTTAAAACAATAAAACATTTTTTAACCCGATCCGATCTGGAGTGTCACATTAGGGC
* *
11595404 CACCGAAGCGACTCACCGTAAAAATAGCAGAAAATATAAAACTTTTCTTAAAACTTGTAAACTCG
131 CACCGAAGCGACTCACCGTAAAAATAGCAGAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCA
* *
11595469 TAATATTA-TTATAAGTACAAAATAAAAGTTATAAGTATTTGAAATAAAATAGATTTTTAGGCTC
196 TAAAATTATTTATAAGTACAAAATAAAAGTTATAAGTATTTGAAATAAAATAGATTTTTAGACTC
*
11595533 ATATATAAAACAAAATAAAATTACATGCCCCATAATCACATGTACCATACTCTGCAAGCAACGTC
261 ATATATAAAACAAAATAAAATTACATGCCCCATAATCACATGTACCATACTCTGCAAGCAACGCC
* * * *
11595598 GAAAAAACTCCGTTATTGATGTCGATAGCTGCCCTGGAACAATTCTTTTAACCTGTAATGGTGAG
326 GGAAAAACTCCCTTATTGATGTCGATAGCTGCCCTGGTACAATTCTTTTAACCTGCAATGGTGAG
* * * * *
11595663 TAAAT-GAGTGAGCTTTGGAAATCTCTGTAATACAGAACTACCCGGTGATGCTATAAGACATGTA
391 T-AATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCA
* *
11595727 GATAAATTGAAAGCCATATAATTTTCCTT-ATTAAATCAGACATATACCGGTATTC-GAAAAAAT
455 GATAAATTGAAAGCCATATAATTTT-CTTAATTAAATCAGACATATACCGGTTTTCAG-AATAAT
* *
11595790 CT-GGGTTCCAATAGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCCTTCA
518 CTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCA
* *
11595854 TGGTATCATGGCTTCATAAGGTTAAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCAT
583 TGGTATCATGGTTTCATAAGGTCAAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCAT
* * *
11595919 AATAGGTACACTAATCAAATGATAGCTCAATAAATCTCAGAAATCATACTATAGTGGAGCTTTTT
648 AATAGGTACACTAATCAAATGATAGTTCAATAAATCTCATAAATCATACTGTAGTGGAGCTTTTT
* *
11595984 AAACTCGTATTTAAAACTATCGTATAAAGACCTAAGGGAACATCTTATGGCCTGAGAGCCTACCT
713 AAACTCGTATTTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACC-
* * *
11596049 AAGAAAGTTCGGGGCTACGGGGCTTTA-TAGGAACACATCTTAGGGCCACAAGGCCTACCCGAGA
777 AAGAAAGTTCGGGGCCACGGGGC-CTACTAAGAACACATCTTAGGGCCACAAGGCCTACCCGAGA
*
11596113 ATGATCTCAGGGCCGAAGAGCCTACCTAAGAGTCACATTAGGTCCATAAAAATTTTCCAGCTTGA
841 ATGATCTCAGGGCCGAAGAG-CTACCTAAGAGTCATATTAGGTCCATAAAAATTTTCCAGCTTGA
* *
11596178 TCAGAGTTGTAATTTACAAATCTGTATCTCCAAGATAAAGTTTATACAGTGA
905 TCAGAGTTGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACAGTGA
* *
11596230 TACAAACCCATAAGCCATCACTGTTAAGTAGGTGCATCCATAAAACAGTAACCATAGATTTCAGT
1 TACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTCAGT
* *
11596295 GTACCACATGTTAAAATAATAAAACATTTTTTAACCCGATCC-ACTCTGGAGTGTCATATTAGGG
66 GTACCACATGTTAAAACAATAAAACATTTTTTAACCCGATCCGA-TCTGGAGTGTCACATTAGGG
* * * *
11596359 CTACCAAAGCAAC-C-CCTTGTAAAAATCGCAGAAAATTTAAAACTTTTCTTAAAACTTGTAAAC
130 CCACCGAAGCGACTCACC--GTAAAAATAGCAGAAAATTTAAAACTTTTCTTAAAACTTGTAAAC
* * * *
11596422 TCATAAAATTATTTATGAGTAC-AAA-AAAAGTTATCAGTATTTGAAATAAAATAGATTTTCATA
193 TCATAAAATTATTTATAAGTACAAAATAAAAGTTATAAGTATTTGAAATAAAATAGATTTTTAGA
* * *
11596485 C-CGATATATAAAACAAAATACAATTATATGCCCCCTAATCACATGTACCATACTCTGCAAGCAA
258 CTC-ATATATAAAACAAAATAAAATTACATGCCCCATAATCACATGTACCATACTCTGCAAGCAA
* *
11596549 CGCCGGAAAAACTCCCTTATTGATGTCGATAGCTG-CCTAGTATAATTCTTTTAACCTGCAATGG
322 CGCCGGAAAAACTCCCTTATTGATGTCGATAGCTGCCCTGGTACAATTCTTTTAACCTGCAATGG
* * *
11596613 TGAGTAATGGAGTTAGCTTCGGAAAGCTCTGTAATACAGAATTACCAGGTGATGATATAGGACAT
387 TGAGTAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACAT
* *
11596678 GCAGATAAATTGAAAGCCATATAATTTTCTTAATTGAATCAGACATATACCAGTTTTCAGAATAA
452 GCAGATAAATTGAAAGCCATATAATTTTCTTAATTAAATCAGACATATACCGGTTTTCAGAATAA
*
11596743 TCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAATATCTCAGTTCATAAGAAGCATTC
517 TCTCGGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTC
* ** * *
11596808 ATGGTATCATGGTTTCATAAGGTCAAATAGGATGTCTAGTTTGTTCCAATGGTACGGTAAACTCA
582 ATGGTATCATGGTTTCATAAGGTCAAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCA
11596873 TA
647 TA
11596875 TTTAAAACCA
Statistics
Matches: 2281, Mismatches: 229, Indels: 82
0.88 0.09 0.03
Matches are distributed among these distances:
947 12 0.01
948 137 0.06
949 582 0.26
950 107 0.05
951 1 0.00
952 1 0.00
953 8 0.00
954 140 0.06
955 252 0.11
956 573 0.25
957 384 0.17
958 65 0.03
959 19 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (956 bp):
TACAAATCCATAAGCCATCACTGTTAAGTCGGTGCATCCATAAAACAGTAACCATAGATTTCAGT
GTACCACATGTTAAAACAATAAAACATTTTTTAACCCGATCCGATCTGGAGTGTCACATTAGGGC
CACCGAAGCGACTCACCGTAAAAATAGCAGAAAATTTAAAACTTTTCTTAAAACTTGTAAACTCA
TAAAATTATTTATAAGTACAAAATAAAAGTTATAAGTATTTGAAATAAAATAGATTTTTAGACTC
ATATATAAAACAAAATAAAATTACATGCCCCATAATCACATGTACCATACTCTGCAAGCAACGCC
GGAAAAACTCCCTTATTGATGTCGATAGCTGCCCTGGTACAATTCTTTTAACCTGCAATGGTGAG
TAATGGAGTGAGCTTCGGAAAGCTCTGTAATACAGAACTACCAGGTGATGCTATAGGACATGCAG
ATAAATTGAAAGCCATATAATTTTCTTAATTAAATCAGACATATACCGGTTTTCAGAATAATCTC
GGGTTCCAATGGTAGTTCATCAAGTAGAAGCTATAAAGATCTCAGTTCATAAGAAGCATTCATGG
TATCATGGTTTCATAAGGTCAAATAGGATGTCTAGTGTGTTCCAACAGTACGATAAAATCATAAT
AGGTACACTAATCAAATGATAGTTCAATAAATCTCATAAATCATACTGTAGTGGAGCTTTTTAAA
CTCGTATTTAAAACCATCGTATAAAGACCTAAGGGAACATCTTAGGGCCTGAGAGCCTACCAAGA
AAGTTCGGGGCCACGGGGCCTACTAAGAACACATCTTAGGGCCACAAGGCCTACCCGAGAATGAT
CTCAGGGCCGAAGAGCTACCTAAGAGTCATATTAGGTCCATAAAAATTTTCCAGCTTGATCAGAG
TTGTACTTTACAAATCTGTATCTCCAAGATACAGTTTATACAGTGA
Found at i:11596983 original size:32 final size:31
Alignment explanation
Indices: 11596942--11597028 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 31
11596932 AGAAAGTTTG
11596942 GGGCCACAGGGCCTACCTAAGAATAAATCTTA
1 GGGCCACAGGGCCTACCTAAGAAT-AATCTTA
** * *
11596974 GGGCCACAGGGAGTACCCT-AGAATGATCTTG
1 GGGCCACAGGGCCTA-CCTAAGAATAATCTTA
* * *
11597005 GGGCAATAGAGCCTACCTAAGAAT
1 GGGCCACAGGGCCTACCTAAGAAT
11597029 CACATTAGGT
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
30 3 0.07
31 20 0.45
32 18 0.41
33 3 0.07
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.18
Consensus pattern (31 bp):
GGGCCACAGGGCCTACCTAAGAATAATCTTA
Found at i:11603224 original size:2 final size:2
Alignment explanation
Indices: 11603217--11603253 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
11603207 CTTTTAATTG
11603217 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11603254 ATTCAGAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11614151 original size:18 final size:17
Alignment explanation
Indices: 11614128--11614192 Score: 66
Period size: 18 Copynumber: 3.9 Consensus size: 17
11614118 GTCACAACTC
11614128 GACCCGACCCGTTGACCT
1 GACCCGACCCGTTGA-CT
11614146 GACCCGACCCGTT---T
1 GACCCGACCCGTTGACT
* *
11614160 -ACTCGACCCGTTGAAT
1 GACCCGACCCGTTGACT
11614176 CGACCCGACCCGTTGAC
1 -GACCCGACCCGTTGAC
11614193 CGTTGACCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 1 0.03
18 26 0.67
ACGTcount: A:0.18, C:0.42, G:0.22, T:0.18
Consensus pattern (17 bp):
GACCCGACCCGTTGACT
Found at i:11614206 original size:15 final size:15
Alignment explanation
Indices: 11614182--11614215 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
11614172 GAATCGACCC
*
11614182 GACCCGTTGACCGTT
1 GACCCATTGACCGTT
11614197 GACCCATTGACCGTT
1 GACCCATTGACCGTT
11614212 GACC
1 GACC
11614216 GGAGTTGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.35, G:0.24, T:0.24
Consensus pattern (15 bp):
GACCCATTGACCGTT
Found at i:11616756 original size:12 final size:12
Alignment explanation
Indices: 11616735--11616796 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
11616725 ATGACATGAA
11616735 TTCTGTTCTGAT
1 TTCTGTTCTGAT
*
11616747 TTCTGATCTGGA-
1 TTCTGTTCT-GAT
11616759 TTCTGTTCTGAT
1 TTCTGTTCTGAT
* *
11616771 ATCTGTTCTGAA
1 TTCTGTTCTGAT
*
11616783 TTCTGTTTTGAT
1 TTCTGTTCTGAT
