Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 64 of 89
Found at i:15039381 original size:17 final size:17
Alignment explanation
Indices: 15039354--15039389 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
15039344 CCAGCACTCA
15039354 AAAAGAAGAAAAGCAAAG
1 AAAAGAAGAAAAG-AAAG
15039372 AAAA-AAGAAAAGAAAG
1 AAAAGAAGAAAAGAAAG
15039388 AA
1 AA
15039390 GTTGAAGCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 8 0.44
18 4 0.22
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAGAAGAAAAGAAAG
Found at i:15049188 original size:21 final size:21
Alignment explanation
Indices: 15049164--15049208 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
15049154 TATATTAATC
15049164 AAAATGGTCTGATTACAAATG
1 AAAATGGTCTGATTACAAATG
15049185 AAAATGGTCTGATTACAAATG
1 AAAATGGTCTGATTACAAATG
15049206 AAA
1 AAA
15049209 TATAATGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.09, G:0.18, T:0.27
Consensus pattern (21 bp):
AAAATGGTCTGATTACAAATG
Found at i:15052579 original size:14 final size:14
Alignment explanation
Indices: 15052560--15052599 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
15052550 TAAGATACTA
15052560 TTTCCATCACCATC
1 TTTCCATCACCATC
15052574 TTTCCATCACCATC
1 TTTCCATCACCATC
*
15052588 -CTCCATCACCAT
1 TTTCCATCACCAT
15052600 TCACGCCCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.23, C:0.45, G:0.00, T:0.33
Consensus pattern (14 bp):
TTTCCATCACCATC
Found at i:15053014 original size:20 final size:20
Alignment explanation
Indices: 15052989--15053026 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15052979 GTGCTGCAAC
15052989 AAAAAA-AAAAGAAAAAGAAG
1 AAAAAACAAAA-AAAAAGAAG
15053009 AAAAAACAAAAAAAAAGA
1 AAAAAACAAAAAAAAAGA
15053027 CTCCTACAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.87, C:0.03, G:0.11, T:0.00
Consensus pattern (20 bp):
AAAAAACAAAAAAAAAGAAG
Found at i:15055341 original size:83 final size:83
Alignment explanation
Indices: 15055250--15055411 Score: 252
Period size: 83 Copynumber: 2.0 Consensus size: 83
15055240 AACTGATGCG
** * ** *
15055250 AGAACAAATTCTTATTCTTCAAAGTGCTTGATTTGAGAATGCCTATTGAAAAAATGCAAGGTTGA
1 AGAACAAATGATTAATCTTCAAAGTGCTTGATTCAAGAATGCCTATTGAAAAAATGCAAGGTTAA
15055315 AGATGATTATTCTATCCT
66 AGATGATTATTCTATCCT
* *
15055333 AGAACAAATGATTAATCTTCAAAGTGCTTGATTCAAGAATGCCTGTTGAGAAAATGCAAGGTTAA
1 AGAACAAATGATTAATCTTCAAAGTGCTTGATTCAAGAATGCCTATTGAAAAAATGCAAGGTTAA
15055398 AGATGATTATTCTA
66 AGATGATTATTCTA
15055412 AATTTGAACA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 71 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (83 bp):
AGAACAAATGATTAATCTTCAAAGTGCTTGATTCAAGAATGCCTATTGAAAAAATGCAAGGTTAA
AGATGATTATTCTATCCT
Found at i:15055592 original size:45 final size:44
Alignment explanation
Indices: 15055516--15055609 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 44
15055506 TCCAAAAGAT
* *
15055516 GTGTCCATTGAGCAGCAAATGGACACAATTTTTCATTCAAATG-AC
1 GTGTCCATTGAACAGCAAAAGGACACAATTTTT-ATTCAAA-GAAC
* * *
15055561 GTGTCCATTGAACATCAAAAGGGCACCATTTTTATTCAAAGAAC
1 GTGTCCATTGAACAGCAAAAGGACACAATTTTTATTCAAAGAAC
15055605 GTGTC
1 GTGTC
15055610 TGTAGAAGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 14 0.33
45 28 0.65
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (44 bp):
GTGTCCATTGAACAGCAAAAGGACACAATTTTTATTCAAAGAAC
Found at i:15057136 original size:13 final size:13
Alignment explanation
Indices: 15057118--15057143 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15057108 AGATACTATT
15057118 TCCATCACCATTC
1 TCCATCACCATTC
15057131 TCCATCACCATTC
1 TCCATCACCATTC
15057144 ACGCCCATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.46, G:0.00, T:0.31
Consensus pattern (13 bp):
TCCATCACCATTC
Found at i:15061099 original size:25 final size:23
Alignment explanation
Indices: 15060991--15061104 Score: 79
Period size: 23 Copynumber: 4.8 Consensus size: 23
15060981 AAATTGTTTA
15060991 TGAGTGCTTCAACTTTCTTTCTTT
1 TGAGTGCTTCAA-TTTCTTTCTTT
** ** ** *
15061015 T-TCTTTTTCTTTTTCTTCCTTTT
1 TGAGTGCTTCAATTTCTTTC-TTT
*
15061038 TGAGTTCTTTCAATTTC-TTCTTT
1 TGAGTGC-TTCAATTTCTTTCTTT
**
15061061 TGAGTGCTGAAATTTTCTTTCTTT
1 TGAGTGCTTCAA-TTTCTTTCTTT
15061085 TGGAGTGCTTCAATTTCTTT
1 T-GAGTGCTTCAATTTCTTT
15061105 TATGATTTTT
Statistics
Matches: 66, Mismatches: 18, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
22 10 0.15
23 21 0.32
24 19 0.29
25 16 0.24
ACGTcount: A:0.11, C:0.18, G:0.11, T:0.60
Consensus pattern (23 bp):
TGAGTGCTTCAATTTCTTTCTTT
Found at i:15063887 original size:16 final size:18
Alignment explanation
Indices: 15063866--15063899 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15063856 ATTTATTTCA
15063866 TTTCA-TTCCTT-ATCTT
1 TTTCATTTCCTTAATCTT
15063882 TTTCATTTCCTTAATCTT
1 TTTCATTTCCTTAATCTT
15063900 CCTTTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 6 0.38
18 5 0.31
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTCATTTCCTTAATCTT
Found at i:15064167 original size:20 final size:20
Alignment explanation
Indices: 15064144--15064198 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
15064134 AATGGAGTGC
15064144 AAAAAGAA-AAAAGAAGACA
1 AAAAAGAAGAAAAGAAGACA
**
15064163 AAAAAGAAGAAAA-AATTCA
1 AAAAAGAAGAAAAGAAGACA
15064182 AAAAATGAAGAAAAGAA
1 AAAAA-GAAGAAAAGAA
15064199 AAGAAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 17 0.55
20 12 0.39
21 2 0.06
ACGTcount: A:0.76, C:0.04, G:0.15, T:0.05
Consensus pattern (20 bp):
AAAAAGAAGAAAAGAAGACA
Found at i:15064392 original size:24 final size:22
Alignment explanation
Indices: 15064350--15064395 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
15064340 AAGTCACCTC
15064350 TTCCTTTTTCAATCCTTTCATT
1 TTCCTTTTTCAATCCTTTCATT
15064372 TTCCTTGTCTTCAA-CCATTTCATT
1 TTCCTT-T-TTCAATCC-TTTCATT
15064396 CTTTTAATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.29
23 3 0.14
24 12 0.57
ACGTcount: A:0.15, C:0.28, G:0.02, T:0.54
Consensus pattern (22 bp):
TTCCTTTTTCAATCCTTTCATT
Found at i:15069194 original size:24 final size:23
Alignment explanation
Indices: 15069139--15069197 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 23
15069129 TTTGAGTTAT
15069139 TTCAATTTC-TTCTTTTGAGTGC
1 TTCAATTTCTTTCTTTTGAGTGC
**
15069161 TGAAATTTTCTTTCTTTTGGAGTGC
1 TTCAA-TTTCTTTCTTTT-GAGTGC
15069186 TTCAATTTCTTT
1 TTCAATTTCTTT
15069198 TATGATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 3 0.10
23 4 0.13
24 14 0.47
25 9 0.30
ACGTcount: A:0.15, C:0.15, G:0.14, T:0.56
Consensus pattern (23 bp):
TTCAATTTCTTTCTTTTGAGTGC
Found at i:15071980 original size:16 final size:18
Alignment explanation
Indices: 15071959--15071992 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15071949 ATTTATTTCA
15071959 TTTCA-TTCCTT-ATCTT
1 TTTCATTTCCTTAATCTT
15071975 TTTCATTTCCTTAATCTT
1 TTTCATTTCCTTAATCTT
15071993 CCTTTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 6 0.38
18 5 0.31
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTCATTTCCTTAATCTT
Found at i:15072259 original size:20 final size:20
Alignment explanation
Indices: 15072236--15072291 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
15072226 AAATGGAGTG
15072236 AAAAAAGAA-AAAAGAAGAC
1 AAAAAAGAAGAAAAGAAGAC
**
15072255 AAAAAAGAAGAAAA-AATTC
1 AAAAAAGAAGAAAAGAAGAC
15072274 AAAAAATGAAGAAAAGAA
1 AAAAAA-GAAGAAAAGAA
15072292 AAGAAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 18 0.56
20 12 0.38
21 2 0.06
ACGTcount: A:0.77, C:0.04, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAAAAGAAGAAAAGAAGAC
Found at i:15074643 original size:24 final size:24
Alignment explanation
Indices: 15074606--15074651 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15074596 ACTAAAGGAA
* *
15074606 GCGACTTTTCAAGAGCCAAGAGGT
1 GCGACTATTCAAGAGCAAAGAGGT
*
15074630 GCGACTATTGAAGAGCAAAGAG
1 GCGACTATTCAAGAGCAAAGAG
15074652 TGGTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.17
Consensus pattern (24 bp):
GCGACTATTCAAGAGCAAAGAGGT
Found at i:15081258 original size:23 final size:22
Alignment explanation
Indices: 15081232--15081276 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
15081222 TTTTAACCCA
15081232 AAAT-TAATTCCTAATAAAATAAT
1 AAATCTAA-TCCTAA-AAAATAAT
*
15081255 AAATCTAATCCTAAAAGATAAT
1 AAATCTAATCCTAAAAAATAAT
15081277 GCATCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 10 0.50
24 3 0.15
ACGTcount: A:0.56, C:0.11, G:0.02, T:0.31
Consensus pattern (22 bp):
AAATCTAATCCTAAAAAATAAT
Found at i:15084170 original size:23 final size:23
Alignment explanation
Indices: 15084139--15084182 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
15084129 TTGATGGAAG
* *
15084139 ATGGTGATGGTGTTGATGTTGAA
1 ATGGAGATGGTGGTGATGTTGAA
15084162 ATGGAGATGGTGGTGATGTTG
1 ATGGAGATGGTGGTGATGTTG
15084183 TATCTCAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.36
Consensus pattern (23 bp):
ATGGAGATGGTGGTGATGTTGAA
Found at i:15086049 original size:19 final size:20
Alignment explanation
Indices: 15086025--15086064 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
15086015 TATCCTTTCT
15086025 TTATTTCATTTCATT-CTTA
1 TTATTTCATTTCATTACTTA
*
15086044 TTATTTCTTTTCATTACTTA
1 TTATTTCATTTCATTACTTA
15086064 T
1 T
15086065 ATTATTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.20, C:0.15, G:0.00, T:0.65
Consensus pattern (20 bp):
TTATTTCATTTCATTACTTA
Found at i:15086343 original size:11 final size:10
Alignment explanation
Indices: 15086329--15086389 Score: 51
Period size: 11 Copynumber: 6.2 Consensus size: 10
15086319 AATAAAGAAA
15086329 AAGACAAAAAG
1 AAGA-AAAAAG
15086340 AAG-AAAAA-
1 AAGAAAAAAG
15086348 AAG-AAAAA-
1 AAGAAAAAAG
15086356 AAGAAGAAAAG
1 AAGAA-AAAAG
15086367 AAGAAAAGAAG
1 AAGAAAA-AAG
15086378 AA-AAGAAAAG
1 AAGAA-AAAAG
15086388 AA
1 AA
15086390 ATTCAAAAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
8 11 0.24
9 6 0.13
10 13 0.29
11 15 0.33
ACGTcount: A:0.79, C:0.02, G:0.20, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAG
Found at i:15086346 original size:8 final size:8
Alignment explanation
Indices: 15086340--15086384 Score: 72
Period size: 8 Copynumber: 5.6 Consensus size: 8
15086330 AGACAAAAAG
*
15086340 AAGAAAAA
1 AAGAAGAA
*
15086348 AAGAAAAA
1 AAGAAGAA
15086356 AAGAAGAA
1 AAGAAGAA
15086364 AAGAAGAA
1 AAGAAGAA
15086372 AAGAAGAA
1 AAGAAGAA
15086380 AAGAA
1 AAGAA
15086385 AAGAAATTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (8 bp):
AAGAAGAA
Found at i:15086348 original size:19 final size:18
Alignment explanation
Indices: 15086326--15086390 Score: 78
Period size: 19 Copynumber: 3.5 Consensus size: 18
15086316 AAAAATAAAG
15086326 AAAAAGACAAAAAGAAGAA
1 AAAAAGA-AAAAAGAAGAA
15086345 AAAAAGAAAAAAAGAAGAA
1 AAAAAG-AAAAAAGAAGAA
*
15086364 AAGAAGAAAAGAAGAA-AA
1 AAAAAGAAAA-AAGAAGAA
*
15086382 GAAAAGAAA
1 AAAAAGAAA
15086391 TTCAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
18 13 0.32
19 27 0.66
20 1 0.02
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAAGAAGAA
Found at i:15086354 original size:16 final size:16
Alignment explanation
Indices: 15086335--15086389 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
15086325 GAAAAAGACA
*
15086335 AAAAGAAGAAAAAAAG
1 AAAAGAAGAAGAAAAG
*
15086351 AAAAAAAGAAGAAAAG
1 AAAAGAAGAAGAAAAG
15086367 AAGAA-AAGAAGAAAAG
1 AA-AAGAAGAAGAAAAG
15086383 AAAAGAA
1 AAAAGAA
15086390 ATTCAAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 2 0.06
16 31 0.89
17 2 0.06
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (16 bp):
AAAAGAAGAAGAAAAG
Found at i:15086356 original size:27 final size:27
Alignment explanation
Indices: 15086326--15086390 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
15086316 AAAAATAAAG
15086326 AAAAAGACA-AAAAGAAGAAAAAAAGAA
1 AAAAAGA-AGAAAAGAAGAAAAAAAGAA
*
15086353 AAAAAGAAGAAAAGAAGAAAAGAAGAA
1 AAAAAGAAGAAAAGAAGAAAAAAAGAA
*
15086380 AAGAA-AAGAAA
1 AAAAAGAAGAAA
15086391 TTCAAAAGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
26 7 0.20
27 28 0.80
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (27 bp):
AAAAAGAAGAAAAGAAGAAAAAAAGAA
Found at i:15090022 original size:16 final size:16
Alignment explanation
Indices: 15089997--15090032 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
15089987 TGTGTCTCCT
15089997 TAAA-AAACATGGATG
1 TAAAGAAACATGGATG
15090012 TAAAGAAACATGGATG
1 TAAAGAAACATGGATG
15090028 TAAAG
1 TAAAG
15090033 CTAGTGAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.53, C:0.06, G:0.22, T:0.19
Consensus pattern (16 bp):
TAAAGAAACATGGATG
Found at i:15090078 original size:20 final size:21
Alignment explanation
Indices: 15090037--15090085 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
15090027 GTAAAGCTAG
*
15090037 TGAGCTAAAGTAAACATAACA
1 TGAGCTAAAATAAACATAACA
*
15090058 TGAGCTAAAAT-AACATTACA
1 TGAGCTAAAATAAACATAACA
15090078 TGAGCTAA
1 TGAGCTAA
15090086 TGAATGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.22
Consensus pattern (21 bp):
TGAGCTAAAATAAACATAACA
Found at i:15095405 original size:15 final size:15
Alignment explanation
Indices: 15095370--15095398 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15095360 GTGCTTTAAC
15095370 TTCTTT-CTTTTCTT
1 TTCTTTGCTTTTCTT
15095384 TTCTTTGCTTTTCTT
1 TTCTTTGCTTTTCTT
15095399 CTTTTTGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (15 bp):
TTCTTTGCTTTTCTT
Found at i:15107182 original size:13 final size:13
Alignment explanation
Indices: 15107164--15107197 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
