Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 77 of 89
Found at i:18529228 original size:3 final size:3
Alignment explanation
Indices: 18529220--18529259 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
18529210 TTTATAAATT
18529220 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
18529260 GTGTTTCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:18531308 original size:145 final size:145
Alignment explanation
Indices: 18531008--18531302 Score: 358
Period size: 145 Copynumber: 2.0 Consensus size: 145
18530998 TATTTTCCGT
* * *
18531008 AATAACAAATTGTAACAAATCTGTTTAGTCATAACAACATATTAAACTTAATCAAAATAAGAAAT
1 AATAACTAATTGTAACAAATCTATTTAATCATAACAACATATTAAACTTAATCAAAATAAGAAAT
* * * ** *
18531073 TATGTCAAATTTATTTAATCACAATTTTTTCTTAAAATAACTAATTATGACAATTTTGTATAGTC
66 TATGTCAAATTTATTTAATCACAATTTTTTCTCAAAATAACTAATGATGAAAAAATTATATAGTC
* * * **
18531138 ATAATAACAATTATT
131 AAAATAAAAATAACA
** * * * *
18531153 TGTAACTAATTGTAACAAATTTATTTAATCATAACAATATATTAAATTTAGTCAAAATAAGAAAT
1 AATAACTAATTGTAACAAATCTATTTAATCATAACAACATATTAAACTTAATCAAAATAAGAAAT
* * *
18531218 TATGTCAAATTTATTTAGTCACACTATTTTTCTCAAAATAA-TAAATGATGAAAAAATTATTTAG
66 TATGTCAAATTTATTTAATCACAAT-TTTTTCTCAAAATAACT-AATGATGAAAAAATTATATAG
18531282 TCAAAATAAAAATAACA
129 TCAAAATAAAAATAACA
18531299 AATA
1 AATA
18531303 TTAATTTCTC
Statistics
Matches: 123, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
145 80 0.65
146 43 0.35
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (145 bp):
AATAACTAATTGTAACAAATCTATTTAATCATAACAACATATTAAACTTAATCAAAATAAGAAAT
TATGTCAAATTTATTTAATCACAATTTTTTCTCAAAATAACTAATGATGAAAAAATTATATAGTC
AAAATAAAAATAACA
Found at i:18531557 original size:196 final size:194
Alignment explanation
Indices: 18531191--18531576 Score: 498
Period size: 196 Copynumber: 2.0 Consensus size: 194
18531181 TCATAACAAT
*
18531191 ATATTAAATTTAGTCAAAATAAGAAATTATGTCAAATTTATTTAGTCACACTATTTTTCTCAAAA
1 ATATTAAATTTAGTCAAAATAAGAAATTATGTCAAATTTATTTAGTCACAATATTTTTCTCAAAA
18531256 TAATAAATGATGAAAAAATTATTTAGTCAAAATAAAAATAACAAATATTAATTTCTCAATATAAA
66 TAATAAATGATGAAAAAATTATTTAGTCAAAATAAAAATAACAAATATTAATTTCTCAATATAAA
* **
18531321 AATTTATGAAAAATGATATTTTTTCACAATAATTAATTATAACAAAT-ATATTTAGTCACATACC
131 AATTTATGAAAAATGATATTCTTTCACAATAACGAATTATAACAAATGA-ATTTAGTCACATACC
* *
18531385 ATATTAAATTTAGTCAAAATAA-ATAATTATGTCAAATTTGTTTCGTCACAATA-TTTTCTCAAA
1 ATATTAAATTTAGTCAAAATAAGA-AATTATGTCAAATTTATTTAGTCACAATATTTTTCTCAAA
* ** * * * * * *
18531448 ATAA-AATTTTTTTATAAATTTATTT-TTCATAATAAAAAATTGTAACAAATGTTAATTTCTCAA
65 ATAATAA-ATGATGAAAAAATTATTTAGTCAAAAT-AAAAA---TAACAAATATTAATTTCTCAA
*
18531511 TATAACGAA-TTATGACAAAAT-ATATTCTTTCACAATAACGAATTATAACAAATGAATTTAGTC
125 TATAA-AAATTTATGA-AAAATGATATTCTTTCACAATAACGAATTATAACAAATGAATTTAGTC
18531574 ACA
188 ACA
18531577 CAAAAAAATT
Statistics
Matches: 167, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
192 8 0.05
193 32 0.19
194 48 0.29
196 71 0.43
197 8 0.05
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (194 bp):
ATATTAAATTTAGTCAAAATAAGAAATTATGTCAAATTTATTTAGTCACAATATTTTTCTCAAAA
TAATAAATGATGAAAAAATTATTTAGTCAAAATAAAAATAACAAATATTAATTTCTCAATATAAA
AATTTATGAAAAATGATATTCTTTCACAATAACGAATTATAACAAATGAATTTAGTCACATACC
Found at i:18533058 original size:27 final size:27
Alignment explanation
Indices: 18533023--18533078 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
18533013 CCGCCATCAC
*
18533023 CACTTTGAACTTGAAACTCCATAACAT
1 CACTTTGAACTTGAAACTCCACAACAT
*
18533050 CACTTTGAACTTGAAAGTCCACAACAT
1 CACTTTGAACTTGAAACTCCACAACAT
18533077 CA
1 CA
18533079 AGATCTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.27
Consensus pattern (27 bp):
CACTTTGAACTTGAAACTCCACAACAT
Found at i:18536670 original size:20 final size:20
Alignment explanation
Indices: 18536645--18536759 Score: 115
Period size: 20 Copynumber: 5.7 Consensus size: 20
18536635 AATTTGGAAA
*
18536645 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
18536665 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
* *
18536686 ATCACAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
18536706 TTCGCAACGCGATTCTGCCT
1 ATCGCAACGCGATACTGACT
*
18536726 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
18536746 ATCGCAACGAGATA
1 ATCGCAACGCGATA
18536760 ATACAGAATC
Statistics
Matches: 76, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
19 2 0.03
20 59 0.78
21 13 0.17
22 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:18536687 original size:41 final size:41
Alignment explanation
Indices: 18536642--18536779 Score: 170
Period size: 41 Copynumber: 3.4 Consensus size: 41
18536632 GCGAATTTGG
18536642 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
* * ** *
18536683 AAAATCACAATGCGATACTGACTTTCGCAACGCGATTCTGC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
** * * *
18536724 -CTATCGCAACGCGATTCTGACTATCGCAACGAGATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
*
18536764 AGAATCGCAATGCGAT
1 AAAATCGCAATGCGAT
18536780 TTTCAAAGTT
Statistics
Matches: 78, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 30 0.38
41 48 0.62
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (41 bp):
AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
Found at i:18537516 original size:24 final size:24
Alignment explanation
Indices: 18537489--18537542 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
18537479 GTATTCGAAA
18537489 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
18537513 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
18537537 TTTGAT
1 TTTGAT
18537543 GATGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:18540232 original size:14 final size:14
Alignment explanation
Indices: 18540213--18540249 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
18540203 CATCAATTAA
18540213 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
18540227 ACAAATCATCTTTT
1 ACAAATCAACATTT
18540241 ACAAATCAA
1 ACAAATCAA
18540250 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:18541696 original size:42 final size:42
Alignment explanation
Indices: 18541650--18541742 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
18541640 CCTCTTCAAC
* *
18541650 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACCCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGGGGACCCTTGAGG
* * *
18541692 GATGATAGGGGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGGGGACCCTTGAGG
18541734 GATGACAGG
1 GATGACAGG
18541743 TGAGTCGGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.22, C:0.16, G:0.42, T:0.20
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGGGAGGGGACCCTTGAGG
Found at i:18541701 original size:21 final size:21
Alignment explanation
Indices: 18541676--18541738 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
18541666 TGAACGGTGG
18541676 GAGGGGACCCTTGAGGGATGA
1 GAGGGGACCCTTGAGGGATGA
* **
18541697 TAGGGG-CCTCTTGAACGATTG-
1 GAGGGGACC-CTTGAGGGA-TGA
*
18541718 GAGGGGACTCTTGAGGGATGA
1 GAGGGGACCCTTGAGGGATGA
18541739 CAGGTGAGTC
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
20 4 0.13
21 24 0.77
22 3 0.10
ACGTcount: A:0.22, C:0.14, G:0.43, T:0.21
Consensus pattern (21 bp):
GAGGGGACCCTTGAGGGATGA
Found at i:18542082 original size:27 final size:25
Alignment explanation
Indices: 18542027--18542093 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
18542017 GTAAGCACTT
* *
18542027 ATATAAACATTTAAAAGGACAATAT
1 ATATAAACATTTAAAAGAACAATAA
* *
18542052 ATATAAACATTTCAGAAGAAGAATAGA
1 ATATAAACATTT-AAAAGAACAATA-A
*
18542079 ATATAAA-ACTTAAAA
1 ATATAAACATTTAAAA
18542094 TCGCAACGCG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 15 0.44
26 12 0.35
27 7 0.21
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.25
Consensus pattern (25 bp):
ATATAAACATTTAAAAGAACAATAA
Found at i:18542118 original size:20 final size:20
Alignment explanation
Indices: 18542093--18542181 Score: 133
Period size: 20 Copynumber: 4.5 Consensus size: 20
18542083 AAAACTTAAA