11616795 TT
1 TT
11616797 ATGATATCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
11 2 0.05
12 37 0.90
13 2 0.05
ACGTcount: A:0.13, C:0.15, G:0.18, T:0.55
Consensus pattern (12 bp):
TTCTGTTCTGAT
Found at i:11616761 original size:24 final size:24
Alignment explanation
Indices: 11616693--11616801 Score: 105
Period size: 24 Copynumber: 4.5 Consensus size: 24
11616683 AAATATTTTA
*
11616693 TCTGATTTCCGA-CTTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGT
***
11616717 TCTGATAAATGA-CATGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGT
*
11616741 TCTGATTTCTGATCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* *
11616765 TCTGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* *
11616789 TTTGATTTATGAT
1 TCTGATTTCTGAT
11616802 ATCTTCGTTT
Statistics
Matches: 68, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
24 67 0.99
25 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.17, T:0.48
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTCTGT
Found at i:11618113 original size:18 final size:18
Alignment explanation
Indices: 11618090--11618150 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
11618080 CACATATATC
11618090 ATCATTATCAACATCAAT
1 ATCATTATCAACATCAAT
* ** **
11618108 ATCATTGTCATGATTTAT
1 ATCATTATCAACATCAAT
*
11618126 ATCATTCTCAACATCAAT
1 ATCATTATCAACATCAAT
11618144 ATCATTA
1 ATCATTA
11618151 ATAATGCAAA
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.39
Consensus pattern (18 bp):
ATCATTATCAACATCAAT
Found at i:11618395 original size:21 final size:21
Alignment explanation
Indices: 11618369--11618427 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
11618359 TAAGAATCAC
*
11618369 ATATATATTCCAAAGGACCAA
1 ATATATGTTCCAAAGGACCAA
* * **
11618390 ATATATGTCCCAAAGAACCGC
1 ATATATGTTCCAAAGGACCAA
11618411 ATATATGTTCCAAAGGA
1 ATATATGTTCCAAAGGA
11618428 TTACATGTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (21 bp):
ATATATGTTCCAAAGGACCAA
Found at i:11619572 original size:30 final size:30
Alignment explanation
Indices: 11619538--11619594 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
11619528 TATACATCCA
11619538 TTCCC-AACTTTTTCAAAAATTACAAATTGG
1 TTCCCTAAC-TTTTCAAAAATTACAAATTGG
11619568 TTCCCTAACTTTTCAAAAATTACAAAT
1 TTCCCTAACTTTTCAAAAATTACAAAT
11619595 GGTCCGTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.37
Consensus pattern (30 bp):
TTCCCTAACTTTTCAAAAATTACAAATTGG
Found at i:11625411 original size:18 final size:18
Alignment explanation
Indices: 11625388--11625448 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
11625378 CACATATATC
11625388 ATCATTATCAACATCAAT
1 ATCATTATCAACATCAAT
** ***
11625406 ATCATTATCATGATTTCT
1 ATCATTATCAACATCAAT
*
11625424 ATCATTCTCAACATCAAT
1 ATCATTATCAACATCAAT
11625442 ATCATTA
1 ATCATTA
11625449 ATAATGCAAA
Statistics
Matches: 31, Mismatches: 12, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.39
Consensus pattern (18 bp):
ATCATTATCAACATCAAT
Found at i:11625764 original size:21 final size:21
Alignment explanation
Indices: 11625677--11625765 Score: 79
Period size: 21 Copynumber: 4.2 Consensus size: 21
11625667 CGTAAGAATT
*
11625677 ACATATATATTCCAAAGGACC
1 ACATATATATCCCAAAGGACC
* * * * *
11625698 AAATATGTGTCCCGAAGAACC
1 ACATATATATCCCAAAGGACC
* * * **
11625719 GCATATATGTTCCAAAGGATT
1 ACATATATATCCCAAAGGACC
11625740 ACATATATATCCCAAAGGACC
1 ACATATATATCCCAAAGGACC
11625761 ACATA
1 ACATA
11625766 GAACTCTTTA
Statistics
Matches: 49, Mismatches: 19, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.24
Consensus pattern (21 bp):
ACATATATATCCCAAAGGACC
Found at i:11626815 original size:29 final size:29
Alignment explanation
Indices: 11626783--11626853 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
11626773 ATACAGCCAT
*
11626783 TCCC-AACTTTTTCAAAAATTACAAATTGG
1 TCCCTAACTTTTTC-AAAATTACAAAATGG
*
11626812 TCCCCTAAC-TTTTCAAAATTAGAAAATGG
1 T-CCCTAACTTTTTCAAAATTACAAAATGG
*
11626841 TCCCTAATTTTTT
1 TCCCTAACTTTTT
11626854 TTAAAGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 6 0.17
29 19 0.53
30 8 0.22
31 3 0.08
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (29 bp):
TCCCTAACTTTTTCAAAATTACAAAATGG
Found at i:11626915 original size:11 final size:11
Alignment explanation
Indices: 11626898--11626929 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
11626888 TAGACCTTAT
11626898 ATAATTTTTCC
1 ATAATTTTTCC
*
11626909 ATGATTTTTCC
1 ATAATTTTTCC
11626920 ATAATTTTTC
1 ATAATTTTTC
11626930 TCATCCTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.25, C:0.16, G:0.03, T:0.56
Consensus pattern (11 bp):
ATAATTTTTCC
Found at i:11632864 original size:72 final size:72
Alignment explanation
Indices: 11632788--11633081 Score: 342
Period size: 72 Copynumber: 4.1 Consensus size: 72
11632778 GGATGAAATC
* * * * * *
11632788 TTTCAAGAGAAAACATCTCAAGGGATATGAAATTTTGGTTTCAAGGGAAATTGTCTCGAGTGAGA
1 TTTCAAGAGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGA
11632853 CAAAAAA
66 CAAAAAA
* * * * *
11632860 TTTCAAGGGAAAATATCTCAAGCA-AGATAAAATTATTGTTTCAAGAGAAACTATCTTGAGTGAG
1 TTTCAAGAGAAAATATCTCAAG-AGAGATGAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAG
*
11632924 TCAAAAAA
65 ACAAAAAA
** * * *
11632932 AATCAAGAGAAAATATATCAAGAGAGATGAAATTTTTATTTCAAGGGAAACTGTCTCGAGTGAGA
1 TTTCAAGAGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGA
** *
11632997 TGGAAAAT
66 -CAAAAAA
* *
11633005 TTTCAAG-GAAAATATTTCAAGAGAGATGAAATTTTTGTTTCGAGAGAAACTGTCTCGAGTGAGA
1 TTTCAAGAGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGA
*
11633069 CAAAATA
66 CAAAAAA
11633076 -TTCAAG
1 TTTCAAG
11633082 GGAGATAAAA
Statistics
Matches: 183, Mismatches: 36, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
70 6 0.03
71 4 0.02
72 164 0.90
73 9 0.05
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (72 bp):
TTTCAAGAGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGA
CAAAAAA
Found at i:11632997 original size:38 final size:37
Alignment explanation
Indices: 11632955--11633068 Score: 101
Period size: 38 Copynumber: 3.1 Consensus size: 37
11632945 TATATCAAGA
11632955 GAGATGAAATTTTTATTTCAAGGGAAACTGTCTCGAGT
1 GAGATGAAATTTTT-TTTCAAGGGAAACTGTCTCGAGT
* * * * * *
11632993 GAGATGGAAA---ATTTTCAA-GGAAAATATTTCAAGA
1 GAGAT-GAAATTTTTTTTCAAGGGAAACTGTCTCGAGT
* *
11633027 GAGATGAAATTTTTGTTTCGAGAGAAACTGTCTCGAGT
1 GAGATGAAATTTTT-TTTCAAGGGAAACTGTCTCGAGT
11633065 GAGA
1 GAGA
11633069 CAAAATATTC
Statistics
Matches: 56, Mismatches: 14, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
33 4 0.07
34 16 0.29
35 6 0.11
36 2 0.04
37 5 0.09
38 19 0.34
39 4 0.07
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.31
Consensus pattern (37 bp):
GAGATGAAATTTTTTTTCAAGGGAAACTGTCTCGAGT
Found at i:11633025 original size:144 final size:144
Alignment explanation
Indices: 11632790--11633073 Score: 383
Period size: 144 Copynumber: 2.0 Consensus size: 144
11632780 ATGAAATCTT
* * * * *
11632790 TCAAGAGAAAACATCTCAAGGGATATGAAATTTTGGTTTCAAGGGAAATTGTCTCGAGTGAGACA
1 TCAAGAGAAAACATATCAAGAGAGATGAAATTTTGATTTCAAGGGAAACTGTCTCGAGTGAGACA
*
11632855 AAAAATTTCAAGGGAAAATATCTCAAGCA-AGATAAAATTATTGTTTCAAGAGAAACTATCTTGA
66 AAAAATTTCAAGGGAAAATATCTCAAG-AGAGATAAAATTATTGTTTCAAGAGAAACTATCTCGA
*
11632919 GTGAGTCAAAAAAAA
130 GTGAGACAAAAAAAA
* * *
11632934 TCAAGAGAAAATATATCAAGAGAGATGAAATTTTTATTTCAAGGGAAACTGTCTCGAGTGAGATG
1 TCAAGAGAAAACATATCAAGAGAGATGAAATTTTGATTTCAAGGGAAACTGTCTCGAGTGAGA-C