15107154 GATGATGGTC
15107164 TTGATGAAGGATG
1 TTGATGAAGGATG
*
15107177 TTGATGATGGATG
1 TTGATGAAGGATG
*
15107190 ATGATGAA
1 TTGATGAA
15107198 ATGGCAATGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (13 bp):
TTGATGAAGGATG
Found at i:15111892 original size:11 final size:11
Alignment explanation
Indices: 15111876--15111927 Score: 61
Period size: 11 Copynumber: 4.7 Consensus size: 11
15111866 CTATTTTTTT
*
15111876 CAAAAAAAAAA
1 CAAAAAAAAAG
*
15111887 C-AAAAAAAGG
1 CAAAAAAAAAG
*
15111897 CAAAAAAAAGG
1 CAAAAAAAAAG
15111908 CACAAAAAAAAG
1 CA-AAAAAAAAG
15111920 CAAAAAAA
1 CAAAAAAA
15111928 GCCAAAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 8 0.22
11 18 0.50
12 10 0.28
ACGTcount: A:0.79, C:0.12, G:0.10, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAG
Found at i:15111933 original size:10 final size:11
Alignment explanation
Indices: 15111887--15111934 Score: 55
Period size: 10 Copynumber: 4.5 Consensus size: 11
15111877 AAAAAAAAAA
15111887 CAAAAAAAGGC
1 CAAAAAAAGGC
*
15111898 AAAAAAAAGGC
1 CAAAAAAAGGC
*
15111909 ACAAAAAAAAG-
1 -CAAAAAAAGGC
15111920 CAAAAAAA-GC
1 CAAAAAAAGGC
15111930 CAAAA
1 CAAAA
15111935 TTTCAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 1 0.03
10 13 0.41
11 10 0.31
12 8 0.25
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (11 bp):
CAAAAAAAGGC
Found at i:15130642 original size:21 final size:21
Alignment explanation
Indices: 15130616--15130656 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15130606 ATTAAAATAA
*
15130616 TTAAATTATAAAATAT-AAATT
1 TTAAATCAT-AAATATCAAATT
15130637 TTAAATCATAAATATCAAAT
1 TTAAATCATAAATATCAAAT
15130657 AATAATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (21 bp):
TTAAATCATAAATATCAAATT
Found at i:15130661 original size:14 final size:14
Alignment explanation
Indices: 15130594--15130661 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
15130584 AAAATCCTAA
15130594 ATAAAA-AAT-AAT
1 ATAAAATAATAAAT
15130606 ATTAAAATAATTAAATT
1 A-TAAAATAA-TAAA-T
15130623 ATAAAAT-ATAAAT
1 ATAAAATAATAAAT
* * *
15130636 TTTAAATCATAAAT
1 ATAAAATAATAAAT
*
15130650 ATCAAATAATAA
1 ATAAAATAATAA
15130662 TTCAATACCT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
12 1 0.02
13 11 0.24
14 21 0.47
15 2 0.04
16 8 0.18
17 2 0.04
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAAAATAATAAAT
Found at i:15131832 original size:3 final size:3
Alignment explanation
Indices: 15131824--15131854 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
15131814 ATAATTCCTA
15131824 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
15131855 TTCACTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:15133354 original size:20 final size:21
Alignment explanation
Indices: 15133331--15133374 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
15133321 AACTATTGTG
*
15133331 AAAGCATCGAAACTTTTA-TT
1 AAAGCATCGAAACTCTTACTT
**
15133351 AAAGTTTCGAAACTCTTACTT
1 AAAGCATCGAAACTCTTACTT
15133372 AAA
1 AAA
15133375 AAAATACGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (21 bp):
AAAGCATCGAAACTCTTACTT
Found at i:15148545 original size:32 final size:32
Alignment explanation
Indices: 15148504--15148569 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
15148494 AATCATTCAT
15148504 ATCCATTCATATGAAAACTATATTACTTAGTC
1 ATCCATTCATATGAAAACTATATTACTTAGTC
15148536 ATCCATTCATATGAAAACTATATTACTTAGTC
1 ATCCATTCATATGAAAACTATATTACTTAGTC
15148568 AT
1 AT
15148570 ATTACATGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (32 bp):
ATCCATTCATATGAAAACTATATTACTTAGTC
Found at i:15150473 original size:31 final size:31
Alignment explanation
Indices: 15150431--15150498 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
15150421 TAATTGAGAT
* *
15150431 ATTCATGCATGTCACATCTTTACTTAGCTTA
1 ATTCATACATGTCAAATCTTTACTTAGCTTA
15150462 ATTCATACATGTCAAATCTTTACTTAGCTTA
1 ATTCATACATGTCAAATCTTTACTTAGCTTA
15150493 ATTCAT
1 ATTCAT
15150499 GCATATGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (31 bp):
ATTCATACATGTCAAATCTTTACTTAGCTTA
Found at i:15158993 original size:27 final size:28
Alignment explanation
Indices: 15158949--15159002 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
15158939 GATGATGAAC
15158949 TTTTTCTCGCTGTTTTTTCCTCCTTTTG
1 TTTTTCTCGCTGTTTTTTCCTCCTTTTG
*
15158977 TTTTTCT-GCT-TTGTTTTCCTCTTTTT
1 TTTTTCTCGCTGTT-TTTTCCTCCTTTT
15159003 CATTTTTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 2 0.08
27 15 0.62
28 7 0.29
ACGTcount: A:0.00, C:0.22, G:0.09, T:0.69
Consensus pattern (28 bp):
TTTTTCTCGCTGTTTTTTCCTCCTTTTG
Found at i:15159008 original size:28 final size:28
Alignment explanation
Indices: 15158949--15159009 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
15158939 GATGATGAAC
*
15158949 TTTTTCTCGCTGTTTTTTCCTCCTTTTG
1 TTTTTCTCGCTGTTTTTTCCTCCTTTTA
*
15158977 TTTTTCT-GCT-TTGTTTTCCTCTTTTTCA
1 TTTTTCTCGCTGTT-TTTTCCTCCTTTT-A
15159005 TTTTT
1 TTTTT
15159010 GAGTTTCTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.07
27 15 0.52
28 12 0.41
ACGTcount: A:0.02, C:0.21, G:0.08, T:0.69
Consensus pattern (28 bp):
TTTTTCTCGCTGTTTTTTCCTCCTTTTA
Found at i:15161667 original size:20 final size:22
Alignment explanation
Indices: 15161622--15161668 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
15161612 TATCACCAAC
15161622 TTATTTATATATTCCATTGCCA
1 TTATTTATATATTCCATTGCCA
* *
15161644 -TATTTATCT-TTCCATT-TCA
1 TTATTTATATATTCCATTGCCA
15161663 TTATTT
1 TTATTT
15161669 CTATTTAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 12 0.55
21 8 0.36
ACGTcount: A:0.23, C:0.17, G:0.02, T:0.57
Consensus pattern (22 bp):
TTATTTATATATTCCATTGCCA
Found at i:15163836 original size:20 final size:20
Alignment explanation
Indices: 15163811--15163857 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
15163801 TGTTTTTCAT
15163811 ATTTTAAA-AGCTTTAAACAC
1 ATTTTAAACA-CTTTAAACAC
* *
15163831 ATTTTAAACACTTTAAGCAT
1 ATTTTAAACACTTTAAACAC
15163851 ATTTTAA
1 ATTTTAA
15163858 TTAACTCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (20 bp):
ATTTTAAACACTTTAAACAC
Found at i:15171422 original size:278 final size:272
Alignment explanation
Indices: 15170900--15171449 Score: 1030
Period size: 278 Copynumber: 2.0 Consensus size: 272
15170890 GAAACTAGTG
15170900 ACCTCTTTTTCTTTTGCCTCTTTCTCAGCTTTTTCTTTTTTTACTTTCTCTACCTCATCACAAAT
1 ACCTCTTTTTCTTTTGCCTCTTTCTCAGCTTTTTCTTTTTTTACTTTCTCTACCTCATCACAAAT
15170965 TATCATTTGATCTTTAGGGGTTGGAAGTCATTCTTTGCTGGTCGTTCTTTCTCCTTGTCAGGTTT
66 TATCATTTGATCTTTAGGGGTTGGAAGTCATTCTTTGCTGGTCGTTCTTTCTCCTTGTCAGGTTT
15171030 GTCATCTCTTGGCTTTTTCAGAGAAGATGAAGGATTTGAAGGATTACCTTGGTAAGAGGATGAAA
131 GTCATCTCTTGGCTTTTTCAGAGAAGATGAAGGATTTGAAGGATTACCTTGGTAAGAGGATGAAA
15171095 TACCTTGGTAATATTCTCTTAATCGGAATCTCCTTTGTATTTGTGTTTCGATTGTCATTGCTTTC
196 TACCTTGGTAATATTCTCTTAATCGGAATCTCCTTTGTATTTGTGTTTCGATTGTCATTGCTTTC
15171160 TTTAGTGTATCT
261 TTTAGTGTATCT
15171172 ACCTC-TTTTCTTTTGCCTCTTTCTCAGCTTTTTCTTTTTTTACTTTCTCTACCTCATCACAAAT
1 ACCTCTTTTTCTTTTGCCTCTTTCTCAGCTTTTTCTTTTTTTACTTTCTCTACCTCATCACAAAT
15171236 TATCATTTGATCTTTAGGGGTTGGAAGTGTGTCATTCTTTGCTGGTCGTTCTTTCTCCTTGTCAG
66 TATCATTTGATCTTTAGGGGTTGGAA----GTCATTCTTTGCTGGTCGTTCTTTCTCCTTGTCAG
15171301 GTTTGTCATCTCTTGGCTTTTTCAGAGAAGATGAGGAAGGATTTGAAGGATTACCTTGGTAAGAG
127 GTTTGTCATCTCTTGGCTTTTTCAGAGAAGAT---GAAGGATTTGAAGGATTACCTTGGTAAGAG
15171366 GATGAAATACCTTGGTAATATTCTCTTAATCGGAATCTCCTTTGTATTTGTGTTTCGATTGTCAT
189 GATGAAATACCTTGGTAATATTCTCTTAATCGGAATCTCCTTTGTATTTGTGTTTCGATTGTCAT
15171431 TGCTTTCTTTAGTGTATCT
254 TGCTTTCTTTAGTGTATCT
15171450 TCGAGGTTTT
Statistics
Matches: 271, Mismatches: 0, Indels: 8
0.97 0.00 0.03
Matches are distributed among these distances:
271 85 0.31
272 5 0.02
275 67 0.25
278 114 0.42
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.46
Consensus pattern (272 bp):
ACCTCTTTTTCTTTTGCCTCTTTCTCAGCTTTTTCTTTTTTTACTTTCTCTACCTCATCACAAAT
TATCATTTGATCTTTAGGGGTTGGAAGTCATTCTTTGCTGGTCGTTCTTTCTCCTTGTCAGGTTT
GTCATCTCTTGGCTTTTTCAGAGAAGATGAAGGATTTGAAGGATTACCTTGGTAAGAGGATGAAA
TACCTTGGTAATATTCTCTTAATCGGAATCTCCTTTGTATTTGTGTTTCGATTGTCATTGCTTTC
TTTAGTGTATCT
Found at i:15172962 original size:13 final size:13
Alignment explanation
Indices: 15172944--15172977 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
15172934 GAAATTTTGG
15172944 CTTTTTTTTTGCC
1 CTTTTTTTTTGCC
15172957 CTTTTTTTTTGCC
1 CTTTTTTTTTGCC
15172970 CTTTTTTT
1 CTTTTTTT
15172978 GGAAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.21, G:0.06, T:0.74
Consensus pattern (13 bp):
CTTTTTTTTTGCC
Found at i:15173786 original size:43 final size:48
Alignment explanation
Indices: 15173738--15173843 Score: 134
Period size: 50 Copynumber: 2.3 Consensus size: 48
15173728 ATAACTAAAG
15173738 AATAAAATAATAATAAACT-AAACA-TGTTTTAA-C-T-C-TAATTCCT
1 AATAAAATAATAAT-AACTAAAACATTGTTTTAACCATCCTTAATTCCT
*
15173781 AATAAAATAATAATAACTAAAAATATTGTTTTAACCCATCCTTAATTCCT
1 AATAAAATAATAATAACT-AAAACATTGTTTTAA-CCATCCTTAATTCCT
15173831 AATAAAATAATAA
1 AATAAAATAATAA
15173844 ATCCGATCCT
Statistics
Matches: 54, Mismatches: 1, Indels: 9
0.84 0.02 0.14
Matches are distributed among these distances:
42 4 0.07
43 14 0.26
44 4 0.07
45 8 0.15
47 1 0.02
48 1 0.02
49 1 0.02
50 21 0.39
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (48 bp):
AATAAAATAATAATAACTAAAACATTGTTTTAACCATCCTTAATTCCT
Found at i:15188063 original size:35 final size:35
Alignment explanation
Indices: 15188012--15188113 Score: 186
Period size: 35 Copynumber: 2.9 Consensus size: 35
15188002 CTGTTTCACA
* *
15188012 ACCAAAGGTAACGACGGAAGCAACATCAAATCATG
1 ACCAAAGGCAATGACGGAAGCAACATCAAATCATG
15188047 ACCAAAGGCAATGACGGAAGCAACATCAAATCATG
1 ACCAAAGGCAATGACGGAAGCAACATCAAATCATG
15188082 ACCAAAGGCAATGACGGAAGCAACATCAAATC
1 ACCAAAGGCAATGACGGAAGCAACATCAAATC
15188114 CTCCAAGGTA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.46, C:0.24, G:0.20, T:0.11
Consensus pattern (35 bp):
ACCAAAGGCAATGACGGAAGCAACATCAAATCATG
Found at i:15191622 original size:25 final size:27
Alignment explanation
Indices: 15191600--15191652 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
15191590 TAAAAAAACC
15191600 AGTAAA-TAATAA-AAAAAATAAAAAA
1 AGTAAATTAATAACAAAAAATAAAAAA
*
15191625 AGTAAATTTAATAACATAAAATAAAAAA
1 AGTAAA-TTAATAACAAAAAATAAAAAA
15191653 TAAAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
27 6 0.25
28 12 0.50
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.21
Consensus pattern (27 bp):
AGTAAATTAATAACAAAAAATAAAAAA
Found at i:15191786 original size:29 final size:29
Alignment explanation
Indices: 15191731--15191786 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
15191721 GAACATGTAA
* *
15191731 TAAGGGCTAAATTAAAACAAACCAAAATG
1 TAAGGGCTAAATCAAAACAAAACAAAATG
* * *
15191760 TAAGGGCTAAATCGAAATAAAATAAAA
1 TAAGGGCTAAATCAAAACAAAACAAAA
15191787 CTGACTAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.57, C:0.11, G:0.14, T:0.18
Consensus pattern (29 bp):
TAAGGGCTAAATCAAAACAAAACAAAATG
Found at i:15191888 original size:51 final size:51
Alignment explanation
Indices: 15191814--15191941 Score: 186
Period size: 51 Copynumber: 2.5 Consensus size: 51
15191804 AATATAAGTT
* * * *
15191814 AGTAACTAAATAAGAAA-TAAACAGTGACCAAAATGCAAAAATTAAAATAGC
1 AGTAGCTAAATCAGAAACT-AACAGTGACCAAAATACAAAAATTAAAATAAC
*
15191865 AGTAGCTAAATCAGAAACTAACAGTGACTAAAATACAAAAATTAAAATAAC
1 AGTAGCTAAATCAGAAACTAACAGTGACCAAAATACAAAAATTAAAATAAC
*
15191916 AGTAGCTAAATCGGAAACTAACAGTG
1 AGTAGCTAAATCAGAAACTAACAGTG
15191942 TATAAATTAA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
51 69 0.99
52 1 0.01
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.19
Consensus pattern (51 bp):
AGTAGCTAAATCAGAAACTAACAGTGACCAAAATACAAAAATTAAAATAAC
Found at i:15193457 original size:42 final size:42
Alignment explanation
Indices: 15193398--15193788 Score: 183
Period size: 42 Copynumber: 8.5 Consensus size: 42
15193388 ATGATGCTGA
15193398 TCCAACTCCGTATGTGATGGATGAGCCAAGTATTGGTGTTGT
1 TCCAACTCCGTATGTGATGGATGAGCCAAGTATTGGTGTTGT
*
15193440 TCCAACTCTGTATGTGATGGATGAGCCAAGTATTGGTGTTGT
1 TCCAACTCCGTATGTGATGGATGAGCCAAGTATTGGTGTTGT
* ** * * * *
15193482 TTCAACTCAATATGTGTTGAAATAGAG-CAAGAATGACAATGTTGATTATGTTGA
1 TCCAACTCCGTATGTGATG-GAT-GAGCCAAG--T----A--TTG---GTGTTGT
** *
15193536 TCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGT
1 TCCAACTCCGTATGTGATGGATGAGCCAAGTATTGGTGTTGT
* * *
15193578 TCCAACTACGTATGTGATGAAATCGAG-CAAGAATGACAATGTTGATGATGTTGA
1 TCCAACTCCGTATGTGATG-GAT-GAGCCAAG--T----A--TTG--G-TGTTGT
* * * * *
15193632 TCCAACTTCGCACGCGATGGATGAGCCAAGTATTGGTGATGT
1 TCCAACTCCGTATGTGATGGATGAGCCAAGTATTGGTGTTGT
* * * * *
15193674 TCCAACTCTGTATGTGATGGAATCGAGCATGAATGACAATGTTGATCATGT
1 TCCAACTCCGTATGTGATGG-AT-GAGC--CAA-G-TATTGGTG-T--TGT
* * *
15193725 GGATCCAACTTCTTATGTGATGGATGAGCCAAGTATTGGTGTTAT
1 ---TCCAACTCCGTATGTGATGGATGAGCCAAGTATTGGTGTTGT
15193770 TCCAACTCCGTATGTGATG
1 TCCAACTCCGTATGTGATG
15193789 AAATTGAGCA
Statistics
Matches: 258, Mismatches: 51, Indels: 80
0.66 0.13 0.21
Matches are distributed among these distances:
42 112 0.43
43 15 0.06
44 10 0.04
45 10 0.04
46 2 0.01
47 4 0.02
48 10 0.04
49 3 0.01
50 2 0.01
51 11 0.04
52 10 0.04
53 15 0.06
54 54 0.21
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
TCCAACTCCGTATGTGATGGATGAGCCAAGTATTGGTGTTGT
Found at i:15193599 original size:96 final size:96
Alignment explanation
Indices: 15193434--15193844 Score: 545