18542093 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
18542113 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
18542133 ATCGCAATGCGAAAATGGCT
1 ATCGCAACGCGAAAATGACT
**
18542153 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
18542173 ATCACAACG
1 ATCGCAACG
18542182 AGAGAATCGC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:18542210 original size:19 final size:19
Alignment explanation
Indices: 18542186--18542236 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
18542176 ACAACGAGAG
*
18542186 AATCGCAATGCGAAATGA-A
1 AATCGCAATGCGAAA-CACA
*
18542205 AATCGCAACGCGAAACACA
1 AATCGCAATGCGAAACACA
18542224 AATCGCAATGCGA
1 AATCGCAATGCGA
18542237 TAAATTCGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 27 0.96
ACGTcount: A:0.45, C:0.24, G:0.20, T:0.12
Consensus pattern (19 bp):
AATCGCAATGCGAAACACA
Found at i:18542284 original size:19 final size:20
Alignment explanation
Indices: 18542241--18542293 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
18542231 ATGCGATAAA
*
18542241 TTCGTATTGCGATTTTCATT
1 TTCGCATTGCGATTTTCATT
*
18542261 TTCGCGTTGCGATTTTCA-T
1 TTCGCATTGCGATTTTCATT
18542280 TTCGCATTGCGATT
1 TTCGCATTGCGATT
18542294 CTCTCGTTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.13, C:0.19, G:0.19, T:0.49
Consensus pattern (20 bp):
TTCGCATTGCGATTTTCATT
Found at i:18542323 original size:20 final size:20
Alignment explanation
Indices: 18542298--18542366 Score: 95
Period size: 20 Copynumber: 3.5 Consensus size: 20
18542288 GCGATTCTCT
*
18542298 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAATTTCG
18542318 CGTTGCGATAG-CAATTTCCG
1 CGTTGCGATAGTCAATTT-CG
* *
18542338 TGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCAATTTCG
18542358 CGTTGCGAT
1 CGTTGCGAT
18542367 TTTAAGTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.12
20 33 0.77
21 5 0.12
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCAATTTCG
Found at i:18542964 original size:18 final size:18
Alignment explanation
Indices: 18542941--18542989 Score: 98
Period size: 18 Copynumber: 2.7 Consensus size: 18
18542931 CGGGTCGATC
18542941 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
18542959 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
18542977 AGGTGATGGCTCT
1 AGGTGATGGCTCT
18542990 CGAAGTGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.12, C:0.12, G:0.47, T:0.29
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:18544344 original size:20 final size:20
Alignment explanation
Indices: 18544321--18544392 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
18544311 GAAACTTAAA
18544321 ATCGCAACGAGAAAATGACT
1 ATCGCAACGAGAAAATGACT
*
18544341 ATCGAAAC-ATGAAAATGACT
1 ATCGCAACGA-GAAAATGACT
*
18544361 ATCGCAACGCGAAAATGACT
1 ATCGCAACGAGAAAATGACT
18544381 ATCGCAACGAGA
1 ATCGCAACGAGA
18544393 TAATCGCAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.98
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.15
Consensus pattern (20 bp):
ATCGCAACGAGAAAATGACT
Found at i:18544430 original size:32 final size:34
Alignment explanation
Indices: 18544361--18544455 Score: 113
Period size: 32 Copynumber: 2.9 Consensus size: 34
18544351 GAAAATGACT
* * ** *
18544361 ATCGCAACGCGAAAATGACTATCGCAACGAGATA
1 ATCGCAATGCGGAAATGAAAATCGCAACGAGAAA
* *
18544395 ATCGCAATGC-GAATTG-AAATCGTAACGAGAAA
1 ATCGCAATGCGGAAATGAAAATCGCAACGAGAAA
18544427 ATCGCAATGCGGAAATGAAAATCGCAACG
1 ATCGCAATGCGGAAATGAAAATCGCAACG
18544456 CGAATTTGGT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
32 22 0.44
33 9 0.18
34 19 0.38
ACGTcount: A:0.42, C:0.20, G:0.22, T:0.16
Consensus pattern (34 bp):
ATCGCAATGCGGAAATGAAAATCGCAACGAGAAA
Found at i:18544482 original size:19 final size:19
Alignment explanation
Indices: 18544455--18544520 Score: 96
Period size: 19 Copynumber: 3.4 Consensus size: 19
18544445 AAATCGCAAC
* *
18544455 GCGAATTTGGTTTTGCGTT
1 GCGATTTTGGTTTCGCGTT
*
18544474 GCGATTTTGGTTTCCGCATT
1 GCGATTTTGGTTT-CGCGTT
18544494 GCGATTTTGGTTTCGCGTT
1 GCGATTTTGGTTTCGCGTT
18544513 GCGATTTT
1 GCGATTTT
18544521 AATTTGTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 25 0.60
20 17 0.40
ACGTcount: A:0.09, C:0.15, G:0.29, T:0.47
Consensus pattern (19 bp):
GCGATTTTGGTTTCGCGTT
Found at i:18544626 original size:19 final size:19
Alignment explanation
Indices: 18544542--18544647 Score: 104
Period size: 20 Copynumber: 5.4 Consensus size: 19
18544532 CGATTCTCTC
* *
18544542 GTTGCGATAGTCATTTCCGC
1 GTTGCGATACTCATTT-CGT
*
18544562 GTTGCGATAGTCATTTTCGT
1 GTTGCGATACTCA-TTTCGT
* * *
18544582 GTTGCGATAGTTATTTTGT
1 GTTGCGATACTCATTTCGT
*
18544601 CGTTGCGATTCTCATTTCGT
1 -GTTGCGATACTCATTTCGT
* *
18544621 GTTGCGATTCTCATTTCAT
1 GTTGCGATACTCATTTCGT
18544640 GTTGCGAT
1 GTTGCGAT
18544648 TCTCGGTTTC
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
19 31 0.41
20 42 0.55
21 3 0.04
ACGTcount: A:0.14, C:0.18, G:0.24, T:0.44
Consensus pattern (19 bp):
GTTGCGATACTCATTTCGT
Found at i:18544648 original size:19 final size:19
Alignment explanation
Indices: 18544602--18544651 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
18544592 TTATTTTGTC
*
18544602 GTTGCGATTCTCATTTCGT
1 GTTGCGATTCTCATTTCAT
18544621 GTTGCGATTCTCATTTCAT
1 GTTGCGATTCTCATTTCAT
18544640 GTTGCGATTCTC
1 GTTGCGATTCTC
18544652 GGTTTCAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (19 bp):
GTTGCGATTCTCATTTCAT
Found at i:18545016 original size:22 final size:22
Alignment explanation
Indices: 18544989--18545038 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
18544979 ATGGAGATAA
18544989 ACGGATTTCGCCGGAGATGGGG
1 ACGGATTTCGCCGGAGATGGGG
*
18545011 ACGGATTTCGTCGGAGATGGGG
1 ACGGATTTCGCCGGAGATGGGG
18545033 ACGGAT
1 ACGGAT
18545039 GTCACCGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.44, T:0.20
Consensus pattern (22 bp):
ACGGATTTCGCCGGAGATGGGG
Found at i:18545269 original size:20 final size:20
Alignment explanation
Indices: 18545244--18545332 Score: 142
Period size: 20 Copynumber: 4.5 Consensus size: 20
18545234 TGTATTATCT
18545244 CGTTGCGATAGTCAGAATCG
1 CGTTGCGATAGTCAGAATCG
*
18545264 CGTTGCGATAGGCAGAATCG
1 CGTTGCGATAGTCAGAATCG
* *
18545284 CGTTGCGAAAGTCAGTATCG
1 CGTTGCGATAGTCAGAATCG
*
18545304 CGTTGCGATAGTCAGTATCG
1 CGTTGCGATAGTCAGAATCG
18545324 CGTTGCGAT
1 CGTTGCGAT
18545333 TTTCCAAATT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.26
Consensus pattern (20 bp):
CGTTGCGATAGTCAGAATCG
Found at i:18545350 original size:21 final size:21
Alignment explanation
Indices: 18545321--18545393 Score: 103
Period size: 21 Copynumber: 3.5 Consensus size: 21
18545311 ATAGTCAGTA
*
18545321 TCGCGTTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
18545342 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* **
18545363 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCAAAT
18545383 TCGCATTGCGA
1 TCGCATTGCGA
18545394 ATTGGGAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
20 17 0.35
21 31 0.65
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:18545435 original size:21 final size:22
Alignment explanation
Indices: 18545383--18545435 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
18545373 ATTTACTTAT
18545383 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
18545404 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
18545425 TCGCATTGCGA
1 TCGCATTGCGA
18545436 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:18546512 original size:44 final size:44
Alignment explanation
Indices: 18546463--18546556 Score: 179
Period size: 44 Copynumber: 2.1 Consensus size: 44
18546453 AAATTTAATC
18546463 TATCAACAAACTTAAGATTAATTTATCTTGAATCCATCTAACTT
1 TATCAACAAACTTAAGATTAATTTATCTTGAATCCATCTAACTT
*
18546507 TATCAACAAACTTAAGGTTAATTTATCTTGAATCCATCTAACTT
1 TATCAACAAACTTAAGATTAATTTATCTTGAATCCATCTAACTT
18546551 TATCAA
1 TATCAA
18546557 ATACATATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.38
Consensus pattern (44 bp):
TATCAACAAACTTAAGATTAATTTATCTTGAATCCATCTAACTT