* * * * * * *
11632999 GAAAATTTTCAA-GGAAAATATTTCAAGAGAGATGAAATTTTTGTTTCGAGAGAAACTGTCTCGA
65 AAAAAATTTCAAGGGAAAATATCTCAAGAGAGATAAAATTATTGTTTCAAGAGAAACTATCTCGA
11633063 GTGAGACAAAA
130 GTGAGACAAAA
11633074 TATTCAAGGG
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
143 1 0.01
144 110 0.91
145 10 0.08
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (144 bp):
TCAAGAGAAAACATATCAAGAGAGATGAAATTTTGATTTCAAGGGAAACTGTCTCGAGTGAGACA
AAAAATTTCAAGGGAAAATATCTCAAGAGAGATAAAATTATTGTTTCAAGAGAAACTATCTCGAG
TGAGACAAAAAAAA
Found at i:11633093 original size:56 final size:57
Alignment explanation
Indices: 11633013--11633138 Score: 182
Period size: 56 Copynumber: 2.2 Consensus size: 57
11633003 ATTTTCAAGG
* * *
11633013 AAAATATTTCAAGAGAGATGAAATTTTTGTTTCGAGAGAAACTGTCTCGAGTGAGAC
1 AAAATATTTCAAGAGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGAA
* *
11633070 AAAATA-TTCAAGGGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTTGAGTGAGAAA
1 AAAATATTTCAAGAGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAG-AA
*
11633127 AAAAAATTTCAA
1 AAAATATTTCAA
11633139 AGGAAAATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
56 44 0.72
57 12 0.20
58 5 0.08
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (57 bp):
AAAATATTTCAAGAGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGAA
Found at i:11633173 original size:129 final size:129
Alignment explanation
Indices: 11632941--11633197 Score: 372
Period size: 129 Copynumber: 2.0 Consensus size: 129
11632931 AAATCAAGAG
* * *** *
11632941 AAAATATATCAAGAGAGATGAAATTTTTATTTCAAGGGAAACTGTCTCGAGTGAGATGGAAAATT
1 AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCGAGTGAGAAAAAAAAAT
* * * *
11633006 TTCAAGGAAAATATTTCAAGAGAGATGAAATTTTTGTTTCGAGAGAAACTGTCTCGAGTGAGAC
66 TTCAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTATCTCAAGTGAGAC
* * *
11633070 AAAATAT-TCAAGGGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTTGAGTGAGAAAAAAAAAT
1 AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCGAGTGAGAAAAAAAAAT
*
11633134 TTCAAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAGCTATCTCAAGTGAGA
66 TTC-AAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTATCTCAAGTGAGA
11633198 TGAAATTTGT
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
128 51 0.45
129 62 0.55
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (129 bp):
AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCGAGTGAGAAAAAAAAAT
TTCAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTATCTCAAGTGAGAC
Found at i:11637952 original size:21 final size:22
Alignment explanation
Indices: 11637928--11637969 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
11637918 TTTAAAAGAA
11637928 AACAAAGACAA-AAAAA-AATTG
1 AACAAAGA-AACAAAAATAATTG
11637949 AACAAAGAAACAAAAATAATT
1 AACAAAGAAACAAAAATAATT
11637970 ACCTAGACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 13 0.68
22 4 0.21
ACGTcount: A:0.71, C:0.10, G:0.07, T:0.12
Consensus pattern (22 bp):
AACAAAGAAACAAAAATAATTG
Found at i:11643067 original size:18 final size:18
Alignment explanation
Indices: 11643044--11643104 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
11643034 CACATATATC
11643044 ATCATTATCAACATCAAT
1 ATCATTATCAACATCAAT
** ***
11643062 ATCATTATCATGATTTCT
1 ATCATTATCAACATCAAT
*
11643080 ATCATTCTCAACATCAAT
1 ATCATTATCAACATCAAT
11643098 ATCATTA
1 ATCATTA
11643105 ATAATGCAAA
Statistics
Matches: 31, Mismatches: 12, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.39
Consensus pattern (18 bp):
ATCATTATCAACATCAAT
Found at i:11643412 original size:42 final size:42
Alignment explanation
Indices: 11643326--11643421 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 42
11643316 ACCACTTCTT
* * * *
11643326 AAGAATCACATATATATTCCAAAGGACCAAATATGTGTCTCG
1 AAGAACCACATATATATTCCAAAGGACCAAATATATATCCCG
* * ** *
11643368 AAGAACCGCATATATGTTCCAAAGGATTACATATATATCCCG
1 AAGAACCACATATATATTCCAAAGGACCAAATATATATCCCG
*
11643410 AAGGACCACATA
1 AAGAACCACATA
11643422 GAACTCTTTA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.24
Consensus pattern (42 bp):
AAGAACCACATATATATTCCAAAGGACCAAATATATATCCCG
Found at i:11643420 original size:21 final size:21
Alignment explanation
Indices: 11643332--11643421 Score: 63
Period size: 21 Copynumber: 4.3 Consensus size: 21
11643322 TCTTAAGAAT
*
11643332 CACATATATATTCCAAAGGAC
1 CACATATATATCCCAAAGGAC
* * * * * *
11643353 CAAATATGTGTCTCGAAGAAC
1 CACATATATATCCCAAAGGAC
* * * *
11643374 CGCATATATGTTCCAAAGGAT
1 CACATATATATCCCAAAGGAC
* *
11643395 TACATATATATCCCGAAGGAC
1 CACATATATATCCCAAAGGAC
11643416 CACATA
1 CACATA
11643422 GAACTCTTTA
Statistics
Matches: 47, Mismatches: 22, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.24
Consensus pattern (21 bp):
CACATATATATCCCAAAGGAC
Found at i:11644515 original size:29 final size:28
Alignment explanation
Indices: 11644469--11644523 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
11644459 ACTTTTTTAG
* * *
11644469 AAATTACAAATTGGTCCCCTAACTTTTCA
1 AAATTACAAAATGAT-CCCTAAATTTTCA
*
11644498 AAATTAGAAAATGATCCCTAAATTTT
1 AAATTACAAAATGATCCCTAAATTTT
11644524 TTTCAAGGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 10 0.45
29 12 0.55
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (28 bp):
AAATTACAAAATGATCCCTAAATTTTCA
Found at i:11651180 original size:38 final size:37
Alignment explanation
Indices: 11651138--11651249 Score: 106
Period size: 38 Copynumber: 3.1 Consensus size: 37
11651128 AGAAAATATA
11651138 TCAAGAGAGATGAAATTTTTATTTCAAGGGAAACTGTC
1 TCAAGAGAGATGAAATTTTT-TTTCAAGGGAAACTGTC
* * * *
11651176 TCAAGTGAGATGGAAA---ATTTTCAA-GGAAAATATC
1 TCAAGAGAGAT-GAAATTTTTTTTCAAGGGAAACTGTC
** *
11651210 TCAAGAGAGATGAAATTTTTGTTTTGAGTGAAACTGTC
1 TCAAGAGAGATGAAATTTTT-TTTCAAGGGAAACTGTC
11651248 TC
1 TC
11651250 GAGTGAGACA
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
33 4 0.07
34 18 0.32
35 6 0.11
36 2 0.04
37 4 0.07
38 19 0.33
39 4 0.07
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (37 bp):
TCAAGAGAGATGAAATTTTTTTTCAAGGGAAACTGTC
Found at i:11651212 original size:34 final size:34
Alignment explanation
Indices: 11651123--11651229 Score: 99
Period size: 38 Copynumber: 3.0 Consensus size: 34
11651113 GTCAAAAAAA
* * *
11651123 TCAAGAGAAAATATATCAAGAGAGATGAAATTTTTATT
1 TCAAGGGAAAATATCTCAAGAGAGATGAAA---AT-TT
* * *
11651161 TCAAGGGAAACTGTCTCAAGTGAGATGGAAAATTT
1 TCAAGGGAAAATATCTCAAGAGAGAT-GAAAATTT
*
11651196 TCAA-GGAAAATATCTCAAGAGAGATGAAATTTT
1 TCAAGGGAAAATATCTCAAGAGAGATGAAAATTT
11651229 T
1 T
11651230 GTTTTGAGTG
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
33 8 0.14
34 18 0.31
35 6 0.10
36 1 0.02
38 21 0.36
39 4 0.07
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (34 bp):
TCAAGGGAAAATATCTCAAGAGAGATGAAAATTT
Found at i:11651225 original size:72 final size:71
Alignment explanation
Indices: 11650949--11651271 Score: 277
Period size: 71 Copynumber: 4.6 Consensus size: 71
11650939 TAGAGTCATG
* * * * * * *
11650949 TCAAGA-AAA-TGTCTTGAGTGGGAT-AAAATCTTTCAAGAGAAAACATCTAAAGGGATATGAAA
1 TCAAGAGAAACTGTCTCGAGTGAGATCAAAA-ATTTCAAG-GAAAATATCTCAAGAGAGATGAAA
*
11651011 TTTTGGTT
64 TTTTTGTT
** * * *
11651019 TCAAG-GAATTTGTATCGAGTGAG-GCAAAAAATTTCAAGGGAAAATATCTCAAG-GAAGATAAA
1 TCAAGAGAAACTGTCTCGAGTGAGATC-AAAAATTTCAA-GGAAAATATCTCAAGAG-AGATGAA
*
11651081 ATTATTGTT
63 ATTTTTGTT
* ** *
11651090 TCAAGAGAAACTGTCTTGAGTGAG-TCAAAAAAATCAAGAGAAAATATATCAAGAGAGATGAAAT
