Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 66 of 89
Found at i:15687274 original size:3 final size:3
Alignment explanation
Indices: 15687260--15687354 Score: 97
Period size: 3 Copynumber: 32.0 Consensus size: 3
15687250 GTTGTATCTG
* * *
15687260 TAA TAA -AA TAA TAA TAT TAA TAA TAA TAA TAT TAA TAA CAA -AA CTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* * *
15687307 TAA TAA TAA TAA TAA AAA TAA AAA TAA AAA TAA TAA -ATA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
15687352 TAA
1 TAA
15687355 AACCAAATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
2 5 0.07
3 68 0.89
4 3 0.04
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:15688514 original size:18 final size:18
Alignment explanation
Indices: 15688491--15688526 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15688481 GACCAAAAAG
*
15688491 CTGACTGCATCGGCAAAT
1 CTGACTGCATCGACAAAT
*
15688509 CTGACTGTATCGACAAAT
1 CTGACTGCATCGACAAAT
15688527 GAACCACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (18 bp):
CTGACTGCATCGACAAAT
Found at i:15692035 original size:26 final size:24
Alignment explanation
Indices: 15692006--15692089 Score: 71
Period size: 26 Copynumber: 3.3 Consensus size: 24
15691996 GGAAAAAATG
15692006 AATAAATGAAAAAAATAAAGAATAAA
1 AATAAAT-AAAAAAATAAA-AATAAA
* **
15692032 AATAAGTAAAAAAAATAAAAGGAAA
1 AATAAAT-AAAAAAATAAAAATAAA
* *
15692057 AATAAATAAATAAATGAAATATTAAA
1 AATAAATAAAAAAAT-AAA-AATAAA
15692083 AA-AAATA
1 AATAAATA
15692090 TATATATATA
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
24 7 0.15
25 18 0.38
26 23 0.48
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (24 bp):
AATAAATAAAAAAATAAAAATAAA
Found at i:15692057 original size:25 final size:26
Alignment explanation
Indices: 15692006--15692066 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
15691996 GGAAAAAATG
* *
15692006 AATAAATGAAAAAAATAAAGAATAAA
1 AATAAATAAAAAAAATAAAGAAGAAA
* *
15692032 AATAAGTAAAAAAAATAAA-AGGAAA
1 AATAAATAAAAAAAATAAAGAAGAAA
15692057 AATAAATAAA
1 AATAAATAAA
15692067 TAAATGAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 13 0.43
26 17 0.57
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (26 bp):
AATAAATAAAAAAAATAAAGAAGAAA
Found at i:15692063 original size:16 final size:16
Alignment explanation
Indices: 15692026--15692066 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
15692016 AAAAATAAAG
*
15692026 AATAAA-AATAAGTAAA
1 AATAAATAA-AAGGAAA
15692042 AA-AAATAAAAGGAAA
1 AATAAATAAAAGGAAA
15692057 AATAAATAAA
1 AATAAATAAA
15692067 TAAATGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (16 bp):
AATAAATAAAAGGAAA
Found at i:15692077 original size:13 final size:13
Alignment explanation
Indices: 15692006--15692076 Score: 58
Period size: 13 Copynumber: 5.5 Consensus size: 13
15691996 GGAAAAAATG
15692006 AATAAATGAAAAA
1 AATAAATGAAAAA
15692019 AATAAA-GAATAAA
1 AATAAATGAA-AAA
* *
15692032 AATAAGTAAAAAA
1 AATAAATGAAAAA
* *
15692045 AATAAAAG-GAAA
1 AATAAATGAAAAA
*
15692057 AATAAAT-AAATA
1 AATAAATGAAAAA
15692069 AATGAAAT
1 AAT-AAAT
15692077 ATTAAAAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
12 17 0.38
13 26 0.58
14 2 0.04
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (13 bp):
AATAAATGAAAAA
Found at i:15692092 original size:2 final size:2
Alignment explanation
Indices: 15692087--15692111 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15692077 ATTAAAAAAA
15692087 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15692112 AATGAGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15692342 original size:2 final size:2
Alignment explanation
Indices: 15692335--15692359 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15692325 GATAATTACA
15692335 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15692360 GTAATAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15692439 original size:19 final size:19
Alignment explanation
Indices: 15692408--15692445 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
15692398 GTATATATAT
*
15692408 ATATATATATAAATAATAA
1 ATATATATATAAAAAATAA
15692427 ATATAGTAT-TAAAAAATAA
1 ATATA-TATATAAAAAATAA
15692446 CCAAATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
ATATATATATAAAAAATAA
Found at i:15693014 original size:37 final size:37
Alignment explanation
Indices: 15692973--15693077 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
15692963 GTGCTTGTGG
* * *
15692973 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * *
15693010 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
*
15693047 ATCATATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
15693078 GACGAAAAGG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:15693727 original size:32 final size:32
Alignment explanation
Indices: 15693681--15693763 Score: 139
Period size: 32 Copynumber: 2.6 Consensus size: 32
15693671 GTGTACGATT
*
15693681 CCCTTCGTCATGAAGTTGAAACCACGGGTGGC
1 CCCTTCGTCGTGAAGTTGAAACCACGGGTGGC
* *
15693713 CTCTTCGTCGTGAAGTTGAAACCGCGGGTGGC
1 CCCTTCGTCGTGAAGTTGAAACCACGGGTGGC
15693745 CCCTTCGTCGTGAAGTTGA
1 CCCTTCGTCGTGAAGTTGA
15693764 GCTGGAATTG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (32 bp):
CCCTTCGTCGTGAAGTTGAAACCACGGGTGGC
Found at i:15693996 original size:106 final size:106
Alignment explanation
Indices: 15693821--15694884 Score: 1700
Period size: 106 Copynumber: 10.0 Consensus size: 106
15693811 GCATTGTTCC
*
15693821 GAGTCCAATAT-CTTC-CGTCGTGAAGTTGAAATTGGCTCTGGAATTGGGAAGTTGTTTATTGAC
1 GAGTCCAATATCCTTCGC-T-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGAC
* * *
15693884 AACCAGCGGTCCCTTCGTCGTGAAGTAGAACTTGCATTGTCTT
64 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
15693927 GAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * *
15693992 CCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCATTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
15694033 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
15694098 CCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * * *
15694139 GAGTCCAATATCCTTCGTTGTGAAGCTGGAATTGGCTCTGAAATTGAGAAGTTGCTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
15694204 CCAGCGGTCCTTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
15694245 GAGTCCAATATCCTTCGCTGTAAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
15694310 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
15694351 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAGTTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
15694416 CTAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
15694457 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAATTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
15694522 CCAGCGGTTCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
15694563 GAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTTTGAAATTAGGAAGTTGTTTATTGAAAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
15694628 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGAGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
15694669 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
15694734 CCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
15694775 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * * *
15694840 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
15694881 GAGT
1 GAGT
15694885 GGCACGATAT
Statistics
Matches: 886, Mismatches: 70, Indels: 4
0.92 0.07 0.00
Matches are distributed among these distances:
106 880 0.99
107 5 0.01
108 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:15695429 original size:18 final size:19
Alignment explanation
Indices: 15695396--15695432 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15695386 TGTTGAATCC
*
15695396 CCAAATAATGCTCCAATAT
1 CCAAATAATGCCCCAATAT
15695415 CCAAA-AATGCCCCAATAT
1 CCAAATAATGCCCCAATAT
15695433 TTGATGTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.43, C:0.30, G:0.05, T:0.22
Consensus pattern (19 bp):
CCAAATAATGCCCCAATAT
Found at i:15695646 original size:24 final size:24
Alignment explanation
Indices: 15695618--15695678 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
15695608 AATATCAATA
*
15695618 AAGAGTTTCGAAAGATGTTTAATC
1 AAGAGTTTTGAAAGATGTTTAATC
*
15695642 AAGAGTTTTGAAAGATGTTTAATT
1 AAGAGTTTTGAAAGATGTTTAATC
*
15695666 AAAAGTTTTGAAA
1 AAGAGTTTTGAAA
15695679 ATATTGTCTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.36
Consensus pattern (24 bp):
AAGAGTTTTGAAAGATGTTTAATC
Found at i:15695897 original size:22 final size:22
Alignment explanation
Indices: 15695871--15695919 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
15695861 GTGTTTGGTT
15695871 AAAGGTTTGGCATTTGATGCTC
1 AAAGGTTTGGCATTTGATGCTC
*
15695893 AAAGGTTTGGTATTTGATGCTC
1 AAAGGTTTGGCATTTGATGCTC
15695915 AAAGG
1 AAAGG
15695920 ATTGATGGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.35
Consensus pattern (22 bp):
AAAGGTTTGGCATTTGATGCTC
Found at i:15696425 original size:28 final size:28
Alignment explanation
Indices: 15696394--15696453 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
15696384 TTTTTGTCCA
15696394 TTTTCCTT-TTGATTTTTGCTCTTTTTCT
1 TTTTCCTTATTG-TTTTTGCTCTTTTTCT
** * *
15696422 TTTTTGTTATTGTTTTTTCTTTTTTTCT
1 TTTTCCTTATTGTTTTTGCTCTTTTTCT
15696450 TTTT
1 TTTT
15696454 TTCTTTTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.89
29 3 0.11
ACGTcount: A:0.03, C:0.12, G:0.07, T:0.78
Consensus pattern (28 bp):
TTTTCCTTATTGTTTTTGCTCTTTTTCT
Found at i:15696426 original size:8 final size:8
Alignment explanation
Indices: 15696415--15696462 Score: 51
Period size: 8 Copynumber: 5.5 Consensus size: 8
15696405 ATTTTTGCTC
15696415 TTTTTCTTT
1 TTTTTC-TT
*
15696424 TTTGTTATT
1 TTT-TTCTT
15696433 GTTTTTTCTT
1 -TTT-TTCTT
15696443 TTTTTCTT
1 TTTTTCTT
15696451 TTTTTCTT
1 TTTTTCTT
15696459 TTTT
1 TTTT
15696463 GTTCTTGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
8 17 0.50
9 8 0.24
10 9 0.26
ACGTcount: A:0.02, C:0.08, G:0.04, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:15700768 original size:17 final size:18
Alignment explanation
Indices: 15700746--15700781 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
15700736 TGTTAGAGGG
15700746 AAAAAATGAA-AAAATGA
1 AAAAAATGAAGAAAATGA
15700763 AAAAAATGAAGAAAATGA
1 AAAAAATGAAGAAAATGA
15700781 A
1 A
15700782 GAATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (18 bp):
AAAAAATGAAGAAAATGA
Found at i:15700782 original size:9 final size:9
Alignment explanation
Indices: 15700748--15700784 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
15700738 TTAGAGGGAA
15700748 AAAATGAA-
1 AAAATGAAG
*
15700756 AAAATGAAA
1 AAAATGAAG
15700765 AAAATGAAG
1 AAAATGAAG
15700774 AAAATGAAG
1 AAAATGAAG
15700783 AA
1 AA