Found at i:18546993 original size:15 final size:15
Alignment explanation
Indices: 18546964--18547001 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
18546954 TGATATGACA
*
18546964 TTTATT-ATTATTAT
1 TTTATTAATTAATAT
18546978 TTTATTAATTAATAT
1 TTTATTAATTAATAT
18546993 TTTATTAAT
1 TTTATTAAT
18547002 ATTATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTATTAATTAATAT
Found at i:18551753 original size:12 final size:12
Alignment explanation
Indices: 18551736--18551761 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18551726 AATAAATGAA
18551736 AAATAAAAAATT
1 AAATAAAAAATT
18551748 AAATAAAAAATT
1 AAATAAAAAATT
18551760 AA
1 AA
18551762 CAATTGTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAAAAAATT
Found at i:18552296 original size:21 final size:21
Alignment explanation
Indices: 18552252--18552297 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
18552242 TATAATATGA
* **
18552252 TTGTGGTGCCATCTGATATGG
1 TTGTGGTGCCATCTGAAACAG
*
18552273 TTGTGGTGCCATTTGAAACAG
1 TTGTGGTGCCATCTGAAACAG
18552294 TTGT
1 TTGT
18552298 AGAATGTACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.17, C:0.13, G:0.30, T:0.39
Consensus pattern (21 bp):
TTGTGGTGCCATCTGAAACAG
Found at i:18554644 original size:2 final size:2
Alignment explanation
Indices: 18554637--18554665 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
18554627 ATACGAAAGT
18554637 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
18554666 ATTGATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:18558383 original size:40 final size:40
Alignment explanation
Indices: 18558328--18558456 Score: 258
Period size: 40 Copynumber: 3.2 Consensus size: 40
18558318 TCATTTGGGC
18558328 ATTGAATCATCAAACATAATCCGTTTATCTGTTAGGAGCT
1 ATTGAATCATCAAACATAATCCGTTTATCTGTTAGGAGCT
18558368 ATTGAATCATCAAACATAATCCGTTTATCTGTTAGGAGCT
1 ATTGAATCATCAAACATAATCCGTTTATCTGTTAGGAGCT
18558408 ATTGAATCATCAAACATAATCCGTTTATCTGTTAGGAGCT
1 ATTGAATCATCAAACATAATCCGTTTATCTGTTAGGAGCT
18558448 ATTGAATCA
1 ATTGAATCA
18558457 ATTCATTCCA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (40 bp):
ATTGAATCATCAAACATAATCCGTTTATCTGTTAGGAGCT
Found at i:18567425 original size:15 final size:16
Alignment explanation
Indices: 18567407--18567440 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
18567397 GAATTTTTAG
18567407 TTATTTTTA-AATTAT
1 TTATTTTTATAATTAT
*
18567422 TTATTTTTATAGTTAT
1 TTATTTTTATAATTAT
18567438 TTA
1 TTA
18567441 ATACAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TTATTTTTATAATTAT
Found at i:18573615 original size:5 final size:5
Alignment explanation
Indices: 18573592--18573634 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
18573582 AATTAATCGA
*
18573592 AAAAT -AAAT GAATAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
18573635 TGTTTTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 4 0.12
5 27 0.79
6 3 0.09
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:18579114 original size:142 final size:143
Alignment explanation
Indices: 18578858--18579143 Score: 565
Period size: 142 Copynumber: 2.0 Consensus size: 143
18578848 CTTCCTCTTG
18578858 ACCAATACCTTAATTTAAGTGATCTCGAATATCACGAGGCATGGCTGCATTCCCAACATTCAAAA
1 ACCAATACCTTAATTTAAGTGATCTCGAATATCACGAGGCATGGCTGCATTCCCAACATTCAAAA
18578923 TTTCCTCAGTATTCTAATCTTCCTCTTAACCAATATCTTGATTGCTTGAGCACGTTGGGCATGT-
66 TTTCCTCAGTATTCTAATCTTCCTCTTAACCAATATCTTGATTGCTTGAGCACGTTGGGCATGTC
18578987 TTCTTTGCCTAAA
131 TTCTTTGCCTAAA
18579000 ACCAATACCTTAATTTAAGTGATCTCGAATATCACGAGGCATGGCTGCATTCCCAACATTCAAAA
1 ACCAATACCTTAATTTAAGTGATCTCGAATATCACGAGGCATGGCTGCATTCCCAACATTCAAAA
18579065 TTTCCTCAGTATTCTAATCTTCCTCTTAACCAATATCTTGATTGCTTGAGCACGTTGGGCATGTC
66 TTTCCTCAGTATTCTAATCTTCCTCTTAACCAATATCTTGATTGCTTGAGCACGTTGGGCATGTC
18579130 TTCTTTGCCTAAA
131 TTCTTTGCCTAAA
18579143 A
1 A
18579144 TGCCTCTCAA
Statistics
Matches: 143, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
142 129 0.90
143 14 0.10
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (143 bp):
ACCAATACCTTAATTTAAGTGATCTCGAATATCACGAGGCATGGCTGCATTCCCAACATTCAAAA
TTTCCTCAGTATTCTAATCTTCCTCTTAACCAATATCTTGATTGCTTGAGCACGTTGGGCATGTC
TTCTTTGCCTAAA
Found at i:18590009 original size:31 final size:30
Alignment explanation
Indices: 18589959--18590057 Score: 107
Period size: 31 Copynumber: 3.3 Consensus size: 30
18589949 CATTACACAC
18589959 ACTA-ATATATACTATATATATTTCTTCAAAA
1 ACTATATATATACTATATATATTT-TT-AAAA
*
18589990 ACTATATATATA-TATATATAATTTT-AAA
1 ACTATATATATACTATATATATTTTTAAAA
18590018 A-TATAATATATACTATATATATGTTTTTAAAA
1 ACTAT-ATATATACTATATATA--TTTTTAAAA
*
18590050 ATTATATA
1 ACTATATA
18590058 CATATGTTTG
Statistics
Matches: 59, Mismatches: 2, Indels: 13
0.80 0.03 0.18
Matches are distributed among these distances:
27 3 0.05
28 11 0.19
29 8 0.14
30 2 0.03
31 18 0.31
32 14 0.24
33 3 0.05
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.45
Consensus pattern (30 bp):
ACTATATATATACTATATATATTTTTAAAA
Found at i:18592129 original size:60 final size:60
Alignment explanation
Indices: 18592065--18592191 Score: 141
Period size: 60 Copynumber: 2.1 Consensus size: 60
18592055 GTTTTGGGAT
* * * * *
18592065 CAATTTAGAAAGATGATCATG-GTTTAGGAATGAAATT-AGAATGTTTAAAAGTTTAAGGAC
1 CAATTTAGAAAGAGGATC-GGCGTTTAGGAATGAAATTGA-AATATTCAAAAGTATAAGGAC
* * * *
18592125 CAATTTAGAATGAGGGTCGGCGTTTAGGGATGAAATTGAAATATTCGAAAGTATAAGGAC
1 CAATTTAGAAAGAGGATCGGCGTTTAGGAATGAAATTGAAATATTCAAAAGTATAAGGAC
18592185 CAATTTA
1 CAATTTA
18592192 AAATAAGGTT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
59 1 0.02
60 54 0.96
61 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (60 bp):
CAATTTAGAAAGAGGATCGGCGTTTAGGAATGAAATTGAAATATTCAAAAGTATAAGGAC
Found at i:18595059 original size:21 final size:21
Alignment explanation
Indices: 18595010--18595066 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
18595000 TTGCGCTTAT
* * *
18595010 TTAAAAGTTATTTATGAATAG
1 TTAAAAATTATATATGAAAAG
**
18595031 TTTGAAATTATATATGAAAAG
1 TTAAAAATTATATATGAAAAG
18595052 TTAAAAATTA-ATATG
1 TTAAAAATTATATATG
18595067 GTTATTGACA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (21 bp):
TTAAAAATTATATATGAAAAG
Found at i:18600473 original size:32 final size:32
Alignment explanation
Indices: 18600432--18600493 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
18600422 CTTCAAAAAC
18600432 TTTTCAGTGATATATCACTTCATTTCAGAATT
1 TTTTCAGTGATATATCACTTCATTTCAGAATT
* *
18600464 TTTTTAGTGATATATCACTTCATTTTAGAA
1 TTTTCAGTGATATATCACTTCATTTCAGAA
18600494 AAACATCCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (32 bp):
TTTTCAGTGATATATCACTTCATTTCAGAATT
Found at i:18600598 original size:32 final size:32
Alignment explanation
Indices: 18600562--18600630 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
18600552 TCTTCACTCT
* ** *
18600562 AGAAACTTTTTAGTGATATATCACTTCATTTC
1 AGAAACTGTTTAGCAATATAGCACTTCATTTC
18600594 AGAAACTGTTTAGCAATATAGCACTTCATTTC
1 AGAAACTGTTTAGCAATATAGCACTTCATTTC
18600626 AGAAA
1 AGAAA
18600631 AACATCCATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (32 bp):
AGAAACTGTTTAGCAATATAGCACTTCATTTC
Found at i:18600606 original size:136 final size:138
Alignment explanation
Indices: 18600414--18600743 Score: 468
Period size: 136 Copynumber: 2.4 Consensus size: 138
18600404 TAGTTCCCAA
** * ** *
18600414 TAACTTCACTTCAAAAACTTTTCAGTGATATATCACTTCATTTCAGAATTTTTTTAGTGATATAT
1 TAACTTCACTTCAAAAACTTTTCAGTGATATATCACTTCATTTCAGAAACTGTTTAGCAATATAG
* * * *
18600479 CACTTCATTTTAGAAAAACATCCATTTCTCATTGACCATTTAATGCACAATGAC-AAACTTTTCA
66 CACTTCATTTCAGAAAAACATCCATTTCACATAGACCATTTAATGCACAAAGACAAAACTTTTCA
18600543 GTCTCCA-
131 GTCTCCAT
* * *
18600550 TATCTTCAC-TCTAGAAACTTTTTAGTGATATATCACTTCATTTCAGAAACTGTTTAGCAATATA
1 TAACTTCACTTC-AAAAACTTTTCAGTGATATATCACTTCATTTCAGAAACTGTTTAGCAATATA
18600614 GCACTTCATTTCAGAAAAACATCCATTTCACATAGACCATTTAATGCACAAAGACATAAACTTTT
65 GCACTTCATTTCAGAAAAACATCCATTTCACATAGACCATTTAATGCACAAAGACA-AAACTTTT
18600679 CAGTCTCCAT
129 CAGTCTCCAT