1 TCAAGAGAAACTGTCTCGAGTGAGATCAAAAATTTCAAG-GAAAATATCTCAAGAGAGATGAAAT
*
11651154 TTTTATT
65 TTTTGTT
* * * *
11651161 TCAAGGGAAACTGTCTCAAGTGAGATGGAAAATTTTCAAGGAAAATATCTCAAGAGAGATGAAAT
1 TCAAGAGAAACTGTCTCGAGTGAGAT-CAAAAATTTCAAGGAAAATATCTCAAGAGAGATGAAAT
11651226 TTTTGTT
65 TTTTGTT
** *
11651233 TTGAGTGAAACTGTCTCGAGTGAGA-C-AAAATATTCAAGG
1 TCAAGAGAAACTGTCTCGAGTGAGATCAAAAAT-TTCAAGG
11651272 GAGGTAAAAT
Statistics
Matches: 203, Mismatches: 38, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
69 4 0.02
70 16 0.08
71 101 0.50
72 73 0.36
73 9 0.04
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (71 bp):
TCAAGAGAAACTGTCTCGAGTGAGATCAAAAATTTCAAGGAAAATATCTCAAGAGAGATGAAATT
TTTGTT
Found at i:11651282 original size:128 final size:130
Alignment explanation
Indices: 11651130--11651362 Score: 353
Period size: 128 Copynumber: 1.8 Consensus size: 130
11651120 AAATCAAGAG
* * ** **
11651130 AAAATATATCAAGAGAGATGAAATTTTTATTTCAAGGGAAACTGTCTCAAGTGAGATGGAAAATT
1 AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCAAGTGAGACAGAAAAAA
11651195 TTC-AAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTTGAGTGAAACTGTCTCGAGTGAGAC
66 TTCAAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTTGAGTGAAACTGTCTCGAGTGAGAC
* * * **
11651259 AAAATAT-TCAAGGGAGGTAAAATTTTTGTTTCAAGAGAAACTGTCTTGAGTGAGACAGAAAAAA
1 AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCAAGTGAGACAGAAAAAA
11651323 TTCAAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTT
66 TTCAAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTT
11651363 CAAGAGAAGC
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
128 49 0.53
129 43 0.47
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (130 bp):
AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCAAGTGAGACAGAAAAAA
TTCAAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTTGAGTGAAACTGTCTCGAGTGAGAC
Found at i:11651284 original size:56 final size:57
Alignment explanation
Indices: 11651202--11651315 Score: 158
Period size: 56 Copynumber: 2.0 Consensus size: 57
11651192 ATTTTCAAGG
* ** *
11651202 AAAATATCTCAAGAGAGATGAAATTTTTGTTTTGAGTGAAACTGTCTCGAGTGAGAC
1 AAAATATCTCAAGAGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGAC
* * *
11651259 AAAATAT-TCAAGGGAGGTAAAATTTTTGTTTCAAGAGAAACTGTCTTGAGTGAGAC
1 AAAATATCTCAAGAGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGAC
11651315 A
1 A
11651316 GAAAAAATTC
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
56 43 0.86
57 7 0.14
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.31
Consensus pattern (57 bp):
AAAATATCTCAAGAGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTCGAGTGAGAC
Found at i:11651384 original size:129 final size:129
Alignment explanation
Indices: 11651130--11651386 Score: 345
Period size: 129 Copynumber: 2.0 Consensus size: 129
11651120 AAATCAAGAG
* * ** **
11651130 AAAATATATCAAGAGAGATGAAATTTTTATTTCAAGGGAAACTGTCTCAAGTGAGATGGAAAATT
1 AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCAAGTGAGACAGAAAAAA
** * * *
11651195 TTCAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTTGAGTGAAACTGTCTCGAGTGAGAC
66 TTCAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTATCTCAAGTGAGAC
* * * **
11651259 AAAATAT-TCAAGGGAGGTAAAATTTTTGTTTCAAGAGAAACTGTCTTGAGTGAGACAGAAAAAA
1 AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCAAGTGAGACAGAAAAAA
*
11651323 TTCAAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAGCTATCTCAAGTGAGA
66 TTC-AAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTATCTCAAGTGAGA
11651387 TGAAATTTGT
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
128 49 0.45
129 61 0.55
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.29
Consensus pattern (129 bp):
AAAATATATCAAGAGAGATAAAATTTTTATTTCAAGAGAAACTGTCTCAAGTGAGACAGAAAAAA
TTCAAGGAAAATATCTCAAGAGAGATGAAATTTTTGTTTCAAGAGAAACTATCTCAAGTGAGAC
Found at i:11654421 original size:26 final size:26
Alignment explanation
Indices: 11654391--11654448 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
11654381 TAATCTCGCC
* *
11654391 ATCTTTTAACTTGATCTACTCGCGCA
1 ATCTTCTAACTTGATCTACTCGCACA
11654417 ATCTTCTAACTTGATCTACTCGCACA
1 ATCTTCTAACTTGATCTACTCGCACA
11654443 ATCTTC
1 ATCTTC
11654449 ATTATGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.24, C:0.29, G:0.09, T:0.38
Consensus pattern (26 bp):
ATCTTCTAACTTGATCTACTCGCACA
Found at i:11681731 original size:20 final size:21
Alignment explanation
Indices: 11681684--11681731 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
11681674 AAGGGACTAT
*
11681684 CGATACCATAGTATAGAAGTAT
1 CGATACCATAGTATAG-AGTAC
11681706 CGATACCAT-GCTATAG-GTAC
1 CGATACCATAG-TATAGAGTAC
11681726 CGATAC
1 CGATAC
11681732 TATTGAGCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 9 0.38
21 1 0.04
22 14 0.58
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (21 bp):
CGATACCATAGTATAGAGTAC
Found at i:11682137 original size:52 final size:52
Alignment explanation
Indices: 11682059--11682290 Score: 279
Period size: 52 Copynumber: 4.4 Consensus size: 52
11682049 GTACTATCGA
*
11682059 CACTAAGTGTGCAA-CCATCAGAATTCATAATGTTTATGAACGACCATATCAG
1 CACTAAGTGTGCAACCCA-CAGAATTCATAATGTTTATGAACGACCGTATCAG
* *
11682111 CACTAAGTGTGCAACCCACAGAATTCATAATATGTT-TGAACGACCGTATCGG
1 CACTAAGTGTGCAACCCACAGAATTCATAATGT-TTATGAACGACCGTATCAG
* *
11682163 CACTAAGTGTGCAACCCACGGAATTCATAATAAGTTTATGAACGACTGTATCAG
1 CACTAAGTGTGCAACCCACAGAATTCATAAT--GTTTATGAACGACCGTATCAG
* * * * **
11682217 CACTGAGTGTACAACCCACTGAATTCATAATATGTTTATGAACGATCGTATTGG
1 CACTAAGTGTGCAACCCACAGAATTCAT-A-ATGTTTATGAACGACCGTATCAG
* *
11682271 CGCTAAGTGTGCACCCCACA
1 CACTAAGTGTGCAACCCACA
11682291 TAACTTATAA
Statistics
Matches: 154, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
52 72 0.47
53 7 0.05
54 72 0.47
55 1 0.01
56 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (52 bp):
CACTAAGTGTGCAACCCACAGAATTCATAATGTTTATGAACGACCGTATCAG
Found at i:11682241 original size:106 final size:106
Alignment explanation
Indices: 11682053--11682290 Score: 329
Period size: 106 Copynumber: 2.2 Consensus size: 106
11682043 CTACGTGTAC
*
11682053 TATCGACACTAAGTGTGCAA-CCATCAGAATTCATAATGTTTATGAACGACCATATCAGCACTAA
1 TATCGGCACTAAGTGTGCAACCCA-CAGAATTCATAATGTTTATGAACGACCATATCAGCACTAA
*
11682117 GTGTGCAACCCACAGAATTCATAATATG-TT-TGAACGACCG
65 GTGTACAACCCACAGAATTCATAATATGTTTATGAACGACCG
* ** *
11682157 TATCGGCACTAAGTGTGCAACCCACGGAATTCATAATAAGTTTATGAACGACTGTATCAGCACTG
1 TATCGGCACTAAGTGTGCAACCCACAGAATTCATAAT--GTTTATGAACGACCATATCAGCACTA
* *
11682222 AGTGTACAACCCACTGAATTCATAATATGTTTATGAACGATCG
64 AGTGTACAACCCACAGAATTCATAATATGTTTATGAACGACCG
* * *
11682265 TATTGGCGCTAAGTGTGCACCCCACA
1 TATCGGCACTAAGTGTGCAACCCACA
11682291 TAACTTATAA
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
104 31 0.26
105 3 0.03
106 50 0.43
107 2 0.02
108 31 0.26
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (106 bp):
TATCGGCACTAAGTGTGCAACCCACAGAATTCATAATGTTTATGAACGACCATATCAGCACTAAG
TGTACAACCCACAGAATTCATAATATGTTTATGAACGACCG
Found at i:11682301 original size:54 final size:54
Alignment explanation
Indices: 11682059--11682290 Score: 303
Period size: 54 Copynumber: 4.4 Consensus size: 54
11682049 GTACTATCGA
*
11682059 CACTAAGTGTGCAA-CCATCAGAATTCAT-A-ATGTTTATGAACGACCATATCAG
1 CACTAAGTGTGCAACCCA-CAGAATTCATAATATGTTTATGAACGACCGTATCAG
*
11682111 CACTAAGTGTGCAACCCACAGAATTCATAATATG-TT-TGAACGACCGTATCGG
