Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 53 of 89
Found at i:12045080 original size:19 final size:20
Alignment explanation
Indices: 12045058--12045098 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
12045048 AAAATTTAGT
*
12045058 AAATACATTAAA-AAAATAA
1 AAATACAATAAATAAAATAA
12045077 AAATACAATAAATAAAATAA
1 AAATACAATAAATAAAATAA
12045097 AA
1 AA
12045099 GAGAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (20 bp):
AAATACAATAAATAAAATAA
Found at i:12049332 original size:17 final size:17
Alignment explanation
Indices: 12049296--12049334 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
12049286 ATGCTTATTA
12049296 TTTTATGTATTATAAAT
1 TTTTATGTATTATAAAT
12049313 TTTTA-GTATTATAAAT
1 TTTTATGTATTATAAAT
12049329 TTTTAT
1 TTTTAT
12049335 TACTAATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
TTTTATGTATTATAAAT
Found at i:12052002 original size:20 final size:20
Alignment explanation
Indices: 12051977--12052029 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
12051967 CCCTTCAAGA
12051977 AGTATCGATACTC-AAGGTCT
1 AGTATCGATACTCAAAGGT-T
*
12051997 AGTATCGATAATCAAAAGGTT
1 AGTATCGATACTC-AAAGGTT
*
12052018 GGTATCGATACT
1 AGTATCGATACT
12052030 GAGACATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 12 0.43
21 11 0.39
22 5 0.18
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (20 bp):
AGTATCGATACTCAAAGGTT
Found at i:12059122 original size:18 final size:20
Alignment explanation
Indices: 12059099--12059147 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
12059089 GCCAATTTGT
12059099 TATCGATACTC-AAGG-GAG
1 TATCGATACTCTAAGGAGAG
12059117 TATCGATAC-CTAAGGTAGAG
1 TATCGATACTCTAAGG-AGAG
*
12059137 TATCAATACTC
1 TATCGATACTC
12059148 CCCATAGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 1 0.04
18 13 0.50
20 11 0.42
21 1 0.04
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (20 bp):
TATCGATACTCTAAGGAGAG
Found at i:12065025 original size:31 final size:31
Alignment explanation
Indices: 12064987--12065258 Score: 312
Period size: 31 Copynumber: 8.8 Consensus size: 31
12064977 GAGTCGAGGG
* ** *
12064987 TTACCTATGTTCTCCCAGACATATGGATTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* * *
12065018 TTACCTATGTTCTTCGGGATATATAGACTAT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
12065049 TTACCTATGTTCTGT-GGGACATATGGAATGA
1 TTACCTATGTTCT-TCGGGACATATGGACTGT
* *
12065080 TTACCTATGTTCTTGGGGACATATGGACTAT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
** *
12065111 TTACCTATGTTCTTTAGGATATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
12065142 TTACCTATGTTCTTTGGGACATATGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
12065173 TTACCTATGTTCTTCGGGACATATGGATTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* * *
12065204 TTATCTATGTTCTTCGGGACTTATGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* * *
12065235 TTAACTATGTTCTTTGGAACATAT
1 TTACCTATGTTCTTCGGGACATAT
12065259 TTACTGGTCC
Statistics
Matches: 208, Mismatches: 31, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
30 1 0.00
31 206 0.99
32 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:12065146 original size:93 final size:93
Alignment explanation
Indices: 12064987--12065258 Score: 368
Period size: 93 Copynumber: 2.9 Consensus size: 93
12064977 GAGTCGAGGG
* ** * * *
12064987 TTACCTATGTTCTCCCAGACATATGGATTGTTTACCTATGTTCTTCGGGATATATAGACTATTTA
1 TTACCTATGTTCTTCGGGACATATGGATTATTTACCTATGTTCTTCGGGATATATGGACTGTTTA
*
12065052 CCTATGTTCTGTGGGACATATGGAATGA
66 CCTATGTTCTTTGGGACATATGGAATGA
* * **
12065080 TTACCTATGTTCTTGGGGACATATGGACTATTTACCTATGTTCTTTAGGATATATGGACTGTTTA
1 TTACCTATGTTCTTCGGGACATATGGATTATTTACCTATGTTCTTCGGGATATATGGACTGTTTA
*
12065145 CCTATGTTCTTTGGGACATATGGACTGA
66 CCTATGTTCTTTGGGACATATGGAATGA
* *
12065173 TTACCTATGTTCTTCGGGACATATGGATTGA-TTATCTATGTTCTTCGGGACT-TATGGACTGAT
1 TTACCTATGTTCTTCGGGACATATGGATT-ATTTACCTATGTTCTTCGGGA-TATATGGACTGTT
* *
12065236 TAACTATGTTCTTTGGAACATAT
64 TACCTATGTTCTTTGGGACATAT
12065259 TTACTGGTCC
Statistics
Matches: 157, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
93 155 0.99
94 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (93 bp):
TTACCTATGTTCTTCGGGACATATGGATTATTTACCTATGTTCTTCGGGATATATGGACTGTTTA
CCTATGTTCTTTGGGACATATGGAATGA
Found at i:12066050 original size:22 final size:22
Alignment explanation
Indices: 12066002--12066053 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
12065992 GGACGAAATT
*
12066002 ACTGTAGCAGGGGTATCGGTAC
1 ACTGTAGCAGGGGTATCGATAC
*
12066024 ACTGTAGCA-GGGTATTGATACC
1 ACTGTAGCAGGGGTATCGATA-C
*
12066046 CCTGTAGC
1 ACTGTAGC
12066054 GCTCTGGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (22 bp):
ACTGTAGCAGGGGTATCGATAC
Found at i:12070513 original size:31 final size:31
Alignment explanation
Indices: 12070264--12070497 Score: 351
Period size: 31 Copynumber: 7.5 Consensus size: 31
12070254 GAGTCGAGGG
* *
12070264 TTACCTATGTTCTTCGGGACATATGAACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGA
12070295 TTACCTATGTTCTTCGGGACATATGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGA
* *
12070326 TTACCTATGTTCTTCAGGACTTATGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGA
* * * *
12070357 TTACTTATGTTCTTGGGGACATATGGATTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGA
* * *
12070388 TTACCTATGTTCTTCGGGACATATAGATTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGA
*
12070419 TTACCTATGTTCTTCGGGACATATGAACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGA
*
12070450 TTACCTATGTTCTTCGGGACATGTGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGA
12070481 TTACCTATGTTCTTCGG
1 TTACCTATGTTCTTCGG
12070498 AAAAAATTTA
Statistics
Matches: 184, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 184 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGA
Found at i:12076443 original size:20 final size:20
Alignment explanation
Indices: 12076367--12076444 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
12076357 TTTGCCTTGC
*
12076367 AAAGGATCGATCCCATCTC-A
1 AAAGGATCGATCCC-TTTCAA
* *
12076387 AAAGGATCGATCCCCTGTGAA
1 AAAGGATCGAT-CCCTTTCAA
* *
12076408 AAATGATCAATCCCTTTCAA
1 AAAGGATCGATCCCTTTCAA
12076428 AAAGGATCGATCCCTTT
1 AAAGGATCGATCCCTTT
12076445 GTTTTTTGCT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 35 0.73
21 13 0.27
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (20 bp):
AAAGGATCGATCCCTTTCAA
Found at i:12087482 original size:126 final size:124
Alignment explanation
Indices: 12087269--12087576 Score: 314
Period size: 126 Copynumber: 2.5 Consensus size: 124
12087259 GAAGAAGCAA
* *
12087269 TCCGACAAGAGGTGGCCATGCTTAAAGCGGGAAACAAGGCACTCAGACAAGAGGTAGTCGAACTC
1 TCCGACAAGAGGTGGCCATGCTAAAAGCGGGAAACAAAGCACTCAGACAAGAGGT-GTCGAACTC
* * * * * **
12087334 GATGCCGGAAACGAAGCTCTCAGACAAGAGGTGGCCATATTTGAAGCGGAAAACAAAACAC
65 AAAGCCGGAAACGAA-CACTCAGACAAGAGGTGGCCACACTCAAAGCGGAAAACAAAACAC
* * *
12087395 TCCGACAAGAGGTGACCATGCTAAAAGCGGGAAACAAAGCACTCAGACAAGAGGTGTCGACAGTT
1 TCCGACAAGAGGTGGCCATGCTAAAAGCGGGAAACAAAGCACTCAGACAAGAGGTGTCGA-ACTC
* * * * *
12087460 AAAG-TGGAAGACGGTAA-ACTCAGACAAGAGGTGGTCACACTCAAAGTGGGAAACAAAGCAC
65 AAAGCCGGAA-AC-G-AACACTCAGACAAGAGGTGGCCACACTCAAAGCGGAAAACAAAACAC
* * * * ** * * *
12087521 TCAGACAAGAAGTGGCCGTACTCGAAGCCGGAAACGAAGCACTCAAACAAGAGGTG
1 TCCGACAAGAGGTGGCCATGCTAAAAGCGGGAAACAAAGCACTCAGACAAGAGGTG
12087577 GCCACGTTCG
Statistics
Matches: 151, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
125 9 0.06
126 139 0.92
127 1 0.01
128 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.28, T:0.13
Consensus pattern (124 bp):
TCCGACAAGAGGTGGCCATGCTAAAAGCGGGAAACAAAGCACTCAGACAAGAGGTGTCGAACTCA
AAGCCGGAAACGAACACTCAGACAAGAGGTGGCCACACTCAAAGCGGAAAACAAAACAC
Found at i:12087578 original size:42 final size:42
Alignment explanation
Indices: 12087263--12087580 Score: 223
Period size: 42 Copynumber: 7.6 Consensus size: 42
12087253 GAGGATGAAG
* * * * *
12087263 AAGCAATCCGACAAGAGGTGGCCATGCTTAAAGCGGGAAACA
1 AAGCACTCAGACAAGAGGTGGCCATACTCAAAGCCGGAAACA
* * * * * *
12087305 AGGCACTCAGACAAGAGGTAGTCGA-ACTCGATGCCGGAAACG
1 AAGCACTCAGACAAGAGGT-GGCCATACTCAAAGCCGGAAACA
* * **
12087347 AAGCTCTCAGACAAGAGGTGGCCATATTTGAAG-CGGAAAACA
1 AAGCACTCAGACAAGAGGTGGCCATACTCAAAGCCGG-AAACA
* * * * * *
12087389 AAACACTCCGACAAGAGGTGACCATGCTAAAAGCGGGAAACA
1 AAGCACTCAGACAAGAGGTGGCCATACTCAAAGCCGGAAACA
* * * * * * *
12087431 AAGCACTCAGACAAGAGGTGTCGACAGTTAAAG-TGGAAGACGGT
1 AAGCACTCAGACAAGAGGTGGCCATACTCAAAGCCGGAA-AC--A
* * **
12087475 AA--ACTCAGACAAGAGGTGGTCACACTCAAAGTGGGAAACA
1 AAGCACTCAGACAAGAGGTGGCCATACTCAAAGCCGGAAACA
* * * *
12087515 AAGCACTCAGACAAGAAGTGGCCGTACTCGAAGCCGGAAACG
1 AAGCACTCAGACAAGAGGTGGCCATACTCAAAGCCGGAAACA
*
12087557 AAGCACTCAAACAAGAGGTGGCCA
1 AAGCACTCAGACAAGAGGTGGCCA
12087581 CGTTCGAAGC
Statistics
Matches: 210, Mismatches: 56, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
40 2 0.01
41 10 0.05
42 187 0.89
43 9 0.04
44 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.28, T:0.12
Consensus pattern (42 bp):
AAGCACTCAGACAAGAGGTGGCCATACTCAAAGCCGGAAACA
Found at i:12088005 original size:117 final size:115
Alignment explanation
Indices: 12087799--12088175 Score: 470
Period size: 117 Copynumber: 3.2 Consensus size: 115
12087789 AGAGAGAGTA
* * * * *
12087799 ATGAATTTGGAGGCCAAGCTGAGTGAGGAAAGAGAAGAGACGTCGAAAGCCATTAGTGAAGTTGC
1 ATGAATTTGGAAGCCAAGTTGAGTGAGGAAGGAGAAGAGAAGT-GAAAGCCATTAGTGAAGTTAC
* * * *
12087864 GGAAAAGATGAGAAAAATGCAAAAGGAAAATGACAAGTTATGGCAGCAAGTG
65 -GAAAAGATGAGAGAAATGCAAAAGGAAAATGACAAGTTAAGGGAGGAAGTG
* *
12087916 ATGAATTTGGAAGCCAAGTTGAG-CATGGAAGGAGAAGAGAAGATGAAATCCATTAGTGAAGTTA
1 ATGAATTTGGAAGCCAAGTTGAGTGA-GGAAGGAGAAGAGAAG-TGAAAGCCATTAGTGAAGTT-
* * * *
12087980 ACGAAAAAATGAGAGACATGCAAAAGGAAAATGTCAAGTCAAGGGAGGAAGTG
63 ACGAAAAGATGAGAGAAATGCAAAAGGAAAATGACAAGTTAAGGGAGGAAGTG
* * * * *
12088033 AGGAATTTGGAAGCCAAGATGAGTGAGGAAGGAGAAGAGAAGTTGAAAGCTATGAGTGAAGCTGA
1 ATGAATTTGGAAGCCAAGTTGAGTGAGGAAGGAGAAGAGAAG-TGAAAGCCATTAGTGAAG-TTA
12088098 -GAATAAGATGAGAGAAATGCAAAAGGAAAATGACAAGTTAAGGGAGGAAGTG
64 CGAA-AAGATGAGAGAAATGCAAAAGGAAAATGACAAGTTAAGGGAGGAAGTG
* *
12088150 ACGAATTTGGAAGCAAAGTTGAGTGA
1 ATGAATTTGGAAGCCAAGTTGAGTGA
12088176 AAAAGAAGAA
Statistics
Matches: 224, Mismatches: 30, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
116 4 0.02
117 216 0.96
118 4 0.02
ACGTcount: A:0.43, C:0.08, G:0.32, T:0.17
Consensus pattern (115 bp):
ATGAATTTGGAAGCCAAGTTGAGTGAGGAAGGAGAAGAGAAGTGAAAGCCATTAGTGAAGTTACG
AAAAGATGAGAGAAATGCAAAAGGAAAATGACAAGTTAAGGGAGGAAGTG
Found at i:12088655 original size:15 final size:16
Alignment explanation
Indices: 12088635--12088667 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
12088625 GCGATATTAA
12088635 TGTTAA-ATATTGATT
1 TGTTAAGATATTGATT
*
12088650 TGTTAAGATTTTGATT
1 TGTTAAGATATTGATT
12088666 TG
1 TG
12088668 AATAATTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (16 bp):
TGTTAAGATATTGATT
Found at i:12090454 original size:33 final size:33
Alignment explanation
Indices: 12090413--12090537 Score: 105
Period size: 33 Copynumber: 3.8 Consensus size: 33
12090403 TATGACTAAA
12090413 TAAT-TTTGTTACAATTTGTTATTTTGAAAGAA-
1 TAATATTTGTTACAATTTGTTATTTTGAAA-AAT
* * * **
12090445 TATTATTTGTCACAATTTTTTATAATGAAAAAT
1 TAATATTTGTTACAATTTGTTATTTTGAAAAAT
* * *
12090478 TAATATTTGTTATAAATTGTTATTTTGATTAAA-
1 TAATATTTGTTACAATTTGTTATTTTGA-AAAAT
** *
12090511 TAA-ATTTGCCACAATTTTTTATTTTGA
1 TAATATTTGTTACAATTTGTTATTTTGA
12090538 CTAAATATTG
Statistics
Matches: 72, Mismatches: 18, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
32 24 0.33
33 45 0.62
34 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.51
Consensus pattern (33 bp):
TAATATTTGTTACAATTTGTTATTTTGAAAAAT
Found at i:12090464 original size:65 final size:64
Alignment explanation
Indices: 12090395--12090544 Score: 162
Period size: 65 Copynumber: 2.3 Consensus size: 64
12090385 TTTTTATAAT
* * *
12090395 TTTTTTACTATGACTAAATAAT-TTTGTTACAATTTGTTATTTTGA-AAGAATATTATTTGTCAC
1 TTTTTTA-TATGACTAAATAATATTTGTTACAAATTGTTATTTTGATAA-AATA-AATTTGCCAC
12090458 AA
63 AA
* * *
12090460 TTTTTTATAATGA-AAAATTAATATTTGTTATAAATTGTTATTTTGATTAAATAAATTTGCCACA
1 TTTTTTAT-ATGACTAAA-TAATATTTGTTACAAATTGTTATTTTGATAAAATAAATTTGCCACA
12090524 A
64 A
*
12090525 TTTTTTATTTTGACTAAATA