* * *
18600689 TAACTTCACTTCAAAAACTTTTCAGTGATATATCAATTAATTTCAGGAAAGTGTT
1 TAACTTCACTTCAAAAACTTTTCAGTGATATATCACTTCATTTCA-GAAACTGTT
18600744 CATTTCTCAT
Statistics
Matches: 169, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
135 2 0.01
136 103 0.61
138 17 0.10
139 37 0.22
140 10 0.06
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (138 bp):
TAACTTCACTTCAAAAACTTTTCAGTGATATATCACTTCATTTCAGAAACTGTTTAGCAATATAG
CACTTCATTTCAGAAAAACATCCATTTCACATAGACCATTTAATGCACAAAGACAAAACTTTTCA
GTCTCCAT
Found at i:18600720 original size:107 final size:107
Alignment explanation
Indices: 18600609--18600840 Score: 304
Period size: 107 Copynumber: 2.2 Consensus size: 107
18600599 CTGTTTAGCA
* *
18600609 ATATAGCACTTCATTTCAGAAAAACATCCATTTCACATAGACCATTTAATGCACAAAGACATAAA
1 ATATATCACTTCATTTCAGAAAAACATCCATTTCACATAGACCATTTAATGCACAAAGACAAAAA
* *
18600674 CTTTTCAGT-CTCCATTAACTTCACTTCAAAAACTTTTCAGTG
66 CTTTTCAATGCTCAATT-ACTTCACTTCAAAAACTTTTCAGTG
* * * *** * * *
18600716 ATATATCAATTAATTTCAGGAAAGTGTTCATTTCTCATAGACCATTTAATGCACAATGACAAAAA
1 ATATATCACTTCATTTCAGAAAAACATCCATTTCACATAGACCATTTAATGCACAAAGACAAAAA
*
18600781 CTTTTCAATGCTCAATTACTTCACTTCAGAAACTTTTCAGTG
66 CTTTTCAATGCTCAATTACTTCACTTCAAAAACTTTTCAGTG
* *
18600823 GTCTATCACTTCATTTCA
1 ATATATCACTTCATTTCA
18600841 TAAACTTTTC
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
107 100 0.94
108 6 0.06
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (107 bp):
ATATATCACTTCATTTCAGAAAAACATCCATTTCACATAGACCATTTAATGCACAAAGACAAAAA
CTTTTCAATGCTCAATTACTTCACTTCAAAAACTTTTCAGTG
Found at i:18600819 original size:32 final size:32
Alignment explanation
Indices: 18600778--18600851 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
18600768 ACAATGACAA
*
18600778 AAACTTTTCAATGCTCAATTACTTCACTTCAG
1 AAACTTTTCAATGCTCAATCACTTCACTTCAG
* * * * *
18600810 AAACTTTTCAGTGGTCTATCACTTCATTTCAT
1 AAACTTTTCAATGCTCAATCACTTCACTTCAG
18600842 AAACTTTTCA
1 AAACTTTTCA
18600852 TAAACCTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (32 bp):
AAACTTTTCAATGCTCAATCACTTCACTTCAG
Found at i:18601549 original size:36 final size:36
Alignment explanation
Indices: 18601483--18601575 Score: 95
Period size: 36 Copynumber: 2.7 Consensus size: 36
18601473 GGTGTGTGTA
*
18601483 AGGTTTGTTGTATTTATGTCCTTAACGTAATGTGCT
1 AGGTTTGTTGTATTTATCTCCTTAACGTAATGTGCT
* * * *
18601519 AGGTTTGTTGTTTTTATCTTCTTTATGTAATGTG-T
1 AGGTTTGTTGTATTTATCTCCTTAACGTAATGTGCT
*
18601554 ATGG-TTCTT-T-TTTATCTCCTTA
1 A-GGTTTGTTGTATTTATCTCCTTA
18601576 GTGTAATGCT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
33 10 0.21
34 1 0.02
35 6 0.12
36 31 0.65
ACGTcount: A:0.16, C:0.11, G:0.18, T:0.55
Consensus pattern (36 bp):
AGGTTTGTTGTATTTATCTCCTTAACGTAATGTGCT
Found at i:18602284 original size:2 final size:2
Alignment explanation
Indices: 18602279--18602324 Score: 76
Period size: 2 Copynumber: 23.0 Consensus size: 2
18602269 CCTTTTTTTC
18602279 AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18602320 CAT AT
1 -AT AT
18602325 TATTTATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.02
2 39 0.93
3 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18602309 original size:23 final size:23
Alignment explanation
Indices: 18602279--18602324 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
18602269 CCTTTTTTTC
*
18602279 ATATATATATATATATATTATAT
1 ATATATATATATATATATCATAT
18602302 ATATATATATATATATATCATAT
1 ATATATATATATATATATCATAT
18602325 TATTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
ATATATATATATATATATCATAT
Found at i:18602468 original size:30 final size:29
Alignment explanation
Indices: 18602432--18602494 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
18602422 CTCGATATAT
18602432 CACCGGTGAACAATATATTTCCCGATCTAA
1 CACCGGT-AACAATATATTTCCCGATCTAA
* * *
18602462 CACCGGTCATATTATATTTCCCGATCTAA
1 CACCGGTAACAATATATTTCCCGATCTAA
18602491 CACC
1 CACC
18602495 CTTAGCAGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.29
Consensus pattern (29 bp):
CACCGGTAACAATATATTTCCCGATCTAA
Found at i:18602582 original size:51 final size:51
Alignment explanation
Indices: 18602506--18602633 Score: 170
Period size: 51 Copynumber: 2.5 Consensus size: 51
18602496 TTAGCAGTAA
* *
18602506 AGCGCGCCCCCTGCACCGCGCTATACGATGATTTGGTGC-CACATG-GGGTAT
1 AGCGCGCCCCCTGCACCGCGCTATACGATGATCT-G-GCACACACGTGGGTAT
* *
18602557 AGCGCGCCCCCTGCACCACGCTATACGATGATCTGGCATACACGTGGGTAT
1 AGCGCGCCCCCTGCACCGCGCTATACGATGATCTGGCACACACGTGGGTAT
* *
18602608 AGCGCGGCCCCTGCAGCGCGCTATAC
1 AGCGCGCCCCCTGCACCGCGCTATAC
18602634 CTAGATATCT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
49 2 0.03
50 5 0.07
51 61 0.90
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (51 bp):
AGCGCGCCCCCTGCACCGCGCTATACGATGATCTGGCACACACGTGGGTAT
Found at i:18602785 original size:12 final size:10
Alignment explanation
Indices: 18602744--18602784 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
18602734 TTTATCACAC
18602744 CAAATTCTCT
1 CAAATTCTCT
18602754 CAAATTCTCT
1 CAAATTCTCT
18602764 -AAATTTCTCT
1 CAAA-TTCTCT
*
18602774 CAAATACTCT
1 CAAATTCTCT
18602784 C
1 C
18602785 TATTTAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 3 0.11
10 22 0.79
11 3 0.11
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:18603047 original size:110 final size:111
Alignment explanation
Indices: 18602908--18603128 Score: 399
Period size: 110 Copynumber: 2.0 Consensus size: 111
18602898 TGGAAATCAT
* *
18602908 ATATCTCTACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAAAGTTTTAATTTAATTTAAATTATTAGTAA
* *
18602973 TATTTAGTT-ATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
18603018 ATATCTCGACACTTTGCTGATACGGTAACATTTTAAAGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAAAGTTTTAATTTAATTTAAATTATTAGTAA
18603083 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
18603129 TTTTTGTAAT
Statistics
Matches: 106, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
110 71 0.67
111 35 0.33
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAAAGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:18604195 original size:143 final size:141
Alignment explanation
Indices: 18603940--18604222 Score: 532
Period size: 143 Copynumber: 2.0 Consensus size: 141
18603930 AGGAGCTACC
18603940 TGATTTAAAAAAGATTAGGGTGCTAATCGATCAAAGGCTGGCACACAGGTATGAATTTAATGTTT
1 TGATTTAAAAAAGATTAGGGTGCTAATCGATCAAAGGCTGGCACACAGGTATGAATTTAATGTTT
18604005 AAAAATTGATTTAGATTATAGTTATATAATTAGATTATTATTTTGAT-AAAATTATATATTATTT
66 AAAAATTGATTTAGATTATAGTTATATAATTAGATTATTATTTTGATAAAAATTATATATTATTT
18604069 GTTTTAGTTTA
131 GTTTTAGTTTA
18604080 TGATTTAAAAAAGATTAGGGTGCTAATCGATCAGAAGGCTGGCACACAGGTATGAATTTTAATGT
1 TGATTTAAAAAAGATTAGGGTGCTAATCGATCA-AAGGCTGGCACACAGGTATGAA-TTTAATGT
18604145 TTAAAAATTGATTTTAGATTATAGTTATATAATTAGATTATTATTTTGATAAAAATTATATATTA
64 TTAAAAATTGA-TTTAGATTATAGTTATATAATTAGATTATTATTTTGATAAAAATTATATATTA
18604210 TTTGTTTTAGTTT
128 TTTGTTTTAGTTT
18604223 GAATGGGTGC
Statistics
Matches: 139, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
140 33 0.24
141 22 0.16
142 19 0.14
143 38 0.27
144 27 0.19
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (141 bp):
TGATTTAAAAAAGATTAGGGTGCTAATCGATCAAAGGCTGGCACACAGGTATGAATTTAATGTTT
AAAAATTGATTTAGATTATAGTTATATAATTAGATTATTATTTTGATAAAAATTATATATTATTT
GTTTTAGTTTA
Found at i:18605288 original size:26 final size:24
Alignment explanation
Indices: 18605216--18605288 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 24
18605206 TTATATTTGT
18605216 ATTTACTTTATTTTGTTAAATTGTA
1 ATTTACTTTATTTTGTTAAATT-TA
* *
18605241 ATTT-TTTTATTATT-TCT-CATTTA
1 ATTTACTTTATT-TTGT-TAAATTTA
18605264 ATACTTACTTTATTTTGTTAAATTT
1 AT--TTACTTTATTTTGTTAAATTT
18605289 GTTGGACTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
23 4 0.11
24 10 0.27
25 12 0.32
26 11 0.30
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (24 bp):
ATTTACTTTATTTTGTTAAATTTA
Found at i:18609045 original size:51 final size:51