1 CACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAG
* * *
11682163 CACTAAGTGTGCAACCCACGGAATTCATAATAAGTTTATGAACGACTGTATCAG
1 CACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAG
* * * * **
11682217 CACTGAGTGTACAACCCACTGAATTCATAATATGTTTATGAACGATCGTATTGG
1 CACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAG
* *
11682271 CGCTAAGTGTGCACCCCACA
1 CACTAAGTGTGCAACCCACA
11682291 TAACTTATAA
Statistics
Matches: 156, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
52 70 0.45
53 8 0.05
54 78 0.50
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (54 bp):
CACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAG
Found at i:11689606 original size:15 final size:15
Alignment explanation
Indices: 11689586--11689617 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
11689576 TGCATTTTAA
11689586 TTGTGTAACTATATG
1 TTGTGTAACTATATG
11689601 TTGTGTAACTATATG
1 TTGTGTAACTATATG
11689616 TT
1 TT
11689618 ATACTAGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (15 bp):
TTGTGTAACTATATG
Found at i:11689868 original size:54 final size:54
Alignment explanation
Indices: 11689669--11689951 Score: 326
Period size: 54 Copynumber: 5.3 Consensus size: 54
11689659 TTACCAAATA
* * *
11689669 GGCACTAATTGAGCAATTCACGAAATTCATCATATGTTGA-GAATAACTGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
11689722 GGCACTAAGTGTGCAATTCACGGAATTCATCATAGGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
11689776 GGCACTAA--GTGCAAAGT-AC-AGAATGCATCATATGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGC-AATTCACGA-AATTCATCATATGTTGATGAATAACCGTTTC
* * * *
11689828 AGTACTAAGTGTGCAATTCACGAAATTCATCATATATTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * *
11689882 GGCACTAAGTGTGCAAAGT-ACGAAATTTATCATATATTGATGAATAACCATCTC
1 GGCACTAAGTGTGC-AATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
11689936 AGCACTATGTGTGCAA
1 GGCACTAAGTGTGCAA
11689952 CCCACATAAT
Statistics
Matches: 196, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
52 40 0.20
53 44 0.22
54 108 0.55
55 4 0.02
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:11689963 original size:108 final size:105
Alignment explanation
Indices: 11689688--11689951 Score: 352
Period size: 106 Copynumber: 2.5 Consensus size: 105
11689678 TGAGCAATTC
** * *
11689688 ACGAAATTCATCATATGTTGA-GAATAACTGTTTCGGCACTAAGTGTGCAATTCACGGAATTCAT
1 ACGAAATTCATCATATGTTGATGAATAACCATTTCAGCACTAAGTGTGCAATTCAC-AAATTCAT
*
11689752 CATAGGTTGATGAATAACCGTTTCGGCACTAAGTGCAAAGT
65 CATAGATTGATGAATAACCGTTTCGGCACTAAGTGCAAAGT
* *
11689793 AC-AGAATGCATCATATGTTGATGAATAACCATTTCAGTACTAAGTGTGCAATTCACGAAATTCA
1 ACGA-AATTCATCATATGTTGATGAATAACCATTTCAGCACTAAGTGTGCAATTCAC-AAATTCA
* *
11689857 TCATATATTGATGAATAACCGTTTTGGCACTAAGTGTGCAAAGT
64 TCATAGATTGATGAATAACCGTTTCGGCACTAA--GTGCAAAGT
* * * *
11689901 ACGAAATTTATCATATATTGATGAATAACCATCTCAGCACTATGTGTGCAA
1 ACGAAATTCATCATATGTTGATGAATAACCATTTCAGCACTAAGTGTGCAA
11689952 CCCACATAAT
Statistics
Matches: 139, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
104 1 0.01
105 18 0.13
106 67 0.48
108 52 0.37
109 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (105 bp):
ACGAAATTCATCATATGTTGATGAATAACCATTTCAGCACTAAGTGTGCAATTCACAAATTCATC
ATAGATTGATGAATAACCGTTTCGGCACTAAGTGCAAAGT
Found at i:11689979 original size:108 final size:106
Alignment explanation
Indices: 11689696--11689996 Score: 295
Period size: 108 Copynumber: 2.8 Consensus size: 106
11689686 TCACGAAATT
* ** * * ** * * **
11689696 CATCATATGTTGA-GAATAACTGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATCATAGGTT
1 CATCATATATTGATGAATAACCATCTCAGCACTAAGTGTGCAACCCACGAAATTCATAATATATT
*
11689760 GATGAATAACCGTTTCGGCACTAAGTGCAAAGTACAGAATG
66 GATGAATAACCGTTTAGGCACTAAGTGCAAAGTACAGAATG
* * * ** *
11689801 CATCATATGTTGATGAATAACCATTTCAGTACTAAGTGTGCAATTCACGAAATTCATCATATATT
1 CATCATATATTGATGAATAACCATCTCAGCACTAAGTGTGCAACCCACGAAATTCATAATATATT
* *
11689866 GATGAATAACCGTTTTGGCACTAAGTGTGCAAAGTAC-GAAATT
66 GATGAATAACCGTTTAGGCACTAA--GTGCAAAGTACAG-AATG
* * *
11689909 TATCATATATTGATGAATAACCATCTCAGCACTATGTGTGCAACCCAC-ATAATTCTTAATGA-A
1 CATCATATATTGATGAATAACCATCTCAGCACTAAGTGTGCAACCCACGA-AATTCATAAT-ATA
* * *
11689972 TTTATGAATGACCGTATAGGCACTA
64 TTGATGAATAACCGTTTAGGCACTA
11689997 CTTGTGCATC
Statistics
Matches: 168, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
105 13 0.08
106 67 0.40
107 2 0.01
108 85 0.51
109 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (106 bp):
CATCATATATTGATGAATAACCATCTCAGCACTAAGTGTGCAACCCACGAAATTCATAATATATT
GATGAATAACCGTTTAGGCACTAAGTGCAAAGTACAGAATG
Found at i:11691145 original size:17 final size:17
Alignment explanation
Indices: 11691123--11691166 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
11691113 GAGTTATAAT
11691123 TCAATTCCTCCTCAAAA
1 TCAATTCCTCCTCAAAA
*
11691140 TCAATTCCCCCTCAAAA
1 TCAATTCCTCCTCAAAA
11691157 TCAATTCCTC
1 TCAATTCCTC
11691167 GATCAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.30
Consensus pattern (17 bp):
TCAATTCCTCCTCAAAA
Found at i:11692733 original size:229 final size:229
Alignment explanation
Indices: 11692280--11692731 Score: 743
Period size: 229 Copynumber: 2.0 Consensus size: 229
11692270 AATTACCTTA
* *
11692280 TAATTGTCACATGTTATTACCACAAATGTTGCTTGAAAAGCGGTCAAATATCAACTTTCTTTTGA
1 TAATTGTCACATGTTATTACCACAAATGTCGCTTGAAAAGCGGCCAAATATCAACTTTCTTTTGA
11692345 GCCAATTAACAAACACATGAATCACAAAAACCACATAATCATCTTGATATTTTAAATAAATCAAT
66 GCCAATTAACAAACACATGAATCACAAAAACCACATAATCATCTTGATATTTTAAATAAATCAAT
*
11692410 CTACACAAATAAGGTCACTTTGTTGACATTATTTCAACTAATCTATCAAAATATCAAATATAGCC
131 CTACACAAATAAGATCACTTTGTTGACATTATTTCAACTAATCTATCAAAATATCAAATATA-CC
11692475 ATAATATGAATTAATTTGTTTCAATATATAATTAT
195 ATAATATGAATTAATTTGTTTCAATATATAATTAT
* ** *
11692510 TAATTGTCACATGTTATTACCGCAAATGTCGCTTGAAAATTGGCCAAATAT-TACTTTCTTTTGA
1 TAATTGTCACATGTTATTACCACAAATGTCGCTTGAAAAGCGGCCAAATATCAACTTTCTTTTGA
* *
11692574 GTCAATTAACAAACGCATGAATCACAAAAACCACATAATCATCTTGATATTTTAAATAAATCAAT
66 GCCAATTAACAAACACATGAATCACAAAAACCACATAATCATCTTGATATTTTAAATAAATCAAT
*
11692639 CTACAC-AATATGATCACTTTGTTGACATTATGTTTCAACTAAT-TGATCAAAATATCAAATAT-
131 CTACACAAATAAGATCACTTTGTTGACATTA--TTTCAACTAATCT-ATCAAAATATCAAATATA
11692701 CCATAATATGAATTAA-TTGTTTCAATATATA
193 CCATAATATGAATTAATTTGTTTCAATATATA
11692732 TATATATATA
Statistics
Matches: 209, Mismatches: 10, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
227 15 0.07
228 38 0.18
229 82 0.39
230 74 0.35
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (229 bp):
TAATTGTCACATGTTATTACCACAAATGTCGCTTGAAAAGCGGCCAAATATCAACTTTCTTTTGA
GCCAATTAACAAACACATGAATCACAAAAACCACATAATCATCTTGATATTTTAAATAAATCAAT
CTACACAAATAAGATCACTTTGTTGACATTATTTCAACTAATCTATCAAAATATCAAATATACCA
TAATATGAATTAATTTGTTTCAATATATAATTAT
Found at i:11694956 original size:3 final size:3
Alignment explanation
Indices: 11694937--11695011 Score: 95
Period size: 3 Copynumber: 25.7 Consensus size: 3
11694927 CTCCATTTTC
*
11694937 TAT TAC TAT TAT T-T TAT TAT TAT T-T TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11694982 TAT T-T TATT TAT TAT TAT TAAT TAT TAT TA
1 TAT TAT TA-T TAT TAT TAT T-AT TAT TAT TA
11695012 CAAACAGGCC
Statistics
Matches: 64, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
2 8 0.12
3 50 0.78
4 6 0.09
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:11696592 original size:20 final size:20
Alignment explanation