1 TTTTTTA-TATGACTAAATA
12090545 TTGGGATGAA
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
64 4 0.06
65 37 0.52
66 29 0.41
67 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (64 bp):
TTTTTTATATGACTAAATAATATTTGTTACAAATTGTTATTTTGATAAAATAAATTTGCCACAA
Found at i:12090638 original size:32 final size:32
Alignment explanation
Indices: 12090597--12090669 Score: 146
Period size: 32 Copynumber: 2.3 Consensus size: 32
12090587 ATTTAACGTC
12090597 TTATTGTGACTAAATCATTTTGTTGCAATTTG
1 TTATTGTGACTAAATCATTTTGTTGCAATTTG
12090629 TTATTGTGACTAAATCATTTTGTTGCAATTTG
1 TTATTGTGACTAAATCATTTTGTTGCAATTTG
12090661 TTATTGTGA
1 TTATTGTGA
12090670 AAGAATATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.25, C:0.08, G:0.16, T:0.51
Consensus pattern (32 bp):
TTATTGTGACTAAATCATTTTGTTGCAATTTG
Found at i:12095180 original size:181 final size:178
Alignment explanation
Indices: 12094945--12095270 Score: 397
Period size: 181 Copynumber: 1.8 Consensus size: 178
12094935 GTGAATGTCA
* * ** **
12094945 TTATTTTTTTGTGACAATGTCTTTTGTAATAATTATTAACACTTATAGTTACAAAATTTATCATT
1 TTATTTTTTTGTGACAATGTCTTTTGTAACAATAATTAACACTTATAGTTACAAAACATATCACC
* *
12095010 ATATGACCTT-TTTGGCGCAAAAATATATGGAGGAAAATC-TTTGTGACAATATATTTTGTCACT
66 ATATGACCTTGTTTGGCACAAAAA-AT-TGGA-GAAAATCATTTGTGACAATACATTTTGTCACT
12095073 ATAATTAAAACATATAATGGCAAACATTGTTTTTTACTAAAAACTTAGATC
128 ATAATTAAAACATATAATGGCAAACATTGTTTTTTACTAAAAACTTAGATC
* * * *
12095124 TTATTATTTGTTGTGACAATTTTTTTTGTAACAATAATTATA-GCTTATAGTTACAAAACATGTC
1 TTATT-TTT-TTGTGACAATGTCTTTTGTAACAATAATTA-ACACTTATAGTTACAAAACATATC
** *** * * *
12095188 ACCATATGATTTTGTTTTTTACCAAAAATTGGAGATAATCATTTGTGACTATACATTTTGTCACT
63 ACCATATGACCTTGTTTGGCACAAAAAATTGGAGAAAATCATTTGTGACAATACATTTTGTCACT
12095253 ATAATTAAAACATATAAT
128 ATAATTAAAACATATAAT
12095271 TACAAACAAA
Statistics
Matches: 122, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
179 11 0.09
180 47 0.39
181 55 0.45
182 9 0.07
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (178 bp):
TTATTTTTTTGTGACAATGTCTTTTGTAACAATAATTAACACTTATAGTTACAAAACATATCACC
ATATGACCTTGTTTGGCACAAAAAATTGGAGAAAATCATTTGTGACAATACATTTTGTCACTATA
ATTAAAACATATAATGGCAAACATTGTTTTTTACTAAAAACTTAGATC
Found at i:12098151 original size:23 final size:22
Alignment explanation
Indices: 12098106--12098165 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
12098096 TTATCCGTCA
12098106 GACCTTCTAGAATGC--TAACTG
1 GACCTTCTAGAA-GCTATAACTG
12098127 GACCTTCTAGAAGCTAATAACTG
1 GACCTTCTAGAAGCT-ATAACTG
* *
12098150 GACCTTTTAAAAGCTA
1 GACCTTCTAGAAGCTA
12098166 CTACATCTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 2 0.06
21 12 0.35
22 1 0.03
23 19 0.56
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (22 bp):
GACCTTCTAGAAGCTATAACTG
Found at i:12099591 original size:19 final size:19
Alignment explanation
Indices: 12099567--12099618 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
12099557 TTTGACCCTT
12099567 AGTGCATCGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
12099586 AGTGCATCGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
*
12099605 AGTGCATCGATGCA
1 AGTGCATCGGTGCA
12099619 TCAAGTGCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (19 bp):
AGTGCATCGGTGCACTAAG
Found at i:12099640 original size:18 final size:17
Alignment explanation
Indices: 12099567--12099634 Score: 55
Period size: 19 Copynumber: 3.7 Consensus size: 17
12099557 TTTGACCCTT
* *
12099567 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
* *
12099585 GAGTGCATCGGTGCACTAA
1 -AGTGCATCGATGCA-TCA
12099604 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
12099622 AGTGCATTCGATG
1 AGTGCA-TCGATG
12099635 TTTCAAAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
17 6 0.13
18 8 0.17
19 32 0.70
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:12099692 original size:64 final size:64
Alignment explanation
Indices: 12099606--12099814 Score: 210
Period size: 65 Copynumber: 3.2 Consensus size: 64
12099596 TGCACTAAGA
* *
12099606 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATATCCAGAGTGCATCGATGCATGGCTG
* ** * *
12099670 GTGCATCGATGCGTCAAATGCATTCGATGTTTTCATAAA-ATCCTCATTGCATCGATGCATAG-T
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATATCCAGAGTGCATCGATGCATGGCT
*
12099733 AT
64 -G
* * * ** *
12099735 GTGCATCGGTACATGAAATGCATTCGATG-TTCAATTTATTCATG-GTGCATCGATGCATGGCTT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATATCCA-GAGTGCATCGATGCATGGC-T
12099798 G
64 G
*
12099799 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
12099815 CTCTGAAAAA
Statistics
Matches: 116, Mismatches: 22, Indels: 14
0.76 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 21 0.18
64 42 0.36
65 49 0.42
66 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATATCCAGAGTGCATCGATGCATGGCTG
Found at i:12100108 original size:14 final size:14
Alignment explanation
Indices: 12100089--12100118 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
12100079 TCACTTATTC
12100089 TTTTCTTCCTTTTT
1 TTTTCTTCCTTTTT
12100103 TTTTCTTCCTTTTT
1 TTTTCTTCCTTTTT
12100117 TT
1 TT
12100119 GAACCAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTCCTTTTT
Found at i:12100498 original size:22 final size:22
Alignment explanation
Indices: 12100470--12100514 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
12100460 TGAGCATGAA
12100470 TGAAAATATATGCTCGTTAAGC
1 TGAAAATATATGCTCGTTAAGC
12100492 TGAAAATATATGCTCGTTAAGC
1 TGAAAATATATGCTCGTTAAGC
12100514 T
1 T
12100515 CAAATCTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (22 bp):
TGAAAATATATGCTCGTTAAGC
Found at i:12103360 original size:65 final size:64
Alignment explanation
Indices: 12103226--12103385 Score: 189
Period size: 65 Copynumber: 2.5 Consensus size: 64
12103216 TGCACTAAGA
* * *
12103226 GTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAACCAGAGTGCATCGATGCATGGGT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAACCACAGTGCATCGATGCATGGAT
* * ** *
12103289 GATGCATCGATGCATCAAATTCATTCGATGTTTTCATAAA-ATCTTCAGTGCATCGATGCATAGT
1 G-TGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAACCACAGTGCATCGATGCAT-GG
12103353 AT
63 AT
* *
12103355 GTGCATCGGTGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
12103386 CAATTTATTC
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
63 1 0.01
64 26 0.32
65 49 0.60
66 6 0.07
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAACCACAGTGCATCGATGCATGGAT
Found at i:12103422 original size:20 final size:20
Alignment explanation
Indices: 12103397--12103446 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
12103387 AATTTATTCA
12103397 TGGTGCATCGATTCATGGCT
1 TGGTGCATCGATTCATGGCT
12103417 TGGTGCATCGATTCATGGCT
1 TGGTGCATCGATTCATGGCT
12103437 TGGTGCATCG
1 TGGTGCATCG
12103447 GTGCATCACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.14, C:0.20, G:0.32, T:0.34
Consensus pattern (20 bp):
TGGTGCATCGATTCATGGCT
Found at i:12111578 original size:18 final size:17
Alignment explanation
Indices: 12111524--12111572 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
12111514 TTGGACCCTT
* *
12111524 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
12111542 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
12111560 AGTGCATTCGATG
1 AGTGCA-TCGATG
12111573 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:12111592 original size:64 final size:63
Alignment explanation
Indices: 12111523--12111730 Score: 224
Period size: 64 Copynumber: 3.3 Consensus size: 63
12111513 GTTGGACCCT
* *
12111523 TAGTGCATCGGTGCACTAAG-AGTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATATCCA
1 TAGTGCATCGATGCA-T-AGTAGTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATATCCA
* * * *
12111587 TAGTGCATCGATGCATGGCTAGTGCATCGATGCATCAAATTCATTCGATGTTTTAATAAAATCC-
1 TAGTGCATCGATGCATAG-TAGTGCATCGATGCATCAAATGCATTCGATGTTTCAA-AATATCCA
* * * ** *
12111651 TCAGTGCATCGATGCATAGTATGTGTATCGGTGCATGAAATGCATTCGATG-TTCAATTTATTCA
1 T-AGTGCATCGATGCATAGTA-GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATATCCA
*
12111715 TGGTGCATCGATGCAT
1 TAGTGCATCGATGCAT
12111731 GGCTTGGTGC
Statistics
Matches: 121, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.15
64 55 0.45
65 47 0.39
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (63 bp):
TAGTGCATCGATGCATAGTAGTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATATCCA
Found at i:12111697 original size:65 final size:64
Alignment explanation
Indices: 12111543--12111752 Score: 219
Period size: 64 Copynumber: 3.3 Consensus size: 64
12111533 GTGCACTAAG
* * *
12111543 AGTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATATCCATAGTGCATCGATGCATGGCT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTCAAAAAATCCATAGTGCATCGATGCATAGCT
* *
12111607 AGTGCATCGATGCATCAAATTCATTCGATGTTTTAATAAAATCC-TCAGTGCATCGATGCATAG-
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTCAA-AAAATCCAT-AGTGCATCGATGCATAGC
12111670 T
64 T
* * * *** * * *
12111671 ATGTGTATCGGTGCATGAAATGCATTCGATG-TTCAATTTATTCATGGTGCATCGATGCATGGCT
1 A-GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAAAATCCATAGTGCATCGATGCATAGC-
12111735 T
64 T
* *
12111736 GGTGCATCGGTGCATCA
1 AGTGCATCGATGCATCA
12111753 CTCTGAAAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
63 18 0.15
64 55 0.45
65 48 0.40
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (64 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTCAAAAAATCCATAGTGCATCGATGCATAGCT
Found at i:12112062 original size:11 final size:12
Alignment explanation
Indices: 12112038--12112065 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
12112028 TCACTTATTA
12112038 TTTTCTTCCTTT
1 TTTTCTTCCTTT
12112050 TTTTCTTCCTTT
1 TTTTCTTCCTTT
12112062 TTTT
1 TTTT
12112066 GAACCAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCTTCCTTT
Found at i:12113328 original size:17 final size:17
Alignment explanation
Indices: 12113308--12113340 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
12113298 AAAAAAAACT
12113308 CATCTATGCCAAAAGAA
1 CATCTATGCCAAAAGAA
*
12113325 CATCTTTGCCAAAAGA
1 CATCTATGCCAAAAGA
12113341 TGAGTTCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.21
Consensus pattern (17 bp):
CATCTATGCCAAAAGAA
Found at i:12124941 original size:13 final size:13
Alignment explanation
Indices: 12124923--12124956 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
12124913 GTGCTTTCAA
12124923 CTTTTCTTTATTT
1 CTTTTCTTTATTT
12124936 CTTTTCTTTATTT
1 CTTTTCTTTATTT
12124949 CTTTTCTT
1 CTTTTCTT
12124957 CTCTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (13 bp):
CTTTTCTTTATTT
Found at i:12124963 original size:13 final size:13
Alignment explanation
Indices: 12124923--12124966 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
12124913 GTGCTTTCAA
*
12124923 CTTTTCTTTATTT
1 CTTTTCTTTACTT
*
12124936 CTTTTCTTTATTT
1 CTTTTCTTTACTT
12124949 CTTTTCTTCT-CTT
1 CTTTTCTT-TACTT
12124962 CTTTT
1 CTTTT
12124967 TATGAGTGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 28 0.97
14 1 0.03
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (13 bp):
CTTTTCTTTACTT
Found at i:12125014 original size:28 final size:29
Alignment explanation
Indices: 12124951--12125014 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
12124941 CTTTATTTCT
* * *
12124951 TTTCTTCTCTTCTTTTTATGAGTGCTTGA
1 TTTCTTTTCTTCTTTTTAGGAGTGCTTAA
12124980 TTT-TTTTCTTC-TTTT-GGAGTGCTTCAA
1 TTTCTTTTCTTCTTTTTAGGAGTGCTT-AA
12125007 TTTCTTTT
1 TTTCTTTT
12125015 GCTGATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 8 0.27
27 8 0.27
28 11 0.37
29 3 0.10
ACGTcount: A:0.09, C:0.16, G:0.12, T:0.62
Consensus pattern (29 bp):
TTTCTTTTCTTCTTTTTAGGAGTGCTTAA
Found at i:12125069 original size:8 final size:9
Alignment explanation
Indices: 12125048--12125079 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
12125038 CTTGCACTTC
*
12125048 TTTTTGTTG
1 TTTTTGTTA
12125057 TTTTTGTTA
1 TTTTTGTTA
12125066 TTTTTGTTA
1 TTTTTGTTA
12125075 TTTTT
1 TTTTT
12125080 TTTGTTGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.06, C:0.00, G:0.12, T:0.81
Consensus pattern (9 bp):
TTTTTGTTA
Found at i:12127036 original size:21 final size:21
Alignment explanation
Indices: 12127006--12127045 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12126996 CATGGCCCTG
*