Period size: 96 Copynumber: 4.3 Consensus size: 96
15193424 CAAGTATTGG
* * * * * *
15193434 TGTTGTTCCAACTCTGTATGTGATGGATGAGCCAAGTATTGGTGTTGTTTCAACTCAATATGTGT
1 TGTTGATCCAACTCCGTATGCGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCAGTATGTGA
* *
15193499 TGAAATAGAGCAAGAATGACAATGTTGATTA
66 TGAAATCGAGCAAGAATGACAATGTTGATAA
* *
15193530 TGTTGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGTTCCAACT-ACGTATGTG
1 TGTTGATCCAACTCCGTATGCGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCA-GTATGTG
*
15193594 ATGAAATCGAGCAAGAATGACAATGTTGATGA
65 ATGAAATCGAGCAAGAATGACAATGTTGATAA
* * * * *
15193626 TGTTGATCCAACTTCGCACGCGATGGATGAGCCAAGTATTGGTGATGTTCCAACTCTGTATGTGA
1 TGTTGATCCAACTCCGTATGCGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCAGTATGTGA
* * *
15193691 TGGAATCGAGCATGAATGACAATGTTGATCA
66 TGAAATCGAGCAAGAATGACAATGTTGATAA
* * * * * *
15193722 TGTGGATCCAACTTCTTATGTGATGGATGAGCCAAGTATTGGTGTTATTCCAACTCCGTATGTGA
1 TGTTGATCCAACTCCGTATGCGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCAGTATGTGA
* *
15193787 TGAAATTGAGCAAGAATGACAATATTGATAA
66 TGAAATCGAGCAAGAATGACAATGTTGATAA
* *
15193818 TGTTGATCCAACTCCGTCTGTGATGGA
1 TGTTGATCCAACTCCGTATGCGATGGA
15193845 ATCGAGCAAG
Statistics
Matches: 277, Mismatches: 36, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
95 1 0.00
96 276 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (96 bp):
TGTTGATCCAACTCCGTATGCGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCAGTATGTGA
TGAAATCGAGCAAGAATGACAATGTTGATAA
Found at i:15193840 original size:54 final size:54
Alignment explanation
Indices: 15193770--15193986 Score: 199
Period size: 54 Copynumber: 4.2 Consensus size: 54
15193760 TTGGTGTTAT
* *
15193770 TCCAACTCCGTATGTGATGAAATTGAGCAAGAATGACAATATTGATAATGTTGA
1 TCCAACTCCGTATGTGATGAAATCGAGCAAGAATGACAATATTGATAACGTTGA
* * * *
15193824 TCCAACTCCGTCTGTGATGGAATCGAGCAAGAATGACAATGTTGATGACGTTGA
1 TCCAACTCCGTATGTGATGAAATCGAGCAAGAATGACAATATTGATAACGTTGA
* * * *
15193878 TCCAACTCCGTATGGGATG-GAT-GAGC--CAA-G----TATTGAT-GC-TCT--
1 TCCAACTCCGTATGTGATGAAATCGAGCAAGAATGACAATATTGATAACGT-TGA
* * * * *
15193920 TCCAACTCCGTATGTGATGGAATCGATCAAGAATGACAATGTTGATGATGTTGA
1 TCCAACTCCGTATGTGATGAAATCGAGCAAGAATGACAATATTGATAACGTTGA
15193974 TCCAACTCCGTAT
1 TCCAACTCCGTAT
15193987 ACGATGGATG
Statistics
Matches: 130, Mismatches: 19, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
42 18 0.14
43 3 0.02
44 5 0.04
45 6 0.05
46 2 0.02
47 1 0.01
49 1 0.01
50 2 0.02
51 6 0.05
52 5 0.04
53 3 0.02
54 78 0.60
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (54 bp):
TCCAACTCCGTATGTGATGAAATCGAGCAAGAATGACAATATTGATAACGTTGA
Found at i:15193976 original size:96 final size:96
Alignment explanation
Indices: 15193824--15194385 Score: 750
Period size: 96 Copynumber: 5.9 Consensus size: 96
15193814 ATAATGTTGA
* *
15193824 TCCAACTCCGTCTGTGATGGAATCGAGCAAGAATGACAATGTTGATGACGTTGATCCAACTCCGT
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGT
* * *
15193889 ATGGGATGGATGAGCCAAGTATTGATGCTCT
66 ATGCGATGGATGAGCCAAGTATTGGTGCTGT
*
15193920 TCCAACTCCGTATGTGATGGAATCGATCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGT
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGT
*
15193985 ATACGATGGATGAGCCAAGTATTGGTGCTGT
66 ATGCGATGGATGAGCCAAGTATTGGTGCTGT
* ** * * * * **
15194016 TTCAACTCCGTATGTGATAAAATCGAGCAAAAATGACAATGTTAATCATATTGATCCTAA-TTTG
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGATGTTGATCC-AACTCCG
* * * *
15194080 TATGTGATGGATGAGCTAATTATTGGTGTTGT
65 TATGCGATGGATGAGCCAAGTATTGGTGCTGT
* * *
15194112 TCCAACTCCGTATGTGATGGAATCGATCAAGAATGACAATGTTGATGATGCTGATCCAACTCCTT
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGT
* *
15194177 ATGCGATGTATGAGCCAAGTGTTGGT-CTTGT
66 ATGCGATGGATGAGCCAAGTATTGGTGC-TGT
* * * *
15194208 TCTAACTCTGTATGTGATGGATTCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCAT
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGT
* * *
15194273 ATGCGATGGATGAGCTAAGTATTGGTACTAT
66 ATGCGATGGATGAGCCAAGTATTGGTGCTGT
* * * * * *
15194304 TCCAACTCCGTATGTGATGGAATTGAGAAAGAATGACAATGTTAATTATGCTGATCCAACTCCAT
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGT
15194369 ATGCGATGGATGAGCCA
66 ATGCGATGGATGAGCCA
15194386 GAATGAACAA
Statistics
Matches: 403, Mismatches: 59, Indels: 8
0.86 0.13 0.02
Matches are distributed among these distances:
95 2 0.00
96 398 0.99
97 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (96 bp):
TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGT
ATGCGATGGATGAGCCAAGTATTGGTGCTGT
Found at i:15193976 original size:342 final size:337
Alignment explanation
Indices: 15193339--15194184 Score: 1077
Period size: 342 Copynumber: 2.5 Consensus size: 337
15193329 AGTGAGGTGT
* *
15193339 TGATGATTCAACTCTATATGTGATGAATCGAGCAAGAATGACAATGTTGATGATGCTGATCCAAC
1 TGATG-TTCAACTCTGTATGTGATGAATCGAGCAAGAATGACAATGTTGATCATG-TGATCCAAC
* * * *
15193404 TCCGTATGTGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCTGTATGTGATGGA-TGAGC--
64 TTCTTATGTGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCCGTATGTGATGAATTGAGCAA
* * * * * *
15193466 CAA-G----TATTG--GTGTTGTTTCAACTCAATATGTGTTGAAATAGAGCAAGAATGACAATGT
129 GAATGACAATATTGATATGTTGATCCAACTCCATATGTGATGAAATAGAGCAAGAATGACAATGT
* * * *
15193524 TGATTATGTTGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGTTCCAACTACGT
194 TGATGACGTTGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGATGCTCTTCCAACTACGT
* *
15193589 ATGTGATGAAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTTCGCACGCGATGGAT
259 ATGTGATGAAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGCACACGATGGAT
15193654 GAGCCAAGTATTGG
324 GAGCCAAGTATTGG
*
15193668 TGATGTTCCAACTCTGTATGTGATGGAATCGAGCATGAATGACAATGTTGATCATGTGGATCCAA
1 TGATGTT-CAACTCTGTATGTGAT-GAATCGAGCAAGAATGACAATGTTGATCATGT-GATCCAA
*
15193733 CTTCTTATGTGATGGATGAGCCAAGTATTGGTGTTATTCCAACTCCGTATGTGATGAAATTGAGC
63 CTTCTTATGTGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCCGTATGTGATG-AATTGAGC
* * * *
15193798 AAGAATGACAATATTGATAATGTTGATCCAACTCCGTCTGTGATGGAATCGAGCAAGAATGACAA
127 AAGAATGACAATATTGAT-ATGTTGATCCAACTCCATATGTGATGAAATAGAGCAAGAATGACAA
** *
15193863 TGTTGATGACGTTGATCCAACTCCGTATGGGATGGATGAGCCAAGTATTGATGCTCTTCCAACTC
191 TGTTGATGACGTTGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGATGCTCTTCCAACTA
* * * *
15193928 CGTATGTGATGGAATCGATCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGTATACGATG
256 CGTATGTGATGAAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGCACACGATG
15193993 GATGAGCCAAGTATTGG
321 GATGAGCCAAGTATTGG
* * * * * *
15194010 TGCTGTTTCAACTCCGTATGTGATAAAATCGAGCAAAAATGACAATGTTAATCATATTGATCCTA
1 TGATG-TTCAACTCTGTATGTGAT-GAATCGAGCAAGAATGACAATGTTGATCAT-GTGATCC-A
* * *
15194075 A-TT-TGTATGTGATGGATGAGCTAATTATTGGTGTTGTTCCAACTCCGTATGTGATGGAATCGA
62 ACTTCT-TATGTGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCCGTATGTGAT-GAATTGA
* * * * *
15194138 TCAAGAATGACAATGTTGATGATGCTGATCCAACTCCTTATGCGATG
125 GCAAGAATGACAATATTGAT-ATGTTGATCCAACTCCATATGTGATG
15194185 TATGAGCCAA
Statistics
Matches: 447, Mismatches: 50, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
328 2 0.00
329 21 0.05
330 88 0.20
331 1 0.00
332 5 0.01
334 2 0.00
335 1 0.00
339 5 0.01
341 1 0.00
342 315 0.70
343 6 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (337 bp):
TGATGTTCAACTCTGTATGTGATGAATCGAGCAAGAATGACAATGTTGATCATGTGATCCAACTT
CTTATGTGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCCGTATGTGATGAATTGAGCAAGA
ATGACAATATTGATATGTTGATCCAACTCCATATGTGATGAAATAGAGCAAGAATGACAATGTTG
ATGACGTTGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGATGCTCTTCCAACTACGTAT
GTGATGAAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGCACACGATGGATGA
GCCAAGTATTGG
Found at i:15193994 original size:150 final size:150
Alignment explanation
Indices: 15193674--15193986 Score: 473
Period size: 150 Copynumber: 2.1 Consensus size: 150
15193664 TTGGTGATGT
* * * * *
15193674 TCCAACTCTGTATGTGATGGAATCGAGCATGAATGACAATGTTGATCATGTGGATCCAACTTCTT
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATCACGTGGATCCAACTCCGT
* * * *
15193739 ATGTGATGGATGAGCCAAGTATTGGTGTTATTCCAACTCCGTATGTGATGAAATTGAGCAAGAAT
66 ATGGGATGGATGAGCCAAGTATTGATGCTATTCCAACTCCGTATGTGATGAAATCGAGCAAGAAT
15193804 GACAATATTGATAATGTTGA
131 GACAATATTGATAATGTTGA
* * *
15193824 TCCAACTCCGTCTGTGATGGAATCGAGCAAGAATGACAATGTTGATGACGTTGATCCAACTCCGT
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATCACGTGGATCCAACTCCGT
* * *
15193889 ATGGGATGGATGAGCCAAGTATTGATGCTCTTCCAACTCCGTATGTGATGGAATCGATCAAGAAT
66 ATGGGATGGATGAGCCAAGTATTGATGCTATTCCAACTCCGTATGTGATGAAATCGAGCAAGAAT
* *
15193954 GACAATGTTGATGATGTTGA
131 GACAATATTGATAATGTTGA
15193974 TCCAACTCCGTAT
1 TCCAACTCCGTAT
15193987 ACGATGGATG
Statistics
Matches: 145, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
150 145 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (150 bp):
TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATCACGTGGATCCAACTCCGT
ATGGGATGGATGAGCCAAGTATTGATGCTATTCCAACTCCGTATGTGATGAAATCGAGCAAGAAT
GACAATATTGATAATGTTGA
Found at i:15194088 original size:246 final size:246
Alignment explanation
Indices: 15193578--15194090 Score: 722
Period size: 246 Copynumber: 2.1 Consensus size: 246
15193568 TTGGTGCTGT
* * * *
15193578 TCCAACTACGTATGTGATGAAATCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTTCGC
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGACGTTGATCCAACTCCGC
* * * *
15193643 ACGCGATGGATGAGCCAAGTATTGGTGATGTTCCAACTCTGTATGTGATGGAATCGAGCATGAAT
66 ACGCGATGGATGAGCCAAGTATTGATGATCTTCCAACTCCGTATGTGATGGAATCGAGCAAGAAT
* * ** *
15193708 GACAATGTTGATCATGTGGATCCAACTTCTTATGTGATGGATGAGCCAAGTATTGGTGTTATTCC
131 GACAATGTTGATCATGTGGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTATTCC
* * * * *
15193773 AACTCCGTATGTGATGAAATTGAGCAAGAATGACAATATTGATAATGTTGA
196 AACTCCGTATGTGATAAAATCGAGCAAAAATGACAATATTAATAATATTGA
* *
15193824 TCCAACTCCGTCTGTGATGGAATCGAGCAAGAATGACAATGTTGATGACGTTGATCCAACTCCGT
1 TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGACGTTGATCCAACTCCGC
* * * *
15193889 ATGGGATGGATGAGCCAAGTATTGATGCTCTTCCAACTCCGTATGTGATGGAATCGATCAAGAAT
66 ACGCGATGGATGAGCCAAGTATTGATGATCTTCCAACTCCGTATGTGATGGAATCGAGCAAGAAT
* * * *
15193954 GACAATGTTGATGATGTTGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGTTTC
131 GACAATGTTGATCATGTGGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTATTCC
* *
15194019 AACTCCGTATGTGATAAAATCGAGCAAAAATGACAATGTTAATCATATTGA
196 AACTCCGTATGTGATAAAATCGAGCAAAAATGACAATATTAATAATATTGA
**
15194070 TCCTAA-TTTGTATGTGATGGA
1 TCC-AACTCCGTATGTGATGGA
15194091 TGAGCTAATT
Statistics
Matches: 233, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
246 231 0.99
247 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (246 bp):
TCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATGACGTTGATCCAACTCCGC
ACGCGATGGATGAGCCAAGTATTGATGATCTTCCAACTCCGTATGTGATGGAATCGAGCAAGAAT
GACAATGTTGATCATGTGGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTATTCC
AACTCCGTATGTGATAAAATCGAGCAAAAATGACAATATTAATAATATTGA
Found at i:15194261 original size:438 final size:426
Alignment explanation
Indices: 15193347--15194324 Score: 1266
Period size: 438 Copynumber: 2.3 Consensus size: 426
15193337 GTTGATGATT
* * *
15193347 CAACTCTATATGTGAT-GAATCGAGCAAGAATGACAATGTTGATGATGCTGATCCAACTCCGTAT
1 CAACTCTGTATGTGATGGATTCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGTAT
* * * * *
15193411 GTGATGGATGAGCCAAGTATTGGTGTTGTTCCAACTCTGTATGTGATGGATGAGCCAAGTATTGG
66 GTGATGGATGAGCCAAGTATTGGCGTTGATCCAACTCCGTATGGGATGGATGAGCCAAGTATTGA
* * * * *
15193476 TGTTGTTTCAACTCAATATGTGTTGAAATAGAGCAAGAATGACAATGTTGATTATGTTGATCCAA
131 TGCTCTTCCAACTCAATATGTGATGAAATAGAGCAAGAATGACAATGTTGATGATGTTGATCCAA
*
15193541 CTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGTTCCAACTACGTATGTGATGAAATCGAGC
196 CTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGTTCCAACTACGTATGTGATAAAATCGAGC
* * * *
15193606 AAGAATGACAATGTTGATGATGTTGATCCAACTTCGCACGCGATGGATGAGCCAAGTATTGGTGA
261 AAAAATGACAATGTTAATCATATTGATCCAACTTCGCACGCGATGGATGAGCCAAGTATTGGTGA
* * *
15193671 TGTTCCAACTCTGTATGTGATGGAATCGAGCATGAATGACAATGTTGATCATGTGGATCCAACTT
326 TGTTCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATCATGTGGATCCAACTC
* *
15193736 CTTATGTGATGGATGAGCCAAGTATTGGTGTTATTC
391 CTTATGCGATGGATGAGCCAAGTATTGGTCTTATTC
* * * * *
15193772 CAACTCCGTATGTGATGAAATT-GAGCAAGAATGACAATATTGATAATGTTGATCCAACTCCGTC
1 CAACTCTGTATGTGATG-GATTCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGTA
15193836 TGTGATGGAATCGAG-CAAGAATGACAATGTTGATGACGTTGATCCAACTCCGTATGGGATGGAT
65 TGTGATGG-AT-GAGCCAAG--T----A--TTG--G-CGTTGATCCAACTCCGTATGGGATGGAT
** * * *
15193900 GAGCCAAGTATTGATGCTCTTCCAACTCCGTATGTGATGGAATCGATCAAGAATGACAATGTTGA
117 GAGCCAAGTATTGATGCTCTTCCAACTCAATATGTGATGAAATAGAGCAAGAATGACAATGTTGA
* *
15193965 TGATGTTGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGTTTCAACTCCGTATG
182 TGATGTTGATCCAACTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGTTCCAACTACGTATG
* * * *
15194030 TGATAAAATCGAGCAAAAATGACAATGTTAATCATATTGATCCTAA-TTTGTATGTGATGGATGA
247 TGATAAAATCGAGCAAAAATGACAATGTTAATCATATTGATCC-AACTTCGCACGCGATGGATGA
* * * * *
15194094 GCTAATTATTGGTGTTGTTCCAACTCCGTATGTGATGGAATCGATCAAGAATGACAATGTTGATG
311 GCCAAGTATTGGTGATGTTCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATC
* * *
15194159 ATGCT-GATCCAACTCCTTATGCGATGTATGAGCCAAGTGTTGGTCTTGTTC