Indices: 11696540--11696597 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
11696530 AAATAAATAA
* *
11696540 ATATCTTATTTTATAAATTAT
1 ATAT-TTATTTTTTTAATTAT
*
11696561 ATATTAATTTTTTTAATTAT
1 ATATTTATTTTTTTAATTAT
*
11696581 TTATTTATTTTTTTAAT
1 ATATTTATTTTTTTAAT
11696598 ATCAAAGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 28 0.88
21 4 0.12
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (20 bp):
ATATTTATTTTTTTAATTAT
Found at i:11700502 original size:15 final size:15
Alignment explanation
Indices: 11700482--11700513 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
11700472 GATCAATACC
11700482 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
11700497 TTTTGCATACATTCA
1 TTTTGCATACATGCA
11700512 TT
1 TT
11700514 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:11707712 original size:10 final size:10
Alignment explanation
Indices: 11707697--11707744 Score: 69
Period size: 10 Copynumber: 4.6 Consensus size: 10
11707687 ATGCTTGAAG
*
11707697 AAAAAATGAA
1 AAAAAAAGAA
11707707 AAAAAAAGAAGA
1 AAAAAAAG-A-A
11707719 AAAAAAAGAA
1 AAAAAAAGAA
11707729 AAAAAAAGAA
1 AAAAAAAGAA
11707739 AAAAAA
1 AAAAAA
11707745 GAGGGGGGTC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
10 24 0.69
11 2 0.06
12 9 0.26
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:11707729 original size:22 final size:22
Alignment explanation
Indices: 11707693--11707744 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
11707683 TATTATGCTT
*
11707693 GAAG-AAAAAATGAAAAAAAAA
1 GAAGAAAAAAAAGAAAAAAAAA
11707714 GAAGAAAAAAAAGAAAAAAAAA
1 GAAGAAAAAAAAGAAAAAAAAA
11707736 GAA-AAAAAA
1 GAAGAAAAAA
11707745 GAGGGGGGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (22 bp):
GAAGAAAAAAAAGAAAAAAAAA
Found at i:11708111 original size:19 final size:19
Alignment explanation
Indices: 11708078--11708132 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
11708068 TATTTATTAA
11708078 TAAATTCTAAGTTTATTTCTC-
1 TAAATTC-AA-TTTATTT-TCG
11708099 TAAATTCAATTTATTTTCG
1 TAAATTCAATTTATTTTCG
* *
11708118 AAAATTCAACTTATT
1 TAAATTCAATTTATT
11708133 CTTTATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 2 0.06
19 20 0.65
20 2 0.06
21 7 0.23
ACGTcount: A:0.35, C:0.13, G:0.04, T:0.49
Consensus pattern (19 bp):
TAAATTCAATTTATTTTCG
Found at i:11709603 original size:173 final size:173
Alignment explanation
Indices: 11709272--11709603 Score: 438
Period size: 173 Copynumber: 1.9 Consensus size: 173
11709262 TTCCAGAGAA
*
11709272 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAGCATGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAACATGTTC
* * *
11709337 AACCTTTTGCTCAAATCCATCACTTGATGGATCATCTTTTCCAGAGAAGTTCATAATGAGAAGAA
66 AACCTTTTGCTCAAATCCATCACTTGATGGATCAACGTTGCCAGAGAAGTTCATAATGAGAAGAA
* **** **
11709402 CTTGTTCAACTTTTTGCTTGAATTCATAAACATTTCCAGGTCG
131 CTTATTCAACTGGAAGCAAGAATTCATAAACATTTCCAGGTCG
* * *
11709445 AGTTCATAATGAGAATAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAACATGTTC
* * *
11709510 AACCTTTTGCTCGAATTCATCA-TTCGATGGATCAACGTTGCCAGA-AGGTTCATAATGAGAAGA
66 AACCTTTTGCTCAAATCCATCACTT-GATGGATCAACGTTGCCAGAGAAGTTCATAATGAGAAGA
*
11709573 ACTTATCTGAAGC-GGAAG-AAGAAGTTCATAA
130 ACTTAT-TCAA-CTGGAAGCAAGAA-TTCATAA
11709604 TGAGAAGAGC
Statistics
Matches: 137, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
172 27 0.20
173 109 0.80
174 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.28
Consensus pattern (173 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAACATGTTC
AACCTTTTGCTCAAATCCATCACTTGATGGATCAACGTTGCCAGAGAAGTTCATAATGAGAAGAA
CTTATTCAACTGGAAGCAAGAATTCATAAACATTTCCAGGTCG
Found at i:11710085 original size:3 final size:3
Alignment explanation
Indices: 11710079--11710140 Score: 74
Period size: 3 Copynumber: 20.7 Consensus size: 3
11710069 TTCATTTGAA
* *
11710079 TAT TAT T-T ATAT TAT TAT TAT TAT AAT TAT AAT TAT TAT TAT TA-
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11710123 TAT ATAT TAT TAT TAT TA
1 TAT -TAT TAT TAT TAT TA
11710141 AAAAATAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
2 3 0.06
3 44 0.86
4 4 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:11710670 original size:18 final size:18
Alignment explanation
Indices: 11710647--11710686 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
11710637 GCTGCGAGGG
11710647 GTATATCTGTAATTTCGC
1 GTATATCTGTAATTTCGC
11710665 GTATATCTGTAATTTCGC
1 GTATATCTGTAATTTCGC
11710683 GTAT
1 GTAT
11710687 GACCAAACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.45
Consensus pattern (18 bp):
GTATATCTGTAATTTCGC
Found at i:11711079 original size:16 final size:17
Alignment explanation
Indices: 11711053--11711092 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
11711043 TTATTTGCAA
*
11711053 TATTATTTTATTATTAT
1 TATTATTTTATAATTAT
11711070 TATT-TTTTATAATTAT
1 TATTATTTTATAATTAT
*
11711086 TTTTATT
1 TATTATT
11711093 AATTATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TATTATTTTATAATTAT
Found at i:11711084 original size:13 final size:13
Alignment explanation
Indices: 11711054--11711098 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
11711044 TATTTGCAAT
*
11711054 ATTATTTTATTATT
1 ATTATTTT-TTATA
11711068 ATTATTTTTTATA
1 ATTATTTTTTATA
11711081 ATTA-TTTTTATTA
1 ATTATTTTTTA-TA
11711094 ATTAT
1 ATTAT
11711099 ATAAATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 6 0.21
13 14 0.50
14 8 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTATTTTTTATA
Found at i:11719619 original size:24 final size:24
Alignment explanation
Indices: 11719592--11719637 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
11719582 CCAGACCTGA
* *
11719592 ATTCTGCTCTGATTTCTGATCTAG
1 ATTCTGCTATGATATCTGATCTAG
*
11719616 ATTCTGTTATGATATCTGATCT
1 ATTCTGCTATGATATCTGATCT
11719638 GAATTATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (24 bp):
ATTCTGCTATGATATCTGATCTAG
Found at i:11719659 original size:24 final size:24
Alignment explanation
Indices: 11719601--11719659 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
11719591 AATTCTGCTC
*
11719601 TGATTTCTGATCTAGATTCTGTTA
1 TGATTTCTGATCTAGATTATGTTA
* *
11719625 TGATATCTGATCT-GAATTATGTTT
1 TGATTTCTGATCTAG-ATTATGTTA
*
11719649 TGATTTATGAT
1 TGATTTCTGAT
11719660 ATCTCCATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.24, C:0.08, G:0.17, T:0.51
Consensus pattern (24 bp):
TGATTTCTGATCTAGATTATGTTA
Found at i:11740151 original size:22 final size:22
Alignment explanation
Indices: 11740126--11740204 Score: 104
Period size: 22 Copynumber: 3.6 Consensus size: 22
11740116 CGGTTAATGG
*
11740126 AAGTGCCTTAGCACTGATCCTA
1 AAGTGCCTTAGCACTGATACTA
* **
11740148 AAGTGCCTCAGCACTGATACGG
1 AAGTGCCTTAGCACTGATACTA
*
11740170 AAGTGCATTAGCACTGATACTA
1 AAGTGCCTTAGCACTGATACTA
*
11740192 AAGTACCTTAGCA
1 AAGTGCCTTAGCA
11740205 TTGTTGGGGA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (22 bp):
AAGTGCCTTAGCACTGATACTA
Found at i:11746763 original size:23 final size:23
Alignment explanation
Indices: 11746732--11746790 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
11746722 TAAATTAATG
* *
11746732 CACCAAAGTGCCACGTAGAATTA
1 CACCGAAGTGCCACGTAGAAATA
* *
11746755 CACCGAAGTGCCGCGTAGAAATG
1 CACCGAAGTGCCACGTAGAAATA
11746778 CACCGAAGTGCCA
1 CACCGAAGTGCCA
11746791 TATAAGATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.34, C:0.29, G:0.24, T:0.14
Consensus pattern (23 bp):
CACCGAAGTGCCACGTAGAAATA
Found at i:11755360 original size:23 final size:23