15700785 TAAAATAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 8 0.30
9 19 0.70
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.11
Consensus pattern (9 bp):
AAAATGAAG
Found at i:15700789 original size:12 final size:12
Alignment explanation
Indices: 15700774--15700826 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 12
15700764 AAAAATGAAG
*
15700774 AAAATGAAGAAT
1 AAAATGAAAAAT
15700786 AAAATAGTAAAAAT
1 AAAAT-G-AAAAAT
15700800 AAAAAT-AAAAAT
1 -AAAATGAAAAAT
*
15700812 AAAAGGAAAAAT
1 AAAATGAAAAAT
15700824 AAA
1 AAA
15700827 TAATAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
11 4 0.11
12 20 0.57
13 1 0.03
14 5 0.14
15 5 0.14
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.15
Consensus pattern (12 bp):
AAAATGAAAAAT
Found at i:15700804 original size:6 final size:6
Alignment explanation
Indices: 15700783--15700833 Score: 57
Period size: 6 Copynumber: 8.0 Consensus size: 6
15700773 GAAAATGAAG
**
15700783 AATAAA ATAGTAAA AATAAA AATAAA AATAAA AGGAAA AATAAA TAATAAA
1 AATAAA A-A-TAAA AATAAA AATAAA AATAAA AATAAA AATAAA -AATAAA
15700834 TAAATAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
6 25 0.66
7 8 0.21
8 5 0.13
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:15700829 original size:4 final size:4
Alignment explanation
Indices: 15700820--15700852 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
15700810 ATAAAAGGAA
15700820 AAAT AAAT -AAT AAAT AAAT AAAT AAAT ATAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT A
15700853 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
3 3 0.11
4 20 0.74
5 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:15700852 original size:21 final size:21
Alignment explanation
Indices: 15700826--15700870 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
15700816 GGAAAAATAA
15700826 ATAATAAATAAATAAATAAAT
1 ATAATAAATAAATAAATAAAT
* * * *
15700847 ATAATATATATATATATATAT
1 ATAATAAATAAATAAATAAAT
15700868 ATA
1 ATA
15700871 TAATGAGTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAATAAATAAATAAATAAAT
Found at i:15701585 original size:21 final size:21
Alignment explanation
Indices: 15701561--15701601 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15701551 TTTTTACACT
15701561 ATATATTATTATTATATATAC
1 ATATATTATTATTATATATAC
* * *
15701582 ATATTTTTTTATTATTTATA
1 ATATATTATTATTATATATA
15701602 TTTTGGTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATATATTATTATTATATATAC
Found at i:15701641 original size:2 final size:2
Alignment explanation
Indices: 15701622--15701663 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
15701612 TTTTTAATAC
* *
15701622 TA TA TT TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15701664 ATTTTTAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:15701835 original size:28 final size:28
Alignment explanation
Indices: 15701796--15701859 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
15701786 ATTATATGTA
15701796 TATTTTTATTTGGTTTATATATTTAT-T
1 TATTTTTATTTGGTTTATATATTTATAT
* * *
15701823 TATTTTTGTTTTGGTTTTTTTATTTATAT
1 TATTTTT-ATTTGGTTTATATATTTATAT
15701852 TATATTTT
1 TAT-TTTT
15701860 CATATTACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 7 0.23
28 16 0.52
29 4 0.13
30 4 0.13
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.73
Consensus pattern (28 bp):
TATTTTTATTTGGTTTATATATTTATAT
Found at i:15702602 original size:18 final size:18
Alignment explanation
Indices: 15702557--15702613 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
15702547 CTTTTTTTAA
*
15702557 AATTATACATCTTAACTT
1 AATTATACATCTTAAATT
* *
15702575 AAATT-CACATATTAAATT
1 -AATTATACATCTTAAATT
15702593 AATTATACATCTTAACATT
1 AATTATACATCTTAA-ATT
15702612 AA
1 AA
15702614 AAATATATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 4 0.13
18 18 0.58
19 9 0.29
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (18 bp):
AATTATACATCTTAAATT
Found at i:15702678 original size:29 final size:29
Alignment explanation
Indices: 15702601--15702858 Score: 207
Period size: 30 Copynumber: 8.5 Consensus size: 29
15702591 TTAATTATAC
*
15702601 ATCTTAACATTAAAAATATATTTTTATTTTT
1 ATCTTAAC-TTAAAAATATA-TTTTATTCTT
* * *
15702632 ATATCAACTTATTAAATATATTTTATTCTT
1 ATCTTAACTTA-AAAATATATTTTATTCTT
*
15702662 GA-CTTAACCTAAAAATATATTTTATTCTT
1 -ATCTTAACTTAAAAATATATTTTATTCTT
* *
15702691 ATTTTAACTTAAAAATATATTTTAATCTTT
1 ATCTTAACTTAAAAATATATTTTATTC-TT
*
15702721 ATCTTAACATTAAAAATAAATTTTATTCTT
1 ATCTTAAC-TTAAAAATATATTTTATTCTT
*
15702751 ATCTTAACTTATTACATAAATAATATTTT-TAACTT
1 ATCTTAAC---TTA-A-AAAT-ATATTTTAT-TCTT
* * *
15702786 A-CTTAAATTATTAAATATATTTAATTCTT
1 ATCTTAACTTA-AAAATATATTTTATTCTT
* * * *
15702815 AACTTAACTTATTAAATATAATTAATTCTT
1 ATCTTAACTTA-AAAATATATTTTATTCTT
*
15702845 ATTTTAACTTAAAA
1 ATCTTAACTTAAAA
15702859 TTAGGCCCAT
Statistics
Matches: 188, Mismatches: 26, Indels: 28
0.78 0.11 0.12
Matches are distributed among these distances:
28 1 0.01
29 51 0.27
30 77 0.41
31 34 0.18
32 4 0.02
33 1 0.01
34 10 0.05
35 10 0.05
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (29 bp):
ATCTTAACTTAAAAATATATTTTATTCTT
Found at i:15702813 original size:64 final size:67
Alignment explanation
Indices: 15702700--15702828 Score: 169
Period size: 64 Copynumber: 2.0 Consensus size: 67
15702690 TATTTTAACT
* *
15702700 TAAAAATATATTTTAATCTTTATCTTAACATTAAAAATAAATTTTATTCTTATCTTAACTTATTA
1 TAAAAATATATTTTAATCTTTATCTTAACATTAAAAATAAATTTAATTCTTAACTTAACTTATTA
15702765 CA
66 CA
* *
15702767 TAAATAATAT-TTTTAA-C-TTA-CTTAA-ATTATTAAATATATTTAATTCTTAACTTAACTTAT
1 TAAA-AATATATTTTAATCTTTATCTTAACATTA-AAAATAAATTTAATTCTTAACTTAACTTAT
15702827 TA
64 TA
15702829 AATATAATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
63 4 0.07
64 33 0.59
65 3 0.05
66 1 0.02
67 10 0.18
68 5 0.09
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (67 bp):
TAAAAATATATTTTAATCTTTATCTTAACATTAAAAATAAATTTAATTCTTAACTTAACTTATTA
CA
Found at i:15703048 original size:22 final size:23
Alignment explanation
Indices: 15703022--15703070 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
15703012 TTTCATGAAC
*
15703022 GTTCGGTAATTCAT-TCGTTTAT
1 GTTCGCTAATTCATGTCGTTTAT
* *
15703044 GTTCGCTCATTTATGTCGTTTAT
1 GTTCGCTAATTCATGTCGTTTAT
15703067 GTTC
1 GTTC
15703071 ACTTATGTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.14, C:0.16, G:0.18, T:0.51
Consensus pattern (23 bp):
GTTCGCTAATTCATGTCGTTTAT
Found at i:15703093 original size:24 final size:24
Alignment explanation
Indices: 15703031--15703111 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
15703021 CGTTCGGTAA
* *
15703031 TTCATTCGTTTATGTTCGCTCAT-
1 TTCATTCGTTTATGTTAGCTTATG
15703054 TT-ATGTCGTTTATGTTCA-CTTATG
1 TTCAT-TCGTTTATGTT-AGCTTATG
* * *
15703078 TTCGTTCGTTTGTGTTAGTTTATG
1 TTCATTCGTTTATGTTAGCTTATG
15703102 TTCATTCGTT
1 TTCATTCGTT
15703112 AATATTCAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
22 2 0.04
23 18 0.38
24 26 0.55
25 1 0.02
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.56
Consensus pattern (24 bp):
TTCATTCGTTTATGTTAGCTTATG
Found at i:15703610 original size:30 final size:30
Alignment explanation
Indices: 15703576--15703635 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
15703566 TATTTTAGTT
*
15703576 CTACAAAAATATATTTTATTTTTATCTTAA
1 CTACAAAAATATATTATATTTTTATCTTAA
15703606 CTACAAAAATATATTATATTTTTATCTTAA
1 CTACAAAAATATATTATATTTTTATCTTAA
15703636 ATTTAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (30 bp):
CTACAAAAATATATTATATTTTTATCTTAA
Found at i:15703706 original size:30 final size:30
Alignment explanation
Indices: 15703666--15703754 Score: 117
Period size: 30 Copynumber: 3.0 Consensus size: 30
15703656 AATATAAATA
* *
15703666 TTTACTTTAAGATAAGAATAAATTATATTT
1 TTTAATTTAAGATAAGAATAAAATATATTT
* *
15703696 TTTAATTTAAGAAAAGATTAAAATATATTT
1 TTTAATTTAAGATAAGAATAAAATATATTT
* *
15703726 TTAAATTGAA-ATAAGAATAAAATATATTT
1 TTTAATTTAAGATAAGAATAAAATATATTT
15703755 AATAACTTAG
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 17 0.33
30 34 0.67
ACGTcount: A:0.49, C:0.01, G:0.07, T:0.43
Consensus pattern (30 bp):
TTTAATTTAAGATAAGAATAAAATATATTT
Found at i:15703768 original size:29 final size:29
Alignment explanation
Indices: 15703672--15703754 Score: 105
Period size: 29 Copynumber: 2.8 Consensus size: 29
15703662 AATATTTACT
* *
15703672 TTAAGATAAGAATAAATTATATTTTTTAAT
1 TTAAGATAAGAATAAAATATA-TTTTTAAA
* *
15703702 TTAAGAAAAGATTAAAATATATTTTTAAA
1 TTAAGATAAGAATAAAATATATTTTTAAA
15703731 TTGAA-ATAAGAATAAAATATATTT
1 TT-AAGATAAGAATAAAATATATTT
15703755 AATAACTTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
29 26 0.57
30 20 0.43
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (29 bp):
TTAAGATAAGAATAAAATATATTTTTAAA
Found at i:15703773 original size:29 final size:29
Alignment explanation
Indices: 15703714--15703773 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
15703704 AAGAAAAGAT
* *
15703714 TAAAATATATTTTTAAATTGAAATAAGAA
1 TAAAATATATTTATAAATTGAAATAAAAA
* *
15703743 TAAAATATATTTAATAACTT-AGATAAAAA
1 TAAAATATATTT-ATAAATTGAAATAAAAA
15703772 TA
1 TA
15703774 TTTTTTAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (29 bp):
TAAAATATATTTATAAATTGAAATAAAAA
Found at i:15704499 original size:37 final size:37
Alignment explanation
Indices: 15704458--15704567 Score: 121
Period size: 37 Copynumber: 2.9 Consensus size: 37
15704448 TATTATGCAC
* *
15704458 AACTTAAAATATTATATTTTTCCTAATATTTTAGTTG
1 AACTTAAAATATTATATTTTTCATAATATTTTACTTG
* * *
15704495 AACTTAAAATATTATCTTATTCATAATAGGTTTACTTG
1 AACTTAAAATATTATATTTTTCATAATA-TTTTACTTG
* * *
15704533 ACAATAAAAAATATTACATTTTTCATAATATTTTA
1 A-ACT-TAAAATATTATATTTTTCATAATATTTTA
15704568 TGTTAAAACG
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
37 25 0.42
38 8 0.14
39 6 0.10
40 20 0.34
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.46
Consensus pattern (37 bp):
AACTTAAAATATTATATTTTTCATAATATTTTACTTG
Found at i:15705370 original size:22 final size:22
Alignment explanation
Indices: 15705342--15705393 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
15705332 AATCTTAGCC
*
15705342 ATCAAATGGTACCTAGAGCTAG
1 ATCAAATGGTACCTAGAGCAAG
15705364 ATCAAATGGTACCTAGAGCAAG
1 ATCAAATGGTACCTAGAGCAAG
15705386 ATCAAATG
1 ATCAAATG
15705394 CTAGGGTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (22 bp):
ATCAAATGGTACCTAGAGCAAG
Found at i:15706631 original size:7 final size:7
Alignment explanation
Indices: 15706621--15706670 Score: 100
Period size: 7 Copynumber: 7.1 Consensus size: 7
15706611 TCTGTTCATA
15706621 TGTAGCC
1 TGTAGCC
15706628 TGTAGCC
1 TGTAGCC
15706635 TGTAGCC
1 TGTAGCC
15706642 TGTAGCC
1 TGTAGCC
15706649 TGTAGCC
1 TGTAGCC
15706656 TGTAGCC
1 TGTAGCC
15706663 TGTAGCC
1 TGTAGCC
15706670 T
1 T