376 ATG-TGGATCCAACTCCTTATGCGATGGATGAGCCAAGTATTGGTCTTATTC
* *
15194210 TAACTCTGTATGTGATGGATTCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCATAT
1 CAACTCTGTATGTGATGGATTCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGTAT
* * *** *
15194275 GCGATGGATGAGCTAAGTATTGGTACT-ATTCCAACTCCGTATGTGATGGA
66 GTGATGGATGAGCCAAGTATTGGCGTTGA-TCCAACTCCGTATGGGATGGA
15194325 ATTGAGAAAG
Statistics
Matches: 473, Mismatches: 60, Indels: 39
0.83 0.10 0.07
Matches are distributed among these distances:
425 15 0.03
426 67 0.14
427 9 0.02
428 3 0.01
429 4 0.01
431 1 0.00
433 1 0.00
435 4 0.01
436 3 0.01
437 9 0.02
438 354 0.75
439 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (426 bp):
CAACTCTGTATGTGATGGATTCGAGCAAGAATGACAATGTTGATGATGTTGATCCAACTCCGTAT
GTGATGGATGAGCCAAGTATTGGCGTTGATCCAACTCCGTATGGGATGGATGAGCCAAGTATTGA
TGCTCTTCCAACTCAATATGTGATGAAATAGAGCAAGAATGACAATGTTGATGATGTTGATCCAA
CTCCGTATACGATGGATGAGCCAAGTATTGGTGCTGTTCCAACTACGTATGTGATAAAATCGAGC
AAAAATGACAATGTTAATCATATTGATCCAACTTCGCACGCGATGGATGAGCCAAGTATTGGTGA
TGTTCCAACTCCGTATGTGATGGAATCGAGCAAGAATGACAATGTTGATCATGTGGATCCAACTC
CTTATGCGATGGATGAGCCAAGTATTGGTCTTATTC
Found at i:15195075 original size:73 final size:73
Alignment explanation
Indices: 15194692--15195102 Score: 334
Period size: 74 Copynumber: 5.6 Consensus size: 73
15194682 AAATGAATAA
* * * *
15194692 GAAACTTGTTTTAAGAGAAGC--TCTCACGAGTGAGATAAATTT-TGTTTCGAAGGAAAACTGTC
1 GAAACTTGTTTTAAGAAAAACAATCTCA--AGTGAGATAAATTTCTGTTTC-AAGGGAAATTGTC
***
15194754 TTTTGTGAGAC
63 TCCAGTGAGAC
* * * * * * * * *
15194765 G-AAGTTGGTTTTAGGAAAAAACCATCTCAAGTGAAATAGATTT-TGTTTCGAGAGAAAACTGCC
1 GAAACTT-GTTTTAAG-AAAAACAATCTCAAGTGAGATAAATTTCTGTTTCAAG-GGAAATTGTC
* *
15194828 TCAAGCGAGAC
63 TCCAGTGAGAC
* * * *
15194839 G-AAGTTGGTTTTAAGAAAAATC-ATCTCGAGTGAGATAAAATTTCTTATTTCAAGGGAAATTAT
1 GAAACTT-GTTTTAAGAAAAA-CAATCTCAAGTGAGAT-AAATTTC-TGTTTCAAGGGAAATTGT
*
15194902 CTCCAATGAGAC
62 CTCCAGTGAGAC
* * * * *
15194914 GAAACTAGTTTTAAGAAAAACCATCTCAAGTGAGATAAATTTCTTGTTTCAAGAGAAACTGTCTT
1 GAAACTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTC-TGTTTCAAGGGAAATTGTCTC
*
15194979 CAGTGAGAT
65 CAGTGAGAC
* * *
15194988 GAAACTTGTTTTGAGAAAAATAATATCAAGTGAGATAAATTTC-GTTTCAAGGGAAAATTGTCTC
1 GAAACTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTCTGTTTCAAGGG-AAATTGTCTC
*
15195052 CAGTGAAAC
65 CAGTGAGAC
* * *
15195061 AAAACTTGTTTTGAGAAAAACACTCTCAAGTGAGATAAATTT
1 GAAACTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTT
15195103 ATGATCTTTG
Statistics
Matches: 277, Mismatches: 49, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
72 13 0.05
73 80 0.29
74 128 0.46
75 41 0.15
76 15 0.05
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (73 bp):
GAAACTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTCTGTTTCAAGGGAAATTGTCTCC
AGTGAGAC
Found at i:15200935 original size:42 final size:42
Alignment explanation
Indices: 15200873--15200968 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
15200863 TCCGAGTGAC
* *
15200873 AGAATATCTCACTTGACTTT-CTCGCGAAGAGGAGTCATTCGA
1 AGAATATCTCACATGACTTTCCT-GCGAAGAGGAGTCATCCGA
* *
15200915 AGAATATCTCACATGGCTTTCCTGCGAAGGGGAGTCATCCGA
1 AGAATATCTCACATGACTTTCCTGCGAAGAGGAGTCATCCGA
**
15200957 AGAGCATCTCAC
1 AGAATATCTCAC
15200969 TTGGTTTAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 45 0.96
43 2 0.04
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (42 bp):
AGAATATCTCACATGACTTTCCTGCGAAGAGGAGTCATCCGA
Found at i:15203245 original size:16 final size:16
Alignment explanation
Indices: 15203224--15203266 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
15203214 CTAGTTTTTC
15203224 TTATTAATTAT-ATATG
1 TTATT-ATTATCATATG
*
15203240 TTATTATTATCATATTA
1 TTATTATTATCATA-TG
15203257 TTATTATTAT
1 TTATTATTAT
15203267 TATTAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 5 0.21
16 8 0.33
17 11 0.46
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
TTATTATTATCATATG
Found at i:15203248 original size:3 final size:3
Alignment explanation
Indices: 15203240--15203292 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
15203230 ATTATATATG
* * *
15203240 TTA TTA TTA TCA -TA TTA TTA TTA TTA TTA TTA ATA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15203287 TTA TTA
1 TTA TTA
15203293 AATAATATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 1 0.02
3 44 0.98
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:15204436 original size:15 final size:15
Alignment explanation
Indices: 15204409--15204450 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
15204399 TCTGGTAAAA
*
15204409 TTATATATTTAGTCCT
1 TTATAT-TTTAGTACT
*
15204425 TTATATTTTAGTAGT
1 TTATATTTTAGTACT
15204440 TTATATTTTAG
1 TTATATTTTAG
15204451 CCTATTCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 18 0.75
16 6 0.25
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.60
Consensus pattern (15 bp):
TTATATTTTAGTACT
Found at i:15208185 original size:15 final size:17
Alignment explanation
Indices: 15208159--15208194 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
15208149 CTCTTAAGCT
15208159 AAAAGAAGATGAAAAA-
1 AAAAGAAGATGAAAAAG
15208175 AAAAGAA-ATGAAAAAG
1 AAAAGAAGATGAAAAAG
15208191 AAAA
1 AAAA
15208195 AGGAACGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.06
Consensus pattern (17 bp):
AAAAGAAGATGAAAAAG
Found at i:15210991 original size:22 final size:22
Alignment explanation
Indices: 15210966--15211011 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
15210956 ATTCTGCAAG
*
15210966 GATGATATATTCTCATTTCAAA
1 GATGATAAATTCTCATTTCAAA
*
15210988 GATGATAAATTCTCTTTTCAAA
1 GATGATAAATTCTCATTTCAAA
15211010 GA
1 GA
15211012 CAAAAGCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (22 bp):
GATGATAAATTCTCATTTCAAA
Found at i:15212270 original size:16 final size:15
Alignment explanation
Indices: 15212230--15212276 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
15212220 TCAGTTTTTG
*
15212230 TTATTAATTATATATA
1 TTATTAAATATAT-TA
15212246 TTATT-AATATTATTA
1 TTATTAAATA-TATTA
15212261 TTATTAAATAATATTA
1 TTATTAAAT-ATATTA
15212277 CAAGCCTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 10 0.37
16 16 0.59
17 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATTAAATATATTA
Found at i:15213420 original size:15 final size:15
Alignment explanation
Indices: 15213393--15213434 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
15213383 TATGGTAAAA
*
15213393 TTATATATTTAGTCCT
1 TTATAT-TTTAGTACT
*
15213409 TTATATTTTAGTAGT
1 TTATATTTTAGTACT
15213424 TTATATTTTAG
1 TTATATTTTAG
15213435 CCCTATTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 18 0.75
16 6 0.25
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.60
Consensus pattern (15 bp):
TTATATTTTAGTACT
Found at i:15220665 original size:21 final size:21
Alignment explanation
Indices: 15220639--15220687 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
15220629 GGATATGCAT
15220639 ATTATAAAGATGTGACTATAG
1 ATTATAAAGATGTGACTATAG
15220660 ATTATAAAGATGTGACTATAG
1 ATTATAAAGATGTGACTATAG
15220681 ATTATAA
1 ATTATAA
15220688 TGAAAACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.45, C:0.04, G:0.16, T:0.35
Consensus pattern (21 bp):
ATTATAAAGATGTGACTATAG
Found at i:15227660 original size:55 final size:55
Alignment explanation
Indices: 15227601--15228008 Score: 422
Period size: 55 Copynumber: 7.2 Consensus size: 55
15227591 CCTAGTACTG
* * * * * * *
15227601 ATACGGTAATTCACAAACTCATTATAAATTACATGGGGTTGCATACATAGTGCTA
1 ATACGGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCA
* * *
15227656 ATACGGAAATTCATAAACTCATTATGAATTTTGTGGCGTTGCACACATTGTGCCA
1 ATACGGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCA
* *
15227711 ATACGGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGTACACA-AATAGCCA
1 ATACGGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGT-GCCA
* * *
15227766 ATATGGAAATTCATAAACTCATTATGAATTTTGTGGGGTTACACACATAGTGCCA
1 ATACGGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCA
* * * * * * *
15227821 ATACGAAAATTTATAAATTCATTTTAAATTTATTATCAATTTTGTGAGGTTGCACACATAGTTCC
1 ATACG--------GAAATTCA---TAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCC
15227886 A
55 A
* * * *
15227887 ATACAGAAATTCATAAACTCGTTATGAATTTCGTGAGGTTGCTCACATAGTGCCA
1 ATACGGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCA
* * * *
15227942 ATACGGAAATTCATAAACTTATTATGAATTTCTTGAGGTTACACACATAGTGCCA
1 ATACGGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCA
*
15227997 ATATGGAAATTC
1 ATACGGAAATTC
15228009 CAACATATAC
Statistics
Matches: 296, Mismatches: 44, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
54 1 0.00
55 239 0.81
56 2 0.01
58 7 0.02
63 7 0.02
66 40 0.14
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (55 bp):
ATACGGAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCACACATAGTGCCA
Found at i:15227917 original size:66 final size:66
Alignment explanation
Indices: 15227786--15227917 Score: 167
Period size: 66 Copynumber: 2.0 Consensus size: 66
15227776 TCATAAACTC
* * * * *
15227786 ATTATGAATTTTGTGGGGTTACACACATAGTGCCAATACGAAAATTTATAAATTCATTTTAAATT
1 ATTATCAATTTTGTGAGGTTACACACATAGTGCCAATACGAAAATTCATAAACTCATTATAAATT
15227851 T
66 T
* * * *
15227852 ATTATCAATTTTGTGAGGTTGCACACATAGTTCCAATAC-AGAAATTCATAAACTCGTTATGAAT
1 ATTATCAATTTTGTGAGGTTACACACATAGTGCCAATACGA-AAATTCATAAACTCATTATAAAT
15227916 TT
65 TT
15227918 CGTGAGGTTG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
65 1 0.02
66 55 0.98
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.38
Consensus pattern (66 bp):
ATTATCAATTTTGTGAGGTTACACACATAGTGCCAATACGAAAATTCATAAACTCATTATAAATT
T
Found at i:15227984 original size:176 final size:176
Alignment explanation
Indices: 15227676--15227999 Score: 494
Period size: 176 Copynumber: 1.8 Consensus size: 176
15227666 TCATAAACTC
* * *
15227676 ATTATGAATTTTGTGGCGTTGCACACATTGTGCCAATACGGAAATTCATAAACTCATTATGAATT
1 ATTATCAATTTTGTGGCGTTGCACACATAGTGCCAATACAGAAATTCATAAACTCATTATGAATT
* * *
15227741 TCGTGGGGTTGTACACAAATAGCCAATATGGAAATTCATAAACTCATTATGAATTTTGTGGGGTT
66 TCGTGAGGTTGTACACAAATAGCCAATACGGAAATTCATAAACTCATTATGAATTTTGTGAGGTT
15227806 ACACACATAGTGCCAATACGAAAATTTATAAATTCATTTTAAATTT
131 ACACACATAGTGCCAATACGAAAATTTATAAATTCATTTTAAATTT
* *
15227852 ATTATCAATTTTGTGAG-GTTGCACACATAGTTCCAATACAGAAATTCATAAACTCGTTATGAAT
1 ATTATCAATTTTGTG-GCGTTGCACACATAGTGCCAATACAGAAATTCATAAACTCATTATGAAT
* *
15227916 TTCGTGAGGTTGCT-CACATAGT-GCCAATACGGAAATTCATAAACTTATTATGAATTTCT-TGA
65 TTCGTGAGGTTG-TACACA-AATAGCCAATACGGAAATTCATAAACTCATTATGAATTT-TGTGA
15227978 GGTTACACACATAGTGCCAATA
127 GGTTACACACATAGTGCCAATA
15228000 TGGAAATTCC
Statistics
Matches: 134, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
176 129 0.96
177 5 0.04
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (176 bp):
ATTATCAATTTTGTGGCGTTGCACACATAGTGCCAATACAGAAATTCATAAACTCATTATGAATT
TCGTGAGGTTGTACACAAATAGCCAATACGGAAATTCATAAACTCATTATGAATTTTGTGAGGTT
ACACACATAGTGCCAATACGAAAATTTATAAATTCATTTTAAATTT
Found at i:15228440 original size:24 final size:24
Alignment explanation
Indices: 15228408--15228459 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
15228398 TTCTGGAATT
15228408 CATTTCTCAATAATAGTATTGATA
1 CATTTCTCAATAATAGTATTGATA
15228432 CATTTCTCAATAATAGTATTGATA
1 CATTTCTCAATAATAGTATTGATA
15228456 CATT
1 CATT
15228460 CCTCTTGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (24 bp):
CATTTCTCAATAATAGTATTGATA
Found at i:15235488 original size:14 final size:14
Alignment explanation
Indices: 15235471--15235507 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
15235461 TAAAATTTTC
*
15235471 TTTTGAAAAATCAT
1 TTTTGAAAAATCAA
15235485 TTTTG--AAATCAA
1 TTTTGAAAAATCAA
15235497 TTTTGAAAAAT
1 TTTTGAAAAAT
15235508 TACTCCCCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 11 0.55
14 9 0.45
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.43
Consensus pattern (14 bp):
TTTTGAAAAATCAA
Found at i:15237369 original size:20 final size:22
Alignment explanation
Indices: 15237332--15237377 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
15237322 ATATAGTTTT
15237332 AAAAAACAACATAATT-AAATC
1 AAAAAACAACATAATTAAAATC
*
15237353 AAAAAACAACAT-TTTAAAATC
1 AAAAAACAACATAATTAAAATC
15237374 AAAA
1 AAAA
15237378 CAAAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (22 bp):
AAAAAACAACATAATTAAAATC
Found at i:15237847 original size:21 final size:22
Alignment explanation
Indices: 15237793--15237847 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 22
15237783 CCCTCGAGGG
15237793 GTATCGATACACATTCAAGGAA
1 GTATCGATACACATTCAAGGAA
* *
15237815 GATATCGGTACACATTCAAGG-T
1 G-TATCGATACACATTCAAGGAA
15237837 GTATCGATACA
1 GTATCGATACA
15237848 TAGCAAGGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.31
22 2 0.07
23 18 0.62
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (22 bp):
GTATCGATACACATTCAAGGAA
Found at i:15248416 original size:13 final size:13
Alignment explanation
Indices: 15248400--15248424 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15248390 TACGATGAAC
15248400 AATATCGATACTA
1 AATATCGATACTA
15248413 AATATCGATACT
1 AATATCGATACT
15248425 GATGCAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
AATATCGATACTA
Found at i:15248981 original size:54 final size:54
Alignment explanation
Indices: 15248894--15249287 Score: 556
Period size: 54 Copynumber: 7.3 Consensus size: 54
15248884 ATTTACCGAA