Alignment explanation
Indices: 11755334--11755423 Score: 101
Period size: 23 Copynumber: 3.9 Consensus size: 23
11755324 TACCACAGCT
* * * *
11755334 CGTATAAATGCACCTAAGTGCCA
1 CGTAGAAATACACCGAAGTGCCG
* *
11755357 CGTAGAATTGA-ACCGAAGTACCG
1 CGTAGAAAT-ACACCGAAGTGCCG
11755380 CGTAGAAATACACCGAAGTGCCG
1 CGTAGAAATACACCGAAGTGCCG
*
11755403 CGTAGAAATACACCAAAGTGC
1 CGTAGAAATACACCGAAGTGC
11755424 ATATAAGATG
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
22 1 0.02
23 55 0.98
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (23 bp):
CGTAGAAATACACCGAAGTGCCG
Found at i:11757193 original size:21 final size:21
Alignment explanation
Indices: 11757167--11757207 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
11757157 TTCAATTAAG
* *
11757167 AATCAATGAGCTTTACTTCAT
1 AATCAAGGAGCCTTACTTCAT
*
11757188 AATCAAGGCGCCTTACTTCA
1 AATCAAGGAGCCTTACTTCA
11757208 AAGCCATAGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (21 bp):
AATCAAGGAGCCTTACTTCAT
Found at i:11760832 original size:20 final size:20
Alignment explanation
Indices: 11760784--11760838 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 20
11760774 CTGGTAATGT
11760784 AGGTGTATCGGTACACTGTCA
1 AGGTGTATCGGTACAC-GTCA
11760805 AGGTGTATCGGTACAC-TCA
1 AGGTGTATCGGTACACGTCA
11760824 AGAGTGTATCGGTAC
1 AG-GTGTATCGGTAC
11760839 CCAAATTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 5 0.15
20 12 0.36
21 16 0.48
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (20 bp):
AGGTGTATCGGTACACGTCA
Found at i:11761157 original size:19 final size:19
Alignment explanation
Indices: 11761119--11761158 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
11761109 CGAATAATTT
* * *
11761119 AATCGAATATATAATTTTA
1 AATCGAATAGAAAATATTA
11761138 AATCGAATAGAAAATATTA
1 AATCGAATAGAAAATATTA
11761157 AA
1 AA
11761159 ATTCATTTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (19 bp):
AATCGAATAGAAAATATTA
Found at i:11761277 original size:13 final size:13
Alignment explanation
Indices: 11761259--11761292 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
11761249 TAAGATTTTC
11761259 TTTGAAAATCATT
1 TTTGAAAATCATT
11761272 TTTG-AAATCATT
1 TTTGAAAATCATT
11761284 TTTGAAAAT
1 TTTGAAAAT
11761293 TACTCCCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (13 bp):
TTTGAAAATCATT
Found at i:11763116 original size:20 final size:19
Alignment explanation
Indices: 11763079--11763120 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
11763069 AGTTTTCTTG
11763079 AAAACAACATAATTAAATCA
1 AAAACAACATAATTAAAT-A
*
11763099 AAAACAACA-ATTTAAAATA
1 AAAACAACATAATT-AAATA
11763118 AAA
1 AAA
11763121 TCATTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (19 bp):
AAAACAACATAATTAAATA
Found at i:11763570 original size:23 final size:23
Alignment explanation
Indices: 11763539--11763582 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
11763529 GTACACTCCT
*
11763539 GAATGTATCGATACACATTCAAG
1 GAATATATCGATACACATTCAAG
11763562 GAATATATCGATACACATTCA
1 GAATATATCGATACACATTCA
11763583 TAGTGTATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (23 bp):
GAATATATCGATACACATTCAAG
Found at i:11763647 original size:20 final size:20
Alignment explanation
Indices: 11763622--11763661 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
11763612 CGATACCTAG
11763622 GTATCGATACACTGTTGCAC
1 GTATCGATACACTGTTGCAC
*
11763642 GTATCGATATACTGTTGCAC
1 GTATCGATACACTGTTGCAC
11763662 AAAAATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (20 bp):
GTATCGATACACTGTTGCAC
Found at i:11766299 original size:22 final size:22
Alignment explanation
Indices: 11766274--11766324 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
11766264 TTAGTACTTA
11766274 AGAATAGAACCCAAGTATATCT
1 AGAATAGAACCCAAGTATATCT
11766296 AGAATAGAACCCAAGTATATCT
1 AGAATAGAACCCAAGTATATCT
11766318 AGAATAG
1 AGAATAG
11766325 TCATCTACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.22
Consensus pattern (22 bp):
AGAATAGAACCCAAGTATATCT
Found at i:11769446 original size:20 final size:20
Alignment explanation
Indices: 11769421--11769470 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
11769411 TCTATGTTGG
*
11769421 GAGTGTATTGATATATCTAA
1 GAGTGTATCGATATATCTAA
11769441 GAGTGTATCGATATATCTAA
1 GAGTGTATCGATATATCTAA
11769461 GAGTGTATCG
1 GAGTGTATCG
11769471 GTACCTCCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (20 bp):
GAGTGTATCGATATATCTAA
Found at i:11771143 original size:19 final size:19
Alignment explanation
Indices: 11771117--11771157 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
11771107 TTCTTTTTGA
11771117 TTTATTCCTTTATTTTA-T
1 TTTATTCCTTTATTTTACT
*
11771135 TTTATTTCCTTTTTTTTACT
1 TTTA-TTCCTTTATTTTACT
11771155 TTT
1 TTT
11771158 CTCTCTCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
19 12 0.60
20 4 0.20
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTATTCCTTTATTTTACT
Found at i:11771263 original size:22 final size:22
Alignment explanation
Indices: 11771235--11771286 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
11771225 ATTTACCCCA
* *
11771235 TCCACTCATTTTTTTTCAATCG
1 TCCACTCATTTCTTTTCAACCG
11771257 TCCACTCATTTCTTTTCAACCG
1 TCCACTCATTTCTTTTCAACCG
11771279 TCCACTCA
1 TCCACTCA
11771287 CTCCACCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.19, C:0.35, G:0.04, T:0.42
Consensus pattern (22 bp):
TCCACTCATTTCTTTTCAACCG
Found at i:11773442 original size:2 final size:2
Alignment explanation
Indices: 11773435--11773479 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
11773425 CCGTAGCAGC
11773435 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11773477 AT A
1 AT A
11773480 AAGGGAGTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11775754 original size:20 final size:18
Alignment explanation
Indices: 11775714--11775773 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
11775704 TATACATTAC
11775714 ATATAT-AAATTTTGAAA
1 ATATATAAAATTTTGAAA
*
11775731 ATATATAAAATTTT-ATGA
1 ATATATAAAATTTTGA-AA
*
11775749 ATATATATAGA-TTTGAAA
1 ATATATA-AAATTTTGAAA
11775767 ATATATA
1 ATATATA
11775774 GCTTTTAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 7 0.19
18 26 0.72
19 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.42
Consensus pattern (18 bp):
ATATATAAAATTTTGAAA
Found at i:11775765 original size:16 final size:16
Alignment explanation
Indices: 11775746--11775789 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
11775736 TAAAATTTTA
11775746 TGAATATATATAGATT
1 TGAATATATATAGATT
* *
11775762 TGAAAATATATAGCTT
1 TGAATATATATAGATT
*
11775778 TTAATATATATA
1 TGAATATATATA
11775790 TATACTATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.43
Consensus pattern (16 bp):
TGAATATATATAGATT
Found at i:11775807 original size:43 final size:45
Alignment explanation
Indices: 11775752--11775847 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 45
11775742 TTTATGAATA
* *
11775752 TATATAGATTTGAAAAT-ATATAGCTTTT-AATATATA-TATATAC
1 TATATATATTTGAAAATAATATAG-TTTTGAAAATATATTATATAC
*
11775795 TATATATATTTGAAAATAAATATAGTTTTGAAAATATATTATATAT
1 TATATATATTTGAAAAT-AATATAGTTTTGAAAATATATTATATAC
11775841 TATATAT
1 TATATAT
11775848 GTATATTAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
43 16 0.35
44 4 0.09
45 13 0.28
46 13 0.28
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (45 bp):
TATATATATTTGAAAATAATATAGTTTTGAAAATATATTATATAC