15706671 TGAAGTTTCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.30
Consensus pattern (7 bp):
TGTAGCC
Found at i:15707586 original size:3 final size:3
Alignment explanation
Indices: 15707578--15707670 Score: 86
Period size: 3 Copynumber: 31.0 Consensus size: 3
15707568 TCATCCGCTC
*
15707578 TTA TTA TTA TTA TTA -TA TTA TTA TTA -TA TTA TTA TATA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
15707622 TATA TTA -TA CTA CTA TTA TTA TATA TGA -TA TTA TTA TATA TTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-TA TTA TTA
15707668 TTA
1 TTA
15707671 AATAATATTA
Statistics
Matches: 77, Mismatches: 5, Indels: 16
0.79 0.05 0.16
Matches are distributed among these distances:
2 7 0.09
3 58 0.75
4 12 0.16
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:15707629 original size:36 final size:33
Alignment explanation
Indices: 15707579--15707670 Score: 105
Period size: 36 Copynumber: 2.6 Consensus size: 33
15707569 CATCCGCTCT
*
15707579 TATTATTAT-TATTATATTATTATTATATTATTA
1 TATTATTATATATTATATTATTATTATA-TATGA
15707612 TATATAATTATATATTATACTACTATTATTATATATGA
1 TAT-T-ATTATATATTATA-T--TATTATTATATATGA
15707650 TATTATTATATATTATTATTA
1 TATTATTATATATTA-TATTA
15707671 AATAATATTA
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
33 3 0.06
34 3 0.06
35 5 0.10
36 19 0.37
37 4 0.08
38 7 0.14
39 10 0.20
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (33 bp):
TATTATTATATATTATATTATTATTATATATGA
Found at i:15707670 original size:31 final size:31
Alignment explanation
Indices: 15707585--15707670 Score: 95
Period size: 33 Copynumber: 2.7 Consensus size: 31
15707575 CTCTTATTAT
15707585 TATTATTATATTATTATTA-TATTATTATATA
1 TATTATTATA-TATTATTATTATTATTATATA
* *
15707616 TAATTATATATTATACTACTATTATTA-TATATGA
1 T-ATTAT-TA-TATATTATTATTATTATTATAT-A
15707650 TATTATTATATATTATTATTA
1 TATTATTATATATTATTATTA
15707671 AATAATATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
31 12 0.26
32 7 0.15
33 18 0.39
34 9 0.20
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (31 bp):
TATTATTATATATTATTATTATTATTATATA
Found at i:15708782 original size:19 final size:17
Alignment explanation
Indices: 15708758--15708800 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
15708748 AATTTTTGTA
15708758 CATTTTAATTTATTATTT
1 CATTTTAATTT-TTATTT
15708776 GCATTTT-A-TTTTATTT
1 -CATTTTAATTTTTATTT
15708792 CATTTTAAT
1 CATTTTAAT
15708801 CCATGTCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 6 0.27
16 7 0.32
17 2 0.09
18 1 0.05
19 6 0.27
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (17 bp):
CATTTTAATTTTTATTT
Found at i:15712531 original size:4 final size:4
Alignment explanation
Indices: 15712522--15712661 Score: 181
Period size: 4 Copynumber: 35.0 Consensus size: 4
15712512 GTGCAACTAC
* * *
15712522 AGAG AGAG AGAG AGAG AGGG AGAG AGAG AGAG GGAG AGAG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * *
15712570 AGGG AGAG AGAG AGAG AGGG AGGG AGAG AGAG AGAG AGGG AGAA AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * *
15712618 AGAG AGAG AGAG GGAG AGAG AGAG ATAG ATAG AGAG AGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
15712662 GGGTATAAAA
Statistics
Matches: 118, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 118 1.00
ACGTcount: A:0.45, C:0.00, G:0.54, T:0.01
Consensus pattern (4 bp):
AGAG
Found at i:15713357 original size:86 final size:86
Alignment explanation
Indices: 15713212--15713383 Score: 301
Period size: 86 Copynumber: 2.0 Consensus size: 86
15713202 TTTTTGTGAA
15713212 CACCATTTCTATATTTGTTGGTTTCATTATAGTTCCCCTGAACTTCATATTGGTTTTAATTAAGT
1 CACCATTTCTATATTTGTTGGTTTCATTATAGTTCCCCTGAACTTCATATTGGTTTTAATTAAGT
15713277 ACTTGATATTCCCTTTCCAGG
66 ACTTGATATTCCCTTTCCAGG
* *
15713298 CACCATTTCTATATTTGTTGGTTTCATTATAGTTCCCCTGAATTTTATATT-GTCTTTAATTAAG
1 CACCATTTCTATATTTGTTGGTTTCATTATAGTTCCCCTGAACTTCATATTGGT-TTTAATTAAG
*
15713362 TACTTGATGTTCCCTTTCCAGG
65 TACTTGATATTCCCTTTCCAGG
15713384 GTTATCTATG
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
85 2 0.02
86 80 0.98
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.47
Consensus pattern (86 bp):
CACCATTTCTATATTTGTTGGTTTCATTATAGTTCCCCTGAACTTCATATTGGTTTTAATTAAGT
ACTTGATATTCCCTTTCCAGG
Found at i:15715940 original size:104 final size:105
Alignment explanation
Indices: 15715819--15716020 Score: 354
Period size: 104 Copynumber: 1.9 Consensus size: 105
15715809 AACAAACAAG
*
15715819 AAAGAAAAGAAATGAAAACTTAC-AAAAATTGACTTCATTTTTGAGAAATTAAAAAAAAATAAAT
1 AAAGAAAAGAAAAGAAAACTTACAAAAAATTGACTTCATTTTTGAGAAATT-AAAAAAAATAAAT
15715883 ATCAAACGCTTTGATTTC-AAAATACATCTATATAAATAAT
65 ATCAAACGCTTTGATTTCAAAAATACATCTATATAAATAAT
* *
15715923 AAAGAAAAGAAAAGAAAACTTACAAAAAATTGATTTCATTTTTGAGAAATTAAAAAAATTAAATA
1 AAAGAAAAGAAAAGAAAACTTACAAAAAATTGACTTCATTTTTGAGAAATTAAAAAAAATAAATA
15715988 TCAAACGCTTTGATTTCAAAAATACATCTATAT
66 TCAAACGCTTTGATTTCAAAAATACATCTATAT
15716021 TAAGTAAAAT
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
104 52 0.56
105 41 0.44
ACGTcount: A:0.53, C:0.09, G:0.08, T:0.29
Consensus pattern (105 bp):
AAAGAAAAGAAAAGAAAACTTACAAAAAATTGACTTCATTTTTGAGAAATTAAAAAAAATAAATA
TCAAACGCTTTGATTTCAAAAATACATCTATATAAATAAT
Found at i:15725097 original size:136 final size:136
Alignment explanation
Indices: 15724886--15725698 Score: 1047
Period size: 136 Copynumber: 6.0 Consensus size: 136
15724876 ATTTTGATCT
* * * * * * *
15724886 CTCAAGTGAGGCATTGCTTATTCGAAGTGTTGTGAATCAAGCAATAGGTTGAATAAGTTCTTCTC
1 CTCAAGCGAGGCGTTACTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGTTCTTCTC
* * * * * *
15724951 ATTATGAACTTCTTCTCCCTCTGTCGGAGGAGCTATTCTCATTATGAACTCTCCACTGGAAATGT
66 ATTATAAACTTCTTCTCCCTCTATTGGATGAGCTATTCTCATTATGAACTCTCCATTTGAAATGT
*
15725016 CAATCC
131 TAATCC
* * * * *
15725022 CTCAAGCGAGGGGTTACTGATTGGAAGTGTTGTGAATCTAGCAATAAGTCGAACAAGTTTTTCTC
1 CTCAAGCGAGGCGTTACTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGTTCTTCTC
* * * *
15725087 ATTATAAACTTCTTCTCCCTCTATTAGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAATGT
66 ATTATAAACTTCTTCTCCCTCTATTGGATGAGCTATTCTCATTATGAACTCTCCATTTGAAATGT
*
15725152 TATTCC
131 TAATCC
* * * * * *
15725158 CTCAAGTGAGGCGTTGCTTATTCGAAGTGATGTGAATCGAGCAATAGGTCAAACAA-TCCCTTCT
1 CTCAAGCGAGGCGTTACTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGT-TCTTCT
* * * *
15725222 CATTATAAACTTTTTCTCCCTCTATTGGATGAGTTCTTCTCATTATGAACTCTCCATTTAAAATG
65 CATTATAAACTTCTTCTCCCTCTATTGGATGAGCTATTCTCATTATGAACTCTCCATTTGAAATG
15725287 TTAATCC
130 TTAATCC
* * *
15725294 CTCAAGCGTGGCATTACTGATTCAAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGTTCTTCTC
1 CTCAAGCGAGGCGTTACTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGTTCTTCTC
* * * * *
15725359 ATTATGAACTTCTTCTCCCT-TTTTCGGATGAGCT-CTCTCATTATGAACTGTTCATTTGAAATG
66 ATTATAAACTTCTTCTCCCTCTATT-GGATGAGCTATTCTCATTATGAACTCTCCATTTGAAATG
15725422 TTAATCC
130 TTAATCC
* * * *
15725429 CTCAAGTGAGGCGTTACTGATTTGAAGTGTTGTGAATCAAGCAATAGGTCGAACAAGCTCTTCTC
1 CTCAAGCGAGGCGTTACTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGTTCTTCTC
* * * * * * *
15725494 ATTATGAACTTCTTCTCCCTTTTTTGGATGAGTTATTCTTATTATGAAATCTCCATTTGAAATCT
66 ATTATAAACTTCTTCTCCCTCTATTGGATGAGCTATTCTCATTATGAACTCTCCATTTGAAATGT
15725559 TAATCC
131 TAATCC
* ** *
15725565 CTCAAGCGAGGCATTGTTGATTCGAAGTGTTGTGAATCGAGCAATAGGACGAACAAGTTCTTCTC
1 CTCAAGCGAGGCGTTACTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGTTCTTCTC
* * *
15725630 ATTATAAACTTCTTCTCCCTCTATTGGAGGAGCTTTTCTCATTATGAACTCTCTATTTGAAATGT
66 ATTATAAACTTCTTCTCCCTCTATTGGATGAGCTATTCTCATTATGAACTCTCCATTTGAAATGT
15725695 TAAT
131 TAAT
15725699 TGGTTCATCT
Statistics
Matches: 584, Mismatches: 88, Indels: 10
0.86 0.13 0.01
Matches are distributed among these distances:
135 122 0.21
136 461 0.79
137 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (136 bp):
CTCAAGCGAGGCGTTACTGATTCGAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGTTCTTCTC
ATTATAAACTTCTTCTCCCTCTATTGGATGAGCTATTCTCATTATGAACTCTCCATTTGAAATGT
TAATCC
Found at i:15725602 original size:407 final size:408
Alignment explanation
Indices: 15724886--15725698 Score: 1175
Period size: 407 Copynumber: 2.0 Consensus size: 408
15724876 ATTTTGATCT
* * * * * *
15724886 CTCAAGTGAGGCATTGCTTATTCGAAGTGTTGTGAATCAAGCAATAGGTTGAATAAGTTCTTCTC
1 CTCAAGCGAGGCATTACTGATTCAAAGTGTTGTGAATCAAGCAATAGGTCGAACAAGTTCTTCTC
*
15724951 ATTATGAACTTCTTCTCCCTCTGTCGGAGGAGCTATTCTCATTATGAACTCTCCACTGGAAATGT
66 ATTATGAACTTCTTCTCCCTCTGTCGGAGGAGCTACTCTCATTATGAACTCTCCACTGGAAATGT
* * *
15725016 CAATCCCTCAAGCGAGGGGTTACTGATTGGAAGTGTTGTGAATCTAGCAATAAGTCGAACAAGTT
131 CAATCCCTCAAGCGAGGCGTTACTGATTGGAAGTGTTGTGAATCAAGCAATAAGTCGAACAAGCT
* * * *
15725081 TTTCTCATTATAAACTTCTTCTCCCTCTATTAGATGAGTTCTTCTCATTATGAACTCTCTATTTG
196 CTTCTCATTATAAACTTCTTCTCCCTCTATTAGATGAGTTATTCTCATTATGAAATCTCCATTTG
* * * * *
15725146 AAATGTTATTCCCTCAAGTGAGGCGTTGCTTATTCGAAGTGATGTGAATCGAGCAATAGGTCAAA
261 AAATCTTAATCCCTCAAGCGAGGCATTGCTTATTCGAAGTGATGTGAATCGAGCAATAGGACAAA
* *
15725211 CAA-TCCCTTCTCATTATAAACTTTTTCTCCCTCTATTGGATGAG-TTCTTCTCATTATGAACTC
326 CAAGT-CCTTCTCATTATAAACTTCTTCTCCCTCTATTGGAGGAGCTT-TTCTCATTATGAACTC
15725274 TCCATTTAAAATGTTAATCC
389 TCCATTTAAAATGTTAATCC
* *
15725294 CTCAAGCGTGGCATTACTGATTCAAAGTGTTGTGAATCGAGCAATAGGTCGAACAAGTTCTTCTC
1 CTCAAGCGAGGCATTACTGATTCAAAGTGTTGTGAATCAAGCAATAGGTCGAACAAGTTCTTCTC
* * * * * * *
15725359 ATTATGAACTTCTTCTCCCTTTTTCGGATGAGCT-CTCTCATTATGAACTGTTCATTTGAAATGT
66 ATTATGAACTTCTTCTCCCTCTGTCGGAGGAGCTACTCTCATTATGAACTCTCCACTGGAAATGT
* * * *
15725423 TAATCCCTCAAGTGAGGCGTTACTGATTTGAAGTGTTGTGAATCAAGCAATAGGTCGAACAAGCT
131 CAATCCCTCAAGCGAGGCGTTACTGATTGGAAGTGTTGTGAATCAAGCAATAAGTCGAACAAGCT
* * * * *
15725488 CTTCTCATTATGAACTTCTTCTCCCTTTTTTGGATGAGTTATTCTTATTATGAAATCTCCATTTG
196 CTTCTCATTATAAACTTCTTCTCCCTCTATTAGATGAGTTATTCTCATTATGAAATCTCCATTTG
* *
15725553 AAATCTTAATCCCTCAAGCGAGGCATTG-TTGATTCGAAGTGTTGTGAATCGAGCAATAGGACGA
261 AAATCTTAATCCCTCAAGCGAGGCATTGCTT-ATTCGAAGTGATGTGAATCGAGCAATAGGACAA
*
15725617 ACAAGTTCTTCTCATTATAAACTTCTTCTCCCTCTATTGGAGGAGCTTTTCTCATTATGAACTCT
325 ACAAGTCCTTCTCATTATAAACTTCTTCTCCCTCTATTGGAGGAGCTTTTCTCATTATGAACTCT
* *
15725682 CTATTTGAAATGTTAAT
390 CCATTTAAAATGTTAAT
15725699 TGGTTCATCT
Statistics
Matches: 358, Mismatches: 44, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
406 2 0.01
407 265 0.74
408 91 0.25
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (408 bp):
CTCAAGCGAGGCATTACTGATTCAAAGTGTTGTGAATCAAGCAATAGGTCGAACAAGTTCTTCTC
ATTATGAACTTCTTCTCCCTCTGTCGGAGGAGCTACTCTCATTATGAACTCTCCACTGGAAATGT
CAATCCCTCAAGCGAGGCGTTACTGATTGGAAGTGTTGTGAATCAAGCAATAAGTCGAACAAGCT
CTTCTCATTATAAACTTCTTCTCCCTCTATTAGATGAGTTATTCTCATTATGAAATCTCCATTTG
AAATCTTAATCCCTCAAGCGAGGCATTGCTTATTCGAAGTGATGTGAATCGAGCAATAGGACAAA
CAAGTCCTTCTCATTATAAACTTCTTCTCCCTCTATTGGAGGAGCTTTTCTCATTATGAACTCTC