*
15248894 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGATTTTTTGTAT
1 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTGTAT
* **
15248948 TGGCACTGTGTGTGCAACTTAAGAAATTTATAATAAGTTTATGAATTTTCATAT
1 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTGTAT
*
15249002 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTATAT
1 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTGTAT
* * * **
15249056 TGGCACTGTGTGTACAACTTAAGAAATTCATTATTAGTTTATGAATTTTCCTAT
1 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTGTAT
* * * *
15249110 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
1 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTGTAT
* * **
15249164 TGGCACTATGTGTGCAACCTAAGAAATTCATAACT-AGTTTATGAATTTCCGTAT
1 TGGCACTGTGTGTGCAACTTAAGAAATTCATAA-TAAGTTTATGAATTTTTGTAT
* * *
15249218 TGGCACTGTGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
1 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTGTAT
* * *
15249272 TGACACTATGTATGCA
1 TGGCACTGTGTGTGCA
15249288 CCCCACGTAA
Statistics
Matches: 314, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
53 1 0.00
54 312 0.99
55 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (54 bp):
TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTGTAT
Found at i:15249300 original size:54 final size:54
Alignment explanation
Indices: 15248894--15249371 Score: 548
Period size: 54 Copynumber: 8.9 Consensus size: 54
15248884 ATTTACCGAA
* * * * *
15248894 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGATTTTTTGTAT
1 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
* * * * *
15248948 TGGCACTGTGTGTGCAACTTAAGAAATTTATAATAAGTTTATGAATTT-TCATAT
1 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCT-GTAT
* * * * *
15249002 TGGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTATAT
1 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
* * * * *
15249056 TGGCACTGTGTGTACAACTTAAGAAATTCATTATTAGTTTATGAATTT-TCCTAT
1 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCT-GTAT
15249110 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
1 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
* *
15249164 TGGCACTATGTGTGCAACCTAAGAAATTCATAACTAGTTTATGAATTTCCGTAT
1 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
*
15249218 TGGCACTGTGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
1 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
* * * * * * * * * **
15249272 TGACACTATGTATGCACCCCACGTAATTCATAATGAGTTTGTGAATTACCATAT
1 TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
* * * * * *
15249326 CGACACTAAGTGTGCAACCCACAG-AATTCATAATGAGCTTATGAAT
1 TGGCACTATGTGTGCAACCTA-AGAAATTCATAATTAGTTTATGAAT
15249372 GGTTGTATGA
Statistics
Matches: 382, Mismatches: 37, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
53 2 0.01
54 377 0.99
55 3 0.01
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (54 bp):
TGGCACTATGTGTGCAACCTAAGAAATTCATAATTAGTTTATGAATTTCTGTAT
Found at i:15250015 original size:2 final size:2
Alignment explanation
Indices: 15250008--15250032 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15249998 GACGTGTTTA
15250008 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15250033 ATTTAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15251806 original size:59 final size:59
Alignment explanation
Indices: 15251505--15251805 Score: 476
Period size: 59 Copynumber: 5.1 Consensus size: 59
15251495 TTTCTCTAAA
15251505 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * *
15251564 ATGAAAGGTTAAATGCCTAATTGTACATTTGGCAGAAATGTGCCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * * * *
15251623 ATGAAAGGTTAAATGCCTAACTGCGTATTTGACAAAAAGGTGCTAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * *
15251682 ATGAAAGGTTAAAGGCCTAACTGTGCATTTGGCATAAAGGTGTCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * *
15251741 ATGAAAAGTTAAATGTCTAACTGTGCATTTGGCAGAAAGGTGCCACTAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
15251800 ATGAAA
1 ATGAAA
15251806 AACATTGTAT
Statistics
Matches: 218, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 218 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (59 bp):
ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
Found at i:15263562 original size:50 final size:50
Alignment explanation
Indices: 15263503--15263602 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
15263493 TTTTATTGTA
15263503 TTTATGTGCATTGAATAATCTAAAAGATAATAATGTCCGTATAGTAATGT
1 TTTATGTGCATTGAATAATCTAAAAGATAATAATGTCCGTATAGTAATGT
15263553 TTTATGTGCATTGAATAATCTAAAAGATAATAATGTCCGTATAGTAATGT
1 TTTATGTGCATTGAATAATCTAAAAGATAATAATGTCCGTATAGTAATGT
15263603 GATTATTATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (50 bp):
TTTATGTGCATTGAATAATCTAAAAGATAATAATGTCCGTATAGTAATGT
Found at i:15264447 original size:2 final size:2
Alignment explanation
Indices: 15264440--15264483 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
15264430 TTTAATATTA
15264440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15264482 AT
1 AT
15264484 GCGCGTGTGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15266080 original size:3 final size:3
Alignment explanation
Indices: 15266072--15266137 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
15266062 AGAGATTCCC
15266072 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
15266120 ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
15266138 TCTACATTAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:15266301 original size:19 final size:18
Alignment explanation
Indices: 15266258--15266302 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
15266248 GAATAAATGG
15266258 TTGTTAGGGACTTAGAAA
1 TTGTTAGGGACTTAGAAA
* *
15266276 TCAGTTAGGGAAGTTAGAAA
1 T-TGTTAGGG-ACTTAGAAA
15266296 TTGTTAG
1 TTGTTAG
15266303 AGGATTAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 1 0.05
19 12 0.55
20 9 0.41
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.33
Consensus pattern (18 bp):
TTGTTAGGGACTTAGAAA
Found at i:15270754 original size:20 final size:19
Alignment explanation
Indices: 15270728--15270778 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
15270718 GAATAAAAGG
15270728 TTGTTAGGGATCTTAGAAA
1 TTGTTAGGGATCTTAGAAA
**
15270747 TCTGTTAGGGAAGTTAGAAA
1 T-TGTTAGGGATCTTAGAAA
15270767 TTGTTAGAGGAT
1 TTGTTAG-GGAT
15270779 TAGTTAGGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 7 0.26
20 20 0.74
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.35
Consensus pattern (19 bp):
TTGTTAGGGATCTTAGAAA
Found at i:15272183 original size:36 final size:35
Alignment explanation
Indices: 15272135--15272242 Score: 112
Period size: 35 Copynumber: 3.1 Consensus size: 35
15272125 TACTACCTAA
15272135 AATCACCATCTTCCATCTCCATTTTCACGCCTATA-
1 AATCACCATCTTCCATCTCCA-TTTCACGCCTATAT
* *
15272170 ACATCACCATCTTCCAT-TACCATTGCACTCCTATAT
1 A-ATCACCATCTTCCATCT-CCATTTCACGCCTATAT
** * * *
15272206 AATTTCCATCTTCTATCACCATTTCACGCCTAAAT
1 AATCACCATCTTCCATCTCCATTTCACGCCTATAT
15272241 AA
1 AA
15272243 CCACAAATCC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
35 41 0.68
36 19 0.32
ACGTcount: A:0.29, C:0.34, G:0.03, T:0.34
Consensus pattern (35 bp):
AATCACCATCTTCCATCTCCATTTCACGCCTATAT
Found at i:15280207 original size:11 final size:11
Alignment explanation
Indices: 15280191--15280216 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15280181 AAATTTTGGC
15280191 TTTTTTGTTTT
1 TTTTTTGTTTT
15280202 TTTTTTGTTTT
1 TTTTTTGTTTT
15280213 TTTT
1 TTTT
15280217 GCCCTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:15282914 original size:35 final size:35
Alignment explanation
Indices: 15282829--15282937 Score: 141
Period size: 35 Copynumber: 3.1 Consensus size: 35
15282819 TAAGATACTA
15282829 CCTA-AACATCACCATCTTCCATCT-CCATTTTCACG
1 CCTATAACATCACCATCTTCCAT-TACCA-TTTCACG
*
15282864 CCTATAACATCACCATCTTCCATTACCATTGCACG
1 CCTATAACATCACCATCTTCCATTACCATTTCACG
* * * *
15282899 CCTATATCATTACCATCTTCTATCACCATTTCACG
1 CCTATAACATCACCATCTTCCATTACCATTTCACG
15282934 CCTA
1 CCTA
15282938 AATAACCACC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
35 45 0.68
36 21 0.32
ACGTcount: A:0.27, C:0.38, G:0.04, T:0.32
Consensus pattern (35 bp):
CCTATAACATCACCATCTTCCATTACCATTTCACG
Found at i:15285387 original size:22 final size:22
Alignment explanation
Indices: 15285359--15285403 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
15285349 ATTGTTTTTA
15285359 ATTAAAAAAATAAAACAACGAC
1 ATTAAAAAAATAAAACAACGAC
15285381 ATTAAAAAAATAAAACAACGAC
1 ATTAAAAAAATAAAACAACGAC
15285403 A
1 A
15285404 CGAACGAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.69, C:0.13, G:0.04, T:0.13
Consensus pattern (22 bp):
ATTAAAAAAATAAAACAACGAC
Found at i:15286582 original size:535 final size:536
Alignment explanation
Indices: 15285561--15286632 Score: 2105
Period size: 535 Copynumber: 2.0 Consensus size: 536
15285551 AGAGGGCACG
15285561 ATGTACGTCCGACATGGATGCATTTTTCAGAGAATGCAATTTAATATTGGTATTATGTAGAAAGC
1 ATGTACGTCCGACATGGATGCATTTTTCAGAGAATGCAATTTAATATTGGTATTATGTAGAAAGC
15285626 GAGATTTCTGAGATATTGAAACGTCCTGAAAAATTTATCGCGAGTAGTATTTTACATACCTCTCC
66 GAGATTTCTGAGATATTGAAACGTCCTGAAAAATTTATCGCGAGTAGTATTTTACATACCTCTCC
15285691 TTTTCCAATACGCGAAGTATGTATTGCTGGAAAAAATTGATAATTTTGGAGCTTTGAATGAGAAG
131 TTTTCCAATACGCGAAGTATGTATTGCTGGAAAAAATTGATAATTTTGGAGCTTTGAATGAGAAG
15285756 TTGATCCAAACATTGTTGAGGAAAATGTGGAACCAATCATTGGTTCATAAATGTGCAGACGTGCA
196 TTGATCCAAACATTGTTGAGGAAAATGTGGAACCAATCATTGGTTCATAAATGTGCAGACGTGCA
15285821 CCATTTGGGTAATGTGAATGTCTGAACCGGTCTAGCTCTTTGCGGGCTTGCGAATATTTAAACCC
261 CCATTTGGGTAATGTGAATGTCTGAACCGGTCTAGCTCTTTGCGGGCTTGCGAATATTTAAACCC
15285886 AAATATGAGATATTTTCCTCAAATAGAGAATATATTTTCAAAATCTATTTTGGAATTAAAATTAT
326 AAATATGAGATATTTTCCTCAAATAGAGAATATATTTTCAAAATCTATTTTGGAATTAAAATTAT
15285951 AAATATTAAAAAATTATTTTAATCAAAACAATAATTTTGAAAATTGCTTGATTTTCATTACATTA
391 AAATATTAAAAAATTATTTTAATCAAAACAATAATTTTGAAAATTGCTTGATTTTCATTACATTA
15286016 GGTAAAAAAATTCCATTATTATCATATATAAACTCCCTATACACACCGTGTTAACCTATTA-GTT
456 GGTAAAAAAATTCCATTATTATCATATATAAACTCCCTATACACACCGTGTTAACCTATTAGGTT
15286080 AAACACAATTCAAAAA
521 AAACACAATTCAAAAA
15286096 ATGTACGTCCGACATGGATGCATTTTTCAGAGAATGCAATTTAATATTGGTATTATGTAGAAAGC
1 ATGTACGTCCGACATGGATGCATTTTTCAGAGAATGCAATTTAATATTGGTATTATGTAGAAAGC
15286161 GAGATTTCTGAGATATTGAAACGTCCTGAAAAATTTATCGCGAGTAGTATTTTACATACCTCTCC
66 GAGATTTCTGAGATATTGAAACGTCCTGAAAAATTTATCGCGAGTAGTATTTTACATACCTCTCC
15286226 TTTTCCAATACGCGAAGTATGTATTGCTGGAAAAAATTGATAATTTTGGAGCTTTGAATGAGAAG
131 TTTTCCAATACGCGAAGTATGTATTGCTGGAAAAAATTGATAATTTTGGAGCTTTGAATGAGAAG
15286291 TTGATCCAAACATTGTTGAGGAAAATGTGGAACCAATCATTGGTTCATAAATGTGCAGACGTGCA
196 TTGATCCAAACATTGTTGAGGAAAATGTGGAACCAATCATTGGTTCATAAATGTGCAGACGTGCA
15286356 CCATTTGGGTAATGTGAATGTCTGAACCGGTCTAGCTCTTTGCGGGCTTGCGAATATTTAAACCC
261 CCATTTGGGTAATGTGAATGTCTGAACCGGTCTAGCTCTTTGCGGGCTTGCGAATATTTAAACCC
15286421 AAATATGAGATATTTTCCTCAAATAGAGAATATATTTTCAAAATCTATTTTGGAATTAAAATTAT
326 AAATATGAGATATTTTCCTCAAATAGAGAATATATTTTCAAAATCTATTTTGGAATTAAAATTAT
15286486 AAATATTAAAAAATTATTTTAATCAAAACAATAATTTTGAAAATTGCTTGATTTTCATTACATTA
391 AAATATTAAAAAATTATTTTAATCAAAACAATAATTTTGAAAATTGCTTGATTTTCATTACATTA
15286551 GGTAAAAAAATTCCA--ATTATTCATAATATAAACTCCCTATACACACCGTGTTAACCTATTAGG
456 GGTAAAAAAATTCCATTATTA-TCAT-ATATAAACTCCCTATACACACCGTGTTAACCTATTAGG
15286614 TTAAACACAATTCAAAAA
519 TTAAACACAATTCAAAAA
15286632 A
1 A
15286633 CAACTCAAAA
Statistics
Matches: 534, Mismatches: 0, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
533 4 0.01
534 4 0.01
535 506 0.95
536 20 0.04
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (536 bp):
ATGTACGTCCGACATGGATGCATTTTTCAGAGAATGCAATTTAATATTGGTATTATGTAGAAAGC
GAGATTTCTGAGATATTGAAACGTCCTGAAAAATTTATCGCGAGTAGTATTTTACATACCTCTCC
TTTTCCAATACGCGAAGTATGTATTGCTGGAAAAAATTGATAATTTTGGAGCTTTGAATGAGAAG
TTGATCCAAACATTGTTGAGGAAAATGTGGAACCAATCATTGGTTCATAAATGTGCAGACGTGCA
CCATTTGGGTAATGTGAATGTCTGAACCGGTCTAGCTCTTTGCGGGCTTGCGAATATTTAAACCC
AAATATGAGATATTTTCCTCAAATAGAGAATATATTTTCAAAATCTATTTTGGAATTAAAATTAT
AAATATTAAAAAATTATTTTAATCAAAACAATAATTTTGAAAATTGCTTGATTTTCATTACATTA
GGTAAAAAAATTCCATTATTATCATATATAAACTCCCTATACACACCGTGTTAACCTATTAGGTT
AAACACAATTCAAAAA
Found at i:15291425 original size:169 final size:168
Alignment explanation
Indices: 15291146--15291484 Score: 660
Period size: 169 Copynumber: 2.0 Consensus size: 168
15291136 ATTTGCATTA
15291146 TATTAAACTCTTAGGCTTTATACATTATCTTACACATATTAGGAGATGATGTACTTAGCTCATGA
1 TATTAAACTCTTAGGCTTTATACATTATCTTACACATATTAGGAGATGATGTACTTAGCTCATGA
*
15291211 CCATTATACTTAGCTCACATTACCATAAACAAACATGGCAGCAAGGTATTTAGCTCGTTTTAACT
66 CCATTATACTTAGCTCACATTACCATAAACAAACATGGCAGCAAGGTATTTAGCTCGTTTTAA-A
15291276 CAATATCATGAACTTACCTTGTTTCCTTGCACATATAGG
130 CAATATCATGAACTTACCTTGTTTCCTTGCACATATAGG
15291315 TATTAAACTCTTAGGCTTTATACATTATCTTACACATATTAGGAGATGATGTACTTAGCTCATGA
1 TATTAAACTCTTAGGCTTTATACATTATCTTACACATATTAGGAGATGATGTACTTAGCTCATGA
15291380 CCATTATACTTAGCTCACATTACCATAAACAAACATGGCAGCAAGGTATTTAGCTCGTTTTAAAC
66 CCATTATACTTAGCTCACATTACCATAAACAAACATGGCAGCAAGGTATTTAGCTCGTTTTAAAC
15291445 AATATCATGAACTTACCTTGTTTCCTTGCACATATAGG
131 AATATCATGAACTTACCTTGTTTCCTTGCACATATAGG
15291483 TA
1 TA
15291485 CAATGGAGTG
Statistics
Matches: 169, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
168 41 0.24
169 128 0.76
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (168 bp):