Alignment explanation
Indices: 18608969--18609097 Score: 156
Period size: 51 Copynumber: 2.5 Consensus size: 51
18608959 CCCTACGTGG
*
18608969 CGTATAGCGCGCTGC-AGGGGCCGCGCTATA-CCCACGTGTATGCCAGATCAC
1 CGTATAGCGCGCTGCAAGGGG-CGCGCTATACCCCACGTG-ATGCCAAATCAC
* *
18609020 CGTATAGCGCAG-TGCAAGGGGCGCGCTATACCCCACGTGGTGCCAAATCAT
1 CGTATAGCGC-GCTGCAAGGGGCGCGCTATACCCCACGTGATGCCAAATCAC
* * *
18609071 CGTATAACGCGTTGCAGGGGGCGCGCT
1 CGTATAGCGCGCTGCAAGGGGCGCGCT
18609098 TTACTGCTAA
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
50 1 0.01
51 54 0.78
52 14 0.20
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (51 bp):
CGTATAGCGCGCTGCAAGGGGCGCGCTATACCCCACGTGATGCCAAATCAC
Found at i:18610163 original size:32 final size:32
Alignment explanation
Indices: 18610126--18610190 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
18610116 TTTAAGGAGG
*
18610126 AGATAGAGAGTGGGAAGAAAAAAGAAATGAGA
1 AGATAGAGAGTGAGAAGAAAAAAGAAATGAGA
18610158 AGATAGAGAGTGAGAAGAAAAAAGAAATGAGA
1 AGATAGAGAGTGAGAAGAAAAAAGAAATGAGA
18610190 A
1 A
18610191 AAGGAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.58, C:0.00, G:0.32, T:0.09
Consensus pattern (32 bp):
AGATAGAGAGTGAGAAGAAAAAAGAAATGAGA
Found at i:18610463 original size:15 final size:15
Alignment explanation
Indices: 18610436--18610478 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
18610426 ATTTAATTTA
18610436 ATTTTAATAATTTATT
1 ATTTTAAT-ATTTATT
*
18610452 TTTTTAATATTTATT
1 ATTTTAATATTTATT
*
18610467 ATTTTAGTATTT
1 ATTTTAATATTT
18610479 TAATTTTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 17 0.71
16 7 0.29
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
ATTTTAATATTTATT
Found at i:18610464 original size:23 final size:22
Alignment explanation
Indices: 18610432--18610485 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
18610422 TTTAATTTAA
* *
18610432 TTTAATTTTAATAATTTATTTT
1 TTTAATTTTAATAATTTAGTAT
* *
18610454 TTTAATATTTATTATTTTAGTAT
1 TTTAAT-TTTAATAATTTAGTAT
18610477 TTTAATTTT
1 TTTAATTTT
18610486 TGCATTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTAATTTTAATAATTTAGTAT
Found at i:18612234 original size:50 final size:50
Alignment explanation
Indices: 18612137--18612231 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
18612127 AAAAAACATG
* * * *
18612137 AGAACTAGAAAAAAATGTACAGTTAGGTTTTACATTTTTGTACAAAGCTTA
1 AGAACTAGAAAAAAATATACAGTTAGGATTTA-ATTTCTGAACAAAGCTTA
*
18612188 AGAACTA-AAAAAAATATACAGTTATGATTT-ATTTCCTGAACAAA
1 AGAACTAGAAAAAAATATACAGTTAGGATTTAATTT-CTGAACAAA
18612232 AGCATGAGGA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 4 0.11
49 7 0.18
50 20 0.53
51 7 0.18
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (50 bp):
AGAACTAGAAAAAAATATACAGTTAGGATTTAATTTCTGAACAAAGCTTA
Found at i:18612415 original size:17 final size:17
Alignment explanation
Indices: 18612393--18612425 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18612383 TCTTTCTTAT
18612393 ATTTGCATCACCATGAA
1 ATTTGCATCACCATGAA
18612410 ATTTGCATCACCATGA
1 ATTTGCATCACCATGA
18612426 CATAGAAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (17 bp):
ATTTGCATCACCATGAA
Found at i:18612989 original size:20 final size:20
Alignment explanation
Indices: 18612952--18613010 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
18612942 ACACCTTTTA
* *
18612952 CATTTGCAT-TTTGCATTTG
1 CATTCGCATATTTGTATTTG
18612971 CATTCGCATATTTGTATTTG
1 CATTCGCATATTTGTATTTG
** *
18612991 CATTCATATAATTGTATTTG
1 CATTCGCATATTTGTATTTG
18613011 TGCATTTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 8 0.24
20 26 0.76
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.51
Consensus pattern (20 bp):
CATTCGCATATTTGTATTTG
Found at i:18614252 original size:45 final size:46
Alignment explanation
Indices: 18614203--18614290 Score: 142
Period size: 45 Copynumber: 1.9 Consensus size: 46
18614193 GAATATCGAA
* * *
18614203 TGCATTTTATGCATCGATGCAC-ATACCATGCATCGATGCACTTAG
1 TGCATTTGATGCATCGATACACAAGACCATGCATCGATGCACTTAG
18614248 TGCATTTGATGCATCGATACACAAGACCATGCATCGATGCACT
1 TGCATTTGATGCATCGATACACAAGACCATGCATCGATGCACT
18614291 CAGGCTATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 20 0.51
46 19 0.49
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (46 bp):
TGCATTTGATGCATCGATACACAAGACCATGCATCGATGCACTTAG
Found at i:18614369 original size:45 final size:45
Alignment explanation
Indices: 18614320--18614410 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
18614310 GAATGCATTT
18614320 CATGCATCGATGCACTCTTAGTGCACCGATTCACTAAGAGTCCAA
1 CATGCATCGATGCACTCTTAGTGCACCGATTCACTAAGAGTCCAA
18614365 CATGCATCGATGCACTCTTAGTGCACCGATTCACTAAGAGTCCAA
1 CATGCATCGATGCACTCTTAGTGCACCGATTCACTAAGAGTCCAA
18614410 C
1 C
18614411 GGTCAAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (45 bp):
CATGCATCGATGCACTCTTAGTGCACCGATTCACTAAGAGTCCAA
Found at i:18621856 original size:21 final size:21
Alignment explanation
Indices: 18621814--18621857 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
18621804 ACTCCGGGAG
* *
18621814 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTCCTC
* *
18621835 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCACGAGCTCCTC
18621856 CT
1 CT
18621858 CCTCCTCCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTCCTC
Found at i:18623059 original size:45 final size:46
Alignment explanation
Indices: 18623010--18623097 Score: 151
Period size: 45 Copynumber: 1.9 Consensus size: 46
18623000 GAACATCGAA
* *
18623010 TGCATTTTATGCATCGATGCAC-ATACCATGCATCGATGCACTTAG
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
18623055 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACT
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACT
18623098 CACGCTATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 21 0.52
46 19 0.47
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (46 bp):
TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
Found at i:18626180 original size:14 final size:14
Alignment explanation
Indices: 18626163--18626208 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
18626153 AAAGTAGAAC
*
18626163 TAAAAATATAATTT
1 TAAAAATAAAATTT
*
18626177 TAAAAATAAAATAT
1 TAAAAATAAAATTT
18626191 TAACAAATTAAAATTT
1 TAA-AAA-TAAAATTT
18626207 TA
1 TA
18626209 TTTAGTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 15 0.56
15 3 0.11
16 9 0.33
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (14 bp):
TAAAAATAAAATTT
Found at i:18626773 original size:23 final size:23
Alignment explanation
Indices: 18626708--18626758 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
18626698 ACCAAAAGAA
*
18626708 AGAGAAAAACATGCCACAAAGGC
1 AGAGAAAAACATGCCATAAAGGC
18626731 AGAGAAAAACATGCCATAAAGGC
1 AGAGAAAAACATGCCATAAAGGC
18626754 AGAGA
1 AGAGA
18626759 TAAGCGTGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.53, C:0.18, G:0.24, T:0.06
Consensus pattern (23 bp):
AGAGAAAAACATGCCATAAAGGC
Found at i:18631810 original size:21 final size:21
Alignment explanation
Indices: 18631785--18631825 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
18631775 GCATTCTAAC
18631785 TTAAA-ATTCAACATTCAATAA
1 TTAAATATT-AACATTCAATAA
*
18631806 TTAAATATTAACATTGAATA
1 TTAAATATTAACATTCAATA
18631826 TCCATAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (21 bp):
TTAAATATTAACATTCAATAA
Found at i:18635968 original size:4 final size:4
Alignment explanation
Indices: 18635959--18637648 Score: 2938
Period size: 4 Copynumber: 423.5 Consensus size: 4
18635949 AAACAATTCA
* * * * * *
18635959 ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636007 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636055 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636103 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636151 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636199 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636247 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636295 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