CATTTAAAATGTTAATCC
Found at i:15727339 original size:31 final size:33
Alignment explanation
Indices: 15727304--15727373 Score: 90
Period size: 34 Copynumber: 2.2 Consensus size: 33
15727294 TAACTTACAA
* *
15727304 TTCCCTAG-TTTT-TCGGGCTAAACTAGAACCT
1 TTCCCTAGCTTTTAACGGGATAAACTAGAACCT
*
15727335 TTCCCTAGCTTTTACACGGGATAAGCTAGAACCT
1 TTCCCTAGCTTTTA-ACGGGATAAACTAGAACCT
15727369 TTCCC
1 TTCCC
15727374 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 8 0.24
32 4 0.12
34 21 0.64
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (33 bp):
TTCCCTAGCTTTTAACGGGATAAACTAGAACCT
Found at i:15727756 original size:20 final size:20
Alignment explanation
Indices: 15727723--15727775 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
15727713 GCAGCCTTCG
*
15727723 TGCATGGATGCACAGCAA-GA
1 TGCATCGATGCACAG-AAGGA
*
15727743 TGCATCGATTCACAGAAGGA
1 TGCATCGATGCACAGAAGGA
15727763 TGCATCGATGCAC
1 TGCATCGATGCAC
15727776 TAAGTGCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 2 0.07
20 27 0.93
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (20 bp):
TGCATCGATGCACAGAAGGA
Found at i:15727980 original size:20 final size:20
Alignment explanation
Indices: 15727947--15727999 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
15727937 GCAGCCTTCG
*
15727947 TGCATGGATGCACAGCAA-GA
1 TGCATCGATGCACAG-AAGGA
*
15727967 TGCATCGATTCACAGAAGGA
1 TGCATCGATGCACAGAAGGA
15727987 TGCATCGATGCAC
1 TGCATCGATGCAC
15728000 TAAGTGCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 2 0.07
20 27 0.93
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (20 bp):
TGCATCGATGCACAGAAGGA
Found at i:15728011 original size:224 final size:227
Alignment explanation
Indices: 15727621--15728066 Score: 862
Period size: 224 Copynumber: 2.0 Consensus size: 227
15727611 GGATGATTTT
15727621 TCTACTCAAAAAGGCTGCCCATAACATGGTGCATCGGTGCACTATCATGGTGCATCAATACCCCT
1 TCTACTCAAAAAGGCTGCCCATAACATGGTGCATCGGTGCACTATCATGGTGCATCAATACCCCT
15727686 TCATTAAATTCAAATAAACTAGCCGTTGCAGCCTTCGTGCATGGATGCACAGCAAGATGCATCGA
66 TCATTAAATTCAAATAAACTAGCCGTTGCAGCCTTCGTGCATGGATGCACAGCAAGATGCATCGA
15727751 TTCACAGAAGGATGCATCGATGCACTAAGTGCATTCGGTG-TGAGTGCATGGATGCACTAGTGCA
131 TTCACAGAAGGATGCATCGATGCACTAAGTGCATTCGGTGTTGAGTGCATGGATGCACTAGTGCA
15727815 GGTGCATGGATGCA-TGCAT-GTGCAGATGCA
196 GGTGCATGGATGCACTGCATGGTGCAGATGCA
15727845 TCTACTCAAAAAGGCTGCCCATAACATGGTGCATCGGTGCACTATCATGGTGCATCAATACCCCT
1 TCTACTCAAAAAGGCTGCCCATAACATGGTGCATCGGTGCACTATCATGGTGCATCAATACCCCT
15727910 TCATTAAATTCAAATAAACTAGCCGTTGCAGCCTTCGTGCATGGATGCACAGCAAGATGCATCGA
66 TCATTAAATTCAAATAAACTAGCCGTTGCAGCCTTCGTGCATGGATGCACAGCAAGATGCATCGA
15727975 TTCACAGAAGGATGCATCGATGCACTAAGTGCATTCGGTGTTTGAGTGCATGGATGCACTAGTGC
131 TTCACAGAAGGATGCATCGATGCACTAAGTGCATTCGGTG-TTGAGTGCATGGATGCACTAGTGC
15728040 AGGTGCATGGATGCACTGCATGGTGCA
195 AGGTGCATGGATGCACTGCATGGTGCA
15728067 TCGATGCACT
Statistics
Matches: 218, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
224 170 0.78
226 38 0.17
227 5 0.02
228 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (227 bp):
TCTACTCAAAAAGGCTGCCCATAACATGGTGCATCGGTGCACTATCATGGTGCATCAATACCCCT
TCATTAAATTCAAATAAACTAGCCGTTGCAGCCTTCGTGCATGGATGCACAGCAAGATGCATCGA
TTCACAGAAGGATGCATCGATGCACTAAGTGCATTCGGTGTTGAGTGCATGGATGCACTAGTGCA
GGTGCATGGATGCACTGCATGGTGCAGATGCA
Found at i:15728066 original size:26 final size:22
Alignment explanation
Indices: 15728020--15728140 Score: 125
Period size: 22 Copynumber: 5.7 Consensus size: 22
15728010 CGGTGTTTGA
15728020 GTGCATGGATGCACTAGTGCAG
1 GTGCATGGATGCACTAGTGCAG
15728042 GTGCATGGATGCAC---TGCATG
1 GTGCATGGATGCACTAGTGCA-G
*
15728062 GTGCATCGATGCACTAGTGCAG
1 GTGCATGGATGCACTAGTGCAG
15728084 GTGCATGGATGCAC---TGCAGG
1 GTGCATGGATGCACTAGTGCA-G
15728104 GATGCATGGATGCAC---TGCAGGG
1 G-TGCATGGATGCACTAGTGCA--G
15728126 GTGCATGGATGCACT
1 GTGCATGGATGCACT
15728141 TTTACACCCT
Statistics
Matches: 89, Mismatches: 2, Indels: 16
0.83 0.02 0.15
Matches are distributed among these distances:
19 8 0.09
20 16 0.18
21 30 0.34
22 31 0.35
23 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.36, T:0.22
Consensus pattern (22 bp):
GTGCATGGATGCACTAGTGCAG
Found at i:15728066 original size:42 final size:42
Alignment explanation
Indices: 15728020--15728140 Score: 176
Period size: 42 Copynumber: 2.9 Consensus size: 42
15728010 CGGTGTTTGA
*
15728020 GTGCATGGATGCACTAGTGCAGGTGCATGGATGCACTGCATG
1 GTGCATGGATGCACTAGTGCAGGTGCATGGATGCACTGCAGG
*
15728062 GTGCATCGATGCACTAGTGCAGGTGCATGGATGCACTGCAGG
1 GTGCATGGATGCACTAGTGCAGGTGCATGGATGCACTGCAGG
15728104 GATGCATGGATGCAC---TGCAGGGGTGCATGGATGCACT
1 G-TGCATGGATGCACTAGTGCA--GGTGCATGGATGCACT
15728141 TTTACACCCT
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
40 4 0.05
42 57 0.78
43 12 0.16
ACGTcount: A:0.21, C:0.20, G:0.36, T:0.22
Consensus pattern (42 bp):
GTGCATGGATGCACTAGTGCAGGTGCATGGATGCACTGCAGG
Found at i:15728111 original size:21 final size:19
Alignment explanation
Indices: 15728020--15728140 Score: 134
Period size: 21 Copynumber: 5.8 Consensus size: 19
15728010 CGGTGTTTGA
15728020 GTGCATGGATGCACTAGTGCAG
1 GTGCATGGATGCAC---TGCAG
15728042 GTGCATGGATGCACTGCATG
1 GTGCATGGATGCACTGCA-G
*
15728062 GTGCATCGATGCACTAGTGCAG
1 GTGCATGGATGCAC---TGCAG
15728084 GTGCATGGATGCACTGCAGG
1 GTGCATGGATGCACTGCA-G
15728104 GATGCATGGATGCACTGCAGGG
1 G-TGCATGGATGCACTGCA--G
15728126 GTGCATGGATGCACT
1 GTGCATGGATGCACT
15728141 TTTACACCCT
Statistics
Matches: 90, Mismatches: 2, Indels: 15
0.84 0.02 0.14
Matches are distributed among these distances:
19 8 0.09
20 16 0.18
21 31 0.34
22 31 0.34
23 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.36, T:0.22
Consensus pattern (19 bp):
GTGCATGGATGCACTGCAG
Found at i:15729592 original size:19 final size:20
Alignment explanation
Indices: 15729549--15729596 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
15729539 TCTAAATCCT
*
15729549 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
15729569 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
15729588 TTTTCAAAA
1 TTTTCAAAA
15729597 GAAAATCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:15730916 original size:20 final size:20
Alignment explanation
Indices: 15730887--15730939 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
15730877 GCAGCCTTCG
*
15730887 TGCATGGATGCACAGAAGAA
1 TGCATCGATGCACAGAAGAA
*
15730907 TGCATCGATGCACAGAAGGA
1 TGCATCGATGCACAGAAGAA
15730927 TGCATCGATGCAC
1 TGCATCGATGCAC
15730940 TAACTGTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.17
Consensus pattern (20 bp):
TGCATCGATGCACAGAAGAA
Found at i:15731007 original size:22 final size:23
Alignment explanation
Indices: 15730974--15731016 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
15730964 ATGGATGCAC
15730974 TGCATGGTGCATCGATGCACTAG
1 TGCATGGTGCATCGATGCACTAG
*
15730997 TGCA-GGTGCATGGATGCACT
1 TGCATGGTGCATCGATGCACT
15731017 GTAGGGATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (23 bp):
TGCATGGTGCATCGATGCACTAG
Found at i:15731029 original size:21 final size:20
Alignment explanation
Indices: 15730960--15731056 Score: 106
Period size: 21 Copynumber: 4.7 Consensus size: 20
15730950 CGGTGTTTGA
* *
15730960 GTGCATGGATGCACTGCATG
1 GTGCATGGATGCACTGTAGG
*
15730980 GTGCATCGATGCACTAGT-GCAG
1 GTGCATGGATGCACT-GTAG--G
15731002 GTGCATGGATGCACTGTAGG
1 GTGCATGGATGCACTGTAGG
*
15731022 GATGCATGAATGCACTGTAGG
1 G-TGCATGGATGCACTGTAGG
15731043 GATGCATGGATGCA
1 G-TGCATGGATGCA
15731057 ATTTGACACC
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
20 16 0.24
21 34 0.52
22 16 0.24
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.24
Consensus pattern (20 bp):
GTGCATGGATGCACTGTAGG
Found at i:15731170 original size:29 final size:31
Alignment explanation
Indices: 15731138--15731196 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
15731128 AAACTTTGAA
*
15731138 TAAATTCAATT-AAGTCCAAAAA-CATTTTT
1 TAAATTCAATTCAAGCCCAAAAACCATTTTT
*
15731167 TAAATTTAATTCAAGCCCAAAAACCATTTT
1 TAAATTCAATTCAAGCCCAAAAACCATTTT
15731197 GCCTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 10 0.38
30 10 0.38
31 6 0.23
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (31 bp):
TAAATTCAATTCAAGCCCAAAAACCATTTTT
Found at i:15735127 original size:81 final size:81
Alignment explanation
Indices: 15734992--15735476 Score: 713
Period size: 81 Copynumber: 6.0 Consensus size: 81
15734982 AGGCCATTAA
* *
15734992 TCAAAGGTATTTAACCTTTCATCTAACTGGAATAATTGACACCTTTCTGTCAAATGCACAACTAG
1 TCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAACTAG
15735057 GCCATTAATATTTTAC
66 GCCATTAATATTTTAC
* * * *
15735073 TCAAAGGTATTAAACCTTTCATCTAATTGGCATAATTAACACATTTCTGTCAAATGTACAACTAG
1 TCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAACTAG
*
15735138 GTCATTAATATTTTAC
66 GCCATTAATATTTTAC
* * * *
15735154 TCAAAGGTATTAAACCTTTCATCTAATTGGCATAATTAACACATTTCTGTCAAATGTACAACTAG
1 TCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAACTAG
15735219 GCCATTAATATTTTAC
66 GCCATTAATATTTTAC
15735235 TCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAACTAG
1 TCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAACTAG
*
15735300 GCCATTAATCTTTTAC
66 GCCATTAATATTTTAC
* * * * * **
15735316 TCAAAGATATTTAACCTTTCATCTAACTAGCATAATTGACACCA-GTCTATCAAATACACATTTA
1 TCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CATTTCTGTCAAATGCACAACTA
15735380 GGCCATTAATATTTTAC
65 GGCCATTAATATTTTAC
* **
15735397 TCAAAGGTATTTAACCTTTCATCTAATTGGCATAATTGACATTTTTCTGT-AAATTGCACAACTA
1 TCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAA-TGCACAACTA
** *
15735461 GGTTATTAATCTTTTA
65 GGCCATTAATATTTTA
15735477 TTTTAGAATA
Statistics
Matches: 367, Mismatches: 34, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
80 3 0.01
81 362 0.99
82 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (81 bp):
TCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAACTAG
GCCATTAATATTTTAC
Found at i:15735237 original size:162 final size:162
Alignment explanation
Indices: 15734887--15735476 Score: 804
Period size: 162 Copynumber: 3.7 Consensus size: 162
15734877 AGCTTCCTGC
* * * *
15734887 CAAATACACAGCTAGGCTATTAATACTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGAAT
1 CAAATGCACAACTAGGCCATTAATA-TTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCAT
* *
15734952 AATTGACACCTTTCTGCCAAATGCACAACTAGGCCA-T--TA----A-TCAAAGGTATTTAACCT
65 AATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCT
* *
15735009 TTCATCTAACTGGAATAATTGACACCTTTCTGT
130 TTCATCTAACTGGCATAATTGACACATTTCTGT
* *
15735042 CAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTAAACCTTTCATCTAATTGGCATA
1 CAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATA
* * * *
15735107 ATTAACACATTTCTGTCAAATGTACAACTAGGTCATTAATATTTTACTCAAAGGTATTAAACCTT