12127006 TGCAAAGTGCTTTAGAAAGCA
1 TGCAAAGTGCTTCAGAAAGCA
*
12127027 TGCAAGGTGCTTCAGAAAG
1 TGCAAAGTGCTTCAGAAAG
12127046 TGAAACACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.23
Consensus pattern (21 bp):
TGCAAAGTGCTTCAGAAAGCA
Found at i:12130834 original size:9 final size:9
Alignment explanation
Indices: 12130822--12130867 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
12130812 TAGGGGAGAT
12130822 GGAGAAGAA
1 GGAGAAGAA
*
12130831 GGAGAAGGA
1 GGAGAAGAA
* *
12130840 GGAGGAGGA
1 GGAGAAGAA
12130849 GGAGAAGAA
1 GGAGAAGAA
*
12130858 GAAGAAGAA
1 GGAGAAGAA
12130867 G
1 G
12130868 AAAAAGTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (9 bp):
GGAGAAGAA
Found at i:12131205 original size:56 final size:56
Alignment explanation
Indices: 12131145--12131251 Score: 135
Period size: 56 Copynumber: 1.9 Consensus size: 56
12131135 TATCTATGGG
* * * *
12131145 AATAAGAAATTATGGCTGATATTTTTCTATTCACA-ATAGTATAAAATAACTGAAAA
1 AATAAGAAAGTATGGCTAATATATCTCTATTCACATA-AGTATAAAATAACTGAAAA
* * *
12131201 AATAAGAAAGTATGGTTAATATATCTCTATTTACATAAGTGTAAAATAACT
1 AATAAGAAAGTATGGCTAATATATCTCTATTCACATAAGTATAAAATAACT
12131252 ATAGAAAGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
56 42 0.98
57 1 0.02
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (56 bp):
AATAAGAAAGTATGGCTAATATATCTCTATTCACATAAGTATAAAATAACTGAAAA
Found at i:12131846 original size:52 final size:52
Alignment explanation
Indices: 12131733--12131846 Score: 138
Period size: 52 Copynumber: 2.2 Consensus size: 52
12131723 AATGTGATAG
* * * * * *
12131733 ATTTTAATAAAATAAATAAATTTTATTGGAACTTGTCATCTCGAGGTGACTA
1 ATTTCAATAAAAAAAATAAATTTTATTAGAACTCGTCATCTCGACGTGACAA
* * **
12131785 GTTTGAATAAAAAAAATATTTTTTATTAGAACTCGTCATCTCGACGTGACAA
1 ATTTCAATAAAAAAAATAAATTTTATTAGAACTCGTCATCTCGACGTGACAA
12131837 ATTTCAATAA
1 ATTTCAATAA
12131847 CACTGCAGAA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (52 bp):
ATTTCAATAAAAAAAATAAATTTTATTAGAACTCGTCATCTCGACGTGACAA
Found at i:12136727 original size:3 final size:3
Alignment explanation
Indices: 12136721--12136792 Score: 69
Period size: 3 Copynumber: 24.3 Consensus size: 3
12136711 AATAATTATT
*
12136721 TAA TAA TAA T-A TAA T-A TATA TAA T-A TAA TAA TAA TAA TATT TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TA-A TAA
* **
12136765 TAA TAA TAA AAA TAA TTT TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
12136793 TTAAGTAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
2 6 0.11
3 45 0.80
4 5 0.09
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:12136729 original size:14 final size:14
Alignment explanation
Indices: 12136710--12136771 Score: 51
Period size: 14 Copynumber: 4.5 Consensus size: 14
12136700 TTTGGGCTTG
12136710 TAATAATTATTTAA
1 TAATAATTATTTAA
12136724 TAATAA-TA--TAA
1 TAATAATTATTTAA
* *
12136735 T-ATATATAATATAA
1 TAATA-ATTATTTAA
12136749 TAATAATAATATTTAA
1 TAATAAT--TATTTAA
12136765 TAATAAT
1 TAATAAT
12136772 AAAAATAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
10 3 0.08
11 5 0.13
12 1 0.03
13 2 0.05
14 12 0.32
15 3 0.08
16 12 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATAATTATTTAA
Found at i:12136780 original size:31 final size:31
Alignment explanation
Indices: 12136721--12136810 Score: 82
Period size: 31 Copynumber: 2.9 Consensus size: 31
12136711 AATAATTATT
*
12136721 TAATAATAATA--TAAT-AT-ATATAATATAA
1 TAATAATAATATTTAATAATAATA-AAAATAA
12136749 TAATAATAATATTTAATAATAATAAAAATAA
1 TAATAATAATATTTAATAATAATAAAAATAA
**
12136780 TTTTAATAATAATTTAAGTAA-AATGAAAAAT
1 TAATAATAAT-ATTTAA-TAATAAT-AAAAAT
12136811 TGGTGTTTAC
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
28 11 0.21
30 4 0.08
31 16 0.31
32 12 0.23
33 9 0.17
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (31 bp):
TAATAATAATATTTAATAATAATAAAAATAA
Found at i:12137243 original size:151 final size:151
Alignment explanation
Indices: 12136969--12138244 Score: 2304
Period size: 151 Copynumber: 8.4 Consensus size: 151
12136959 ACTGAAGGGT
* *
12136969 TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTCGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
*
12137034 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12137099 GACTTACAGATGACCCGAAGG
131 GACTTACAGATGACCCGAAGG
*
12137120 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTACAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
* * * *
12137185 GACCCTAAGGCTTTGAAAATATCAAAAAGCTCCCAAAGACTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12137250 GACTTACAGATGACCCGAAGG
131 GACTTACAGATGACCCGAAGG
* *
12137271 CTTGAAAGCATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
* *
12137336 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12137401 GACTTACAGATGACCCGAAGG
131 GACTTACAGATGACCCGAAGG
* *
12137422 CTTGAAAACATCAAAAAGCTCCGGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
*
12137487 GACCCGAAGGCTTTGAAAACATCAAATAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
* *
12137552 GACTTACAGATGACCCTAAGAC
131 GACTTACAGATGACCCGAAG-G
12137574 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
12137639 GACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
*
12137703 GACTTACAGATGACCCTAAGG
131 GACTTACAGATGACCCGAAGG
*
12137724 CTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGA
1 -TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGA
12137789 TGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCA
65 TGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCA
12137853 GGACTTACAGATGACCCGAAGG
130 GGACTTACAGATGACCCGAAGG
12137875 CTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGA
1 -TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGA
*
12137940 TGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCA
65 TGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCA
12138005 GGACTTACAGATGACCCGAAGG
130 GGACTTACAGATGACCCGAAGG
*
12138027 CTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
12138092 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
*
12138157 GACTTACAGATGACCCTAAGG
131 GACTTACAGATGACCCGAAGG
12138178 CTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGA
1 -TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGA
12138243 TG
65 TG
12138245 TGGGAAATAG
Statistics
Matches: 1089, Mismatches: 32, Indels: 7
0.97 0.03 0.01
Matches are distributed among these distances:
151 876 0.80
152 213 0.20
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (151 bp):
TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
GACTTACAGATGACCCGAAGG
Found at i:12137364 original size:227 final size:228
Alignment explanation
Indices: 12136969--12138244 Score: 2357
Period size: 227 Copynumber: 5.6 Consensus size: 228
12136959 ACTGAAGGGT
* *
12136969 TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTCGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
12137034 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12137099 GACTTACAGATGACCCGAAGG-TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
* *
12137163 ATGCACTACAGGACTTACAGATGACCCTAAGGC
196 ATGCACTGCAGGACTTACAGATGACCCGAAGGC
* * *
12137196 TTTGAAAATATCAAAAAGCTCCCAAAGACTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
* *
12137261 GACCCGAAGGC-TTGAAAGCATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
*
12137325 GACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
*
12137390 ATGCACTGTAGGACTTACAGATGACCCGAAGGC
196 ATGCACTGCAGGACTTACAGATGACCCGAAGGC
*
12137423 -TTGAAAACATCAAAAAGCTCCGGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
* *
12137487 GACCCGAAGGCTTTGAAAACATCAAATAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
* *
12137552 GACTTACAGATGACCCTAAGACTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
12137617 ATGCACTGCAGGACTTACAGATGACCCGAAGGC
196 ATGCACTGCAGGACTTACAGATGACCCGAAGGC
12137650 -TTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
*
12137714 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAG
66 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12137779 GACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
12137843 ATGCACTGCAGGACTTACAGATGACCCGAAGGC
196 ATGCACTGCAGGACTTACAGATGACCCGAAGGC
12137876 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
12137941 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12138006 GACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
12138070 ATGCACTGCAGGACTTACAGATGACCCGAAGGC
196 ATGCACTGCAGGACTTACAGATGACCCGAAGGC
12138103 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
12138168 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12138233 GACTTACAGATG
131 GACTTACAGATG
12138245 TGGGAAATAG
Statistics
Matches: 1020, Mismatches: 26, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
226 218 0.21
227 802 0.79
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (228 bp):
TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
ATGCACTGCAGGACTTACAGATGACCCGAAGGC
Found at i:12137664 original size:378 final size:379
Alignment explanation
Indices: 12136969--12138244 Score: 2396
Period size: 378 Copynumber: 3.4 Consensus size: 379
12136959 ACTGAAGGGT
* *
12136969 TTTGAAAACATCAAAAAGATCCCGAAGGCTTTTCGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
*
12137034 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12137099 GACTTACAGATGACCCGAAGG-TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
* * * *
12137163 ATGCACTACAGGACTTACAGATGACCCTAAGGCTTTGAAAATATCAAAAAGCTCCCAAAGACTTT
196 ATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
*
12137228 TTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTGAAAGCATCAAAAAGCTCC
261 TTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCC
12137293 CGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC
326 CGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC
*
12137347 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
*
12137412 GACCCGAAGGC-TTGAAAACATCAAAAAGCTCCGGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
*
12137476 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAATAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
*
12137541 ATGCACTGCAGGACTTACAGATGACCCTAAGACTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
196 ATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
12137606 TTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCC
261 TTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCC
12137671 CGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC
326 CGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC
*
12137725 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
12137790 GACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12137854 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
131 GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
12137919 ATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
196 ATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
12137984 TTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCC
261 TTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCC
*
12138049 CGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC
326 CGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC
12138103 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
*
12138168 GACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
66 GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
12138233 GACTTACAGATG
131 GACTTACAGATG
12138245 TGGGAAATAG
Statistics
Matches: 878, Mismatches: 18, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
377 73 0.08
378 740 0.84
379 65 0.07
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (379 bp):
TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGAT
GACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAG
GACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATC
ATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTT
TTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCC
CGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC
Found at i:12138521 original size:163 final size:165
Alignment explanation
Indices: 12138248--12138568 Score: 556
Period size: 163 Copynumber: 2.0 Consensus size: 165
12138238 ACAGATGTGG
*
12138248 GAAATAGTTTACTAAGTAAGAAACTATGAAAATCATTTTCTTACTTTTCAACAATTTCATTTTAA