TATTAAACTCTTAGGCTTTATACATTATCTTACACATATTAGGAGATGATGTACTTAGCTCATGA
CCATTATACTTAGCTCACATTACCATAAACAAACATGGCAGCAAGGTATTTAGCTCGTTTTAAAC
AATATCATGAACTTACCTTGTTTCCTTGCACATATAGG
Found at i:15293261 original size:14 final size:14
Alignment explanation
Indices: 15293242--15293279 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
15293232 TATACAAATG
15293242 CATGGTGATTAGCA
1 CATGGTGATTAGCA
* *
15293256 CATGGTGACTGGCA
1 CATGGTGATTAGCA
15293270 CATGGTGATT
1 CATGGTGATT
15293280 TGCCTTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.29
Consensus pattern (14 bp):
CATGGTGATTAGCA
Found at i:15293771 original size:45 final size:44
Alignment explanation
Indices: 15293703--15293885 Score: 198
Period size: 45 Copynumber: 4.2 Consensus size: 44
15293693 TAATCCAAGG
*
15293703 CTTTTAATTATTGGGTTGTCAAAAGTAAAATCAAAGGATTAGTTC
1 CTTTTGATTATT-GGTTGTCAAAAGTAAAATCAAAGGATTAGTTC
* * * *
15293748 CTTTTGATTATTGTGCTGCCAAAAGTAAAATCAAAGGATAAGTTT
1 CTTTTGATTATTG-GTTGTCAAAAGTAAAATCAAAGGATTAGTTC
* * *
15293793 CTTTCGATTATTGGATTGTGAAAATTAAAATCAAAGGATTAGTTC
1 CTTTTGATTATTGG-TTGTCAAAAGTAAAATCAAAGGATTAGTTC
* *
15293838 CTTTTGATTATTAGGTTG------GTAAAATTAAAGGATTAATTC
1 CTTTTGATTATT-GGTTGTCAAAAGTAAAATCAAAGGATTAGTTC
15293877 CTTTTGATT
1 CTTTTGATT
15293886 TCTATTTGTT
Statistics
Matches: 119, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 27 0.23
44 2 0.02
45 88 0.74
46 2 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (44 bp):
CTTTTGATTATTGGTTGTCAAAAGTAAAATCAAAGGATTAGTTC
Found at i:15295734 original size:13 final size:13
Alignment explanation
Indices: 15295718--15295760 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
15295708 GATAGTAAGA
*
15295718 CATAATAGTGAGG
1 CATAACAGTGAGG
15295731 CATAACAGTGAGG
1 CATAACAGTGAGG
15295744 CATAACAGTGAGG
1 CATAACAGTGAGG
15295757 CATA
1 CATA
15295761 CAAGGTGAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.19
Consensus pattern (13 bp):
CATAACAGTGAGG
Found at i:15297012 original size:81 final size:81
Alignment explanation
Indices: 15296914--15297564 Score: 860
Period size: 81 Copynumber: 8.0 Consensus size: 81
15296904 TAACTTTTCT
* * * * *
15296914 TCTAACTTGCATGATTGACACTTTTCTGCCAAATGAAC-AGTAAGGCCATTTAT-TTCTTACTCA
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACT-AGGCCATTTATCTT-TTACTCA
*
15296977 ACAGTCTTTAACCATTCA
64 ACAGTCTTTAACCGTTCA
* * *
15296995 TATAACTGGCATAATTGACACATTTATGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
* * *
15297060 GGTCTTTAACCCTTAA
66 AGTCTTTAACCGTTCA
* * * * *
15297076 TCTGATTGGCATAATTGACACATTTCTGGCAAATTCACAACTAGGCCATTTATCTTTTACTCAA-
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
*
15297140 TGATCTTTAACCGTTCA
66 AG-TCTTTAACCGTTCA
* *
15297157 TCTGACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGACCATTTATCTTTTACTCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
*
15297222 AATCTTTAACCGTTCA
66 AGTCTTTAACCGTTCA
* * * * *
15297238 TCTAACTGGCATAATTGACACCTTTCTTCCAAATGCATAGCTAGGGCATTTATCTTTTCCTCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
* ** *
15297303 AATCTTTAACTATTTA
66 AGTCTTTAACCGTTCA
* * * *
15297319 TCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACTCAAT
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
*
15297384 GGTCTTTAACCGTTCA
66 AGTCTTTAACCGTTCA
*
15297400 TCTAACTAGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
* *
15297465 GGTCTTTAACCGCTCA
66 AGTCTTTAACCGTTCA
* * *
15297481 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGTCGTTTATCTTTTACTCAAC
1 TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
*
15297546 -GATCTTTAGCCGTTCA
66 AG-TCTTTAACCGTTCA
15297562 TCT
1 TCT
15297565 CAAAGTTGAT
Statistics
Matches: 505, Mismatches: 60, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
80 2 0.00
81 499 0.99
82 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (81 bp):
TCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
AGTCTTTAACCGTTCA
Found at i:15297365 original size:243 final size:243
Alignment explanation
Indices: 15296914--15297553 Score: 951
Period size: 243 Copynumber: 2.6 Consensus size: 243
15296904 TAACTTTTCT
* * * * *
15296914 TCTAACTTGCATGATTGACACTTTTCTGCCAAATGAAC-AGTAAGGCCATTTAT-TTCTTACTCA
1 TCTAACTAGCATAATTGACACCTTTCTGCCAAATGCACAACT-AGGCCATTTATCTT-TTACTCA
* * * * *
15296977 ACAGTCTTTAACCATTCATATAACTGGCATAATTGACACATTTATGCCAAATGCACAACTAGGCC
64 ACAGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCC
* * * *
15297042 ATTTATCTTTTACTCAACGGTCTTTAACCCTTAATCTGATTGGCATAATTGACACATTTCTGGCA
129 ATTTATCTTTTACTCAACGATCTTTAACCATTAATCTAACTGGCATAATTGACACATTTCTGGCA
*
15297107 AATTCACAACTAGGCCATTTATCTTTTACTCAATGATCTTTAACCGTTCA
194 AATGCACAACTAGGCCATTTATCTTTTACTCAATGATCTTTAACCGTTCA
* * *
15297157 TCTGACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGACCATTTATCTTTTACTCAAC
1 TCTAACTAGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
* * * *
15297222 AATCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTTCCAAATGCATAGCTAGGGCAT
66 AGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
* * * * *
15297287 TTATCTTTTCCTCAACAATCTTTAACTATTTATCTAACTGGCATAATTGACACATTTCTGTCAAA
131 TTATCTTTTACTCAACGATCTTTAACCATTAATCTAACTGGCATAATTGACACATTTCTGGCAAA
* *
15297352 TGCACAGCTAGGCCATTTATCTTTTACTCAATGGTCTTTAACCGTTCA
196 TGCACAACTAGGCCATTTATCTTTTACTCAATGATCTTTAACCGTTCA
15297400 TCTAACTAGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
1 TCTAACTAGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
* * * *
15297465 GGTCTTTAACCGCTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGTCGT
66 AGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
15297530 TTATCTTTTACTCAACGATCTTTA
131 TTATCTTTTACTCAACGATCTTTA
15297554 GCCGTTCATC
Statistics
Matches: 355, Mismatches: 40, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
243 351 0.99
244 4 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.35
Consensus pattern (243 bp):
TCTAACTAGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC
AGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
TTATCTTTTACTCAACGATCTTTAACCATTAATCTAACTGGCATAATTGACACATTTCTGGCAAA
TGCACAACTAGGCCATTTATCTTTTACTCAATGATCTTTAACCGTTCA
Found at i:15297810 original size:19 final size:21
Alignment explanation
Indices: 15297773--15297823 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 21
15297763 AGGCTCACTA
*
15297773 GTATCGATACTACTATATTATG
1 GTATCGATACTAC-ATATTACG
15297795 GTATCGATACT-C-TATTACG
1 GTATCGATACTACATATTACG
*
15297814 GTATTGATAC
1 GTATCGATAC
15297824 CATAAACACT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 15 0.56
21 1 0.04
22 11 0.41
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (21 bp):
GTATCGATACTACATATTACG
Found at i:15301601 original size:111 final size:111
Alignment explanation
Indices: 15301407--15301726 Score: 532
Period size: 111 Copynumber: 2.9 Consensus size: 111
15301397 CCTTTCATAC
* *
15301407 TCCTTTATGTACTATTTATGTTTTTCCTTTATGACGTCCATTCATACCAATTATGCATTATTGTA
1 TCCTTTATGTACTATTTACGTTTTTCCTTTATGACGTCCATTCATACCAATTATGCATTGTTGTA
* * *
15301472 TATTTTATATCTATATGACATCCTTTAATACCACTTGCATTATAAT
66 CATTTTATATCTATATGACATCCTTTCATACCACTTGCATCATAAT
* *
15301518 TCCTTTATGTACTTTTTACATTTTTCCTTTATGACGTCCATTCATACCAATTATGCATTGTTGTA
1 TCCTTTATGTACTATTTACGTTTTTCCTTTATGACGTCCATTCATACCAATTATGCATTGTTGTA
* * *
15301583 CATTGTATATCTATATGACACCCTTTCATACTACTTGCATCATAAT
66 CATTTTATATCTATATGACATCCTTTCATACCACTTGCATCATAAT
* *
15301629 TCCTTTATGTACTGTTTACGTTTTTCCTTTATGACGTCCATTCATACCAATTATGAATTGTTGTA
1 TCCTTTATGTACTATTTACGTTTTTCCTTTATGACGTCCATTCATACCAATTATGCATTGTTGTA
15301694 CATTTTATATCTATATGACATCCTTTCATACCA
66 CATTTTATATCTATATGACATCCTTTCATACCA
15301727 ATTACAGTTT
Statistics
Matches: 193, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
111 193 1.00
ACGTcount: A:0.26, C:0.20, G:0.08, T:0.46
Consensus pattern (111 bp):
TCCTTTATGTACTATTTACGTTTTTCCTTTATGACGTCCATTCATACCAATTATGCATTGTTGTA
CATTTTATATCTATATGACATCCTTTCATACCACTTGCATCATAAT
Found at i:15301683 original size:46 final size:49
Alignment explanation
Indices: 15301633--15301730 Score: 112
Period size: 49 Copynumber: 2.1 Consensus size: 49
15301623 CATAATTCCT
* * * *
15301633 TTATGTACTGTT-TACGTTTT-T-CCTTTATGACGTCCATTCATACCAA
1 TTATGAACTGTTGTACATTTTATACCTATATGACATCCATTCATACCAA
* * *
15301679 TTATGAATTGTTGTACATTTTATATCTATATGACATCCTTTCATACCAA
1 TTATGAACTGTTGTACATTTTATACCTATATGACATCCATTCATACCAA
15301728 TTA
1 TTA
15301731 CAGTTTATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
46 10 0.24
47 7 0.17
48 1 0.02
49 24 0.57
ACGTcount: A:0.27, C:0.18, G:0.09, T:0.46
Consensus pattern (49 bp):
TTATGAACTGTTGTACATTTTATACCTATATGACATCCATTCATACCAA
Found at i:15301972 original size:65 final size:65
Alignment explanation
Indices: 15301857--15301982 Score: 171
Period size: 65 Copynumber: 1.9 Consensus size: 65
15301847 CTTTTACTCA
* * * *
15301857 ATGGTCTTTAACCATTCATCTAACGGGCATAATTGATACCTTTCTACCAAATGCACAACTATTAC
1 ATGGTCTTTAACCATTCATATAACGGGCATAATTGACACATTTATACCAAATGCACAACTATTAC
* * * * *
15301922 ATGGTCTTTAATCGTTCATATAGCTGGCATAATTGACACATTTATGCCAAATGCACAACTA
1 ATGGTCTTTAACCATTCATATAACGGGCATAATTGACACATTTATACCAAATGCACAACTA
15301983 GGCCATTTAA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
65 52 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33
Consensus pattern (65 bp):
ATGGTCTTTAACCATTCATATAACGGGCATAATTGACACATTTATACCAAATGCACAACTATTAC
Found at i:15302137 original size:81 final size:81
Alignment explanation
Indices: 15301924--15303182 Score: 1564
Period size: 81 Copynumber: 15.6 Consensus size: 81
15301914 ACTATTACAT
* * * * * *
15301924 GGTCTTTAATCGTTCATATAGCTGGCATAATTGACACATTTATGCCAAATGCACAACTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
*
15301989 TTAAT-TTTCACTCAAC
66 TT-ATCTTTTACTCAAC
* * * * *
15302005 GGTC-TTAACCTTTCATCTACCTGACATAATTGACACCTTTCCG-TAATATGCACAGCTAGGCCA
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA-ATGCACAGCTAGGCCA
*
15302068 TTTATGTTTTACTCAAC
65 TTTATCTTTTACTCAAC
* * * * *
15302085 GGTCTTTAACCGTTCATATAATTGGCATAATTGACACCTTTCTACCAAATGCATAACTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
15302150 TTATCGTTTTACTCAAC
66 TTATC-TTTTACTCAAC
* * * * ** * *
15302167 GATCTTTAACCGTTCATCTAACCGGTATAATTGTCATGTTTCTGCCAAATTCACAGATAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
* *
15302232 TTAGCTTTTACACAAC
66 TTATCTTTTACTCAAC
** *
15302248 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACATATTTTTGCCAAATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
15302313 TTATCTTTTACTCAAC
66 TTATCTTTTACTCAAC
* * * *
15302329 GGTCTTTAACCATTCATCTAACTGGCATAATTAACACCTTTCTGCCAAATGCAAAACTAGG--AT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
15302392 TTATCTTTTACTCAAC
66 TTATCTTTTACTCAAC
* *
15302408 GGTCTTTAACCGTTCATCTAACTGTCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
15302473 TTATCTTTTACTCAAC
66 TTATCTTTTACTCAAC
* * * * *
15302489 GGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGTAAAACTAAG--AT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
15302552 TTATCTTTTACTCAAC
66 TTATCTTTTACTCAAC
* * * * * ***
15302568 AGTCTTTAATCGTTCATCTAACTGGCATAATTGACACATTTATGTCAAATGCGTTGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
*
15302633 TTATCTTTTACTCAAT
66 TTATCTTTTACTCAAC
* *
15302649 AGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCATATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
*
15302714 TTATGTTTTACTCAAC
66 TTATCTTTTACTCAAC
* * * * * *
15302730 AGTCTTTAACCATTCATCTAACTGGCATAATTAACATCTTTCTGCCAAATGCATAACTAGG--AT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
* *
15302793 TTTTCTTTTACTGAAC
66 TTATCTTTTACTCAAC
* * * * * * * *
15302809 GATCTTTAACCGTACATCTAAGTAGCATAATTAACAGCTTTCTGCAAAATGCACAGCTAGACCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
* *
15302874 TTATCATTTACTAAAC
66 TTATCTTTTACTCAAC
** ** * * *
15302890 AATCTTTAACTATTTATCTAACTGGCATAATTAACACCTTTATGCCAAATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
*
15302955 TTATCTTTTACTCAAT
66 TTATCTTTTACTCAAC
* * * * *
15302971 GGTCGTTAACCATTCATCTAACTGGCATAATTGACACTTTTCTACCAAATGCACAACTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
15303036 TTATCTTTTACTCAAC
66 TTATCTTTTACTCAAC
* * * * * *
15303052 GATCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTTCTAAATGCACAGTTAGGCCGT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
*
15303117 TTATCGTTTACTCAAC
66 TTATCTTTTACTCAAC
* * * *
15303133 GGTCTTTAACCATTTATCTAAATGGCATAATTGACAACTTTCTGCCAAAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAAT
15303183 ATGCAGCTAG
Statistics
Matches: 1011, Mismatches: 156, Indels: 22
0.85 0.13 0.02
Matches are distributed among these distances:
79 209 0.21
80 63 0.06
81 670 0.66
82 69 0.07
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (81 bp):
GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCAT
TTATCTTTTACTCAAC
Found at i:15302440 original size:160 final size:161
Alignment explanation
Indices: 15301924--15303182 Score: 1546
Period size: 160 Copynumber: 7.8 Consensus size: 161
15301914 ACTATTACAT
* * * *
15301924 GGTCTTTAATCGTTCATATAGCTGGCATAATTGACACATTTATGCCAAATGCACAACTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTATGCCAAATGCACAGCTAGGCCAT
* * * * * *
15301989 TTAAT-TTTCACTCAACGGTC-TTAACCTTTCATCTACCTGACATAATTGACACCTTTCCG-TAA
66 TT-ATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
* *
15302051 TATGCACAGCTAGGCCATTTATGTTTTACTCAAC
130 -ATGCACAACTAGG-CATTTATCTTTTACTCAAC