18636343 ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
18636391 ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636439 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636487 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636535 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636583 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636630 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636678 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636725 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636773 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636821 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * * * * * *
18636869 ATGT ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636917 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18636965 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637013 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637061 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637107 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637155 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** *
18637203 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGT ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
18637251 ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637299 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637347 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637395 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637443 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
18637491 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * *
18637539 ATAC ATGT ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * * * * * * *
18637587 ATAC ATGT ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18637635 ATAC ATAC ATAC AT
1 ATAC ATAC ATAC AT
18637649 TGTAACAACC
Statistics
Matches: 1648, Mismatches: 34, Indels: 8
0.98 0.02 0.00
Matches are distributed among these distances:
2 2 0.00
3 6 0.00
4 1640 1.00
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:18638467 original size:13 final size:13
Alignment explanation
Indices: 18638423--18638466 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
18638413 CAAATGGCCC
18638423 GACCCGACCCGTT
1 GACCCGACCCGTT
**
18638436 GACCCGACCTATT
1 GACCCGACCCGTT
*
18638449 GACCCTACCCGTT
1 GACCCGACCCGTT
18638462 GACCC
1 GACCC
18638467 TTGACCTCCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.18, C:0.45, G:0.18, T:0.18
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:18639810 original size:17 final size:19
Alignment explanation
Indices: 18639785--18639823 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
18639775 ATATCTGTAT
18639785 TATTAATATTT-TGTTCTA
1 TATTAATATTTATGTTCTA
18639803 TATT-ATATTTAATGTTCTA
1 TATTAATATTT-ATGTTCTA
18639822 TA
1 TA
18639824 AGTTGTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 4 0.21
19 9 0.47
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TATTAATATTTATGTTCTA
Found at i:18645760 original size:17 final size:19
Alignment explanation
Indices: 18645735--18645773 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
18645725 ATATCTGTAT
18645735 TATTAATATTT-TGTTCTA
1 TATTAATATTTATGTTCTA
18645753 TATT-ATATTTAATGTTCTA
1 TATTAATATTT-ATGTTCTA
18645772 TA
1 TA
18645774 AGTTGTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 4 0.21
19 9 0.47
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TATTAATATTTATGTTCTA
Found at i:18645867 original size:4 final size:4
Alignment explanation
Indices: 18645852--18645905 Score: 99
Period size: 4 Copynumber: 13.5 Consensus size: 4
18645842 TCTGGGGGGT
*
18645852 TACA TGCA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
18645900 TACA TA
1 TACA TA
18645906 ATCGAACTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:18646527 original size:4 final size:4
Alignment explanation
Indices: 18646518--18647012 Score: 870
Period size: 4 Copynumber: 126.0 Consensus size: 4
18646508 TCAATTCAAT
18646518 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
18646566 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
18646614 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
18646662 CATA CATA CATA CATA CATA CATA CATA C--A CATA CAGA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
18646708 CATA CATA -ATA CATA CATA C--A CATA CATA CAATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA C-ATA CATA CATA CATA
18646754 CATA CATA CATA -ATA CATA CATA CATA CATA CATA C-TA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
18646800 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
18646848 CAT- CAATA CATA CATA CATA CATA CATA CATA CATA CCATA CATA CATA
1 CATA C-ATA CATA CATA CATA CATA CATA CATA CATA -CATA CATA CATA
18646897 C--A CATA CATA CATA C--A CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
18646941 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
18646989 CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA
18647013 ATCGAACTAT
Statistics
Matches: 474, Mismatches: 2, Indels: 30
0.94 0.00 0.06
Matches are distributed among these distances:
2 8 0.02
3 10 0.02
4 447 0.94
5 9 0.02
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:18650594 original size:66 final size:66
Alignment explanation
Indices: 18650516--18650647 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
18650506 TAGAATTAAC
18650516 CTTAACTTTTCCATTAAATTCGTAATGATCCTTCATCCTTATGATAATTTCACATTGACTACTAA
1 CTTAACTTTTCCATTAAATTCGTAATGATCCTTCATCCTTATGATAATTTCACATTGACTACTAA
18650581 A
66 A
18650582 CTTAACTTTTCCATTAAATTCGTAATGATCCTTCATCCTTATGATAATTTCACATTGACTACTAA
1 CTTAACTTTTCCATTAAATTCGTAATGATCCTTCATCCTTATGATAATTTCACATTGACTACTAA
18650647 A
66 A
18650648 ATTTCCAGCA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (66 bp):
CTTAACTTTTCCATTAAATTCGTAATGATCCTTCATCCTTATGATAATTTCACATTGACTACTAA
A
Found at i:18659804 original size:129 final size:126
Alignment explanation
Indices: 18659512--18659779 Score: 407
Period size: 129 Copynumber: 2.1 Consensus size: 126
18659502 CTCCGATTGG
* *
18659512 GAGTATCGATACTCTACCCATGGTACCGATACTCCCATAAGTAATGATACCAAAATGGTATACTA
1 GAGTATCGATACTCTACCCATAGTACCGATACTCTCATAAGTAATGATACCAAAATGGTATACTA
18659577 AAATTTGTGAAGTTTGCTCGGTATCAATACTAACCTACGAGTATTGAAACCAAGCCATTAAT
66 AAATTTGTGAAGTTTGCTCGGTATCAATACTAACCTACGAGTATTGAAACCAAGCCATT-AT
* *
18659639 CGGAGTATCGATACTCTACCCATGGTACCGATACTCTCATAAGTACTGATACCAAAATGGTATAC
1 --GAGTATCGATACTCTACCCATAGTACCGATACTCTCATAAGTAATGATACCAAAATGGTATAC
* * *
18659704 TAAAATTTGTTAAGTTTGCTCGGTTTATCCATACTACCCTACGAGTATTGAAACCAAGCCA-T-T
64 TAAAATTTGTGAAGTTTGCTCGG--TATCAATACTAACCTACGAGTATTGAAACCAAGCCATTAT
18659767 -AGTATCGATACTC
1 GAGTATCGATACTC
18659780 CTTGAGGAAG
Statistics
Matches: 132, Mismatches: 5, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
125 13 0.10
128 1 0.01
129 83 0.63
130 1 0.01
131 34 0.26
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (126 bp):
GAGTATCGATACTCTACCCATAGTACCGATACTCTCATAAGTAATGATACCAAAATGGTATACTA
AAATTTGTGAAGTTTGCTCGGTATCAATACTAACCTACGAGTATTGAAACCAAGCCATTAT
Found at i:18662834 original size:21 final size:23
Alignment explanation
Indices: 18662808--18662850 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
18662798 TGGATAGGCA
*
18662808 ATCAAC-CTTTCCTTT-AAAAAT
1 ATCAACACTTTCATTTCAAAAAT
18662829 ATCAACACTTTCATTTCAAAAA
1 ATCAACACTTTCATTTCAAAAA
18662851 GTCGACATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (23 bp):
ATCAACACTTTCATTTCAAAAAT
Found at i:18663160 original size:478 final size:478
Alignment explanation
Indices: 18662121--18663597 Score: 1740
Period size: 478 Copynumber: 3.0 Consensus size: 478
18662111 TATCTTTAGT
* * **
18662121 ATATTTTGAGACTATAAATACCCCTTAGGGTGAAACTTGAGAATGTATTACTTTACTTTTGATTT
1 ATATTTTGAGACTATAAATACCCCTTA-AGTGAAACTTGAGAATCTACCACTTTACTTTTGATTT
* * * * * * * *