66 ATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTT
* *
15735172 TCATCTAATTGGCATAATTAACACATTTCTGT
131 TCATCTAACTGGCATAATTGACACATTTCTGT
*
15735204 CAAATGTACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATA
1 CAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATA
* *
15735269 ATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATCTTTTACTCAAAGATATTTAACCTT
66 ATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTT
* * *
15735334 TCATCTAACTAGCATAATTGACACCA-GTCTAT
131 TCATCTAACTGGCATAATTGACA-CATTTCTGT
* ** *
15735366 CAAATACACATTTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATA
1 CAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATA
** ** *
15735431 ATTGACATTTTTCTGT-AAATTGCACAACTAGGTTATTAATCTTTTA
66 ATTGACACATTTCTGTCAAA-TGCACAACTAGGCCATTAATATTTTA
15735477 TTTTAGAATA
Statistics
Matches: 386, Mismatches: 39, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
154 67 0.17
155 23 0.06
157 2 0.01
161 4 0.01
162 288 0.75
163 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.35
Consensus pattern (162 bp):
CAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATA
ATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTT
TCATCTAACTGGCATAATTGACACATTTCTGT
Found at i:15735334 original size:243 final size:242
Alignment explanation
Indices: 15734887--15735477 Score: 822
Period size: 243 Copynumber: 2.5 Consensus size: 242
15734877 AGCTTCCTGC
* * * *
15734887 CAAATACACAGCTAGGCTATTAATACTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGAAT
1 CAAATACACAACTAGGCCATTAATA-TTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCAT
* *
15734952 AATTGACACCTTTCTGCCAAATGCACAACTAGGCCA-T--TA----ATCAAAGGTATTTAACCTT
65 AATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTATCAAAGGTATTTAACCTT
*
15735010 TCATCTAACTGGAATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAATATTTTACTC
130 TCATCTAACTGGAATAATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTACTC
* * * * *
15735075 AAAGGTATTAAACCTTTCATCTAATTGGCATAATTAACA-CATTTCTGT
195 AAAGATATTAAACCTTTCATCTAACTAGCATAATTAACACCA-GTCTAT
** * *
15735123 CAAATGTACAACTAGGTCATTAATATTTTACTCAAAGGTATTAAACCTTTCATCTAATTGGCATA
1 CAAATACACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATA
* *
15735188 ATTAACACATTTCTGTCAAATGTACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTT
66 ATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTA-TCAAAGGTATTTAACCTT
* *
15735253 TCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATCTTTTACTC
130 TCATCTAACTGGAATAATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTACTC
* *
15735318 AAAGATATTTAACCTTTCATCTAACTAGCATAATTGACACCAGTCTAT
195 AAAGATATTAAACCTTTCATCTAACTAGCATAATTAACACCAGTCTAT
**
15735366 CAAATACACATTTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATA
1 CAAATACACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATA
** ** *
15735431 ATTGACATTTTTCTGT-AAATTGCACAACTAGGTTATTAATCTTTTAT
66 ATTGACACATTTCTGTCAAA-TGCACAACTAGGCCATTAATATTTTAT
15735478 TTTAGAATAG
Statistics
Matches: 310, Mismatches: 35, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
235 68 0.22
236 21 0.07
238 2 0.01
242 5 0.02
243 212 0.68
244 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (242 bp):
CAAATACACAACTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATA
ATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTATCAAAGGTATTTAACCTTT
CATCTAACTGGAATAATTGACACATTTCTGTCAAATGCACAACTAGGCCATTAATATTTTACTCA
AAGATATTAAACCTTTCATCTAACTAGCATAATTAACACCAGTCTAT
Found at i:15741185 original size:22 final size:22
Alignment explanation
Indices: 15741160--15741206 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
15741150 TTCTCTCTAT
* *
15741160 TTTCTCTGTTGGTTGGTTGTTG
1 TTTCTCTATTGCTTGGTTGTTG
15741182 TTTCTCTATTGCTTGGTTGTTG
1 TTTCTCTATTGCTTGGTTGTTG
15741204 TTT
1 TTT
15741207 TCTTACTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.02, C:0.11, G:0.26, T:0.62
Consensus pattern (22 bp):
TTTCTCTATTGCTTGGTTGTTG
Found at i:15742076 original size:36 final size:36
Alignment explanation
Indices: 15742010--15742114 Score: 174
Period size: 36 Copynumber: 2.9 Consensus size: 36
15742000 TGATCAGATC
15742010 TTGCTTCACTACTCTTTTGGTGAAGGCTTGATTTGCA
1 TTGCTTCACTACTCTTTT-GTGAAGGCTTGATTTGCA
*
15742047 TTGCTTTACTACTCTTTTGTGAAGGCTTGATTTGCA
1 TTGCTTCACTACTCTTTTGTGAAGGCTTGATTTGCA
* *
15742083 TTTCTTCAATACTCTTTTGTGAAGGCTTGATT
1 TTGCTTCACTACTCTTTTGTGAAGGCTTGATT
15742115 AACTTGAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 47 0.73
37 17 0.27
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.47
Consensus pattern (36 bp):
TTGCTTCACTACTCTTTTGTGAAGGCTTGATTTGCA
Found at i:15751477 original size:342 final size:339
Alignment explanation
Indices: 15750855--15751535 Score: 1335
Period size: 342 Copynumber: 2.0 Consensus size: 339
15750845 TATCCACATG
15750855 CCCCAGAATATTTGGGAAAATGATTAATCCATAAATTTCTAAGGCCAACATATCAACCTGCTTCC
1 CCCCAGAATATTTGGGAAAATGATTAATCCATAAATTTCTAAGGCCAACATATCAACCTGCTTCC
15750920 TTTTGTCAGGATGGTGGTAGATTACTTCTTTCAAGGATCCAAGTAATGCATCACTGTCATCCTTT
66 TTTTGTCAGGATGGTGGTAGATTACTTCTTTCAAGGATCCAAGTAATGCATCACTGTCATCCTTT
15750985 TTCTTGATATGTCTAGTAGCTCATTCTTCACTCGTCCCGGTCAATAAGAGCACTTTCTTCTTGAA
131 TTCTTGATATGTCTAGTAGCTCATTCTTCACTCGTCCCGGTCAATAAGAGCACTTTCTTCTTGAA
15751050 AGGAGTAGTGTTAGGTGACTTGATATATACTCTGTCTTCGTAAATTCATGGACAGCAGATAAGAG
196 AGGAGTAGTGTTAGGTGACTTGATATATACTCTGTCTTCGTAAATTCATGGACAGCAGATAAGAG
15751115 CTCGATATTCTTCTATAGTTGGTGTCAAATCTACCTTGCCAAAAGTGAAGCAACTGTAAGCAGGG
261 CTCGATATTCTTCTATAGTTGGTGTCAAATCTACCTTGCCAAAAGTGAAGCAACTGTAAGCAGGG
15751180 TTCTAAAACTGTGA
326 TTCTAAAACTGTGA
15751194 CCCCAGAATATTTGGGAAAATGATTAATCCATAAATTTCTAAGGCCAACATATCAACCTGCTTCC
1 CCCCAGAATATTTGGGAAAATGATTAATCCATAAATTTCTAAGGCCAACATATCAACCTGCTTCC
15751259 TTTTGTCAGGATGGTGGTAGATTACTTCTTTCAAGGCATCCCAAGTAATGCATTCACTGTCATCC
66 TTTTGTCAGGATGGTGGTAGATTACTTCTTTCAAGG-AT-CCAAGTAATGCA-TCACTGTCATCC
15751324 TTTTTCTTGATATGTCTAGTAGCTCATTCTTCACTCGTCCCGGTCAATAAGAGCACTTTCTTCTT
128 TTTTTCTTGATATGTCTAGTAGCTCATTCTTCACTCGTCCCGGTCAATAAGAGCACTTTCTTCTT
15751389 GAAAGGAGTAGTGTTAGGTGACTTGATATATACTCTGTCTTCGTAAATTCATGGACAGCAGATAA
193 GAAAGGAGTAGTGTTAGGTGACTTGATATATACTCTGTCTTCGTAAATTCATGGACAGCAGATAA
15751454 GAGCTCGATATTCTTCTATAGTTGGTGTCAAATCTACCTTGCCAAAAGTGAAGCAACTGTAAGCA
258 GAGCTCGATATTCTTCTATAGTTGGTGTCAAATCTACCTTGCCAAAAGTGAAGCAACTGTAAGCA
15751519 GGGTTCTAAAACTGTGA
323 GGGTTCTAAAACTGTGA
15751536 TAGGGCTCTG
Statistics
Matches: 339, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
339 101 0.30
340 2 0.01
341 12 0.04
342 224 0.66
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (339 bp):
CCCCAGAATATTTGGGAAAATGATTAATCCATAAATTTCTAAGGCCAACATATCAACCTGCTTCC
TTTTGTCAGGATGGTGGTAGATTACTTCTTTCAAGGATCCAAGTAATGCATCACTGTCATCCTTT
TTCTTGATATGTCTAGTAGCTCATTCTTCACTCGTCCCGGTCAATAAGAGCACTTTCTTCTTGAA
AGGAGTAGTGTTAGGTGACTTGATATATACTCTGTCTTCGTAAATTCATGGACAGCAGATAAGAG
CTCGATATTCTTCTATAGTTGGTGTCAAATCTACCTTGCCAAAAGTGAAGCAACTGTAAGCAGGG
TTCTAAAACTGTGA
Found at i:15753169 original size:19 final size:18
Alignment explanation
Indices: 15753146--15753190 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
15753136 ATAATTCAAA
15753146 ATAATATTAAATTACTAT
1 ATAATATTAAATTACTAT
*
15753164 ACTAATA--AAATTATTAT
1 A-TAATATTAAATTACTAT
15753181 ATAA-ATTAAA
1 ATAATATTAAA
15753191 ATGTAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
15 1 0.04
16 3 0.13
17 13 0.57
18 1 0.04
19 5 0.22
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATATTAAATTACTAT
Found at i:15754287 original size:20 final size:17
Alignment explanation
Indices: 15754199--15754277 Score: 63
Period size: 17 Copynumber: 4.6 Consensus size: 17
15754189 TTTAATAATA
15754199 ATAATAATAATATAAAT
1 ATAATAATAATATAAAT
* *
15754216 ATAAT-ATAATATTTATT
1 ATAATAATAATA-TAAAT
* * * *
15754233 ATAATTATTACGTCTATA-
1 ATAA-TAATA-ATATAAAT
15754251 ATAATAATAATATAAAT
1 ATAATAATAATATAAAT
15754268 ATAATAATAA
1 ATAATAATAA
15754278 GTGCATAAAT
Statistics
Matches: 45, Mismatches: 12, Indels: 10
0.67 0.18 0.15
Matches are distributed among these distances:
16 10 0.22
17 26 0.58
18 5 0.11
19 3 0.07
20 1 0.02
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (17 bp):
ATAATAATAATATAAAT
Found at i:15765612 original size:16 final size:18
Alignment explanation
Indices: 15765591--15765625 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15765581 GGGAAAAGGG
15765591 GAAGGGA-GA-AGGGGGA
1 GAAGGGAGGAGAGGGGGA
15765607 GAAGGGAGGAGAGGGGGA
1 GAAGGGAGGAGAGGGGGA
15765625 G
1 G
15765626 GGGAGCACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 2 0.12
18 8 0.47
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (18 bp):
GAAGGGAGGAGAGGGGGA
Found at i:15766461 original size:15 final size:15
Alignment explanation
Indices: 15766441--15766478 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
15766431 CTTTCTTAGC
15766441 ATTATCATATATATT
1 ATTATCATATATATT
15766456 ATTATCATATATATT
1 ATTATCATATATATT
15766471 ATTATCAT
1 ATTATCAT
15766479 TATCTCTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTATCATATATATT
Found at i:15766773 original size:21 final size:21
Alignment explanation
Indices: 15766747--15766815 Score: 129
Period size: 21 Copynumber: 3.3 Consensus size: 21
15766737 ATAATGTCCA
15766747 TAAGGACCACATATCATTCCT
1 TAAGGACCACATATCATTCCT
*
15766768 TAAGGACCACATATCATTCCA
1 TAAGGACCACATATCATTCCT
15766789 TAAGGACCACATATCATTCCT
1 TAAGGACCACATATCATTCCT
15766810 TAAGGA
1 TAAGGA
15766816 TCATATACAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (21 bp):
TAAGGACCACATATCATTCCT
Found at i:15769366 original size:25 final size:25
Alignment explanation
Indices: 15769332--15769390 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
15769322 TGTCACATTT
*
15769332 ATATTTTTTTATTTTAAAAAATAAA
1 ATATTATTTTATTTTAAAAAATAAA
15769357 ATATTATTTTATTTTAAAAAATAAA
1 ATATTATTTTATTTTAAAAAATAAA
15769382 ATATTATTT
1 ATATTATTT
15769391 AAAAATATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
ATATTATTTTATTTTAAAAAATAAA
Found at i:15776633 original size:22 final size:24
Alignment explanation
Indices: 15776608--15776658 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
15776598 TTAAATAAAT
15776608 AAATAA-TAAAACATTTA-TCTAA
1 AAATAATTAAAACATTTATTCTAA
* *
15776630 AAATAATTAAAATATTTATTTTAA
1 AAATAATTAAAACATTTATTCTAA
15776654 AAATA
1 AAATA
15776659 TCAGAAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 6 0.24
23 10 0.40
24 9 0.36
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
AAATAATTAAAACATTTATTCTAA
Found at i:15776790 original size:43 final size:44
Alignment explanation
Indices: 15776736--15776819 Score: 118
Period size: 43 Copynumber: 1.9 Consensus size: 44
15776726 CTAAAATAAT
*