Found at i:11775833 original size:16 final size:16
Alignment explanation
Indices: 11775723--11775833 Score: 54
Period size: 16 Copynumber: 6.9 Consensus size: 16
11775713 CATATATAAA
*
11775723 TTTTGAAAATATATAAAAT
1 TTTTGAAAATATAT---AG
*
11775742 TTTATGAATATATATAG
1 TTT-TGAAAATATATAG
*
11775759 ATTTGAAAATATATAG
1 TTTTGAAAATATATAG
*
11775775 CTTTT-AATATATATA-
1 -TTTTGAAAATATATAG
* **
11775790 -TAT-ACTATATATA-
1 TTTTGAAAATATATAG
11775803 -TTTGAAAATAAATATAG
1 TTTTGAAAAT--ATATAG
11775820 TTTTGAAAATATAT
1 TTTTGAAAATATAT
11775834 TATATATTAT
Statistics
Matches: 74, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
13 13 0.18
14 3 0.04
16 30 0.41
17 6 0.08
18 9 0.12
19 3 0.04
20 10 0.14
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (16 bp):
TTTTGAAAATATATAG
Found at i:11775865 original size:20 final size:20
Alignment explanation
Indices: 11775829--11775867 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
11775819 GTTTTGAAAA
*
11775829 TATATTATATATTATATATG
1 TATATTATATATCATATATG
11775849 TATATTA-ATATACATATAT
1 TATATTATATAT-CATATAT
11775868 AGTTTCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (20 bp):
TATATTATATATCATATATG
Found at i:11780215 original size:27 final size:27
Alignment explanation
Indices: 11780171--11780253 Score: 94
Period size: 28 Copynumber: 3.0 Consensus size: 27
11780161 CATTCCAACG
** *
11780171 AGGGTATTTCAGTCATTTTAAAGCTCG
1 AGGGTATTTTGGTCATTTTAAAGCTCA
* * *
11780198 ATGGTATTTTGGTTATTTTTAAATCTCA
1 AGGGTATTTTGGTCA-TTTTAAAGCTCA
*
11780226 AGGGTATTTTGGTCATTTTAAAGTTCA
1 AGGGTATTTTGGTCATTTTAAAGCTCA
11780253 A
1 A
11780254 TCATAGAGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
27 22 0.49
28 23 0.51
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.45
Consensus pattern (27 bp):
AGGGTATTTTGGTCATTTTAAAGCTCA
Found at i:11781464 original size:15 final size:14
Alignment explanation
Indices: 11781432--11781468 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
11781422 TTTTATATGG
11781432 GAGAGAAAAAATAA
1 GAGAGAAAAAATAA
11781446 -AGAGAAAAAATAGA
1 GAGAGAAAAAATA-A
11781460 GAGAGAAAA
1 GAGAGAAAA
11781469 TTATAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 12 0.57
14 1 0.05
15 8 0.38
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.05
Consensus pattern (14 bp):
GAGAGAAAAAATAA
Found at i:11793084 original size:21 final size:21
Alignment explanation
Indices: 11793060--11793107 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
11793050 TAGAAAGGAC
*
11793060 CGAT-CATTTCTTTCAAGGGAT
1 CGATCCATTTCTGT-AAGGGAT
*
11793081 CGATCCTTTTCTGTAAGGGAT
1 CGATCCATTTCTGTAAGGGAT
*
11793102 CTATCC
1 CGATCC
11793108 TCAGTTGGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (21 bp):
CGATCCATTTCTGTAAGGGAT
Found at i:11799534 original size:93 final size:93
Alignment explanation
Indices: 11799375--11799562 Score: 376
Period size: 93 Copynumber: 2.0 Consensus size: 93
11799365 AAAAATCAAA
11799375 AAGATCTAACATCCAATGAGTAATGCTTTACAAATTCTCTCTAACCCTTTTATTCCACAAGCACG
1 AAGATCTAACATCCAATGAGTAATGCTTTACAAATTCTCTCTAACCCTTTTATTCCACAAGCACG
11799440 AAGCAATAACCAAAATTATTGAGTTTTT
66 AAGCAATAACCAAAATTATTGAGTTTTT
11799468 AAGATCTAACATCCAATGAGTAATGCTTTACAAATTCTCTCTAACCCTTTTATTCCACAAGCACG
1 AAGATCTAACATCCAATGAGTAATGCTTTACAAATTCTCTCTAACCCTTTTATTCCACAAGCACG
11799533 AAGCAATAACCAAAATTATTGAGTTTTT
66 AAGCAATAACCAAAATTATTGAGTTTTT
11799561 AA
1 AA
11799563 ACCATATATT
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 95 1.00
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (93 bp):
AAGATCTAACATCCAATGAGTAATGCTTTACAAATTCTCTCTAACCCTTTTATTCCACAAGCACG
AAGCAATAACCAAAATTATTGAGTTTTT
Found at i:11801966 original size:12 final size:12
Alignment explanation
Indices: 11801949--11801977 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
11801939 GAGGAAGATG
11801949 ATGAAGAAAAGA
1 ATGAAGAAAAGA
11801961 ATGAAGAAAAGA
1 ATGAAGAAAAGA
11801973 A-GAAG
1 ATGAAG
11801978 GATGTAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.66, C:0.00, G:0.28, T:0.07
Consensus pattern (12 bp):
ATGAAGAAAAGA
Found at i:11805230 original size:4 final size:4
Alignment explanation
Indices: 11805221--11805267 Score: 85
Period size: 4 Copynumber: 11.8 Consensus size: 4
11805211 AATATTGAAT
*
11805221 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
11805268 TGGTGGCATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (4 bp):
ATAC
Found at i:11805369 original size:22 final size:22
Alignment explanation
Indices: 11805293--11805369 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
11805283 TTGTTAACGG
* *
11805293 AAGTGCCTTAGCAATGGTACTA
1 AAGTGCCTTAGCACTGATACTA
* * *
11805315 AAGTGCCTCAGTACTAATA-TA
1 AAGTGCCTTAGCACTGATACTA
* *
11805336 GAAGTTCATTAGCACTGATACTA
1 -AAGTGCCTTAGCACTGATACTA
11805359 AAGTGCCTTAG
1 AAGTGCCTTAG
11805370 AACTATTGGG
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
21 2 0.05
22 37 0.90
23 2 0.05
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (22 bp):
AAGTGCCTTAGCACTGATACTA
Found at i:11805417 original size:24 final size:24
Alignment explanation
Indices: 11805389--11805463 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
11805379 GGATATATCC
11805389 AGACATTTCACATACATATACCTT
1 AGACATTTCACATACATATACCTT
* ** * *
11805413 AGACAATTGTCTTACATATAAC--
1 AGACATTTCACATACATATACCTT
11805435 AGACATTTCACATACATATACCTT
1 AGACATTTCACATACATATACCTT
11805459 AGACA
1 AGACA
11805464 ATTGTCTTAC
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
22 17 0.44
24 22 0.56
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.31
Consensus pattern (24 bp):
AGACATTTCACATACATATACCTT
Found at i:11805440 original size:46 final size:46
Alignment explanation
Indices: 11805388--11805479 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
11805378 GGGATATATC
11805388 CAGACATTTCACATACATATACCTTAGACAATTGTCTTACATATAA
1 CAGACATTTCACATACATATACCTTAGACAATTGTCTTACATATAA
11805434 CAGACATTTCACATACATATACCTTAGACAATTGTCTTACATATAA
1 CAGACATTTCACATACATATACCTTAGACAATTGTCTTACATATAA
11805480 GTAACGCGGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.33
Consensus pattern (46 bp):
CAGACATTTCACATACATATACCTTAGACAATTGTCTTACATATAA
Found at i:11805474 original size:24 final size:24
Alignment explanation
Indices: 11805401--11805478 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 24
11805391 ACATTTCACA
11805401 TACATATACCTTAGACAATTGTCT
1 TACATATACCTTAGACAATTGTCT
* * ** *
11805425 TACATATAAC--AGACATTTCACA
1 TACATATACCTTAGACAATTGTCT
11805447 TACATATACCTTAGACAATTGTCT
1 TACATATACCTTAGACAATTGTCT
11805471 TACATATA
1 TACATATA
11805479 AGTAACGCGG
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
22 17 0.40
24 25 0.60
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (24 bp):
TACATATACCTTAGACAATTGTCT
Found at i:11806227 original size:20 final size:19
Alignment explanation
Indices: 11806148--11806228 Score: 73
Period size: 18 Copynumber: 4.4 Consensus size: 19
11806138 CTCAGTATAC
* *
11806148 ATACTCTAGGGAAAGTATTG
1 ATACTCTTGGGAAA-TATCG
11806168 ATACTC-TGGG-AA-ATCG
1 ATACTCTTGGGAAATATCG
*
11806184 ATAATCTTGTGGAAATAT--
1 ATACTCTTG-GGAAATATCG
11806202 ATACTCTTGGGAAAGTATCG
1 ATACTCTTGGGAAA-TATCG
11806222 ATACTCT
1 ATACTCT
11806229 CATCTAGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
16 8 0.16
17 7 0.14
18 15 0.30
19 5 0.10
20 15 0.30
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (19 bp):
ATACTCTTGGGAAATATCG
Done.