18662186 ATAAAATTTTCTCAATTTATTTAAAAGATTATTATTTTTATTTACCCAATGGCTTTGCGGTGACT
65 ATAAAATTTTCTC--------T---AG-GT-TT-TTTTCATTTAGCCGATGACTTAGAGATGACT
* * * * * * *
18662251 CAGTTCATATTACTGAGAATTGAAAAGAACTTAATATATTCGGATATCATTCTTAATTTTATGCA
116 CAATTCATATT-GTGAGAATTGAAAA-AACTTAAAATCTTTGGATATTATTCTTAATTTTATGTA
* * * *
18662316 AATTTGGATTGGCAATTGGTCTTTCCTTTAAAAATCTCAACATTTTCATTTCAAAAAGTCGACAT
179 AACTTGGATTGGCAATCGGCCTTTCCTTTAAAAATATCAACATTTTCATTTCAAAAAGTCGACAT
18662381 TGGTCT-AGATGTTGTTCTAATTTACAGTTGGGAGGAAGAATCAGCTGGTAGTAAATTCAACTTC
244 TGGTCTGA-ATGTTGTTCTAATTTACAGTTGGGAGGAAGAATCAGCTGGTAGTAAATTCAA-TTC
* * * * *
18662445 CTATGAACACATTTAGCGGCAGTTCGCTAAGGGAAATAGAGATCGGATTCGATTCTCATTGAGAC
307 CTATGAACACACTTAGAGGCAGTTCGCTAAGGGAAATTGAGATCAGATTTGATTCTCATTGAGAC
** * * *
18662510 AACATAATCCGAGTCATACTTTTTCAATGCTTAAAGTTGTTTTGGTGATAAGGGA-GATTGTCGT
372 AACATAATCCGAGTCAGGCTTTTCCAATGCTTAAAGTTGTTTTAGTGATAA-CGACGATTGTCGT
* * *
18662574 GGTTAGTCGAATCAAGGACTGAATTTCTAAGATTGAATTGAGA
436 GGTTAGTCCAATCAAGGACTGAATTTCTAAGATTGACTTGGGA
* * **
18662617 ATATTTTGAGACTATAAATACCCCTTAGGTGAAACTTGAGAATGTACTGCTTTACTTTTGATTTA
1 ATATTTTGAGACTATAAATACCCCTTAAGTGAAACTTGAGAATCTACCACTTTACTTTTGATTTA
18662682 TAAAATTTTCTC-AGGTTTTTTTCATTTAGCC-ACTGACTTAG-GATGACTCAATTCATATTGTG
66 TAAAATTTTCTCTAGGTTTTTTTCATTTAGCCGA-TGACTTAGAGATGACTCAATTCATATTGTG
* * * * *
18662744 AGAATGGAAAAACACTTAAAATCTTTGGATATTATTCTTAATTTTCTATACACTTGGATAGGCAA
130 AGAATTGAAAAA-ACTTAAAATCTTTGGATATTATTCTTAATTTTATGTAAACTTGGATTGGCAA
** * *
18662809 TCAACCTTTCCTTTAAAAATATCAACACTTTCATTTCAAAAAGTCGACATTGGTTTGAATGTTGT
194 TCGGCCTTTCCTTTAAAAATATCAACATTTTCATTTCAAAAAGTCGACATTGGTCTGAATGTTGT
*
18662874 TCTAATTTACAGTTGGGAGGAATAATCAGCTGGTAGTAAATTCAATTTCCTATGAACACACTTAG
259 TCTAATTTACAGTTGGGAGGAAGAATCAGCTGGTAGTAAATTCAA-TTCCTATGAACACACTTAG
* * * *
18662939 AAGCAGTTCACTAAGGGAAATTGAGATTAGATTTGATTCTCATTGAGACAACATAATCCGAGTCG
323 AGGCAGTTCGCTAAGGGAAATTGAGATCAGATTTGATTCTCATTGAGACAACATAATCCGAGTCA
* * * * *
18663004 GGCTTTTCCAGTGCTTAAAGTTGTTTTAATGATAACGACAATTGTCATGGTTAGTCCAATCAAGA
388 GGCTTTTCCAATGCTTAAAGTTGTTTTAGTGATAACGACGATTGTCGTGGTTAGTCCAATCAAGG
*
18663069 ACTGAATTTCTAAGATTGACTTGGGG
453 ACTGAATTTCTAAGATTGACTTGGGA
* *
18663095 ATTTTTTGAGACTATTAATACCCCTTAAGTGAAACTTGAGAATCTACCACTTTACTTTTGATTTA
1 ATATTTTGAGACTATAAATACCCCTTAAGTGAAACTTGAGAATCTACCACTTTACTTTTGATTTA
* *
18663160 TAAAATTTTCTCGATTTTTTTAAAAGTTTTTTTTCATTTTGCCGATGACTTAGAGATGACTCAAT
66 TAAAATTTTCTC--------T---AGGTTTTTTTCATTTAGCCGATGACTTAGAGATGACTCAAT
*
18663225 TCATATTGTGAGAATTGAAAAGTACTTAAAATCTTTGTATATTTCAGATATTATTCTTAATTTTA
120 TCATATTGTGAGAATTGAAAA-AACTTAAAATCTTTG---------GATATTATTCTTAATTTTA
*
18663290 TGTAAACTTGGATTGGCAATCGGCCTTTCCTTTAAAAATATCAACATTTTCATTTCAAAAAGTCA
175 TGTAAACTTGGATTGGCAATCGGCCTTTCCTTTAAAAATATCAACATTTTCATTTCAAAAAGTCG
* * * * * * * * *
18663355 ATATTGGTCTGGACGTTGTTCTGATTTATAGTTGGGAGGAAGAATCTGTTGGTAGCAAATTCAAC
240 ACATTGGTCTGAATGTTGTTCTAATTTACAGTTGGGAGGAAGAATCAGCTGGTAGTAAATTCAAT
*
18663420 TCCTTATGAACACACTTAGAGGCGGTTCGCTAAGGGAAATTGAGATCAGATTTGATTCTCATTGA
305 TCC-TATGAACACACTTAGAGGCAGTTCGCTAAGGGAAATTGAGATCAGATTTGATTCTCATTGA
* * ** * * * * *
18663485 GACAATATAATCCAAGTTTGGTTTTTCCAACGCTTAAAGTTATTTTAGTGCTAACGGCGATTGTC
369 GACAACATAATCCGAGTCAGGCTTTTCCAATGCTTAAAGTTGTTTTAGTGATAACGACGATTGTC
*
18663550 GTGGTTATTCCAATCAAGGACTGAATTTCTAAGATTGACTTGGGA
434 GTGGTTAGTCCAATCAAGGACTGAATTTCTAAGATTGACTTGGGA
18663595 ATA
1 ATA
18663598 CCAGTTTATC
Statistics
Matches: 849, Mismatches: 103, Indels: 54
0.84 0.10 0.05
Matches are distributed among these distances:
477 3 0.00
478 374 0.44
479 18 0.02
480 17 0.02
481 2 0.00
482 1 0.00
483 2 0.00
490 25 0.03
491 46 0.05
495 48 0.06
496 27 0.03
499 3 0.00
500 283 0.33
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (478 bp):
ATATTTTGAGACTATAAATACCCCTTAAGTGAAACTTGAGAATCTACCACTTTACTTTTGATTTA
TAAAATTTTCTCTAGGTTTTTTTCATTTAGCCGATGACTTAGAGATGACTCAATTCATATTGTGA
GAATTGAAAAAACTTAAAATCTTTGGATATTATTCTTAATTTTATGTAAACTTGGATTGGCAATC
GGCCTTTCCTTTAAAAATATCAACATTTTCATTTCAAAAAGTCGACATTGGTCTGAATGTTGTTC
TAATTTACAGTTGGGAGGAAGAATCAGCTGGTAGTAAATTCAATTCCTATGAACACACTTAGAGG
CAGTTCGCTAAGGGAAATTGAGATCAGATTTGATTCTCATTGAGACAACATAATCCGAGTCAGGC
TTTTCCAATGCTTAAAGTTGTTTTAGTGATAACGACGATTGTCGTGGTTAGTCCAATCAAGGACT
GAATTTCTAAGATTGACTTGGGA
Found at i:18667920 original size:19 final size:19
Alignment explanation
Indices: 18667896--18667936 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
18667886 AGTTACTTGT
18667896 GTGATCAGATATAACCGGA
1 GTGATCAGATATAACCGGA
18667915 GTGATCAGATATAACCGGA
1 GTGATCAGATATAACCGGA
18667934 GTG
1 GTG
18667937 GTTTGAACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (19 bp):
GTGATCAGATATAACCGGA
Found at i:18689702 original size:21 final size:22
Alignment explanation
Indices: 18689633--18689714 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 22
18689623 ATAGGGCAGA
* *
18689633 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
* *
18689655 GGGAACCGATTTCCCCTTTGAAT
1 GGGAACCGA-TTCCCCCTTGAAG
18689678 GGGAACCGATTCCCTCCTTG-A-
1 GGGAACCGATTCCC-CCTTGAAG
* *
18689699 GGGAATCGATACCCCC
1 GGGAACCGATTCCCCC
18689715 CACGGGTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
20 2 0.04
21 12 0.24
22 14 0.27
23 23 0.45
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.22
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:18700885 original size:14 final size:14
Alignment explanation
Indices: 18700868--18700907 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
18700858 TCCTCTTTTT
18700868 TTATTTATATTATA
1 TTATTTATATTATA
*
18700882 TTATTTTTATTATA
1 TTATTTATATTATA
18700896 TATATCTTATAT
1 T-TAT-TTATAT
18700908 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:18700889 original size:23 final size:23
Alignment explanation
Indices: 18700831--18700900 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 23
18700821 TATATTTTTA
* *
18700831 ATTATATTTTTTATTTATTTACTAT
1 ATTATTTTTTTTATTTA--TATTAT
*
18700856 ATTCCTCTTTTTTTATTTATATTAT
1 ATT-AT-TTTTTTTATTTATATTAT
* *
18700881 ATTATTTTTATTATATATAT
1 ATTATTTTTTTTATTTATAT
18700901 CTTATATCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
23 13 0.35
24 1 0.03
25 11 0.30
26 1 0.03
27 11 0.30
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (23 bp):
ATTATTTTTTTTATTTATATTAT
Found at i:18700899 original size:2 final size:2
Alignment explanation
Indices: 18700892--18700937 Score: 60
Period size: 2 Copynumber: 23.5 Consensus size: 2
18700882 TTATTTTTAT
*
18700892 TA TA TA TA TC T- TA TA TCA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
18700933 TA TA T
1 TA TA T
18700938 GTATTAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
1 2 0.05
2 36 0.90
3 2 0.05
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18701144 original size:38 final size:36
Alignment explanation
Indices: 18701096--18701167 Score: 92
Period size: 36 Copynumber: 1.9 Consensus size: 36
18701086 TGTTTTTCTT
18701096 CTTAATATTATGTATATCT-TTATTTTTTATTTGTTTAA
1 CTTAATATTA--TATATCTATTA-TTTTTATTTGTTTAA
* *
18701134 CTTAGTATTATATATGTATTATTTTTATTTGTTT
1 CTTAATATTATATATCTATTATTTTTATTTGTTT
18701168 TAGTAAATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 19 0.61
37 3 0.10
38 9 0.29
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.64
Consensus pattern (36 bp):
CTTAATATTATATATCTATTATTTTTATTTGTTTAA
Found at i:18701332 original size:7 final size:7
Alignment explanation
Indices: 18701315--18701353 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
18701305 TTTTTACGTG
18701315 TTTTGTTA
1 TTTT-TTA
18701323 TTTTTTA
1 TTTTTTA
18701330 TTTTTTA
1 TTTTTTA
18701337 TTTTTTTA
1 -TTTTTTA
*
18701345 TTTATTA
1 TTTTTTA
18701352 TT
1 TT
18701354 CTCACGTTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 18 0.62
8 11 0.38
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (7 bp):
TTTTTTA
Found at i:18701341 original size:15 final size:15
Alignment explanation
Indices: 18701323--18701353 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18701313 TGTTTTGTTA