1 GAAATAGTTTACTAAG-AAGAAACTAAGAAAATCATTTTCTTACTTTTCAACAATTTCATTTTAA
12138313 AAAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTCTGTTTTTTGAAATAACATGCTGAT
65 AAAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTCTGTTTTTTGAAATAACATGCTGAT
*
12138378 TGGGTAACATGCCCCAATCTCAAGATAAGGCTGTTA
130 TGGGTAACATGACCCAATCTCAAGATAAGGCTGTTA
* * *
12138414 GAAATAGTTTACTAA-AA-AAACTAAGAAAATCGTTTTCTTACTTTTCAATAATTTCATTTTAGA
1 GAAATAGTTTACTAAGAAGAAACTAAGAAAATCATTTTCTTACTTTTCAACAATTTCATTTTAAA
*
12138477 AAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTCTGTTTTTTGAAATAACATGTTGATT
66 AAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTCTGTTTTTTGAAATAACATGCTGATT
*
12138542 GGGTAACATGACCCAATCTGAAGATAA
131 GGGTAACATGACCCAATCTCAAGATAA
12138569 TGCTCATTTT
Statistics
Matches: 148, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
163 131 0.89
164 2 0.01
166 15 0.10
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (165 bp):
GAAATAGTTTACTAAGAAGAAACTAAGAAAATCATTTTCTTACTTTTCAACAATTTCATTTTAAA
AAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTCTGTTTTTTGAAATAACATGCTGATT
GGGTAACATGACCCAATCTCAAGATAAGGCTGTTA
Found at i:12139111 original size:22 final size:22
Alignment explanation
Indices: 12139083--12139137 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
12139073 CATAAAGCTT
*
12139083 TCATCTTTGAAAAGAGAATTTA
1 TCATCTTTGAAAAGAGAATCTA
*
12139105 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
12139127 TCATCTTTGAA
1 TCATCTTTGAA
12139138 GAGTGTAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:12143208 original size:158 final size:159
Alignment explanation
Indices: 12142999--12143316 Score: 613
Period size: 160 Copynumber: 2.0 Consensus size: 159
12142989 GACTTGTTCA
12142999 TGGCTCTATGATGTAATCTTCTAGAAACATGAATTGATGGTTGGGGAAAATAATTTGTCTGGTGA
1 TGGCTCTATGATGTAATCTTCTAGAAACATGAATTGATGGTTGGGGAAAATAATTTGTCTGGTGA
12143064 -GCTTATCGCCCTCAACATGAGATAAACGATAATCTTTC-TTATGAGCTGCTAATAATGTCATAG
66 TGCTTATCGCCCTCAACATGAGATAAACGATAATCTTTCTTTATGAGCTGCTAATAATGTCATAG
12143127 GAGAGTGTCACAAGTTCAATTCTCCAGAC
131 GAGAGTGTCACAAGTTCAATTCTCCAGAC
12143156 TGGCTCTATGATGTAATCTTCTAGAGAACATGAATTGATGGTTGGGGAAAATAATTTGTCTGGTG
1 TGGCTCTATGATGTAATCTTCTAGA-AACATGAATTGATGGTTGGGGAAAATAATTTGTCTGGTG
12143221 ATGCTTATCGCCCTCAACATGAGATAAACGATAATCTTTCTTTATGAGCTGCTAATAATGTCATA
65 ATGCTTATCGCCCTCAACATGAGATAAACGATAATCTTTCTTTATGAGCTGCTAATAATGTCATA
12143286 GGAGAGTGTCACAAGTTCAATTCTCCAGAC
130 GGAGAGTGTCACAAGTTCAATTCTCCAGAC
12143316 T
1 T
12143317 TTCTGGCTTA
Statistics
Matches: 158, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
157 25 0.16
158 40 0.25
159 38 0.24
160 55 0.35
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (159 bp):
TGGCTCTATGATGTAATCTTCTAGAAACATGAATTGATGGTTGGGGAAAATAATTTGTCTGGTGA
TGCTTATCGCCCTCAACATGAGATAAACGATAATCTTTCTTTATGAGCTGCTAATAATGTCATAG
GAGAGTGTCACAAGTTCAATTCTCCAGAC
Found at i:12148270 original size:18 final size:16
Alignment explanation
Indices: 12148234--12148274 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
12148224 TACCTTCATA
*
12148234 AATAAAAAATATTAAT
1 AATAAAAAATAATAAT
12148250 AATATAAAAATAATAAGT
1 AATA-AAAAATAATAA-T
12148268 AATAAAA
1 AATAAAA
12148275 TTTGAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 4 0.18
17 13 0.59
18 5 0.23
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (16 bp):
AATAAAAAATAATAAT
Found at i:12149082 original size:38 final size:39
Alignment explanation
Indices: 12149004--12149086 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 39
12148994 TCGATATTAA
*
12149004 TAAATAAAAAAAATGTAATAATTTTTCATAAAAATGATT
1 TAAATAAAAAAAATGTAATAATTTTTCATAAAAATAATT
**
12149043 TAAATAAAAATAAAT-T-ATAATTTTT-ATAATATTTAATT
1 TAAATAAAAA-AAATGTAATAATTTTTCATAA-AAATAATT
12149081 TAAATA
1 TAAATA
12149087 TATTTATAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
37 4 0.10
38 20 0.51
39 11 0.28
40 4 0.10
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.41
Consensus pattern (39 bp):
TAAATAAAAAAAATGTAATAATTTTTCATAAAAATAATT
Found at i:12150540 original size:11 final size:12
Alignment explanation
Indices: 12150524--12150580 Score: 55
Period size: 11 Copynumber: 4.7 Consensus size: 12
12150514 TTTGGGCTTG
*
12150524 TAATAAT-TATT
1 TAATAATATATA
12150535 TAATAATA-ATA
1 TAATAATATATA
12150546 TAATATATATAATA
1 TAATA-ATAT-ATA
*
12150560 TAATAATAATATT
1 TAATAAT-ATATA
12150573 TAATAATA
1 TAATAATA
12150581 ATAAAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 14 0.36
12 4 0.10
13 11 0.28
14 10 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATAATATATA
Found at i:12150541 original size:3 final size:3
Alignment explanation
Indices: 12150535--12150603 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
12150525 AATAATTATT
*
12150535 TAA TAA TAA T-A TAA T-A TATA TAA T-A TAA TAA TAA TATT TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TA-A TAA TAA
* **
12150579 TAA TAA AAA TAA TTT TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
12150604 TTAAGTAAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
2 6 0.11
3 42 0.79
4 5 0.09
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:12150584 original size:22 final size:22
Alignment explanation
Indices: 12150524--12150603 Score: 93
Period size: 21 Copynumber: 3.9 Consensus size: 22
12150514 TTTGGGCTTG
12150524 TAATAATTATTTAATAATAAT-A
1 TAATAA-TATTTAATAATAATAA
12150546 TAAT-ATA--T-ATAAT-ATAA
1 TAATAATATTTAATAATAATAA
12150563 TAATAATATTTAATAATAATAA
1 TAATAATATTTAATAATAATAA
*
12150585 AAATAAT-TTTAATAATAAT
1 TAATAATATTTAATAATAAT
12150604 TTAAGTAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
16 2 0.04
17 10 0.20
18 4 0.08
20 3 0.06
21 18 0.35
22 14 0.27
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAATAATATTTAATAATAATAA
Found at i:12150811 original size:30 final size:31
Alignment explanation
Indices: 12150777--12150835 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
12150767 TTGAGTATTT
*
12150777 TTCTTTAAACGAGCTCATCAAA-CAAAATTG
1 TTCTTCAAACGAGCTCATCAAACCAAAATTG
*
12150807 TTCTTCAAATGAGCTCATCAAACCAAAAT
1 TTCTTCAAACGAGCTCATCAAACCAAAAT
12150836 ATTATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (31 bp):
TTCTTCAAACGAGCTCATCAAACCAAAATTG
Found at i:12151186 original size:21 final size:21
Alignment explanation
Indices: 12151157--12151196 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12151147 TAGTGATTTG
* *
12151157 TATCTGATTCAAGAAATTAGA
1 TATCCGATTCAAAAAATTAGA
12151178 TATCCGATTCAAAAAATTA
1 TATCCGATTCAAAAAATTA
12151197 CTATTTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (21 bp):
TATCCGATTCAAAAAATTAGA
Found at i:12151424 original size:2 final size:2
Alignment explanation
Indices: 12151417--12151459 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
12151407 ACCTCTTATT
12151417 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12151459 T
1 T
12151460 TTAATTACTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:12155735 original size:6 final size:6
Alignment explanation
Indices: 12155721--12155750 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
12155711 TAAAGCAAAC
*
12155721 TGGATA TGGAAA TGGAAA TGGAAA TGGAAA
1 TGGAAA TGGAAA TGGAAA TGGAAA TGGAAA
12155751 GTCAGGCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.33, T:0.20
Consensus pattern (6 bp):
TGGAAA
Found at i:12161379 original size:72 final size:72
Alignment explanation
Indices: 12161298--12161549 Score: 303
Period size: 72 Copynumber: 3.5 Consensus size: 72
12161288 GAATATCAGG
*
12161298 AAAAAAAAGAGTGAACGTCTAAAGTGAGATACAAATAAATTTGAAAAAAAAAAGTCAAGAAAATC
1 AAAAAAAAGAGTGAACGTCCAAAGTGAGATACAAATAAATTTGAAAAAAAAAAGTCAAGAAAATC
12161363 ATATTGA
66 ATATTGA
* *** * ***
12161370 AAAAAAAAGAGTGAACGTCCAAAGTGAGATAC-AAT--TTTCTGAAGTTAATAAGCTTTGTGATA
1 AAAAAAAAGAGTGAACGTCCAAAGTGAGATACAAATAAATT-TGAAAAAAAAAAG--TCAAGA-A
* ** * *
12161432 TAGAATATCAGG
62 AATCATAT-TGA
*
12161444 AAAAAAAAGAGTGAACGTCTAAAGTGAGATACAAATAAATTTGAAAAAAAAAAGTCAAGAAAATC
1 AAAAAAAAGAGTGAACGTCCAAAGTGAGATACAAATAAATTTGAAAAAAAAAAGTCAAGAAAATC
12161509 ATATTGA
66 ATATTGA
12161516 AAAAAAAAGAGTGAACGTCCAAAGTGAGATACAA
1 AAAAAAAAGAGTGAACGTCCAAAGTGAGATACAA
12161550 TTTTCTGAAG
Statistics
Matches: 143, Mismatches: 29, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
69 2 0.01
70 9 0.06
71 3 0.02
72 68 0.48
73 12 0.08
74 35 0.24
75 3 0.02
76 9 0.06
77 2 0.01
ACGTcount: A:0.54, C:0.08, G:0.17, T:0.21
Consensus pattern (72 bp):
AAAAAAAAGAGTGAACGTCCAAAGTGAGATACAAATAAATTTGAAAAAAAAAAGTCAAGAAAATC
ATATTGA
Found at i:12161545 original size:146 final size:147
Alignment explanation
Indices: 12161281--12161574 Score: 581
Period size: 146 Copynumber: 2.0 Consensus size: 147
12161271 AATCAACTTC
12161281 TGATATAGAATATCAGGAAAAAAAAGAGTGAACGTCTAAAGTGAGATACAAATAAATTTGAAAAA
1 TGATATAGAATATCAGGAAAAAAAAGAGTGAACGTCTAAAGTGAGATACAAATAAATTTGAAAAA
12161346 AAAAAGTCAAGAAAATCATATTGAAAAAAAAAGAGTGAACGTCCAAAGTGAGATACAATTTTCTG
66 AAAAAGTCAAGAAAATCATATTGAAAAAAAAAGAGTGAACGTCCAAAGTGAGATACAATTTTCTG
12161411 AAGTTAAT-AAGCTTTG
131 AAGTTAATAAAGCTTTG
12161427 TGATATAGAATATCAGGAAAAAAAAGAGTGAACGTCTAAAGTGAGATACAAATAAATTTGAAAAA
1 TGATATAGAATATCAGGAAAAAAAAGAGTGAACGTCTAAAGTGAGATACAAATAAATTTGAAAAA
12161492 AAAAAGTCAAGAAAATCATATTGAAAAAAAAAGAGTGAACGTCCAAAGTGAGATACAATTTTCTG
66 AAAAAGTCAAGAAAATCATATTGAAAAAAAAAGAGTGAACGTCCAAAGTGAGATACAATTTTCTG
12161557 AAGTTAATAAAGCTTTG
131 AAGTTAATAAAGCTTTG
12161574 T
1 T
12161575 TCAATTCTAA
Statistics
Matches: 147, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
146 138 0.94
147 9 0.06
ACGTcount: A:0.51, C:0.08, G:0.18, T:0.23
Consensus pattern (147 bp):
TGATATAGAATATCAGGAAAAAAAAGAGTGAACGTCTAAAGTGAGATACAAATAAATTTGAAAAA
AAAAAGTCAAGAAAATCATATTGAAAAAAAAAGAGTGAACGTCCAAAGTGAGATACAATTTTCTG
AAGTTAATAAAGCTTTG
Found at i:12164132 original size:31 final size:30
Alignment explanation
Indices: 12164095--12164152 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
12164085 CCCAAAATAT
12164095 AACTTTTAAAAATTTACACTTTTAGTCCTTC
1 AACTTTTAAAAATTTACAC-TTTAGTCCTTC
* *
12164126 AACTTTTACAACTTTACACTTTAGTCC
1 AACTTTTAAAAATTTACACTTTAGTCC
12164153 CCAAACTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.43
Consensus pattern (30 bp):
AACTTTTAAAAATTTACACTTTAGTCCTTC
Found at i:12164160 original size:30 final size:31
Alignment explanation
Indices: 12164095--12164173 Score: 90
Period size: 30 Copynumber: 2.6 Consensus size: 31
12164085 CCCAAAATAT
*
12164095 AACTTTTAAAAATTTACACTTTTAGTCCTTC
1 AACTTTTAAAAATTTACACTTTTAGTCCTCC
* *
12164126 AACTTTTACAACTTTACAC-TTTAGTCC-CC
1 AACTTTTAAAAATTTACACTTTTAGTCCTCC
* *
12164155 AAACTTTCAAAATTTTACA
1 -AACTTTTAAAAATTTACA
12164174 TTCCAATTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 1 0.02
30 23 0.56
31 17 0.41
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.41
Consensus pattern (31 bp):
AACTTTTAAAAATTTACACTTTTAGTCCTCC
Found at i:12165479 original size:2 final size:2
Alignment explanation
Indices: 12165472--12165498 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
12165462 CATATGTGAC
12165472 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
12165499 GAGTTGAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12167439 original size:34 final size:34
Alignment explanation
Indices: 12167400--12167465 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
12167390 ATAAAGTAGT
12167400 TTATTTT-TTAAATATTTCAA-ATTAAAAGATATTA
1 TTATTTTCTTAAA-A-TTCAATATTAAAAGATATTA
*
12167434 TTATTTTCTTAAAATTGAATATTAAAAGATAT
1 TTATTTTCTTAAAATTCAATATTAAAAGATAT
12167466 ATTGTTGGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 4 0.14
34 20 0.69
35 5 0.17
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (34 bp):
TTATTTTCTTAAAATTCAATATTAAAAGATATTA
Found at i:12170319 original size:23 final size:23
Alignment explanation
Indices: 12170289--12170335 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
12170279 GTACACACTC
12170289 AATTAATTGAGCATAAGAAAATA
1 AATTAATTGAGCATAAGAAAATA
12170312 AATTAATTGAGCATAAGAAAATA
1 AATTAATTGAGCATAAGAAAATA
12170335 A
1 A
12170336 GCTAAGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.13, T:0.26
Consensus pattern (23 bp):
AATTAATTGAGCATAAGAAAATA
Found at i:12180158 original size:55 final size:54
Alignment explanation
Indices: 12180072--12180186 Score: 221