15776736 ATATATAATATATATATATAAT-TTAAAATATTTATGTAAAAATA
1 ATATATAATATA-ATATATAATAATAAAATATTTATGTAAAAATA
* *
15776780 ATATAT-ATATAATTTATAATAATAAAATATTTATTTAAAA
1 ATATATAATATAATATATAATAATAAAATATTTATGTAAAA
15776820 TATATCAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 8 0.22
43 22 0.61
44 6 0.17
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (44 bp):
ATATATAATATAATATATAATAATAAAATATTTATGTAAAAATA
Found at i:15778314 original size:3 final size:3
Alignment explanation
Indices: 15778306--15778374 Score: 102
Period size: 3 Copynumber: 22.7 Consensus size: 3
15778296 ATTTTTGTTA
*
15778306 AAT AAT AAT AAT AAT ATAT AAT AAT AAT ACT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
**
15778352 AAT TTT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
15778375 AACGAAATGA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
3 56 0.95
4 3 0.05
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:15778702 original size:76 final size:76
Alignment explanation
Indices: 15778505--15779448 Score: 1602
Period size: 76 Copynumber: 12.4 Consensus size: 76
15778495 GAAATGTTAA
** * * * *
15778505 AAACATCATGCACTAAAGGGCTTACAGATGACCCTAAGGTTTTGAAAATATCAAAAAGATCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
15778570 AGGCTTTTTTGA
66 AGGC-TTTTTGG
* *
15778582 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGTTTTGAAAATATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
15778647 AGGCTTTTTGG
66 AGGCTTTTTGG
*
15778658 AAACATCATGCACTGTAGGACTTATAGATGACCCTAAGGCTTTGAAAACATCAAAAAAGCTCCCG
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATC-AAAAAGCTCCCG
15778723 AAGGCTTTTTGG
65 AAGGCTTTTTGG
* *
15778735 AAACATCATGCACTGTAGGACCTATAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
15778800 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
15778811 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAGAGCTCCTGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
15778876 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
15778887 AAACATCATGCACTGTAGGACTTA-AGAATGACCCTAAGGCTTTGAAAACATCAAAAAACTCTCG
1 AAACATCATGCACTGTAGGACTTACAG-ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCG
15778951 AAGGCTTTTTGG
65 AAGGCTTTTTGG
* * *
15778963 AAACATCATGCACTGTAGGACTTACATATGACCCTAAGTCTTTGAAAACATCAAAAAGCTCCTGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
15779028 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
15779039 AAACATCATGTACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAATATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
15779104 AGGGTTTTTGG
66 AGGCTTTTTGG
* * *
15779115 AAACATTATGCACTGTAGGACTTAAAGATAACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
15779180 AGGCTTTTTGG
66 AGGCTTTTTGG
*
15779191 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATTAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
15779256 AGGCTTTTTGG
66 AGGCTTTTTGG
*
15779267 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCAGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
15779332 AGGCTTTTTGG
66 AGGCTTTTTGG
*
15779343 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCTGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
15779408 AGGCTTTTTGG
66 AGGCTTTTTGG
15779419 AAACATCATGCACTGTAGGACTTACAGATG
1 AAACATCATGCACTGTAGGACTTACAGATG
15779449 TGGGAAATAG
Statistics
Matches: 823, Mismatches: 41, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
75 2 0.00
76 680 0.83
77 141 0.17
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (76 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:15780144 original size:22 final size:22
Alignment explanation
Indices: 15780119--15780197 Score: 113
Period size: 22 Copynumber: 3.6 Consensus size: 22
15780109 CATAAAGCTT
15780119 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* * *
15780141 TCATCTTTAAAAATAGAATATA
1 TCATCTTTGAAAAGAGAATCTA
* *
15780163 TCATATTTGAAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
15780185 TCATCTTTGAAAA
1 TCATCTTTGAAAA
15780198 ATGTAGATGT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:15784892 original size:15 final size:15
Alignment explanation
Indices: 15784874--15784918 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
15784864 TTTTTTTCTT
15784874 TTTTTTTCCTTTTTG
1 TTTTTTTCCTTTTTG
* *
15784889 TTTTTTTCCTTCTTC
1 TTTTTTTCCTTTTTG
15784904 TTTTTCTT-CTTTTTG
1 TTTTT-TTCCTTTTTG
15784919 CACCTTTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 23 0.92
16 2 0.08
ACGTcount: A:0.00, C:0.18, G:0.04, T:0.78
Consensus pattern (15 bp):
TTTTTTTCCTTTTTG
Found at i:15784906 original size:21 final size:21
Alignment explanation
Indices: 15784856--15784917 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 21
15784846 CTTGATTCAA
15784856 TTTTCCTT-TT-TTTTTCTTT
1 TTTTCCTTCTTCTTTTTCTTT
*
15784875 TTTT--TTC--CTTTTTGTTT
1 TTTTCCTTCTTCTTTTTCTTT
15784892 TTTTCCTTCTTCTTTTTCTTCT
1 TTTTCCTTCTTCTTTTTCTT-T
15784914 TTTT
1 TTTT
15784918 GCACCTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
17 14 0.41
19 7 0.21
21 8 0.24
22 5 0.15
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.81
Consensus pattern (21 bp):
TTTTCCTTCTTCTTTTTCTTT
Found at i:15789773 original size:9 final size:9
Alignment explanation
Indices: 15789761--15789785 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
15789751 GAAAATAAAG
15789761 TAAATATAA
1 TAAATATAA
15789770 TAAATATAA
1 TAAATATAA
15789779 TAAATAT
1 TAAATAT
15789786 TATGAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
TAAATATAA
Found at i:15790439 original size:22 final size:24
Alignment explanation
Indices: 15790414--15790464 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
15790404 TTAAATAAAT
15790414 AAATAA-TAAAACATTTA-TCTAA
1 AAATAATTAAAACATTTATTCTAA
* *
15790436 AAATAATTAAAATATTTATTTTAA
1 AAATAATTAAAACATTTATTCTAA
15790460 AAATA
1 AAATA
15790465 TCATAAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 6 0.24
23 10 0.40
24 9 0.36
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
AAATAATTAAAACATTTATTCTAA
Found at i:15790524 original size:13 final size:12
Alignment explanation
Indices: 15790506--15790582 Score: 50
Period size: 13 Copynumber: 6.2 Consensus size: 12
15790496 TGCCCTTTCT
15790506 TATTAAAAATAAA
1 TATT-AAAATAAA
15790519 TATTAAAATAAA
1 TATTAAAATAAA
*
15790531 -ACTAAAATAATA
1 TATTAAAATAA-A
* *
15790543 TATATATAATATA
1 TAT-TAAAATAAA
* *
15790556 TATATATAATATA
1 TAT-TAAAATAAA
*
15790569 T-TTAAAAAAAA
1 TATTAAAATAAA
15790580 TAT
1 TAT
15790583 ATATAATTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
11 16 0.30
12 11 0.21
13 20 0.38
14 6 0.11
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (12 bp):
TATTAAAATAAA
Found at i:15790551 original size:11 final size:11
Alignment explanation
Indices: 15790537--15790569 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
15790527 TAAAACTAAA
15790537 ATAATATATAT
1 ATAATATATAT
15790548 ATAATATATAT
1 ATAATATATAT
15790559 AT-ATA-ATAT
1 ATAATATATAT
15790568 AT
1 AT
15790570 TTAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 6 0.27
10 3 0.14
11 13 0.59
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
ATAATATATAT
Found at i:15790564 original size:24 final size:24
Alignment explanation
Indices: 15790537--15790606 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
15790527 TAAAACTAAA
*
15790537 ATAATATATATATAATATATATAT
1 ATAATATATATATAATAAATATAT
* * *
15790561 ATAATATATTTAAAAAAAATATAT
1 ATAATATATATATAATAAATATAT
*
15790585 ATAATTTATA-ATAATAAA-ATAT
1 ATAATATATATATAATAAATATAT
15790607 TTATTTAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
22 4 0.11
23 6 0.16
24 28 0.74
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
ATAATATATATATAATAAATATAT
Found at i:15790607 original size:37 final size:38
Alignment explanation
Indices: 15790533--15790609 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 38
15790523 AAAATAAAAC
* *
15790533 TAAAATAATATATATATAATATATATATATAATATATT
1 TAAAATAAAATATATATAATATATATATATAAAATATT
*
15790571 TAAAA-AAAATATATATAATTTATA-ATAATAAAATATT
1 TAAAATAAAATATATATAATATATATAT-ATAAAATATT
15790608 TA
1 TA
15790610 TTTAAAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 2 0.06
37 28 0.80
38 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (38 bp):
TAAAATAAAATATATATAATATATATATATAAAATATT
Found at i:15790900 original size:17 final size:17
Alignment explanation
Indices: 15790873--15790913 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
15790863 AATGGTCATA
*
15790873 TTTATTTAATTATTTTCT
1 TTTA-TTAATTATTATCT
*
15790891 TTTATTAATTCTTATCT
1 TTTATTAATTATTATCT
15790908 TTTATT
1 TTTATT
15790914 TTAAAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTATTAATTATTATCT
Found at i:15791102 original size:38 final size:38
Alignment explanation
Indices: 15791052--15791159 Score: 109
Period size: 38 Copynumber: 2.9 Consensus size: 38
15791042 TTCCCACTCC
*
15791052 TTTT-TTATTTTTATTTTCTCTTTTAACATTTTTTTTA
1 TTTTATTATTTTTATTTTCTCTTTTAACATTTTTTTCA
** * *
15791089 TTTTATTATTTTTATTTTCTGAAATTTAATATTTTCTTCA
1 TTTTATTATTTTTATTTTCT--CTTTTAACATTTTTTTCA
*
15791129 -TTTATT-TTATT-TTTT-TCTTTTAACATTTTTT
1 TTTTATTATTTTTATTTTCTCTTTTAACATTTTTT
15791160 ACATAACATT
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
34 11 0.19
36 1 0.02
37 8 0.14
38 19 0.33
39 6 0.10
40 13 0.22
ACGTcount: A:0.19, C:0.07, G:0.01, T:0.72
Consensus pattern (38 bp):
TTTTATTATTTTTATTTTCTCTTTTAACATTTTTTTCA
Found at i:15791166 original size:14 final size:14
Alignment explanation
Indices: 15791149--15791187 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
15791139 TTTTTTCTTT
15791149 TAACATTTTTTACA
1 TAACATTTTTTACA
15791163 TAACATTTTTTACA
1 TAACATTTTTTACA
15791177 TAACATTTTTT
1 TAACATTTTTT
15791188 TAAAATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (14 bp):
TAACATTTTTTACA
Found at i:15800185 original size:22 final size:22
Alignment explanation
Indices: 15800157--15800199 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
15800147 GCTCATAAAG
15800157 AATGAATTAAAGAGAGATACAT
1 AATGAATTAAAGAGAGATACAT
15800179 AATGAATTAAAGAGAGATACA
1 AATGAATTAAAGAGAGATACA
15800200 ATAAGCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.56, C:0.05, G:0.19, T:0.21
Consensus pattern (22 bp):
AATGAATTAAAGAGAGATACAT
Found at i:15803356 original size:10 final size:11
Alignment explanation
Indices: 15803343--15803424 Score: 57
Period size: 10 Copynumber: 7.4 Consensus size: 11
15803333 GTTCGTGAAC
15803343 GTTCGGTTT-T
1 GTTCGGTTTAT
15803353 GTTC-GTTTAT
1 GTTCGGTTTAT
*
15803363 GTTCGTTCGATTAT
1 GTTCG---GTTTAT
15803377 GTTC-GTTTAT
1 GTTCGGTTTAT
*
15803387 GTTCGTTCGATTAT
1 GTTCG---GTTTAT
15803401 GTTC-GTTTAT
1 GTTCGGTTTAT
15803411 GTTC-GTTTAT
1 GTTCGGTTTAT
15803421 GTTC
1 GTTC
15803425 ATTCGTTTAT