* * * * * * *
15302085 GGTCTTTAACCGTTCATATAATTGGCATAATTGACACCTTTCTACCAAATGCATAACTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTATGCCAAATGCACAGCTAGGCCAT
* * * * * **
15302150 TTATCGTTTTACTCAACGATCTTTAACCGTTCATCTAACCGGTATAATTGTCATGTTTCTGCCAA
66 TTATC-TTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
* * *
15302215 ATTCACAGA-TAGGCCATTTAGCTTTTACACAAC
130 ATGCACA-ACTAGG-CATTTATCTTTTACTCAAC
* *
15302248 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACATATTTTTGCCAAATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTATGCCAAATGCACAGCTAGGCCAT
*
15302313 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTAACACCTTTCTGCCAAA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAA
*
15302378 TGCAAAACTAGG-ATTTATCTTTTACTCAAC
131 TGCACAACTAGGCATTTATCTTTTACTCAAC
* *
15302408 GGTCTTTAACCGTTCATCTAACTGTCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTATGCCAAATGCACAGCTAGGCCAT
15302473 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAA
* * *
15302538 TGTAAAACTAAG-ATTTATCTTTTACTCAAC
131 TGCACAACTAGGCATTTATCTTTTACTCAAC
* * * ***
15302568 AGTCTTTAATCGTTCATCTAACTGGCATAATTGACACATTTATGTCAAATGCGTTGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTATGCCAAATGCACAGCTAGGCCAT
** * *
15302633 TTATCTTTTACTCAATAGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCATA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAA
* *
15302698 TGCACAGCTAGGCCATTTATGTTTTACTCAAC
131 TGCACAACTAGG-CATTTATCTTTTACTCAAC
* * * * * *
15302730 AGTCTTTAACCATTCATCTAACTGGCATAATTAACATC-TTTCTGCCAAATGCATAACTAGG--A
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACA-CATTTATGCCAAATGCACAGCTAGGCCA
* * * * * * * * * *
15302792 TTTTTCTTTTACTGAACGATCTTTAACCGTACATCTAAGTAGCATAATTAACAGCTTTCTGCAAA
65 TTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
* * * *
15302857 ATGCACAGCTAGACCATTTATCATTTACTAAAC
130 ATGCACAACTAG-GCATTTATCTTTTACTCAAC
** ** * * *
15302890 AATCTTTAACTATTTATCTAACTGGCATAATTAACACCTTTATGCCAAATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTATGCCAAATGCACAGCTAGGCCAT
* * * *
15302955 TTATCTTTTACTCAATGGTCGTTAACCATTCATCTAACTGGCATAATTGACACTTTTCTACCAAA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAA
15303020 TGCACAACTAGGCCATTTATCTTTTACTCAAC
131 TGCACAACTAGG-CATTTATCTTTTACTCAAC
* * * * * *
15303052 GATCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTTCTAAATGCACAGTTAGGCCGT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTATGCCAAATGCACAGCTAGGCCAT
* * * *
15303117 TTATCGTTTACTCAACGGTCTTTAACCATTTATCTAAATGGCATAATTGACAACTTTCTGCCAAA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAA
15303182 T
131 T
15303183 ATGCAGCTAG
Statistics
Matches: 950, Mismatches: 134, Indels: 27
0.86 0.12 0.02
Matches are distributed among these distances:
159 1 0.00
160 433 0.46
161 61 0.06
162 333 0.35
163 120 0.13
164 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (161 bp):
GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTATGCCAAATGCACAGCTAGGCCAT
TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAA
TGCACAACTAGGCATTTATCTTTTACTCAAC
Found at i:15302511 original size:241 final size:242
Alignment explanation
Indices: 15301924--15303182 Score: 1548
Period size: 241 Copynumber: 5.2 Consensus size: 242
15301914 ACTATTACAT
* * * * *
15301924 GGTCTTTAATCGTTCATATAGCTGGCATAATTGACACATTTATGCCAAATGCACAACTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
* * * * * * *
15301989 TTAAT-TTTCACTCAACGGTC-TTAACCTTTCATCTACCTGACATAATTGACACCTTTCCG-TAA
66 TT-ATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACATCTTTCTGCCAA
* * * *
15302051 TATGCACAGCTAGGCCATTTATGTTTTACTCAACGGTCTTTAACCGTTCATATAATTGGCATAAT
130 -ATGCACAACTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCGTTCATCTAACTGGCATAAT
* * *
15302116 TGACACCTTTCTACCAAATGCATAACTAGGCCATTTATCGTTTTACTCAAC
194 TGACACCTTTCTGCCAAATGCACAGCTAGG-CATTTATC-TTTTACTCAAC
* * * * ** * *
15302167 GATCTTTAACCGTTCATCTAACCGGTATAATTGTCATGTTTCTGCCAAATTCACAGATAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
* * * * *
15302232 TTAGCTTTTACACAACGGTCTTTAACCGTTCATCTAACTGGCATAATTGACATATTTTTGCCAAA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACATCTTTCTGCCAAA
* * *
15302297 TGCACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTA
131 TGCACAACTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCGTTCATCTAACTGGCATAATTG
* *
15302362 ACACCTTTCTGCCAAATGCAAAACTAGG-ATTTATCTTTTACTCAAC
196 ACACCTTTCTGCCAAATGCACAGCTAGGCATTTATCTTTTACTCAAC
*
15302408 GGTCTTTAACCGTTCATCTAACTGTCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
*
15302473 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACATCTTTCTGCCAAA
* * * * *
15302538 TGTAAAACTAAG--ATTTATCTTTTACTCAACAGTCTTTAATCGTTCATCTAACTGGCATAATTG
131 TGCACAACTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCGTTCATCTAACTGGCATAATTG
* * * *** *
15302601 ACACATTTATGTCAAATGCGTTGCTAGGCCATTTATCTTTTACTCAAT
196 ACACCTTTCTGCCAAATGCACAGCTAGG-CATTTATCTTTTACTCAAC
* * *
15302649 AGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCATATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
* * *
15302714 TTATGTTTTACTCAACAGTCTTTAACCATTCATCTAACTGGCATAATTAACATCTTTCTGCCAAA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACATCTTTCTGCCAAA
* * * * * * * *
15302779 TGCATAACTAGG--ATTTTTCTTTTACTGAACGATCTTTAACCGTACATCTAAGTAGCATAATTA
131 TGCACAACTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCGTTCATCTAACTGGCATAATTG
* * * * *
15302842 ACAGCTTTCTGCAAAATGCACAGCTAGACCATTTATCATTTACTAAAC
196 ACACCTTTCTGCCAAATGCACAGCTAG-GCATTTATCTTTTACTCAAC
** ** * * * *
15302890 AATCTTTAACTATTTATCTAACTGGCATAATTAACACCTTTATGCCAAATGCACAGCTAGGCCAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
* * *
15302955 TTATCTTTTACTCAATGGTCGTTAACCATTCATCTAACTGGCATAATTGACA-CTTTTCTACCAA
66 TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACATC-TTTCTGCCAA
*
15303019 ATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAACCGTTCATCTAACTGGCATAATT
130 ATGCACAACTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCGTTCATCTAACTGGCATAATT
* * * * * *
15303084 GACACATTTCTTCTAAATGCACAGTTAGGCCGTTTATCGTTTACTCAAC
195 GACACCTTTCTGCCAAATGCACAGCTAGG-CATTTATCTTTTACTCAAC
* * *
15303133 GGTCTTTAACCATTTATCTAAATGGCATAATTGACA-ACTTTCTGCCAAAT
1 GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACA-TTTCTGCCAAAT
15303183 ATGCAGCTAG
Statistics
Matches: 875, Mismatches: 130, Indels: 22
0.85 0.13 0.02
Matches are distributed among these distances:
239 68 0.08
240 1 0.00
241 485 0.55
242 8 0.01
243 192 0.22
244 119 0.14
245 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (242 bp):
GGTCTTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCAT
TTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGACATCTTTCTGCCAAA
TGCACAACTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCGTTCATCTAACTGGCATAATTG
ACACCTTTCTGCCAAATGCACAGCTAGGCATTTATCTTTTACTCAAC
Found at i:15303236 original size:68 final size:68
Alignment explanation
Indices: 15303148--15303330 Score: 224
Period size: 68 Copynumber: 2.7 Consensus size: 68
15303138 TTAACCATTT
* ** *
15303148 ATCTAAATGGCATAATTGACAACTTTCTGCCAAATATGCAGCTAGGCCTCAAAGACACTTTGTCT
1 ATCTAACTGGCATAATTGACAACTTTCTGCCAAATACACAGCTAGGCCTCAAAGACACTTTGCCT
15303213 TTC
66 TTC
* * * * * *
15303216 ATCTAACTGGCATAATTGAC-ACTTTTTTGTCAAATGCACAGTTAGGCCTCAAAGGCAGTTTGCC
1 ATCTAACTGGCATAATTGACAAC-TTTCTGCCAAATACACAGCTAGGCCTCAAAGACACTTTGCC
15303280 TTTC
65 TTTC
* ** *
15303284 ATCTAACTGGCATAATTGACACCTTTCTATCAAATGCACAGCTAGGC
1 ATCTAACTGGCATAATTGACAACTTTCTGCCAAATACACAGCTAGGC
15303331 TGTTTATCTT
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
67 2 0.02
68 96 0.97
69 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (68 bp):
ATCTAACTGGCATAATTGACAACTTTCTGCCAAATACACAGCTAGGCCTCAAAGACACTTTGCCT
TTC
Found at i:15304730 original size:18 final size:18
Alignment explanation
Indices: 15304707--15304772 Score: 132
Period size: 18 Copynumber: 3.7 Consensus size: 18
15304697 TAATGTAATT
15304707 AGTATCGATACTGATATG
1 AGTATCGATACTGATATG
15304725 AGTATCGATACTGATATG
1 AGTATCGATACTGATATG
15304743 AGTATCGATACTGATATG
1 AGTATCGATACTGATATG
15304761 AGTATCGATACT
1 AGTATCGATACT
15304773 AAGAGAAAGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (18 bp):
AGTATCGATACTGATATG
Found at i:15304876 original size:95 final size:95
Alignment explanation
Indices: 15304775--15304954 Score: 254
Period size: 95 Copynumber: 1.9 Consensus size: 95
15304765 TCGATACTAA
* ** *
15304775 GAGAAAGGTATCGATACCTTGGAATCCAAAAT-GTAGAAATGGTATCGAAACTGAAAGGGAGTAT
1 GAGAAAGGTATAGATACCAAGGAATCCAAAATACT-GAAATGGTATCGAAACTGAAAGGGAGTAT
*
15304839 CGGTACCATAGTATAAAAGTACCAGTACAAG
65 CGATACCATAGTATAAAAGTACCAGTACAAG
* * * *
15304870 GAGAAAGGTATAGATACCAAGGATTCCAGAATACTGAAATGGTATCGATACTGAAAGGTAGTATC
1 GAGAAAGGTATAGATACCAAGGAATCCAAAATACTGAAATGGTATCGAAACTGAAAGGGAGTATC
*
15304935 GATACCATAGTATAGAAGTA
66 GATACCATAGTATAAAAGTA
15304955 TCGATACCAT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
95 73 0.99
96 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (95 bp):
GAGAAAGGTATAGATACCAAGGAATCCAAAATACTGAAATGGTATCGAAACTGAAAGGGAGTATC
GATACCATAGTATAAAAGTACCAGTACAAG
Found at i:15305514 original size:81 final size:81
Alignment explanation
Indices: 15305379--15305632 Score: 427
Period size: 81 Copynumber: 3.1 Consensus size: 81
15305369 GTTCTTAAAA
*
15305379 TAAAATATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
15305444 GCTAAATGCCTTTGAG
66 GCTAAATGCCTTTGAG
* * * *
15305460 TAAAAGATTAATTGCCTAGGTGTGCATTTAGCAGAAAGATGCCAATATTGCAAGTTAGATGGAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
* *
15305525 GATAAATTCCTTTGAG
66 GCTAAATGCCTTTGAG
* *
15305541 TAAAAGATTAATTTCCTAGCTATGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
15305606 GCTAAATGCCTTTGAG
66 GCTAAATGCCTTTGAG
15305622 TAAAAGATTAA
1 TAAAAGATTAA
15305633 ATGCTTAACG
Statistics
Matches: 158, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 158 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (81 bp):
TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
GCTAAATGCCTTTGAG
Found at i:15317368 original size:45 final size:45
Alignment explanation
Indices: 15317319--15317712 Score: 522
Period size: 45 Copynumber: 8.7 Consensus size: 45
15317309 AAAGAATTCC
** * * *
15317319 ATAGTTGAAATGCATATGGGTGCATGGTCAGCTGAAATGTATGCT
1 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
* * *
15317364 ATAGTTGAAATGCATATGGGTGCATTGTCAACA-AGAAATTATGCC
1 ATAGTTGAAATGCATATGGGTGCATTATCAACAGA-AAAGTATGCT
* * *
15317409 ATAGCTGAAATGCATATGGGTGCATTATCAACAGAAAAATATGCG
1 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
* * *
15317454 ATAGTTGAAATACATATGGGTGCATTATCAACAGAAAAATATGCG
1 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
*
15317499 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATACT
1 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
* * *
15317544 ATAGTTGAAATGTATATGAGTGCATTATCAATAGAAAAGTATGCT
1 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
* *
15317589 ATAGTTGAAATGCATATGGGTGCATTACCAACAGAAAAGTATACT
1 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
*
15317634 ATAGTTGAAATGCATATGGGTGCATTATCAACAAAAAAGTATGCT
1 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
* * * *
15317679 ATATTTTAAAATGCATAAT-GGTGCTTTATAAACA
1 ATA-GTTGAAATGCAT-ATGGGTGCATTATCAACA
15317713 TGAATGGAGG
Statistics
Matches: 313, Mismatches: 32, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
44 1 0.00
45 286 0.91
46 24 0.08
47 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (45 bp):
ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
Found at i:15323706 original size:20 final size:21
Alignment explanation
Indices: 15323659--15323709 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
15323649 TATGCTGTAT
*
15323659 GTATCGATACTGATTCAATCA
1 GTATCGATACTGATTCAAACA
* *
15323680 CTATCGATACTG-TTGAAACA
1 GTATCGATACTGATTCAAACA
15323700 GTATCGATAC
1 GTATCGATAC
15323710 CATTGTAAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (21 bp):
GTATCGATACTGATTCAAACA
Found at i:15323873 original size:95 final size:96
Alignment explanation
Indices: 15323699--15323896 Score: 238
Period size: 95 Copynumber: 2.1 Consensus size: 96
15323689 CTGTTGAAAC
* * * *
15323699 AGTATCGATACCATTGTAAGGGTATCGATACCAAGCAAACATCGAATCTAATTTCGGTATTGATA
1 AGTATCGAAACCATGGTAAGGGTATCGATACCAAGCAAACATCGAACCTAATTTCGGTATCGATA
** * *
15323764 CCATAAGGGGGTATCGGTACCATACTATTGT
66 CCATAAGGAAGTATCAGTACCATACTATTGA
* * * *
15323795 AGTATCGAAACCATGGTAAGTGTATTGATACC-AGGAAACATCGAACCTAATTTTGGTATCGATA
1 AGTATCGAAACCATGGTAAGGGTATCGATACCAAGCAAACATCGAACCTAATTTCGGTATCGATA
* * *
15323859 CCCA-GAGGAAGTATCAGTACCATAGTGTTGA
66 -CCATAAGGAAGTATCAGTACCATACTATTGA
15323890 AGTATCG
1 AGTATCG
15323897 GTACTAGGGT
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
95 55 0.64
96 31 0.36
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (96 bp):
AGTATCGAAACCATGGTAAGGGTATCGATACCAAGCAAACATCGAACCTAATTTCGGTATCGATA
CCATAAGGAAGTATCAGTACCATACTATTGA
Found at i:15323920 original size:95 final size:96
Alignment explanation
Indices: 15323699--15323920 Score: 225
Period size: 95 Copynumber: 2.3 Consensus size: 96
15323689 CTGTTGAAAC
* ** * * *
15323699 AGTATCGATACCATTGTAAGGGTATCGATACCAAGCAAACATCGAATCTAATTTCGGTATTGATA
1 AGTATCGAAACCAGGGTAAGTGTATCGATACCAAGCAAACATCGAACCTAATTTCGGTATCGATA
** * *
15323764 CCATAAGGGGGTATCGGTACCATACTATTGT