Period size: 55 Copynumber: 2.1 Consensus size: 54
12180062 GGATGAATTG
12180072 ATAAACATATTGTTTGTCATTCTTGCATTAACCATGGTAACTTGTATTCTTAAA
1 ATAAACATATTGTTTGTCATTCTTGCATTAACCATGGTAACTTGTATTCTTAAA
12180126 ATGAAACATATTGTTTGTCATTCTTGCATTAACCATGGTAACTTGTATTCTTAAA
1 AT-AAACATATTGTTTGTCATTCTTGCATTAACCATGGTAACTTGTATTCTTAAA
12180181 ATAAAC
1 ATAAAC
12180187 TCAAAATTCA
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
54 6 0.10
55 54 0.90
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (54 bp):
ATAAACATATTGTTTGTCATTCTTGCATTAACCATGGTAACTTGTATTCTTAAA
Found at i:12180171 original size:28 final size:27
Alignment explanation
Indices: 12180085--12180177 Score: 80
Period size: 27 Copynumber: 3.4 Consensus size: 27
12180075 AACATATTGT
12180085 TTGTCATTCTTGCATTAACCATGGTAAC
1 TTGT-ATTCTTGCATTAACCATGGTAAC
** * * * ***
12180113 TTGTATTCTTAAAATGAAACAT-ATTGT
1 TTGTATTCTT-GCATTAACCATGGTAAC
12180140 TTGTCATTCTTGCATTAACCATGGTAAC
1 TTGT-ATTCTTGCATTAACCATGGTAAC
12180168 TTGTATTCTT
1 TTGTATTCTT
12180178 AAAATAAACT
Statistics
Matches: 46, Mismatches: 16, Indels: 7
0.67 0.23 0.10
Matches are distributed among these distances:
27 24 0.52
28 22 0.48
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (27 bp):
TTGTATTCTTGCATTAACCATGGTAAC
Found at i:12182556 original size:18 final size:17
Alignment explanation
Indices: 12182507--12182556 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 17
12182497 AACAATCAAC
12182507 CAACCTATTTTATGTTG
1 CAACCTATTTTATGTTG
*
12182524 ---CC-ATTTTAAGTTG
1 CAACCTATTTTATGTTG
12182537 CAACCTATTTTATGGTTG
1 CAACCTATTTTAT-GTTG
12182555 CA
1 CA
12182557 CCACATTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
13 10 0.38
14 2 0.08
16 2 0.08
17 6 0.23
18 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.44
Consensus pattern (17 bp):
CAACCTATTTTATGTTG
Found at i:12183865 original size:24 final size:24
Alignment explanation
Indices: 12183838--12183896 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
12183828 TATCTTACTG
* *
12183838 GTCATCGTGAACATCTCCATGCAC
1 GTCATCCTGAACATCACCATGCAC
*
12183862 GTCATCCTGAACATCACCGTGCAC
1 GTCATCCTGAACATCACCATGCAC
* *
12183886 ATAATCCTGAA
1 GTCATCCTGAA
12183897 TAGGATATGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (24 bp):
GTCATCCTGAACATCACCATGCAC
Found at i:12185221 original size:23 final size:21
Alignment explanation
Indices: 12185195--12185263 Score: 88
Period size: 21 Copynumber: 3.2 Consensus size: 21
12185185 GATGTTAAAA
12185195 GTGGATTAATGGATATAAGTTGT
1 GTGGATTAA--GATATAAGTTGT
12185218 GTGG-TATAAGATATAAGTTGT
1 GTGGAT-TAAGATATAAGTTGT
12185239 GTGGTATT-AGATATAAGTTGT
1 GTGG-ATTAAGATATAAGTTGT
12185260 GTGG
1 GTGG
12185264 TATAAGTGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
21 33 0.77
22 2 0.05
23 8 0.19
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (21 bp):
GTGGATTAAGATATAAGTTGT
Found at i:12185230 original size:21 final size:21
Alignment explanation
Indices: 12185206--12185269 Score: 119
Period size: 21 Copynumber: 3.0 Consensus size: 21
12185196 TGGATTAATG
12185206 GATATAAGTTGTGTGGTATAA
1 GATATAAGTTGTGTGGTATAA
*
12185227 GATATAAGTTGTGTGGTATTA
1 GATATAAGTTGTGTGGTATAA
12185248 GATATAAGTTGTGTGGTATAA
1 GATATAAGTTGTGTGGTATAA
12185269 G
1 G
12185270 TGTTATTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.31, C:0.00, G:0.30, T:0.39
Consensus pattern (21 bp):
GATATAAGTTGTGTGGTATAA
Found at i:12185910 original size:24 final size:24
Alignment explanation
Indices: 12185883--12185962 Score: 99
Period size: 24 Copynumber: 3.4 Consensus size: 24
12185873 GAGTCGAGGG
* *
12185883 TTCTATGCGATCCTTCGGGACAAA
1 TTCTATGTGGTCCTTCGGGACAAA
* *
12185907 TTCTATATGGTCCTTCGGGAAAAA
1 TTCTATGTGGTCCTTCGGGACAAA
*
12185931 TTCTACGTGGTCCTTCGGGACAAA
1 TTCTATGTGGTCCTTCGGGACAAA
*
12185955 -ACTATGTG
1 TTCTATGTG
12185963 ACACTTCGGT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 6 0.13
24 41 0.87
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (24 bp):
TTCTATGTGGTCCTTCGGGACAAA
Found at i:12208274 original size:404 final size:404
Alignment explanation
Indices: 12207525--12208306 Score: 1512
Period size: 404 Copynumber: 1.9 Consensus size: 404
12207515 TTCAGCTCAG
12207525 TTCAACTCTAGTCACATTCAATACTAAGAATTGGACGTTTGTTCAACAAACCAACCATGAAGACC
1 TTCAACTCTAGTCACATTCAATACTAAGAATTGGACGTTTGTTCAACAAACCAACCATGAAGACC
12207590 AAATTGAATGGAACGAAAGTACAACATGTATATGAAATTCAGTAACGTTTGAATTACTCTGGAAA
66 AAATTGAATGGAACGAAAGTACAACATGTATATGAAATTCAGTAACGTTTGAATTACTCTGGAAA
*
12207655 ATCTTGAAGTAACTAGAATAGACTTGAATGCTAAATGAACTAAGTAACCTCAAGGACTAAGGATT
131 ATCTTAAAGTAACTAGAATAGACTTGAATGCTAAATGAACTAAGTAACCTCAAGGACTAAGGATT
12207720 AAGTAAGTGATTTGGATGAGTCTGTAAACGTTAATGAACATACATGATGTAATGTTTTTATGGGT
196 AAGTAAGTGATTTGGATGAGTCTGTAAACGTTAATGAACATACATGATGTAATGTTTTTATGGGT
*
12207785 CATTAACCATAAATCAAGTACGTCTGTATTTTCTGATATCGTTGAAATGTGGAAATGAAATAAAG
261 CATTAACCATAAATCAAGTACGTCTGTATTTTCTGATATCATTGAAATGTGGAAATGAAATAAAG
*
12207850 ACCATAGGAAGACACATTCAACAATGATTACGGAGATGATTTATGTACAAGAATGAAATAAAGAC
326 ACCATAGGAAGACACATTCAACAATGATTACGAAGATGATTTATGTACAAGAATGAAATAAAGAC
12207915 CATAGGAAGACACA
391 CATAGGAAGACACA
12207929 TTCAACTCTAGTCACATTCAATACTAAGAATTGGACGTTTGTTCAACAAACCAACCATGAAGACC
1 TTCAACTCTAGTCACATTCAATACTAAGAATTGGACGTTTGTTCAACAAACCAACCATGAAGACC
*
12207994 AAATTGAATGGAACGAATA-TACAACATGTATATGAAATTCAGTAACGTTTGAATTACTTTGGAA
66 AAATTGAATGGAACGAA-AGTACAACATGTATATGAAATTCAGTAACGTTTGAATTACTCTGGAA
12208058 AATCTTAAAGTAACTAGAATAGACTTGAATGCTAAATGAACTAAGTAACCTCAAGGACTAAGGAT
130 AATCTTAAAGTAACTAGAATAGACTTGAATGCTAAATGAACTAAGTAACCTCAAGGACTAAGGAT
12208123 TAAGTAAGTGATTTGGATGAGTCTGTAAACGTTAATGAACATACATGATGTAATGTTTTTATGGG
195 TAAGTAAGTGATTTGGATGAGTCTGTAAACGTTAATGAACATACATGATGTAATGTTTTTATGGG
12208188 TCATTAACCATAAATCAAGTACGTCTGTATTTTCTGATATCATTGAAATGTGGAAATGAAATAAA
260 TCATTAACCATAAATCAAGTACGTCTGTATTTTCTGATATCATTGAAATGTGGAAATGAAATAAA
12208253 GACCATAGGAAGACACATTCAACAATGATTACGAAGATGATTTATGTACAAGAA
325 GACCATAGGAAGACACATTCAACAATGATTACGAAGATGATTTATGTACAAGAA
12208307 ATTGTTAGTA
Statistics
Matches: 373, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
404 372 1.00
405 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (404 bp):
TTCAACTCTAGTCACATTCAATACTAAGAATTGGACGTTTGTTCAACAAACCAACCATGAAGACC
AAATTGAATGGAACGAAAGTACAACATGTATATGAAATTCAGTAACGTTTGAATTACTCTGGAAA
ATCTTAAAGTAACTAGAATAGACTTGAATGCTAAATGAACTAAGTAACCTCAAGGACTAAGGATT
AAGTAAGTGATTTGGATGAGTCTGTAAACGTTAATGAACATACATGATGTAATGTTTTTATGGGT
CATTAACCATAAATCAAGTACGTCTGTATTTTCTGATATCATTGAAATGTGGAAATGAAATAAAG
ACCATAGGAAGACACATTCAACAATGATTACGAAGATGATTTATGTACAAGAATGAAATAAAGAC
CATAGGAAGACACA
Found at i:12215272 original size:14 final size:15
Alignment explanation
Indices: 12215248--12215281 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
12215238 AAATTTGGTC
*
12215248 TGTATATGTTTTGAT
1 TGTATATGTTTTAAT
12215263 TGTA-ATGTTTTAAT
1 TGTATATGTTTTAAT
12215277 TGTAT
1 TGTAT
12215282 TCTATTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.59
Consensus pattern (15 bp):
TGTATATGTTTTAAT
Found at i:12217297 original size:17 final size:17
Alignment explanation
Indices: 12217275--12217340 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 17
12217265 TATGGTTGCC
12217275 ATTTTAAGTTGCAACC-T
1 ATTTTAAGTTGC-ACCAT
* * *
12217292 ATTTTATGGTTACACCAC
1 ATTTTA-AGTTGCACCAT
12217310 ATTTTCAAGTTGCACCAT
1 ATTTT-AAGTTGCACCAT
*
12217328 ATTTTAGGTTGCA
1 ATTTTAAGTTGCA
12217341 ACTTCTTTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
17 16 0.41
18 22 0.56
19 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (17 bp):
ATTTTAAGTTGCACCAT
Found at i:12219521 original size:18 final size:19
Alignment explanation
Indices: 12219486--12219530 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
12219476 TCACATAATT
* *
12219486 CTAAAACCTTTATGAAA-C
1 CTAAAACCTCTATAAAACC
*
12219504 CTAAAACCTCTCTAAAACC
1 CTAAAACCTCTATAAAACC
12219523 CTAAAACC
1 CTAAAACC
12219531 CAAAATCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.22
Consensus pattern (19 bp):
CTAAAACCTCTATAAAACC
Found at i:12219535 original size:26 final size:26
Alignment explanation
Indices: 12219500--12219573 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
12219490 AACCTTTATG
* *
12219500 AAACCTAAAACCTCTCTAAAACCCTA
1 AAACCCAAAATCTCTCTAAAACCCTA
12219526 AAACCCAAAATCTCTCTAAAACCCTA
1 AAACCCAAAATCTCTCTAAAACCCTA
*
12219552 AAACTCAAAATCTCTCTAAAAC
1 AAACCCAAAATCTCTCTAAAAC
12219574 ATTCACCATG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.20
Consensus pattern (26 bp):
AAACCCAAAATCTCTCTAAAACCCTA
Found at i:12226216 original size:23 final size:23
Alignment explanation
Indices: 12226170--12226248 Score: 114
Period size: 23 Copynumber: 3.7 Consensus size: 23
12226160 AGGGATTAAC
12226170 AGTGGTCCTTCGGGACA--T-A-
1 AGTGGTCCTTCGGGACATTTCAT
*
12226189 A-TGGTCATTCGGGACATTTCAT
1 AGTGGTCCTTCGGGACATTTCAT
12226211 AGTGGTCCTTCGGGACATTTCAT
1 AGTGGTCCTTCGGGACATTTCAT
12226234 AGTGGTCCTTCGGGA
1 AGTGGTCCTTCGGGA
12226249 TAAATTCATA
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
18 14 0.26
19 1 0.02
20 1 0.02
21 1 0.02
22 1 0.02
23 35 0.66
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (23 bp):
AGTGGTCCTTCGGGACATTTCAT
Found at i:12227538 original size:2 final size:2
Alignment explanation
Indices: 12227531--12227584 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
12227521 AGAGTATAAG
12227531 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12227573 AT AT AT AT AT AT
1 AT AT AT AT AT AT
12227585 CTAAAGTCAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12228158 original size:16 final size:15
Alignment explanation
Indices: 12228133--12228162 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
12228123 TTTCGATTTT
12228133 TAATGAATAAAGAAA
1 TAATGAATAAAGAAA
12228148 TAATAGAATAAAGAA
1 TAAT-GAATAAAGAA
12228163 TGAAAAGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (15 bp):
TAATGAATAAAGAAA
Found at i:12229385 original size:21 final size:21
Alignment explanation
Indices: 12229361--12229408 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
12229351 TGTGTGCATC
*
12229361 GATGCATCTTCAATGTGTATT
1 GATGCAACTTCAATGTGTATT
12229382 GATGCAACTTCAATGTGTATT
1 GATGCAACTTCAATGTGTATT
12229403 GATGCA
1 GATGCA
12229409 CTCTCAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.38
Consensus pattern (21 bp):
GATGCAACTTCAATGTGTATT
Found at i:12229415 original size:21 final size:21
Alignment explanation
Indices: 12229361--12229415 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 21
12229351 TGTGTGCATC
12229361 GATGCA-TCTTCAATGTGTATT
1 GATGCACTC-TCAATGTGTATT
12229382 GATGCAACT-TCAATGTGTATT
1 GATGC-ACTCTCAATGTGTATT
12229403 GATGCACTCTCAA
1 GATGCACTCTCAA
12229416 ATAAATGAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.10
21 26 0.84
22 1 0.03
23 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (21 bp):
GATGCACTCTCAATGTGTATT
Found at i:12233954 original size:21 final size:21
Alignment explanation
Indices: 12233930--12233969 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12233920 TTTTTTTATA
* *
12233930 AAAATAGTTATTTATCTAAAT
1 AAAATAATTATTTAACTAAAT
12233951 AAAATAATTATTTAACTAA
1 AAAATAATTATTTAACTAA
12233970 TGTACAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (21 bp):
AAAATAATTATTTAACTAAAT
Found at i:12235272 original size:16 final size:16
Alignment explanation
Indices: 12235239--12235272 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
12235229 AACTAAAAAT
* *
12235239 ATTATAAATTATATTA
1 ATTATAAATTAAAGTA
12235255 ATTATAAATTAAAGTA
1 ATTATAAATTAAAGTA
12235271 AT
1 AT
12235273 AGTGTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
ATTATAAATTAAAGTA
Found at i:12235309 original size:89 final size:90
Alignment explanation
Indices: 12235144--12235312 Score: 202
Period size: 93 Copynumber: 1.9 Consensus size: 90
12235134 TATTCTTTTT
* * * *
12235144 AAAATATTAAAATAATTTATTTATTATTAAAATATTATTGTTATAATTATATTAATAAAAATATA
1 AAAATATTAAAATAATTTAATTATAATTAAAATAATAGTGTTATAATTATATTAATAAAAATATA
*
12235209 AACATTGGTATATTTTATTGAACTA
66 AACATTAGTATATTTTATTGAACTA
* * *
12235234 AAAATATTATAAATTATATTAATTATAAATTAAAGTAATAGTGTTAT-ATTATATT-TTAAAAAT
1 AAAATATTA-AAATAAT-TTAATTAT-AATTAAAATAATAGTGTTATAATTATATTAATAAAAAT