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
9 4 0.07
10 37 0.63
14 18 0.31
ACGTcount: A:0.10, C:0.12, G:0.22, T:0.56
Consensus pattern (11 bp):
GTTCGGTTTAT
Found at i:15803369 original size:24 final size:24
Alignment explanation
Indices: 15803342--15803417 Score: 134
Period size: 24 Copynumber: 3.2 Consensus size: 24
15803332 CGTTCGTGAA
* *
15803342 CGTTCGGTTTTGTTCGTTTATGTT
1 CGTTCGATTATGTTCGTTTATGTT
15803366 CGTTCGATTATGTTCGTTTATGTT
1 CGTTCGATTATGTTCGTTTATGTT
15803390 CGTTCGATTATGTTCGTTTATGTT
1 CGTTCGATTATGTTCGTTTATGTT
15803414 CGTT
1 CGTT
15803418 TATGTTCATT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.09, C:0.13, G:0.22, T:0.55
Consensus pattern (24 bp):
CGTTCGATTATGTTCGTTTATGTT
Found at i:15803370 original size:14 final size:14
Alignment explanation
Indices: 15803353--15803451 Score: 71
Period size: 14 Copynumber: 6.9 Consensus size: 14
15803343 GTTCGGTTTT
15803353 GTTCGTTTATGTTC
1 GTTCGTTTATGTTC
*
15803367 GTTCGATTA---T-
1 GTTCGTTTATGTTC
15803377 GTTCGTTTATGTTC
1 GTTCGTTTATGTTC
*
15803391 GTTCGATTATGTTC
1 GTTCGTTTATGTTC
15803405 GTTTATGTTCGTTTATGTTC
1 ------GTTCGTTTATGTTC
*
15803425 ATTCGTTTATGTTC
1 GTTCGTTTATGTTC
* *
15803439 ATTCATTTATGTT
1 GTTCGTTTATGTT
15803452 TAAGCCAATC
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
10 8 0.12
11 1 0.01
13 1 0.01
14 46 0.67
20 13 0.19
ACGTcount: A:0.13, C:0.12, G:0.18, T:0.57
Consensus pattern (14 bp):
GTTCGTTTATGTTC
Found at i:15803405 original size:34 final size:34
Alignment explanation
Indices: 15803367--15803438 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
15803357 GTTTATGTTC
*
15803367 GTTCGATTATGTTCGTTTATGTTCGTTCGATTAT
1 GTTCGATTATGTTCGTTTATGTTCATTCGATTAT
* *
15803401 GTTCGTTTATGTTCGTTTATGTTCATTCGTTTAT
1 GTTCGATTATGTTCGTTTATGTTCATTCGATTAT
15803435 GTTC
1 GTTC
15803439 ATTCATTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.56
Consensus pattern (34 bp):
GTTCGATTATGTTCGTTTATGTTCATTCGATTAT
Found at i:15805148 original size:65 final size:65
Alignment explanation
Indices: 15804988--15805148 Score: 195
Period size: 64 Copynumber: 2.5 Consensus size: 65
15804978 TTGTTTAAGG
* * * **
15804988 TGCATCGATGCACATGCAGTGCATCGATGCAT--GAATTTAAATAGAAAACATCGAATAGGATTT
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA-TTAAATAGAAAACATCGAATAGGATTT
15805051 A
65 A
* *
15805052 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATA-CAAACATCGAATATGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
*
15805116 TGCATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
15805149 ACCTTCATTA
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 61 0.72
65 22 0.26
66 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (65 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
Found at i:15806039 original size:149 final size:147
Alignment explanation
Indices: 15805864--15806166 Score: 579
Period size: 149 Copynumber: 2.0 Consensus size: 147
15805854 GAGTCGAGGG
15805864 TTCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
1 TTCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
15805929 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATA--TGGTCCTTATGGACATTATT
15805994 ATATGGCACTACGGTGCAA
129 ATATGGCACTACGGTGCAA
*
15806013 TTCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAGCATGTGTGAAGTCTTGTAAGACACA
1 TTCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
15806078 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGGTCCTTATGGACATTATTAT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGGTCCTTATGGACATTATTAT
15806143 ATGGCACTACGGTGCAA
131 ATGGCACTACGGTGCAA
15806160 TTCTACG
1 TTCTACG
15806167 TGGCACTTCG
Statistics
Matches: 153, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
147 46 0.30
149 107 0.70
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (147 bp):
TTCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGGTCCTTATGGACATTATTAT
ATGGCACTACGGTGCAA
Found at i:15806178 original size:23 final size:23
Alignment explanation
Indices: 15806144--15806189 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15806134 CATTATTATA
*
15806144 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
*
15806167 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTATACG
15806190 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:15809603 original size:65 final size:65
Alignment explanation
Indices: 15809443--15809603 Score: 195
Period size: 64 Copynumber: 2.5 Consensus size: 65
15809433 TTGTTTAAGG
* * * **
15809443 TGCATCGATGCACATGCAGTGCATCGATGCAT--GGATTTAAATAGAAAACATCGAATAGGATTT
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA-TTAAATAGAAAACATCGAATAGGATTT
15809506 A
65 A
* *
15809507 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATA-CAAACATCGAATATGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
*
15809571 TGCATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
15809604 ACCTTCATTA
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 61 0.72
65 22 0.26
66 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (65 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
Found at i:15809955 original size:18 final size:18
Alignment explanation
Indices: 15809921--15809955 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15809911 AAATGGGTAT
* *
15809921 ATATGTTATATGTATTGC
1 ATATGTTACATGAATTGC
15809939 ATATGTTACATGAATTG
1 ATATGTTACATGAATTG
15809956 AATGAATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (18 bp):
ATATGTTACATGAATTGC
Found at i:15811118 original size:149 final size:145
Alignment explanation
Indices: 15810943--15811243 Score: 566
Period size: 147 Copynumber: 2.0 Consensus size: 145
15810933 GAGTCGAGGG
15810943 TTCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
1 TTCTACGCGGTCCTTCGGG--ATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
15811008 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
64 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATA--TGGTCCTTATGGACATTATT
15811073 ATATGGCACTACGGTGCAA
127 ATATGGCACTACGGTGCAA
15811092 TTCTACGCGGTCCTTCGGGATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACATA
1 TTCTACGCGGTCCTTCGGGATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACATA
15811157 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGGTCCTTATGGACATTATTATAT
66 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGGTCCTTATGGACATTATTATAT
15811222 GGCACTACGGTGCAA
131 GGCACTACGGTGCAA
15811237 TTCTACG
1 TTCTACG
15811244 TGGCACTTCG
Statistics
Matches: 152, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
145 46 0.30
147 87 0.57
149 19 0.12
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (145 bp):
TTCTACGCGGTCCTTCGGGATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACATA
CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGGTCCTTATGGACATTATTATAT
GGCACTACGGTGCAA
Found at i:15811255 original size:23 final size:23
Alignment explanation
Indices: 15811221--15811266 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15811211 CATTATTATA
*
15811221 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
*
15811244 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTATACG
15811267 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:15813559 original size:14 final size:14
Alignment explanation
Indices: 15813540--15813569 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
15813530 ATTTTAGATT
15813540 TACAAAAAAAAATC
1 TACAAAAAAAAATC
15813554 TACAAAAAAAAATC
1 TACAAAAAAAAATC
15813568 TA
1 TA
15813570 TAATTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (14 bp):
TACAAAAAAAAATC
Found at i:15815179 original size:36 final size:36
Alignment explanation
Indices: 15815132--15815300 Score: 196
Period size: 36 Copynumber: 4.7 Consensus size: 36
15815122 GTTTTTAGAA
*
15815132 AAAAAAAATCTCAAGTGAGATAAAATATGTTCTAAG
1 AAAAACAATCTCAAGTGAGATAAAATATGTTCTAAG
* * *
15815168 AAAAACAATCTCAAGTGTGACAAAATATGTTTTAAG
1 AAAAACAATCTCAAGTGAGATAAAATATGTTCTAAG
* * * *
15815204 AAAAACAATATCAAGTGAGATAGAATCTGCTCTAAG
1 AAAAACAATCTCAAGTGAGATAAAATATGTTCTAAG
* * * *
15815240 AAAAACAATTTCAAGTGAGATAAAGTCTGTTTTAAG
1 AAAAACAATCTCAAGTGAGATAAAATATGTTCTAAG
* * *
15815276 -AAAACAAACTCGAGTGAGATCAAAT
1 AAAAACAATCTCAAGTGAGATAAAAT
15815301 CTTAAGTGAA
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
35 20 0.18
36 92 0.82
ACGTcount: A:0.49, C:0.11, G:0.15, T:0.25
Consensus pattern (36 bp):
AAAAACAATCTCAAGTGAGATAAAATATGTTCTAAG
Found at i:15815247 original size:72 final size:72
Alignment explanation
Indices: 15815101--15815300 Score: 224
Period size: 72 Copynumber: 2.8 Consensus size: 72
15815091 AAAAGGAACT
* * * * * *
15815101 ATCTCAATTGTGACAAAATTTGTTTTTAGAAAAAAAAAATCTCAAGTGAGATAAAATATGTTCTA
1 ATCTCAAGTGTGACAAAATATG-TTTTA-AGAAAAACAATATCAAGTGAGATAAAATATGCTCTA
15815166 AGAAAAACA
64 AGAAAAACA
* *
15815175 ATCTCAAGTGTGACAAAATATGTTTTAAGAAAAACAATATCAAGTGAGATAGAATCTGCTCTAAG
1 ATCTCAAGTGTGACAAAATATGTTTTAAGAAAAACAATATCAAGTGAGATAAAATATGCTCTAAG
15815240 AAAAACA
66 AAAAACA
* * * * * * *
15815247 ATTTCAAGTGAGATAAAGTCTGTTTTAAG-AAAACAA-ACTCGAGTGAGATCAAAT
1 ATCTCAAGTGTGACAAAATATGTTTTAAGAAAAACAATA-TCAAGTGAGATAAAAT
15815301 CTTAAGTGAA
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
70 1 0.01
71 20 0.18
72 63 0.58
73 5 0.05
74 20 0.18
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.28
Consensus pattern (72 bp):
ATCTCAAGTGTGACAAAATATGTTTTAAGAAAAACAATATCAAGTGAGATAAAATATGCTCTAAG
AAAAACA
Found at i:15819185 original size:24 final size:24
Alignment explanation
Indices: 15819158--15819206 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
15819148 TGTTCATGAA
15819158 CGTTCGGTTATATTCGTTTATGTT
1 CGTTCGGTTATATTCGTTTATGTT
*
15819182 CGTTCGGTTATGTTCGTTTATGTT
1 CGTTCGGTTATATTCGTTTATGTT
15819206 C
1 C
15819207 ATTCATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.10, C:0.14, G:0.22, T:0.53
Consensus pattern (24 bp):
CGTTCGGTTATATTCGTTTATGTT
Found at i:15819187 original size:14 final size:14
Alignment explanation
Indices: 15819170--15819199 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15819160 TTCGGTTATA
*
15819170 TTCGTTTATGTTCG
1 TTCGGTTATGTTCG
15819184 TTCGGTTATGTTCG
1 TTCGGTTATGTTCG
15819198 TT
1 TT
15819200 TATGTTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.23, T:0.57
Consensus pattern (14 bp):
TTCGGTTATGTTCG
Found at i:15819216 original size:24 final size:24
Alignment explanation
Indices: 15819164--15819219 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
15819154 TGAACGTTCG
* * *
15819164 GTTATATTCGTTTATGTTCGTTCG
1 GTTATGTTCGTTTATGTTCATTCA
15819188 GTTATGTTCGTTTATGTTCATTCA
1 GTTATGTTCGTTTATGTTCATTCA
*
15819212 TTTATGTT
1 GTTATGTT
15819220 TAACCCAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.14, C:0.11, G:0.18, T:0.57