66 CCATAAGGAAGTATCAGTACCATACTATTGA
* * * *
15323795 AGTATCGAAACCATGGTAAGTGTATTGATACC-AGGAAACATCGAACCTAATTTTGGTATCGATA
1 AGTATCGAAACCAGGGTAAGTGTATCGATACCAAGCAAACATCGAACCTAATTTCGGTATCGATA
* * *
15323859 CCCA-GAGGAAGTATCAGTACCATAGTGTTGA
66 -CCATAAGGAAGTATCAGTACCATACTATTGA
** *
15323890 AGTATCGGTACTAGGGT-AGTAGTATCGATAC
1 AGTATCGAAACCAGGGTAAGT-GTATCGATAC
15323921 TACTAAGCTG
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
94 3 0.03
95 70 0.67
96 31 0.30
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (96 bp):
AGTATCGAAACCAGGGTAAGTGTATCGATACCAAGCAAACATCGAACCTAATTTCGGTATCGATA
CCATAAGGAAGTATCAGTACCATACTATTGA
Found at i:15324421 original size:45 final size:45
Alignment explanation
Indices: 15324363--15324582 Score: 257
Period size: 45 Copynumber: 4.9 Consensus size: 45
15324353 GTATGAAAGG
* ** * *
15324363 ATGCCATAGTTGAAATGCATATGGGTGCATGGTCAACTGAAAAGT
1 ATGCTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAAT
* * * * *
15324408 ATGCTATACTTGAAATGCATATAGG-GCATTGTCAACATAAAATT
1 ATGCTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAAT
*
15324452 ATGGC-ATAGTTG-AATGCATATGGGTGTATTATCAACAGAAAAAT
1 AT-GCTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAAT
* *
15324496 ATACGATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAAAT
1 ATGCTATAGTTGAAATGCATATGGGTGCATTATCAACAG-AAAAAT
* * *
15324542 ATGCTATAGTTGAAATGCATATAGGTACAATATCAACAGAA
1 ATGCTATAGTTGAAATGCATATGGGTGCATTATCAACAGAA
15324583 TCGTAAATCA
Statistics
Matches: 150, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
43 12 0.08
44 47 0.31
45 51 0.34
46 40 0.27
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (45 bp):
ATGCTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAAT
Found at i:15324509 original size:88 final size:90
Alignment explanation
Indices: 15324367--15324582 Score: 258
Period size: 88 Copynumber: 2.4 Consensus size: 90
15324357 GAAAGGATGC
** * * * *
15324367 CATAGTTGAAATGCATATGGGTGCATGGTCAACTGAAAAGTATGCTATACTTGAAATGCATATAG
1 CATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAATATACGATACTTGAAATGCATATAG
* * *
15324432 G-GCATTGTCAACA-TAAAATTATGG
66 GTGCATTATCAACAGAAAAAATAT-G
* * *
15324456 CATAGTTG-AATGCATATGGGTGTATTATCAACAGAAAAATATACGATAGTTGAAATGCATATGG
1 CATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAATATACGATACTTGAAATGCATATAG
15324520 GTGCATTATCAACAGAAAAAATATG
66 GTGCATTATCAACAGAAAAAATATG
* * *
15324545 CTATAGTTGAAATGCATATAGGTACAATATCAACAGAA
1 C-ATAGTTGAAATGCATATGGGTGCATTATCAACAGAA
15324583 TCGTAAATCA
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
88 48 0.45
89 21 0.20
90 14 0.13
91 24 0.22
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (90 bp):
CATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAATATACGATACTTGAAATGCATATAG
GTGCATTATCAACAGAAAAAATATG
Found at i:15339876 original size:54 final size:54
Alignment explanation
Indices: 15339826--15340273 Score: 646
Period size: 54 Copynumber: 8.3 Consensus size: 54
15339816 TATGAATCAA
* **
15339826 GTGAAATGCACACTTAGTACCGAAACGGTTATTCATCCACATAGGATGAATTTT
1 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
*
15339880 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTTC
1 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
* *
15339934 GTGAAATGCACACTTAGTGTCGAAATGGTTATTCATCCACATAGGATGAATTCC
1 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
* * *
15339988 CTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAAGATGAATTCT
1 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
* * *
15340042 GTGAAATGCACAATTAGTGTCGAAACGGTTATTCATCCACATAGGATGAATTTC
1 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
* *
15340096 GTGAAATGCACAGTTAGTGTCGAAACGGTTATTCATCCACATAGGATGAATTCC
1 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
** * * * * * * **
15340150 GTGAAATTAACTCTCAGTGCTGAAATGGTTATTCA-ACGCGGAGGATGAATTCC
1 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
**
15340203 GTGAAATGCACACTTAGTGTTGAAACGGTTATTCATCCACATAGGATGAATTCC
1 GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
*
15340257 ATGAAATGCACACTTAG
1 GTGAAATGCACACTTAG
15340274 AGTCGACTTG
Statistics
Matches: 352, Mismatches: 41, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 43 0.12
54 309 0.88
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (54 bp):
GTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCC
Found at i:15340362 original size:2 final size:2
Alignment explanation
Indices: 15340293--15340343 Score: 70
Period size: 2 Copynumber: 26.0 Consensus size: 2
15340283 GGTAATTACC
*
15340293 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AA AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15340333 AT CAT AT AT AT
1 AT -AT AT AT AT
15340344 TTAATTAGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 40 0.91
3 2 0.05
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15340776 original size:95 final size:95
Alignment explanation
Indices: 15340658--15340846 Score: 281
Period size: 95 Copynumber: 2.0 Consensus size: 95
15340648 CAATACTTCT
* * *
15340658 ATACTATGGTACTAATACCCCC-TTCTGGTATCGATACCAAATTTAGGTTCAATGTTTCCTAGTA
1 ATACTATGGTACCAATACCCCCTTTC-GGTATCGATACCAAATTTAGATTCAATGTTGCCTAGTA
*
15340722 TCGATACCCTTACCATGGTATCGATACTACA
65 TCGATACCCTTACCATGATATCGATACTACA
* * * * *
15340753 ATACTATGGTACCGATACTCCCTTTCGGTATCGATACCAAATTTAGATTCGATGTTGCTTGGTAT
1 ATACTATGGTACCAATACCCCCTTTCGGTATCGATACCAAATTTAGATTCAATGTTGCCTAGTAT
15340818 CGATACCCTTACCATGATATCGATACTAC
66 CGATACCCTTACCATGATATCGATACTAC
15340847 CTCATTGGTA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
95 81 0.96
96 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.34
Consensus pattern (95 bp):
ATACTATGGTACCAATACCCCCTTTCGGTATCGATACCAAATTTAGATTCAATGTTGCCTAGTAT
CGATACCCTTACCATGATATCGATACTACA
Found at i:15347451 original size:54 final size:54
Alignment explanation
Indices: 15347389--15347790 Score: 527
Period size: 54 Copynumber: 7.4 Consensus size: 54
15347379 TTACGACTCT
* *
15347389 CGTGAAATGTACACTTAGTGCCGAAATGGTTATTCATCCACATAAGATGAATTC
1 CGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTC
* * * * * *
15347443 TGTAAAATGCACACTCAGTTCCGAAATAGTTATTCATCCACATAGGATAAATTC
1 CGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTC
* * *
15347497 CATGAAATGCACACTTAGTGCTGAAATGGTTATTCATCCATATAGGATGAATTC
1 CGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTC
* * * * * * *
15347551 AGTGAAATGTACACTTACTGCCAAAACGTTTATTCATCCCCATAGGATGAATTC
1 CGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTC
* * * *
15347605 CGTGAAATGCACAATTAGTGTCGAAATGATTATTCATCCACATAGGATGAATTT
1 CGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTC
* * *
15347659 CGTGAAATGCACACTTAATACCGAAACGGTTATTCATCCAC-TCAGGATGAATTC
1 CGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACAT-AGGATGAATTC
* * *
15347713 TGTGAAATGCACACTCAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTC
1 CGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTC
*
15347767 CGTGAAATGCACACTTAGTACCGA
1 CGTGAAATGCACACTTAGTGCCGA
15347791 CTTGGTAATC
Statistics
Matches: 295, Mismatches: 51, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
53 1 0.00
54 293 0.99
55 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (54 bp):
CGTGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTC
Found at i:15348330 original size:95 final size:94
Alignment explanation
Indices: 15348135--15348332 Score: 279
Period size: 95 Copynumber: 2.1 Consensus size: 94
15348125 ACCCTGGTAC
* * * * *
15348135 CGATACTTCTATACTATGGCACCGATACCCATTCCGGTATCGATACCAAATTTAGGTTTGATGTT
1 CGATACTACAATACTATGGCACCCATACCCATTCCGGTATCGATACCAAATTTAGATTCGATGTT
* *
15348200 TCCTGGTATCGATACCCTTACCATGTTAT
66 GCCTGGTATCGATACCCTTACCATGATAT
** *
15348229 TAATACTACAATACTATGGTACCCATACCCACTTCCGGTATCGATACCAAATTTAGATTCGATGT
1 CGATACTACAATACTATGGCACCCATACCCA-TTCCGGTATCGATACCAAATTTAGATTCGATGT
* *
15348294 TGCTTGGTATCGATGCCCTTACCATGATAT
65 TGCCTGGTATCGATACCCTTACCATGATAT
15348324 CGATACTAC
1 CGATACTAC
15348333 CTCATTGGTA
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
94 25 0.28
95 64 0.72
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (94 bp):
CGATACTACAATACTATGGCACCCATACCCATTCCGGTATCGATACCAAATTTAGATTCGATGTT
GCCTGGTATCGATACCCTTACCATGATAT
Found at i:15352967 original size:20 final size:21
Alignment explanation
Indices: 15352926--15352968 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
15352916 CGAAATATCA
*
15352926 TTCATGATAAATATCCTATATG
1 TTCATGATAAACAT-CTATATG
15352948 TTCATGATAAACAT-TATATG
1 TTCATGATAAACATCTATATG
15352968 T
1 T
15352969 AATGATCAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
22 13 0.65
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (21 bp):
TTCATGATAAACATCTATATG
Found at i:15362004 original size:90 final size:89
Alignment explanation
Indices: 15361846--15362020 Score: 296
Period size: 90 Copynumber: 2.0 Consensus size: 89
15361836 AAACACACCA
*
15361846 TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATATT
1 TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATAAT
* *
15361911 TAATTAATTGGAATTTAATAATCC
66 TAATTAATTGAAATTAAATAATCC
* *
15361935 TTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCATATTAATTAAATCTATAA
1 TTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCTATAA
15362000 TTAATTAATTGAAATTAAATA
65 TTAATTAATTGAAATTAAATA
15362021 TTCGGGATTA
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 32 0.40
90 48 0.60
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (89 bp):
TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATAAT
TAATTAATTGAAATTAAATAATCC
Found at i:15369652 original size:90 final size:90
Alignment explanation
Indices: 15369542--15369804 Score: 420
Period size: 90 Copynumber: 2.9 Consensus size: 90
15369532 TCCTGAATAT
* * * *
15369542 TTAATTTC-AATTAATTAAATATATATTTAATTAATTTGAAATAATAAATTCCCTGATATGATTA
1 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAATA
*
15369606 GGATAACTTGGATATAAAAGGATTA
66 GGGTAACTTGGATATAAAAGGATTA
* *
15369631 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAAGAATAAAATCCCTGATATAAATA
1 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAATA
15369696 GGGTAACTTGGATATAAAAGGATTA
66 GGGTAACTTGGATATAAAAGGATTA
* * *
15369721 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTA
1 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAATA
*
15369786 GGGTAACTTGGCTATAAAA
66 GGGTAACTTGGATATAAAA
15369805 TGGTGTGTTA
Statistics
Matches: 160, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 7 0.04
90 153 0.96
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (90 bp):
TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAATA
GGGTAACTTGGATATAAAAGGATTA
Found at i:15376483 original size:88 final size:84
Alignment explanation
Indices: 15376314--15376483 Score: 218
Period size: 86 Copynumber: 2.0 Consensus size: 84
15376304 TAATCCTGAA
* * * *
15376314 TATTTAATTTCAATTAATTAAATATATTTAATTAATTTGAAAATAAAATCCCTGATATAATTAGG
1 TATTAAATTCCAATTAATTAAATATATTTAATTAATTTGAAAATAAAATACCTGATATAACTAGG
15376379 GAACTGGATATAAAAGGAT
66 GAACTGGATATAAAAGGAT
*
15376398 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-ACCT-ATATGAC
1 TATTAAATTCCAATTAATTAAATAT--ATTTAATTAATTTG-AA-AATAAAATACCTGATATAAC
*
15376461 TAGGGTAACTTGGCTATAAAAGG
62 TAGGG-AAC-TGGATATAAAAGG
15376484 GTGTGTAGGT
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
84 23 0.31
86 24 0.32
87 8 0.11
88 19 0.26
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.36
Consensus pattern (84 bp):
TATTAAATTCCAATTAATTAAATATATTTAATTAATTTGAAAATAAAATACCTGATATAACTAGG
GAACTGGATATAAAAGGAT
Found at i:15382972 original size:90 final size:89
Alignment explanation
Indices: 15382815--15382980 Score: 289
Period size: 90 Copynumber: 1.9 Consensus size: 89
15382805 CCTAACACAC
15382815 CCTTTTATAGTCAAGTTAACCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGTCAAGTTAACCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
15382880 TTTAATTAATTGGAATTTAATAAT
66 TTTAATTAATTGGAATTTAATAAT
* *
15382904 CCTTTTATA-TCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTTAAATTAATTAAATCTA
1 CCTTTTATAGT-CAAGTTAACCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCTA
15382968 TATTTAATTAATT
64 TATTTAATTAATT
15382981 AATTAAAACT
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
88 1 0.01
89 32 0.44
90 40 0.55
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (89 bp):
CCTTTTATAGTCAAGTTAACCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGGAATTTAATAAT
Found at i:15385338 original size:90 final size:88
Alignment explanation
Indices: 15385174--15385349 Score: 298
Period size: 89 Copynumber: 2.0 Consensus size: 88
15385164 GACCTAACAC
15385174 ATCCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAAGTAATTAAATATA
1 ATCCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAAGTAATTAAATATA
*
15385239 TATTTAATTAATTAGAATTTAATA
66 TATTTAATTAATT-GAAATTAATA
* * *
15385263 ATCCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCT
1 ATCCTTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAAGTAATTAAATAT
15385328 ATATTTAATTAATTGAAATTAA
65 ATATTTAATTAATTGAAATTAA
15385350 AAATTCGGGA
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 43 0.52
90 39 0.48
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.44
Consensus pattern (88 bp):
ATCCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAAGTAATTAAATATA
TATTTAATTAATTGAAATTAATA
Done.