*
12235297 AT-TA-ATTAGTATATTT
63 ATAAACATTAGTATATTT
12235313 AAAATTATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
89 11 0.16
90 10 0.15
91 15 0.22
92 15 0.22
93 16 0.24
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.46
Consensus pattern (90 bp):
AAAATATTAAAATAATTTAATTATAATTAAAATAATAGTGTTATAATTATATTAATAAAAATATA
AACATTAGTATATTTTATTGAACTA
Found at i:12235475 original size:31 final size:29
Alignment explanation
Indices: 12235446--12235546 Score: 84
Period size: 29 Copynumber: 3.4 Consensus size: 29
12235436 ATTAATAATT
12235446 TATTATATATTATTAAAATAAAAATATAA
1 TATTATATATTATTAAAATAAAAATATAA
** * *
12235475 TATCT-TATATTA-TATTATTATAATATAA
1 TAT-TATATATTATTAAAATAAAAATATAA
12235503 TTGATTAT-T-TTATTATAAATTAAAAATATAA
1 -T-ATTATATATTATTA-AAA-TAAAAATATAA
12235534 TATTATATTATTA
1 TATTATA-TATTA
12235547 GAAATATTAA
Statistics
Matches: 54, Mismatches: 8, Indels: 17
0.68 0.10 0.22
Matches are distributed among these distances:
28 15 0.28
29 20 0.37
30 6 0.11
31 10 0.19
32 3 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (29 bp):
TATTATATATTATTAAAATAAAAATATAA
Found at i:12235558 original size:59 final size:58
Alignment explanation
Indices: 12235440--12235558 Score: 136
Period size: 59 Copynumber: 2.0 Consensus size: 58
12235430 AATTTTATTA
* ** *
12235440 ATAATTTATTATATATTATTAAAATAAAAATATAATATCTTATATTATATTATTATAAT
1 ATAATTGATTATATATTATTAAAATAAAAATATAATA-CTTATATTATAGAAATATAAT
12235499 ATAATTGATTAT-T-TTATTATAAATTAAAAATATAATA-TTATATTATTAGAAATATTAAT
1 ATAATTGATTATATATTATTA-AAA-TAAAAATATAATACTTATATTA-TAGAAATA-TAAT
12235558 A
1 A
12235559 AATATATTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
57 14 0.27
58 9 0.17
59 29 0.56
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (58 bp):
ATAATTGATTATATATTATTAAAATAAAAATATAATACTTATATTATAGAAATATAAT
Found at i:12235563 original size:22 final size:22
Alignment explanation
Indices: 12235521--12235563 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
12235511 TTTATTATAA
*
12235521 ATTAAAAATATAATATTATATT
1 ATTAAAAATATAATATAATATT
*
12235543 ATTAGAAATATTAATA-AATAT
1 ATTAAAAATA-TAATATAATAT
12235564 ATTTTAAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
ATTAAAAATATAATATAATATT
Found at i:12240443 original size:21 final size:22
Alignment explanation
Indices: 12240419--12240460 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
12240409 ACTATAGGAT
12240419 GGTATCGATA-CACTGTAGCAG
1 GGTATCGATACCACTGTAGCAG
*
12240440 GGTATCGATACCCCTGTAGCA
1 GGTATCGATACCACTGTAGCA
12240461 TTCGGGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (22 bp):
GGTATCGATACCACTGTAGCAG
Found at i:12241859 original size:40 final size:40
Alignment explanation
Indices: 12241815--12241896 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
12241805 AGATAAAGTA
12241815 GAGGGGATGGATGTTAATTGGAGAATATTAAAAGACCAAG
1 GAGGGGATGGATGTTAATTGGAGAATATTAAAAGACCAAG
*
12241855 GAGGGGATTGATGTTAATTGGAGAATATTAAAAGACCAAG
1 GAGGGGATGGATGTTAATTGGAGAATATTAAAAGACCAAG
12241895 GA
1 GA
12241897 ATGGAGAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.40, C:0.05, G:0.32, T:0.23
Consensus pattern (40 bp):
GAGGGGATGGATGTTAATTGGAGAATATTAAAAGACCAAG
Found at i:12244760 original size:14 final size:14
Alignment explanation
Indices: 12244741--12245383 Score: 1007
Period size: 14 Copynumber: 45.9 Consensus size: 14
12244731 GAACTATATT
*
12244741 TATGTTATATGTTA
1 TATGTTATATGTTG
*
12244755 TATGTTATATGTTA
1 TATGTTATATGTTG
*
12244769 TATGTTATATGTTA
1 TATGTTATATGTTG
*
12244783 TATGTTATATGTTA
1 TATGTTATATGTTG
*
12244797 TATGTTATATGTTA
1 TATGTTATATGTTG
*
12244811 TATGTTATATGTTA
1 TATGTTATATGTTG
*
12244825 TATGTTATATGTTA
1 TATGTTATATGTTG
12244839 TATGTTATATGTTG
1 TATGTTATATGTTG
12244853 TATGTTATATGTTG
1 TATGTTATATGTTG
12244867 TATGTTATATGTTG
1 TATGTTATATGTTG
12244881 TATGTTATATGTTG
1 TATGTTATATGTTG
12244895 TATGTTATATGTTG
1 TATGTTATATGTTG
12244909 TATGTTATATGTTG
1 TATGTTATATGTTG
12244923 TATGTTATATGTTG
1 TATGTTATATGTTG
12244937 TATGTTATATGTTG
1 TATGTTATATGTTG
12244951 TATGTTATATGTTG
1 TATGTTATATGTTG
12244965 TATGTTATATGTTG
1 TATGTTATATGTTG
12244979 TATGTTATATGTTG
1 TATGTTATATGTTG
*
12244993 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245007 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245021 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245035 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245049 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245063 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245077 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245091 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245105 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245119 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245133 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245147 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245161 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245175 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245189 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245203 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245217 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245231 TATGTTGTATGTTG
1 TATGTTATATGTTG
*
12245245 TATGTTGTATGTTG
1 TATGTTATATGTTG
12245259 TATGTTATATGTTG
1 TATGTTATATGTTG
12245273 TATGTTATATGTTG
1 TATGTTATATGTTG
*
12245287 TATGTTATATGTTA
1 TATGTTATATGTTG
12245301 TATGTTATATGTTG
1 TATGTTATATGTTG
12245315 TATGTTATATGTTG
1 TATGTTATATGTTG
*
12245329 TATGTTATATGTTA
1 TATGTTATATGTTG
* *
12245343 TATGTAATATGTTA
1 TATGTTATATGTTG
*
12245357 TATGTTATATGTTT
1 TATGTTATATGTTG
12245371 TATGTTATATGTT
1 TATGTTATATGTT
12245384 ATAAGTGATT
Statistics
Matches: 620, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
14 620 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (14 bp):
TATGTTATATGTTG
Found at i:12246025 original size:22 final size:22
Alignment explanation
Indices: 12246000--12246044 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
12245990 TCAGGACATT
12246000 TACAAAGGTCCTTCGAGACAAA
1 TACAAAGGTCCTTCGAGACAAA
* * *
12246022 TACATAGGTTCTTCGGGACAAA
1 TACAAAGGTCCTTCGAGACAAA
12246044 T
1 T
12246045 TTCATATGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (22 bp):
TACAAAGGTCCTTCGAGACAAA
Found at i:12259769 original size:344 final size:344
Alignment explanation
Indices: 12259142--12259832 Score: 1328
Period size: 344 Copynumber: 2.0 Consensus size: 344
12259132 TTCGAAAAAA
12259142 TTTATCTCATAATATTTCAAAAATTTTCATTTTACACATTGTGAAATTAGACCTGATTCTACCGA
1 TTTATCTCATAATATTTCAAAAATTTTCATTTTACACATTGTGAAATTAGACCTGATTCTACCGA
*
12259207 TATGGATTTTGGGAAGTTACATTCCAGCCATTAATTGTGTAGGGATAGAATCCAATCGGTCGGAT
66 CATGGATTTTGGGAAGTTACATTCCAGCCATTAATTGTGTAGGGATAGAATCCAATCGGTCGGAT
12259272 TTTCGGTCAACTCGACTTGACTTAAAAAATATTTATCTCTTATTTGAATTCGAATCGATCCGAAT
131 TTTCGGTCAACTCGACTTGACTTAAAAAATATTTATCTCTTATTTGAATTCGAATCGATCCGAAT
* *
12259337 ATTATATATCCTCCTTTGATGTGATATGATCTGACTCAAATTTTTAAAGTATAAATCTAATTTGA
196 ATTATATATCATCCTCTGATGTGATATGATCTGACTCAAATTTTTAAAGTATAAATCTAATTTGA
12259402 TTAAATATAAAATAAAGATTTAATTGAAAAATATTTTTAAAAAAATTATATTATTATCTTCGGCT
261 TTAAATATAAAATAAAGATTTAATTGAAAAATATTTTTAAAAAAATTATATTATTATCTTCGGCT
12259467 CGAGTTGGATTGATGATTT
326 CGAGTTGGATTGATGATTT
12259486 TTTATCTCATAATATTTCAAAAATTTTCATTTTACACATTGTGAAATTAGACCTGATTCTACCGA
1 TTTATCTCATAATATTTCAAAAATTTTCATTTTACACATTGTGAAATTAGACCTGATTCTACCGA
* * *
12259551 CATGGATTTTGGGAAGTTACATTCTAGCCATTAATTGTGTAGGGATGGAATCCAGTCGGTCGGAT
66 CATGGATTTTGGGAAGTTACATTCCAGCCATTAATTGTGTAGGGATAGAATCCAATCGGTCGGAT
12259616 TTTCGGTCAACTCGACTTGACTTAAAAAATATTTATCTCTTATTTGAATTCGAATCGATCCGAAT
131 TTTCGGTCAACTCGACTTGACTTAAAAAATATTTATCTCTTATTTGAATTCGAATCGATCCGAAT
12259681 ATTATATATCATCCTCTGATGTGATATGATCTGACTCAAATTTTTAAAGTATAAATCTAATTTGA
196 ATTATATATCATCCTCTGATGTGATATGATCTGACTCAAATTTTTAAAGTATAAATCTAATTTGA
12259746 TTAAATATAAAATAAAGATTTAATTGAAAAATATTTTTAAAAAAATTATATTATTATCTTCGGCT
261 TTAAATATAAAATAAAGATTTAATTGAAAAATATTTTTAAAAAAATTATATTATTATCTTCGGCT
12259811 CGAGTTGGATTGATGATTT
326 CGAGTTGGATTGATGATTT
12259830 TTT
1 TTT
12259833 TACCCTCTAC
Statistics
Matches: 341, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
344 341 1.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.40
Consensus pattern (344 bp):
TTTATCTCATAATATTTCAAAAATTTTCATTTTACACATTGTGAAATTAGACCTGATTCTACCGA
CATGGATTTTGGGAAGTTACATTCCAGCCATTAATTGTGTAGGGATAGAATCCAATCGGTCGGAT
TTTCGGTCAACTCGACTTGACTTAAAAAATATTTATCTCTTATTTGAATTCGAATCGATCCGAAT
ATTATATATCATCCTCTGATGTGATATGATCTGACTCAAATTTTTAAAGTATAAATCTAATTTGA
TTAAATATAAAATAAAGATTTAATTGAAAAATATTTTTAAAAAAATTATATTATTATCTTCGGCT
CGAGTTGGATTGATGATTT
Found at i:12260777 original size:28 final size:26
Alignment explanation
Indices: 12260719--12261303 Score: 103
Period size: 27 Copynumber: 22.3 Consensus size: 26
12260709 AAACAATTAT
12260719 AATATAT-ATATATATATATATATAA
1 AATATATAATATATATATATATATAA
*
12260744 ACTATATAATAATATATACTATATATAA
1 AATATATAAT-ATATATA-TATATATAA
* * *
12260772 AATATAT-ATATTATGTATAAACTATAT
1 AATATATAATA-TATATATATA-TATAA
* * *
12260799 AGTTTATTAATATA-AAATATATATAA
1 AATATA-TAATATATATATATATATAA
*
12260825 ACAT-TATAGTATATATATA-A-AGT-A
1 A-ATATATAATATATATATATATA-TAA
* * * *
12260849 TATATATTATATATAAACTATATAGT-T
1 AATATATAATATATATA-TATATA-TAA
* *
12260876 TATATAT-ATATATATATTATGTATAA
1 AATATATAATATATATA-TATATATAA
* * * *
12260902 ACTATATATACCATGTATAAAT-TATAGAGTT
1 A--ATATATA--ATATATATATATATATA--A
*
12260933 TATATATGAACTAT-TGA-ACTATATATAA
1 AATATAT-AA-TATAT-ATA-TATATATAA
* * *
12260961 ACTATATAGT-T-TGT-TA-ATATAA
1 AATATATAATATATATATATATATAA
* * *
12260983 ATTATATAGT-T-TATATATA-A-AT
1 AATATATAATATATATATATATATAA
* * *
12261005 TATATATCAAT-TATATTTAAATATATA
1 AATATAT-AATATATATATATATATA-A
* * * * *
12261032 CATCT-T-ATATTTATATATTATGTAT
1 AATATATAATATATATATA-TATATAA
*
12261057 AAT-TATAAATTATATATACTATGTATATA
1 AATATAT-AA-TATATATA-TATATATA-A
12261086 AA-ATATAATA-AT-TATATATATATA
1 AATATATAATATATATATATATATA-A
* * * *
12261110 AATATATACATATAAAGCAATAAATATAT
1 AATATATA-ATATATA--TATATATATAA
* *
12261139 AATATA-AGTACATATA-ATATAT-A
1 AATATATAATATATATATATATATAA
*
12261162 CATATATAATATA-A-AGTATA-AGT-A
1 AATATATAATATATATA-TATATA-TAA
* * *
12261186 GATATAT-ATATATATATAATAAAGTAT
1 AATATATAATATATATAT-ATATA-TAA
*
12261213 AATATATAA-ATATAAAGTATATATACA
1 AATATATAATATATATA-TATATATA-A
12261240 TATATATATAATATAAGTATATAATATATAA
1 -A-ATATATAATAT-A-TATAT-ATATATAA
12261271 AATATATAATATATA-A-AGTATATAA
1 AATATATAATATATATATA-TATATAA
12261296 ACATATAT
1 A-ATATAT
12261304 GTATAAAGTA
Statistics
Matches: 411, Mismatches: 79, Indels: 139
0.65 0.13 0.22
Matches are distributed among these distances:
22 25 0.06
23 22 0.05
24 56 0.14
25 49 0.12
26 55 0.13
27 67 0.16
28 50 0.12
29 49 0.12
30 18 0.04
31 10 0.02
32 10 0.02
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (26 bp):
AATATATAATATATATATATATATAA
Found at i:12260780 original size:20 final size:19
Alignment explanation
Indices: 12260720--12261329 Score: 197
Period size: 20 Copynumber: 30.8 Consensus size: 19
12260710 AACAATTATA
*
12260720 ATATATATATAT-ATATAT
1 ATATATATATATAAAATAT
*
12260738 ATATAAACTATATAATAATAT
1 ATATATA-TATATAA-AATAT
*
12260759 ATA-CTATATATAAAATAT
1 ATATATATATATAAAATAT
* *
12260777 ATATATTATGTATAAACTAT
1 ATATA-TATATATAAAATAT
12260797 ATAGT-T-TAT-T--AATAT
1 ATA-TATATATATAAAATAT
*
12260812 A-AAATATATATAAACAT-T
1 ATATATATATATAAA-ATAT
*
12260830 ATAGTATATATATAAAGTAT
1 ATA-TATATATATAAAATAT
*
12260850 ATATATTATATATAAACTAT
1 ATATA-TATATATAAAATAT
* *
12260870 ATAGTTTATATAT-ATATAT
1 ATA-TATATATATAAAATAT
* *
12260889 ATAT-TATGTATAAACTAT
1 ATATATATATATAAAATAT
* * *
12260907 ATATACCATGTATAAATTAT
1 ATATA-TATATATAAAATAT
* * * *
12260927 AGAGTTTATATATGAACTAT
1 ATA-TATATATATAAAATAT
*
12260947 -TGA-ACTATATATAAACTAT
1 AT-ATA-TATATATAAAATAT
* * *
12260966 ATAGTTTGTTAATATAAATTAT
1 ATA-TAT-AT-ATATAAAATAT
* *
12260988 ATAGTTTATATATAAATTAT
1 ATA-TATATATATAAAATAT
*
12261008 ATATCA-ATTATATTTAAATAT
1 ATAT-ATA-TATA-TAAAATAT
* * **
12261029 ATACATCT-TATATTTATAT
1 ATATATATATATA-AAATAT
*
12261048 ATTATGTATAATTATAAATTATAT
1 A-TATATAT-A-TATAAA--ATAT
*
12261072 ATACTATGTATATAAAATAT
1 ATA-TATATATATAAAATAT
12261092 AATAATTATATATATATAAATAT