Consensus pattern (24 bp):
GTTATGTTCGTTTATGTTCATTCA
Found at i:15825693 original size:35 final size:35
Alignment explanation
Indices: 15825647--15825761 Score: 176
Period size: 35 Copynumber: 3.3 Consensus size: 35
15825637 TGCAACCATT
** *
15825647 AGGTGCTTGCTTAACTTTGGAGATGTTTTTACTAG
1 AGGTGCTTGCTTGGCTTTGGAGACGTTTTTACTAG
15825682 AGGTGCTTGCTTGGCTTTGGAGACGTTTTTACTAG
1 AGGTGCTTGCTTGGCTTTGGAGACGTTTTTACTAG
* *
15825717 AGGTGCTTGCTTGGCTTTGGAGACGTTCTTGCTAG
1 AGGTGCTTGCTTGGCTTTGGAGACGTTTTTACTAG
*
15825752 AGGTGTTTGC
1 AGGTGCTTGC
15825762 ATGTGGCATG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 74 1.00
ACGTcount: A:0.15, C:0.14, G:0.31, T:0.40
Consensus pattern (35 bp):
AGGTGCTTGCTTGGCTTTGGAGACGTTTTTACTAG
Found at i:15825803 original size:30 final size:30
Alignment explanation
Indices: 15825768--15826117 Score: 520
Period size: 30 Copynumber: 11.7 Consensus size: 30
15825758 TTGCATGTGG
* ** *
15825768 CATGCTTGCTTGTGTTAACATTGTAATTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
* ** *
15825798 CATGCTTGCTTGTGTTAACATTGTAATTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
* ** *
15825828 CATGCTTGCTTGTGTTAACATTGTAATTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
* ** *
15825858 CATGCTTGCTTGTGTTAACATTGTAATTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
* ** *
15825888 CATGCTTGCTTGTGTTAACATTGTAATTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
15825918 CATGCTTGCTTGTGTTCACATTACAACTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
15825948 CATGCTTGCTTGTGTTCACATTACAACTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
15825978 CATGCTTGCTTGTGTTCACATTACAACTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
15826008 CATGCTTGCTTGTGTTCACATTACAACTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
15826038 CATGCTTGCTTGTGTTCACATTACAACTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
15826068 CATGCTTGCTTGTGTTCACATTACAACTGA
1 CATGCTTGCTTGTGTTCACATTACAACTGA
15826098 CATGCTTGCTTGTGTTCACA
1 CATGCTTGCTTGTGTTCACA
15826118 CTAGATGAAA
Statistics
Matches: 316, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
30 316 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (30 bp):
CATGCTTGCTTGTGTTCACATTACAACTGA
Found at i:15828406 original size:2 final size:2
Alignment explanation
Indices: 15828399--15828423 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15828389 AAATCTATTA
15828399 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15828424 ATTAAGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15828940 original size:15 final size:15
Alignment explanation
Indices: 15828922--15828954 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15828912 AAAATGATAA
15828922 AAATAA-AATTCAAAT
1 AAATAACAATT-AAAT
15828937 AAATAACAATTAAAT
1 AAATAACAATTAAAT
15828952 AAA
1 AAA
15828955 ATTAAACAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAACAATTAAAT
Found at i:15830225 original size:3 final size:3
Alignment explanation
Indices: 15830185--15830290 Score: 115
Period size: 3 Copynumber: 33.7 Consensus size: 3
15830175 TTTATTTAAA
* *
15830185 AAT AAT ATAT ATAT ATAT ATAT AAT -AT GAT ATT AAT AAT AAT AAT ATAT
1 AAT AAT A-AT A-AT A-AT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
**
15830234 AAT AAT AAT AAT AAT AAT AAT AATT AAT AAT AAT AAT AAT AAT TTT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
15830280 AAT AAT AAT AA
1 AAT AAT AAT AA
15830291 AAGTAAACTG
Statistics
Matches: 92, Mismatches: 7, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
2 2 0.02
3 69 0.75
4 21 0.23
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (3 bp):
AAT
Found at i:15830232 original size:25 final size:24
Alignment explanation
Indices: 15830187--15830290 Score: 98
Period size: 22 Copynumber: 4.5 Consensus size: 24
15830177 TATTTAAAAA
15830187 TAATATAT-AT-ATATATATATAATA
1 TAATATATAATAATA-ATA-ATAATA
*
15830211 TGATAT-TAATAATAATAAT-ATA
1 TAATATATAATAATAATAATAATA
15830233 TAATA-ATAATAATAATAATAATA
1 TAATATATAATAATAATAATAATA
* *
15830256 -ATTA-ATAATAATAATAATAATTT
1 TAATATATAATAATAATAATAA-TA
15830279 TAATA-ATAATAA
1 TAATATATAATAA
15830291 AAGTAAACTG
Statistics
Matches: 69, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
22 39 0.57
23 7 0.10
24 20 0.29
25 3 0.04
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (24 bp):
TAATATATAATAATAATAATAATA
Found at i:15830613 original size:45 final size:45
Alignment explanation
Indices: 15830549--15831165 Score: 946
Period size: 45 Copynumber: 13.7 Consensus size: 45
15830539 AATCTCATTC
15830549 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* *
15830594 GAAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* *
15830639 GAAAACATCATGCACTGAAGGGCTTACAGAAGACCCGAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* * *
15830684 GAAAACATCCTGTACTGAAGGGCTTATAGATGACCCAAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
**
15830729 GAAAACATCCTGCACTGAAGGGCTTATGGATGACCCGAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* *
15830774 GAAAACATCCTGCACTGAAGGGCTTACAGATAACCCAAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
*
15830819 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGATGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
** *
15830864 GAAAACATCCTGCACTGAAGGGCTTATGGATGACCCAAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* * **
15830909 GAAAACATCCTGCACTGAAGTGCTTACGGATGACCTAAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* * *
15830954 GAAAACATTCTGAACTGAAGGGCTTACGGATGACCCGAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* * * * *
15830999 GAAAACATCTTGTATTGAAGGGCTTACGGATGACCCAAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* *
15831044 GAAAACATCATGCACTGAAGGGCTTACGGATGACCCGAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
* *
15831089 GAAAACATCATGCACTGATGGGCTTACAGATGACCCGAAGGTTTT
1 GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
*
15831134 GAAAACATCATGCACTGAAGGGCTTACAGATG
1 GAAAACATCCTGCACTGAAGGGCTTACAGATG
15831166 GTGGGAAATA
Statistics
Matches: 529, Mismatches: 43, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 529 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (45 bp):
GAAAACATCCTGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
Found at i:15831851 original size:22 final size:22
Alignment explanation
Indices: 15831826--15831899 Score: 100
Period size: 22 Copynumber: 3.5 Consensus size: 22
15831816 AATAAAGCTT
15831826 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
15831848 TCATATTTGAAAACAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
15831870 TCATCTTTG---AGAAAATCTA
1 TCATCTTTGAAAAGAGAATCTA
15831889 TCATCTTTGAA
1 TCATCTTTGAA
15831900 GAATGTAGAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 17 0.38
22 28 0.62
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:15832364 original size:54 final size:53
Alignment explanation
Indices: 15832230--15832366 Score: 157
Period size: 53 Copynumber: 2.6 Consensus size: 53
15832220 ATAATCACTG
* * * * * *
15832230 GTTCGTAAAACATGTGACAATACATTCATCATTTCTCGTGGCTTCTGCCCGGT
1 GTTCGTAAAGCATTTGACAACACATTCATCATTTCTCGTGGCTTATGCCAGAT
* * * * *
15832283 TTTCGTAAAGCTTTTGATAACACATTCATCCTTTCTTGTGGCTTATGGCCAGAT
1 GTTCGTAAAGCATTTGACAACACATTCATCATTTCTCGTGGCTTAT-GCCAGAT
*
15832337 GTTCATAAAGCATTTGACAACACATTCATC
1 GTTCGTAAAGCATTTGACAACACATTCATC
15832367 TTTTTCTGTG
Statistics
Matches: 68, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 37 0.54
54 31 0.46
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (53 bp):
GTTCGTAAAGCATTTGACAACACATTCATCATTTCTCGTGGCTTATGCCAGAT
Found at i:15832377 original size:54 final size:52
Alignment explanation
Indices: 15832230--15832377 Score: 152
Period size: 54 Copynumber: 2.8 Consensus size: 52
15832220 ATAATCACTG
* * * * * *
15832230 GTTCGTAAAACATGTGACAATACATTCATCATTTCTCGTGGCTTCTGCCCGGT
1 GTTCGTAAAGCATTTGACAACACATTCATCATTTCT-GTGGCTTATGCCAGAT
* * * *
15832283 TTTCGTAAAGCTTTTGATAACACATTCATCCTTTCTTGTGGCTTATGGCCAGAT
1 GTTCGTAAAGCATTTGACAACACATTCATCATTTC-TGTGGCTTAT-GCCAGAT
* *
15832337 GTTCATAAAGCATTTGACAACACATTCATCTTTTTCTGTGG
1 GTTCGTAAAGCATTTGACAACACATTCATC-ATTTCTGTGG
15832378 TATCTGCACA
Statistics
Matches: 77, Mismatches: 15, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
53 36 0.47
54 37 0.48
55 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (52 bp):
GTTCGTAAAGCATTTGACAACACATTCATCATTTCTGTGGCTTATGCCAGAT
Found at i:15835688 original size:32 final size:32
Alignment explanation
Indices: 15835652--15835712 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
15835642 TGAAGAAATG
*
15835652 GTTGTTATGCTCATCTTGTAGAGATACTTTTC
1 GTTGTTATGCTCATCTCGTAGAGATACTTTTC
15835684 GTTGTTATGCTCATCTCGTAGAGATACTT
1 GTTGTTATGCTCATCTCGTAGAGATACTT
15835713 CTTATTTCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (32 bp):
GTTGTTATGCTCATCTCGTAGAGATACTTTTC
Found at i:15840568 original size:51 final size:51
Alignment explanation
Indices: 15840492--15840597 Score: 194
Period size: 51 Copynumber: 2.1 Consensus size: 51
15840482 CATACAATCT
* *
15840492 TTGGGTGCATAGCTCTCCTCTATCTTCGGAGTTCCTTTAGGATGCCTTTCC
1 TTGGGTGCATAGCTCTCCTCTATCTTCGGAGTTCCCTAAGGATGCCTTTCC
15840543 TTGGGTGCATAGCTCTCCTCTATCTTCGGAGTTCCCTAAGGATGCCTTTCC
1 TTGGGTGCATAGCTCTCCTCTATCTTCGGAGTTCCCTAAGGATGCCTTTCC
15840594 TTGG
1 TTGG
15840598 TTGCGTCATA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.12, C:0.27, G:0.23, T:0.38
Consensus pattern (51 bp):
TTGGGTGCATAGCTCTCCTCTATCTTCGGAGTTCCCTAAGGATGCCTTTCC
Found at i:15845781 original size:23 final size:23
Alignment explanation
Indices: 15845724--15845793 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
15845714 ATTTAATACT
* * * *
15845724 TGAAAATAAAATAAAAATATTAA
1 TGAAAATAATATATATATATAAA
*
15845747 TAACAAATAATATATATATATAAA
1 TGA-AAATAATATATATATATAAA
15845771 TGAAAATAATA-AGTATATATAAA
1 TGAAAATAATATA-TATATATAAA
15845794 AATTTTGAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
22 1 0.03
23 20 0.51
24 18 0.46
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (23 bp):
TGAAAATAATATATATATATAAA
Found at i:15846313 original size:2 final size:2
Alignment explanation
Indices: 15846306--15846340 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
15846296 AAATCTATTA
15846306 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15846341 AATAAGATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15846746 original size:2 final size:2
Alignment explanation
Indices: 15846739--15846780 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
15846729 ATTTAAACAA
*
15846739 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15846781 GACTAATATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Done.