1 -AT-A-TATATATATA-AAATAT
* * *
12261115 ATACATATA-A-AGCAATAA
1 ATATATATATATA-AAATAT
12261133 ATATATA-ATATAAGTACATAT
1 ATATATATATATAA--A-ATAT
* *
12261154 AATATATACATATATAATAT
1 -ATATATATATATAAAATAT
*
12261174 A-A-AGTATA-AGTAGATATAT
1 ATATA-TATATA-TA-AAATAT
*
12261193 ATATATATATAATAAAGTAT
1 ATATATATAT-ATAAAATAT
*
12261213 AATATATAAATATAAAGTATAT
1 -ATATATATATATAAA--ATAT
* *
12261235 ATACATATATATATAATAT
1 ATATATATATATAAAATAT
12261254 AAGTATATAATATATAAAATAT
1 -A-TATAT-ATATATAAAATAT
*
12261276 ATA-ATATATA-AAGTATATAA
1 ATATATATATATAA--A-ATAT
* * *
12261296 ACATATATGTATAAAGTAT
1 ATATATATATATAAAATAT
12261315 A-AGTATATATATAAA
1 ATA-TATATATATAAA
12261330 CTATGAAGTG
Statistics
Matches: 446, Mismatches: 77, Indels: 137
0.68 0.12 0.21
Matches are distributed among these distances:
14 2 0.00
15 8 0.02
16 1 0.00
17 12 0.03
18 53 0.12
19 78 0.17
20 143 0.32
21 63 0.14
22 60 0.13
23 18 0.04
24 8 0.02
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.41
Consensus pattern (19 bp):
ATATATATATATAAAATAT
Found at i:12260911 original size:11 final size:11
Alignment explanation
Indices: 12260725--12260872 Score: 72
Period size: 11 Copynumber: 14.5 Consensus size: 11
12260715 TTATAATATA
*
12260725 TATATATATA-
1 TATATATAAAC
12260735 TATATATAAAC
1 TATATATAAAC
12260746 --TATAT-AA-
1 TATATATAAAC
*
12260753 TA-ATATATAC
1 TATATATAAAC
12260763 TATATATAAA-
1 TATATATAAAC
* *
12260773 -ATATATATAT
1 TATATATAAAC
*
12260783 TATGTATAAAC
1 TATATATAAAC
** *
12260794 TATATAGTTTAT
1 TATATA-TAAAC
*
12260806 TA-ATATAAAA
1 TATATATAAAC
12260816 TATATATAAAC
1 TATATATAAAC
*
12260827 -AT-TATAGTA-
1 TATATATA-AAC
*
12260836 TATATATAAAG
1 TATATATAAAC
*
12260847 TATATAT--AT
1 TATATATAAAC
12260856 TATATATAAAC
1 TATATATAAAC
12260867 TATATA
1 TATATA
12260873 GTTTATATAT
Statistics
Matches: 103, Mismatches: 19, Indels: 31
0.67 0.12 0.20
Matches are distributed among these distances:
8 6 0.06
9 26 0.25
10 21 0.20
11 46 0.45
12 4 0.04
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (11 bp):
TATATATAAAC
Found at i:12261001 original size:11 final size:11
Alignment explanation
Indices: 12260977--12261031 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 11
12260967 TAGTTTGTTA
12260977 ATATAAATTAT
1 ATATAAATTAT
12260988 ATAGT---TTAT
1 ATA-TAAATTAT
12260997 ATATAAATTAT
1 ATATAAATTAT
*
12261008 ATATCAATTAT
1 ATATAAATTAT
*
12261019 ATTTAAA-TAT
1 ATATAAATTAT
12261029 ATA
1 ATA
12261032 CATCTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
8 1 0.03
9 7 0.19
10 5 0.14
11 22 0.61
12 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (11 bp):
ATATAAATTAT
Found at i:12261140 original size:82 final size:80
Alignment explanation
Indices: 12261054--12261327 Score: 244
Period size: 82 Copynumber: 3.4 Consensus size: 80
12261044 ATATATTATG
* * * *
12261054 TATAATTATAAATTATATATACTATGTATATAAAATATAATAATTATATATATATAAATATATAC
1 TATAATTATAAAGTATATATACTATATATATATAATATAATAA-TATATATATATAAATATATAT
12261119 ATATAAAGCAATAAATA
65 ATATAAAG-AATAAATA
* * * * *
12261136 TATAA-TAT-AAGTACATATAATATATACATATATAATATAA-AGTATAAGTAGATATATATATA
1 TATAATTATAAAGTATATATACTATAT--ATATATAATATAATAATAT-A-TATATATAAATATA
*
12261198 TATATAATAAAGTAT-AATA
62 TATAT-ATAAAGAATAAATA
*
12261217 TATAAATATAAAGTATATATAC-ATATATATATAATATAAGT-ATATA-ATATATAAAATATATA
1 TATAATTATAAAGTATATATACTATATATATATAATATAA-TAATATATATATAT-AAATATAT-
*
12261279 ATATATAAAGTATATAAACA
63 ATATATAAAG-A-ATAAATA
12261299 TAT-ATGTATAAAGTATA-AGTA-TATATATA
1 TATAAT-TATAAAGTATATA-TACTATATATA
12261328 AACTATGAAG
Statistics
Matches: 157, Mismatches: 18, Indels: 34
0.75 0.09 0.16
Matches are distributed among these distances:
78 5 0.03
79 13 0.08
80 34 0.22
81 21 0.13
82 68 0.43
83 16 0.10
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (80 bp):
TATAATTATAAAGTATATATACTATATATATATAATATAATAATATATATATATAAATATATATA
TATAAAGAATAAATA
Found at i:12261155 original size:15 final size:13
Alignment explanation
Indices: 12261135--12261285 Score: 76
Period size: 13 Copynumber: 11.9 Consensus size: 13
12261125 AGCAATAAAT
12261135 ATATAATATAAGTAC
1 ATATAATAT-A-TAC
12261150 ATATAATATATAC
1 ATATAATATATAC
*
12261163 ATAT-ATAATATAA
1 ATATAAT-ATATAC
* *
12261176 AGTATAAGTAGATAT
1 A-TATAA-TATATAC
12261191 ATATATATATATA-
1 ATATA-ATATATAC
*
12261204 ATA-AAGTATA-AT
1 ATATAA-TATATAC
12261216 ATATAA-ATATA-
1 ATATAATATATAC
12261227 A-AGT-ATATATAC
1 ATA-TAATATATAC
12261239 ATAT-ATATATA-
1 ATATAATATATAC
12261250 ATATAAGTATATA-
1 ATATAA-TATATAC
* *
12261263 ATAT-ATA-AAAT
1 ATATAATATATAC
12261274 ATATAATATATA
1 ATATAATATATA
12261286 AAGTATATAA
Statistics
Matches: 112, Mismatches: 6, Indels: 38
0.72 0.04 0.24
Matches are distributed among these distances:
10 4 0.04
11 22 0.20
12 25 0.22
13 31 0.28
14 13 0.12
15 16 0.14
16 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.38
Consensus pattern (13 bp):
ATATAATATATAC
Found at i:12261245 original size:130 final size:129
Alignment explanation
Indices: 12261100--12261446 Score: 291
Period size: 130 Copynumber: 2.6 Consensus size: 129
12261090 ATAATAATTA
* *
12261100 TATATATATAAATATATACATATAAAGCAATAAATATATAATATAAGTACATATAATATATACAT
1 TATATATACATATATATA-ATATAAAG-AATAAATATATAATATAAGTA-ATATAATATATACAT
*
12261165 ATATAATATAAAGTATAAGTAGATATATATA-TAT-ATA-T-AATAAAGTATAATA-TATAAATA
63 ATATAATATAAAGTATAAGTAGATATATAAACTATGA-AGTGAATAAA-TATAA-AGTATAAATA
*
12261225 TAAAG
125 TAAAC
* *
12261230 TATATATACATATATAT-ATAATATAAGTATATAATATATAAAATATA-TAATATATAAAGTATA
1 TATATATACATATATATAAT-ATA-AAGAATA-AATATATAATATA-AGT-A-ATAT-AA-TATA
* * * * * *
12261293 TAAACATATAT-GTATAAAGTATAAGTATATATATAAACTATGAAGTGTATATATATAAAGTTTT
58 T--ACATATATAATATAAAGTATAAGTAGATATATAAACTATGAAGTGAATAAATATAAAGTATA
*
12261357 AGTATAAAC
121 AATATAAAC
* * * * *
12261366 TATATATACATATATAATAATATAAAGTATAAGTATATAA-ATATGTAATATAAAATATTAAACT
1 TATATATACATATAT-ATAATATAAAGAATAAATATATAATATAAGTAATATAATATA-TACA-T
12261430 ATATAATAT-AAGTATAA
63 ATATAATATAAAGTATAA
12261447 AATATAAAAT
Statistics
Matches: 178, Mismatches: 19, Indels: 40
0.75 0.08 0.17
Matches are distributed among these distances:
128 2 0.01
129 8 0.04
130 47 0.26
131 12 0.07
132 6 0.03
133 6 0.03
134 27 0.15
135 21 0.12
136 38 0.21
137 9 0.05
138 2 0.01
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (129 bp):
TATATATACATATATATAATATAAAGAATAAATATATAATATAAGTAATATAATATATACATATA
TAATATAAAGTATAAGTAGATATATAAACTATGAAGTGAATAAATATAAAGTATAAATATAAAC
Found at i:12261286 original size:59 final size:59
Alignment explanation
Indices: 12261213--12261478 Score: 180
Period size: 59 Copynumber: 4.4 Consensus size: 59
12261203 AATAAAGTAT
*
12261213 AATATATAAATATAAAGTATATATACATATATATAT-AA-TATAAGTATATAATATATAA
1 AATATATAAATATAAAGTATATAAACATATATATATAAAGTATAAGTATAT-ATATATAA
*
12261271 AATATATAATATATAAAGTATATAAACATATATGTATAAAGTATAAGTATATATATAAACTATGA
1 AATATATAA-ATATAAAGTATATAAACATATATATATAAAGTATAAGTATATATAT--A-TA--A
* * * * * *
12261336 AGTGTATATATATAAAGTTTTAGTATAAAC-TATATATACATA-TATAA-TA-ATATAAAGTATA
1 AATATATAAATATAAAG---TA-TATAAACATATATATATAAAGTATAAGTATATATATA-TA-A
* * *
12261397 AGTATATAAATAT---GTAATATAAA-ATATTAAACTATATAA-TATAAGTATA-AAATATAA
1 AATATATAAATATAAAGT-ATATAAACATA-TATA-TATA-AAGTATAAGTATATATATATAA
12261454 AATAT-TAAATATTAAAGTATATAAA
1 AATATATAAATA-TAAAGTATATAAA
12261479 TATAGAATTA
Statistics
Matches: 166, Mismatches: 19, Indels: 45
0.72 0.08 0.20
Matches are distributed among these distances:
55 9 0.05
56 10 0.06
57 9 0.05
58 18 0.11
59 37 0.22
60 9 0.05
61 23 0.14
62 4 0.02
63 2 0.01
64 13 0.08
65 9 0.05
66 5 0.03
67 11 0.07
68 7 0.04
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (59 bp):
AATATATAAATATAAAGTATATAAACATATATATATAAAGTATAAGTATATATATATAA
Found at i:12261343 original size:20 final size:19
Alignment explanation
Indices: 12261299--12261347 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
12261289 TATATAAACA
* *
12261299 TATATGTATAAAGTATAAG
1 TATATATATAAACTATAAG
12261318 TATATATATAAACTATGAAG
1 TATATATATAAACTAT-AAG
*
12261338 TGTATATATA
1 TATATATATA
12261348 TAAAGTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (19 bp):
TATATATATAAACTATAAG
Found at i:12261347 original size:2 final size:2
Alignment explanation
Indices: 12260716--12261327 Score: 178
Period size: 2 Copynumber: 313.0 Consensus size: 2
12260706 TTGAAACAAT
*
12260716 TA TA -A TA TA TA TA TA TA TA TA TA TA TA AA CTA TA TA -A TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
* * *
12260756 TA TA TA CTA TA TA TA -A AA TA TA TA TA T- TA TG TA TA AA CTA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
* * * *
12260798 TA GTT TA T- TA -A TA TA -A AA TA TA TA TA AA CA T- TA TA GTA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
* * *
12260838 TA TA TA AA GTA TA TA TA T- TA TA TA TA AA CTA TA TA GTT TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA
* * * * *
12260880 TA TA TA TA TA TA T- TA TG TA TA AA CTA TA TA TA CCA TG TA TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA
* * *
12260923 T- TA TA GA GTT TA TA TA TGA -A CTA T- TGA -A CTA TA TA TA AA CTA
1 TA TA TA TA -TA TA TA TA T-A TA -TA TA T-A TA -TA TA TA TA TA -TA
* * * * *
12260965 TA TA GTT TG T- TA -A TA TA AA T- TA TA TA GTT TA TA TA TA AA T-
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * * * *
12261005 TA TA TA TCA -A T- TA TA TT TA AA TA TA TA CA TC T- TA TA TT TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
12261045 TA TA T- TA TG TA TA -A T- TA TA AA T- TA TA TA TA CTA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * *
12261084 TA -A AA TA TA -A TA -A T- TA TA TA TA TA TA AA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
12261122 TA AA GCA -A TA AA TA TA TA -A TA TA -A GTA CA TA TA -A TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
* * *
12261162 CA TA TA TA -A TA TA AA GTA TA -A GTA GA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * * *
12261204 -A TA AA GTA TA -A TA TA TA AA TA TA AA GTA TA TA TA CA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
*
12261246 TA TA -A TA TA -A GTA TA TA -A TA TA TA -A AA TA TA TA -A TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
12261284 TA AA GTA TA TA AA CA TA TA TG TA TA AA GTA TA -A GTA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA
12261326 TA
1 TA
12261328 AACTATGAAG
Statistics
Matches: 443, Mismatches: 93, Indels: 148
0.65 0.14 0.22
Matches are distributed among these distances:
1 44 0.10
2 368 0.83
3 31 0.07
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (2 bp):
TA
Found at i:12261403 original size:15 final size:14
Alignment explanation
Indices: 12261385--12261482 Score: 71
Period size: 13 Copynumber: 6.8 Consensus size: 14
12261375 ATATATAATA
12261385 ATATAAAGTATAAGT
1 ATATAAA-TATAAGT
12261400 ATATAAATAT--GT
1 ATATAAATATAAGT
*
12261412 AATATAAAATATTAAACT
1 -ATAT-AAATA-T-AAGT
12261430 ATAT-AATATAAGT
1 ATATAAATATAAGT
*
12261443 ATA-AAATATAA-A
1 ATATAAATATAAGT
12261455 ATATTAAATATTAAAGT
1 ATA-TAAATA-T-AAGT
12261472 ATATAAATATA
1 ATATAAATATA
12261483 GAATTATGTT
Statistics
Matches: 67, Mismatches: 4, Indels: 25
0.70 0.04 0.26
Matches are distributed among these distances:
12 5 0.07
13 17 0.25
14 15 0.22
15 14 0.21
16 8 0.12
17 7 0.10
18 1 0.01
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (14 bp):
ATATAAATATAAGT
Found at i:12261422 original size:7 final size:7
Alignment explanation
Indices: 12261377--12261482 Score: 72
Period size: 7 Copynumber: 14.7 Consensus size: 7
12261367 ATATATACAT
12261377 ATATAATA
1 ATATAA-A
12261385 ATATAAA
1 ATATAAA
*
12261392 GTAT-AA
1 ATATAAA
*
12261398 GTATATAA
1 ATATA-AA
**
12261406 ATATGTA
1 ATATAAA
12261413 ATATAAA
1 ATATAAA
12261420 ATATTAAA
1 ATA-TAAA
* *
12261428 CTATATA
1 ATATAAA
12261435 ATAT-AA
1 ATATAAA
*
12261441 GTATAAA
1 ATATAAA
12261448 ATATAAA
1 ATATAAA
*
12261455 ATATTAA
1 ATATAAA
12261462 ATATTAAA
1 ATA-TAAA
*
12261470 GTATATAA
1 ATATA-AA
12261478 ATATA
1 ATATA
12261483 GAATTATGTT
Statistics
Matches: 76, Mismatches: 16, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
6 10 0.13
7 38 0.50
8 28 0.37
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (7 bp):
ATATAAA
Found at i:12261458 original size:42 final size:44
Alignment explanation
Indices: 12261204--12261482 Score: 141
Period size: 42 Copynumber: 6.2 Consensus size: 44
12261194 TATATATATA
* * * *
12261204 ATAAAGTATAA-TATATAAATATAAAGTAT-ATATA-CATA-TAT
1 ATAAA-TATAAGTATATAAATATAAAATATAAAATATTAAACTAT
* *
12261245 ATATAATATAAGTATATAATATATAAAATATATAATATATAAAGTAT
1 ATA-AATATAAGTATATAA-ATATAAAATATAAAATAT-TAAACTAT
* * * * *
12261292 ATAAACATATATGTATA-AAGTATAAGTATATATATAAACTA-TGAAGTGT
1 AT-AA-ATATAAGTATATAAATATAA--A-ATATA-AAA-TATTAAACTAT
* * * *
12261341 ATATATATAAAGT-T-TTAGTATAAACTATATATACATA-TATAA-TAAT
1 ATAAATAT-AAGTATATAAATATAAA--ATATA-AAATATTA-AACT-AT
**
12261387 ATAAAGTATAAGTATATAAATATGTAATATAAAATATTAAACTAT
1 ATAAA-TATAAGTATATAAATATAAAATATAAAATATTAAACTAT
* *
12261432 AT-AATATAAGTATA-AAATATAAAATATTAAATATTAAAGTAT
1 ATAAATATAAGTATATAAATATAAAATATAAAATATTAAACTAT
12261474 ATAAATATA
1 ATAAATATA
12261483 GAATTATGTT
Statistics
Matches: 187, Mismatches: 26, Indels: 48
0.72 0.10 0.18
Matches are distributed among these distances:
41 8 0.04
42 35 0.19
43 26 0.14
44 5 0.03
45 15 0.08
46 35 0.19
47 24 0.13
48 22 0.12
49 13 0.07
50 2 0.01
51 2 0.01
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (44 bp):
ATAAATATAAGTATATAAATATAAAATATAAAATATTAAACTAT
Found at i:12262098 original size:17 final size:17
Alignment explanation
Indices: 12262076--12262109 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
12262066 ACTATTTAAG
12262076 ATGCAATGCAACATGAA
1 ATGCAATGCAACATGAA
*
12262093 ATGCAATTCAACATGAA
1 ATGCAATGCAACATGAA
12262110 TTAATATGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.18, G:0.15, T:0.21
Consensus pattern (17 bp):
ATGCAATGCAACATGAA
Found at i:12262745 original size:16 final size:16
Alignment explanation
Indices: 12262719--12262776 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
12262709 CATCAATGGT
12262719 AATAT-AAGTCAGGTA
1 AATATCAAGTCAGGTA
*
12262734 AATATCAAGTCAAGTA
1 AATATCAAGTCAGGTA
* *
12262750 AATGTC-AGATCAGGTC
1 AATATCAAG-TCAGGTA
*
12262766 AATAACAAGTC
1 AATATCAAGTC
12262777 GTATCATTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
15 7 0.21
16 25 0.74
17 2 0.06
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (16 bp):
AATATCAAGTCAGGTA
Found at i:12263562 original size:21 final size:23
Alignment explanation
Indices: 12263535--12263582 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
12263525 AATATATTTA
*
12263535 TAAAAATTTAAA-AAGATGAATT
1 TAAAATTTTAAATAAGATGAATT
*
12263557 TAAAATTTTTAAATAGGATGAATT
1 TAAAA-TTTTAAATAAGATGAATT
12263581 TA
1 TA
12263583 TAAAATTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 11 0.50
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (23 bp):
TAAAATTTTAAATAAGATGAATT
Found at i:12267361 original size:24 final size:24
Alignment explanation
Indices: 12267312--12267369 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
12267302 AATCTCTATC
*
12267312 CTTGTGACATG-CTTTTCTATGCT
1 CTTGTGACATGTATTTTCTATGCT
* * *
12267335 CTTGTGGCATGTATTTTCTCTGTT
1 CTTGTGACATGTATTTTCTATGCT
12267359 CTTGTGACATG
1 CTTGTGACATG
12267370 ATCCTTATGG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.12, C:0.19, G:0.21, T:0.48
Consensus pattern (24 bp):
CTTGTGACATGTATTTTCTATGCT
Found at i:12277085 original size:47 final size:47
Alignment explanation
Indices: 12277019--12277162 Score: 175
Period size: 47 Copynumber: 3.1 Consensus size: 47
12277009 CGTTAATTTC
* *
12277019 ATTTATGACATCCTTTCATGCCTTATTGCATCCGTTCATGCATTTTT
1 ATTTATGACATCCTTTCATGCCTTAATGCATCCATTCATGCATTTTT
* * *
12277066 ATTTATGGCATCATTTCATGCCTTAATGTATCCATTCATGCATTTTT
1 ATTTATGACATCCTTTCATGCCTTAATGCATCCATTCATGCATTTTT
* * * * *
12277113 AGTTATGACATCCTTTCAAGCCGATAATGCACCCA-T-ATGCATTATT
1 ATTTATGACATCCTTTCATGCC-TTAATGCATCCATTCATGCATTTTT
12277159 ATTT
1 ATTT
12277163 TGTTCATTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
46 12 0.15
47 61 0.74
48 9 0.11
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (47 bp):
ATTTATGACATCCTTTCATGCCTTAATGCATCCATTCATGCATTTTT
Found at i:12285153 original size:8 final size:8
Alignment explanation
Indices: 12285140--12285170 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
12285130 AGATTTTCGA
12285140 AGAAAAAG
1 AGAAAAAG
12285148 AGAAAAAG
1 AGAAAAAG
12285156 AGAAAAAG
1 AGAAAAAG
12285164 AGAAAAA
1 AGAAAAA
12285171 TAGTGACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (8 bp):
AGAAAAAG
Found at i:12286402 original size:17 final size:16
Alignment explanation
Indices: 12286333--12286404 Score: 63
Period size: 17 Copynumber: 4.2 Consensus size: 16
12286323 ATTCATGCAT
12286333 CTAGTTCATTGAATAAA
1 CTAGTTCATT-AATAAA
* *
12286350 GTTGGTTCATTAATTAAA
1 -CTAGTTCATTAA-TAAA
* *
12286368 GTAGTTCATTCATCAAA
1 CTAGTTCATTAAT-AAA
12286385 CTAGTTCATTTAATAAA
1 CTAGTTCA-TTAATAAA
12286402 CTA
1 CTA
12286405 ACTCTTAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
16 1 0.02
17 27 0.61
18 16 0.36
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (16 bp):
CTAGTTCATTAATAAA
Found at i:12292306 original size:48 final size:47
Alignment explanation
Indices: 12292230--12292341 Score: 145
Period size: 48 Copynumber: 2.4 Consensus size: 47
12292220 AATATTTCTT
12292230 GCTAGAGGTGCAT-GAAACCAACTCTAGTTGTTAAACATTCAAAGAATC
1 GCTAGAGGTGC-TCGAAACCAACTCTAGTTGTTAAACA-TCAAAGAATC
* * * *
12292278 GCTAAAGGTGCTCGAAACCAGCTCTAGTTGTTACACATCTAAGAATC
1 GCTAGAGGTGCTCGAAACCAACTCTAGTTGTTAAACATCAAAGAATC
* *
12292325 GCCAGAGGTGCCCGAAA
1 GCTAGAGGTGCTCGAAA
12292342 TTGGCTCTAG
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
47 24 0.43
48 32 0.57
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.22
Consensus pattern (47 bp):
GCTAGAGGTGCTCGAAACCAACTCTAGTTGTTAAACATCAAAGAATC
Found at i:12292352 original size:47 final size:48
Alignment explanation
Indices: 12292243--12292341 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 48
12292233 AGAGGTGCAT
* * *
12292243 GAAACCAACTCTAGTTGTTAAACATTCAAAGAATCGCTAAAGGTGCTC
1 GAAACCAGCTCTAGTTGTTAAACATTCAAAGAATCGCCAAAGGTGCCC
* * *
12292291 GAAACCAGCTCTAGTTGTTACACA-TCTAAGAATCGCCAGAGGTGCCC
1 GAAACCAGCTCTAGTTGTTAAACATTCAAAGAATCGCCAAAGGTGCCC
12292338 GAAA
1 GAAA
12292342 TTGGCTCTAG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
47 23 0.51
48 22 0.49
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.22
Consensus pattern (48 bp):
GAAACCAGCTCTAGTTGTTAAACATTCAAAGAATCGCCAAAGGTGCCC
Found at i:12298426 original size:17 final size:17
Alignment explanation
Indices: 12298406--12298447 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
12298396 ATGTACCAAC
*
12298406 CTTTTCACTATATTATT
1 CTTTTCACTATATCATT
*
12298423 CTTTTTC-CTATATCGTT
1 C-TTTTCACTATATCATT
12298440 CTTTTCAC
1 CTTTTCAC
12298448 CGTACCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
16 5 0.24
17 11 0.52
18 5 0.24
ACGTcount: A:0.17, C:0.24, G:0.02, T:0.57
Consensus pattern (17 bp):
CTTTTCACTATATCATT
Found at i:12300989 original size:39 final size:40
Alignment explanation
Indices: 12300927--12301005 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 40
12300917 GTGGGAGTTC
* * *
12300927 TGCATGTAGGGCTGGACGTGGGAA-TCATGGGGTGAGCAG
1 TGCATGAAGGGCTGGACGAGGGAATTCACGGGGTGAGCAG
*
12300966 TGCATGAAGGGCTGGA-GCAGGGAATTCACGTGGTGAGCAG
1 TGCATGAAGGGCTGGACG-AGGGAATTCACGGGGTGAGCAG
12301006 GGAATTCACG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.03
39 20 0.59
40 13 0.38
ACGTcount: A:0.23, C:0.14, G:0.44, T:0.19
Consensus pattern (40 bp):
TGCATGAAGGGCTGGACGAGGGAATTCACGGGGTGAGCAG
Found at i:12301003 original size:20 final size:20
Alignment explanation
Indices: 12300980--12301023 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
12300970 TGAAGGGCTG
*
12300980 GAGCAGGGAATTCACGTGGT
1 GAGCAGGGAATTCACGGGGT
12301000 GAGCAGGGAATTCACGGGGT
1 GAGCAGGGAATTCACGGGGT
12301020 GAGC
1 GAGC
12301024 TGATAAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.43, T:0.16
Consensus pattern (20 bp):
GAGCAGGGAATTCACGGGGT
Found at i:12301169 original size:32 final size:33
Alignment explanation
Indices: 12301083--12301173 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
12301073 ATTAAGTAGA
12301083 GGATGTCTCGGCGTCTTCTTCATAATTGGGGGC
1 GGATGTCTCGGCGTCTTCTTCATAATTGGGGGC
* * *
12301116 GGAATG-CTCGACGTTTTCTTCA-CA-TGGGAAGG-
1 GG-ATGTCTCGGCGTCTTCTTCATAATTGGG--GGC
12301148 GGATGTCTCGGCGTCTTCTTCATAAT
1 GGATGTCTCGGCGTCTTCTTCATAAT
12301174 AATGCATGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
31 7 0.15
32 17 0.37
33 19 0.41
34 3 0.07
ACGTcount: A:0.16, C:0.21, G:0.30, T:0.33
Consensus pattern (33 bp):
GGATGTCTCGGCGTCTTCTTCATAATTGGGGGC
Found at i:12301395 original size:13 final size:13
Alignment explanation
Indices: 12301377--12301402 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12301367 TTAAGGTTTA
12301377 GTGATTATATGTT
1 GTGATTATATGTT
12301390 GTGATTATATGTT
1 GTGATTATATGTT
12301403 ATTACATTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (13 bp):
GTGATTATATGTT
Found at i:12303814 original size:14 final size:14
Alignment explanation
Indices: 12303795--12304263 Score: 161
Period size: 14 Copynumber: 34.4 Consensus size: 14
12303785 TTTACTATTA
*
12303795 TTAAATTATTAAAG
1 TTAAATCATTAAAG
* *
12303809 TTAAATAATTATTA-
1 TTAAATCATTA-AAG
*
12303823 TTAAATTATTAAAG
1 TTAAATCATTAAAG
12303837 TTAAATCATTAAAG
1 TTAAATCATTAAAG
12303851 TTAAGTAATCATT--A-
1 TT-A--AATCATTAAAG
**
12303865 TGGAATCATTAAAG
1 TTAAATCATTAAAG
12303879 TTAAATCATTAAAG
1 TTAAATCATTAAAG
* * * *
12303893 TTAAGTAATGATTA-
1 TTAAATCATTA-AAG
* * *
12303907 TTAAATTATTTAAT
1 TTAAATCATTAAAG
*
12303921 TTAAATCATTAAAA
1 TTAAATCATTAAAG
* **
12303935 TTAAATAATTATTG
1 TTAAATCATTAAAG
12303949 TTAAAT-AGTTAAA-
1 TTAAATCA-TTAAAG
*
12303962 -T-AATTATT--A-
1 TTAAATCATTAAAG
12303971 TTAAATCATTAAAG
1 TTAAATCATTAAAG
* *
12303985 TTAAGTAATTAATTA-
1 TTAAATCATTAA--AG
*
12304000 TTAAAATTA-TAAAG
1 TT-AAATCATTAAAG
12304014 TTAAATCATTAAAG
1 TTAAATCATTAAAG
* * * *
12304028 TTAAGTAATGATTA-
1 TTAAATCATTA-AAG
* * *
12304042 TTAAATTATTTAAT
1 TTAAATCATTAAAG
12304056 TTAAATCATTAAAG
1 TTAAATCATTAAAG
*
12304070 TTAAATAATT--A-
1 TTAAATCATTAAAG
*
12304081 TT--ATGA--AATAG
1 TTAAATCATTAA-AG
*
12304092 TTAAA-CAATTATTA-
1 TTAAATC-ATTA-AAG
*
12304106 TTAAATCATTAATG
1 TTAAATCATTAAAG
12304120 TTAAATCATTAAAG
1 TTAAATCATTAAAG
* * *
12304134 TTAAGTAATTATTA-
1 TTAAATCATTA-AAG
12304148 TTAAATCATTAAAG
1 TTAAATCATTAAAG
12304162 TTAAATCATTAAAG
1 TTAAATCATTAAAG
* * * *
12304176 TTAAGTAATGATTA-
1 TTAAATCATTA-AAG
* * *
12304190 TTAAATTATTTAAT
1 TTAAATCATTAAAG
12304204 TTAAATCATTAAAG
1 TTAAATCATTAAAG
*
12304218 TT-AAT-AATAATTA-
1 TTAAATCATTAA--AG
* *
12304231 TTAAAT-TTTAAAT
1 TTAAATCATTAAAG
*
12304244 TTAAATCATTAAAT
1 TTAAATCATTAAAG
12304258 TTAAAT
1 TTAAAT
12304264 AATAATTATT
Statistics
Matches: 336, Mismatches: 74, Indels: 90
0.67 0.15 0.18
Matches are distributed among these distances:
9 4 0.01
10 2 0.01
11 22 0.07
12 8 0.02
13 27 0.08
14 246 0.73
15 15 0.04
16 5 0.01
17 7 0.02
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (14 bp):
TTAAATCATTAAAG
Found at i:12303842 original size:42 final size:42
Alignment explanation
Indices: 12303795--12304089 Score: 322
Period size: 42 Copynumber: 6.8 Consensus size: 42
12303785 TTTACTATTA
* *
12303795 TTAAATTATTAAAGTTAAATAATTATTATTAAATTATTAAAG
1 TTAAATCATTAAAGTTAAGTAATTATTATTAAATTATTAAAG
* ** *
12303837 TTAAATCATTAAAGTTAAGTAATCATTATGGAATCATTAAAG
1 TTAAATCATTAAAGTTAAGTAATTATTATTAAATTATTAAAG
* * *
12303879 TTAAATCATTAAAGTTAAGTAATGATTATTAAATTATTTAAT
1 TTAAATCATTAAAGTTAAGTAATTATTATTAAATTATTAAAG
* * * * *
12303921 TTAAATCATTAAAATTAAATAATTATTGTTAAATAGTTAAATAATTATTA
1 TTAAATCATTAAAGTTAAGTAATTATTATT-AA-A-TT-ATTAA--A--G
12303971 TTAAATCATTAAAGTTAAGTAATTAATTATTAAAATTA-TAAAG
1 TTAAATCATTAAAGTTAAGTAATT-ATTATT-AAATTATTAAAG
* * *
12304014 TTAAATCATTAAAGTTAAGTAATGATTATTAAATTATTTAAT
1 TTAAATCATTAAAGTTAAGTAATTATTATTAAATTATTAAAG
* *
12304056 TTAAATCATTAAAGTTAAATAATTATTATGAAAT
1 TTAAATCATTAAAGTTAAGTAATTATTATTAAAT
12304090 AGTTAAACAA
Statistics
Matches: 214, Mismatches: 29, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
41 6 0.03
42 138 0.64
43 25 0.12
44 1 0.00
45 3 0.01
46 3 0.01
47 3 0.01
48 2 0.01
49 2 0.01
50 23 0.11
51 8 0.04
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (42 bp):
TTAAATCATTAAAGTTAAGTAATTATTATTAAATTATTAAAG
Done.