*
18701323 TTTTTTATTTTTTAT
1 TTTTTTATTTATTAT
18701338 TTTTTTATTTATTAT
1 TTTTTTATTTATTAT
18701353 T
1 T
18701354 CTCACGTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTATTTATTAT
Found at i:18706420 original size:106 final size:106
Alignment explanation
Indices: 18706297--18706619 Score: 459
Period size: 106 Copynumber: 3.0 Consensus size: 106
18706287 ATATCGTGCC
* *
18706297 ACTCGAGACAACACAAGTTCAACTCCACAACGAAGGGACGACTGGTTGTCAACAAATAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
*
18706362 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTAAACTTCACAGCGAAGGATATTGG
* *
18706403 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTAAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
* *
18706468 AATTTCGGAGTCAATTTAAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTAAACTTCACAGCGAAGGATATTGG
* * * * * **
18706509 ACTCGAGGCAACATAAGCTCAACTTCACAACGAAGGGGCGACTGGCTGTCAACAAACAATTTCTT
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
* * * * *
18706574 AGTTCCAAAGCCAATTTTAACTTCAC-GACGGAGGATATTGG
66 AATTTCAGAGCCAATTTAAACTTCACAG-CGAAGGATATTGG
18706615 ACTCG
1 ACTCG
18706620 GAACAATACA
Statistics
Matches: 193, Mismatches: 23, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
105 1 0.01
106 192 0.99
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.22
Consensus pattern (106 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
AATTTCAGAGCCAATTTAAACTTCACAGCGAAGGATATTGG
Found at i:18706907 original size:29 final size:28
Alignment explanation
Indices: 18706874--18706960 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 28
18706864 GACAGTTTCT
18706874 CTTGAAACATAAACATTGAAAACAATTCC
1 CTTGAAACATAAACATTGAAAAC-ATTCC
* ** *
18706903 CTTGAAAC--GAA-ATT-TTATC--TCC
1 CTTGAAACATAAACATTGAAAACATTCC
18706925 CTTGAAACATAAACATTGAAAACATTTCC
1 CTTGAAACATAAACATTGAAAACA-TTCC
18706954 CTTGAAA
1 CTTGAAA
18706961 TAAATTTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
22 11 0.26
24 2 0.05
25 5 0.12
26 5 0.12
27 2 0.05
29 18 0.42
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.29
Consensus pattern (28 bp):
CTTGAAACATAAACATTGAAAACATTCC
Found at i:18706954 original size:51 final size:50
Alignment explanation
Indices: 18706874--18706978 Score: 174
Period size: 51 Copynumber: 2.1 Consensus size: 50
18706864 GACAGTTTCT
18706874 CTTGAAACATAAACATTGAAAACAATTCCCTTGAAACGAAATTTTATCTCC
1 CTTGAAACATAAACATTGAAAACAATTCCCTTGAAA-GAAATTTTATCTCC
* * *
18706925 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCG
1 CTTGAAACATAAACATTGAAAACAATTCCCTTGAAAGAAATTTTATCTCC
18706975 CTTG
1 CTTG
18706979 GGGTAGTTTC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
50 16 0.31
51 35 0.69
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (50 bp):
CTTGAAACATAAACATTGAAAACAATTCCCTTGAAAGAAATTTTATCTCC
Found at i:18707040 original size:102 final size:102
Alignment explanation
Indices: 18706925--18707164 Score: 372
Period size: 102 Copynumber: 2.4 Consensus size: 102
18706915 TTTTATCTCC
* *
18706925 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGGGGTAGTTTCC
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCC
* *
18706990 CTTGAAACAAAATTTTGTATCCCTTGAGATATTTTCT
66 CTTGAAACAAAATTTTATATCCCTTGAGATAGTTTCT
* * * * *
18707027 CTTGAAACATAAACATTAAAAACATTTCCTTTGAAATTAATTTTGTCTCTCTTGAGATAGTTTCC
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCC
*
18707092 CTTGAAACAAAATTTTATCTCCCTTGAGATAGTTTCT
66 CTTGAAACAAAATTTTATATCCCTTGAGATAGTTTCT
* *
18707129 CTTGAAACATAAACCTTGAAAACGTTTCCCTTGAAA
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAA
18707165 CACAAAATAT
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 124 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (102 bp):
CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCC
CTTGAAACAAAATTTTATATCCCTTGAGATAGTTTCT
Found at i:18707118 original size:37 final size:37
Alignment explanation
Indices: 18707065--18707137 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
18707055 CTTTGAAATT
* *
18707065 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAA
1 AATTTTATCTCCCTTGAGATAGTTTCCCTTGAAACAA
*
18707102 AATTTTATCTCCCTTGAGATAGTTTCTCTTGAAACA
1 AATTTTATCTCCCTTGAGATAGTTTCCCTTGAAACA
18707138 TAAACCTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.41
Consensus pattern (37 bp):
AATTTTATCTCCCTTGAGATAGTTTCCCTTGAAACAA
Found at i:18707252 original size:37 final size:37
Alignment explanation
Indices: 18707202--18707302 Score: 159
Period size: 36 Copynumber: 2.8 Consensus size: 37
18707192 AAAACGAGTT
18707202 TTGAGACAGTTTCCCTTGAAACAAAATCCTGTCTCTC
1 TTGAGACAGTTTCCCTTGAAACAAAATCCTGTCTCTC
* **
18707239 TTGAGATAGTTTCCCTTGAAAC-AAATTTTGTCTCTC
1 TTGAGACAGTTTCCCTTGAAACAAAATCCTGTCTCTC
*
18707275 TTGAAACAGTTTCCCTTGAAACAAAATC
1 TTGAGACAGTTTCCCTTGAAACAAAATC
18707303 TCTGAATATC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
36 32 0.56
37 25 0.44
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.35
Consensus pattern (37 bp):
TTGAGACAGTTTCCCTTGAAACAAAATCCTGTCTCTC
Found at i:18707381 original size:37 final size:36
Alignment explanation
Indices: 18707319--18707437 Score: 134
Period size: 36 Copynumber: 3.3 Consensus size: 36
18707309 TATCTTTTCC
** *
18707319 TTGAAACAAATTTCATCTCCCTTGAGACAGTTTCTT
1 TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTT
* * *
18707355 TT-AGAACTAAGTTTTGTCTCTCTTGAGATAGTTTATT
1 TTGA-AAC-AAATTTTGTCTCTCTTGAGACAGTTTCTT
*
18707392 TTGAAACAAATTTTGTC-CATCTTGAGACAGTTTCTC
1 TTGAAACAAATTTTGTCTC-TCTTGAGACAGTTTCTT
18707428 TTGAAACAAA
1 TTGAAACAAA
18707438 AAAAAACCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
35 2 0.03
36 38 0.55
37 28 0.41
38 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (36 bp):
TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTT
Found at i:18708740 original size:16 final size:18
Alignment explanation
Indices: 18708695--18708762 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 18
18708685 AATTTTACGT
*
18708695 TATTATATA-ATTTTATA
1 TATTATATATATATTATA
*
18708712 TA-TATTTAT-TATTAT-
1 TATTATATATATATTATA
*
18708727 TATT-TATATATATTCTA
1 TATTATATATATATTATA
18708744 TATTATATATATA-TATA
1 TATTATATATATATTATA
18708761 TA
1 TA
18708763 GATGTATTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
15 6 0.15
16 16 0.39
17 11 0.27
18 8 0.20
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTATATATATATTATA
Found at i:18708745 original size:7 final size:7
Alignment explanation
Indices: 18708695--18708761 Score: 57
Period size: 7 Copynumber: 9.4 Consensus size: 7
18708685 AATTTTACGT
18708695 TATTATA
1 TATTATA
*
18708702 TAATTTTA
1 T-ATTATA
*
18708710 TATATATT
1 TAT-TATA
18708718 TATTAT-
1 TATTATA
*
18708724 TATTATT
1 TATTATA
18708731 TA-TATA
1 TATTATA
*
18708737 TATTCTA
1 TATTATA
18708744 TATTATA
1 TATTATA
18708751 TATATATA
1 TAT-TATA
18708759 TAT
1 TAT
18708762 AGATGTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
6 11 0.22
7 20 0.41
8 18 0.37
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (7 bp):
TATTATA
Found at i:18708833 original size:37 final size:34
Alignment explanation
Indices: 18708792--18708873 Score: 103
Period size: 37 Copynumber: 2.3 Consensus size: 34
18708782 ATTTACTATG
18708792 TATATATTTCTTCTTAATATTATATTTTATACGTTTT
1 TATATATTTCTTCTTAATATTATATTTT-T--GTTTT
*
18708829 TATATATATT-TTCTTAATATTCTATTTTTGTTTT
1 TATATAT-TTCTTCTTAATATTATATTTTTGTTTT
*
18708863 TATTTATTTCT
1 TATATATTTCT
18708874 ATATAATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
33 2 0.05
34 12 0.29
36 1 0.02
37 24 0.59
38 2 0.05
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.66
Consensus pattern (34 bp):
TATATATTTCTTCTTAATATTATATTTTTGTTTT
Found at i:18708871 original size:32 final size:36
Alignment explanation
Indices: 18708792--18708888 Score: 100
Period size: 37 Copynumber: 2.8 Consensus size: 36
18708782 ATTTACTATG
18708792 TATATAT-TTCTTCTTAATATTATATTTTATACGTTTT
1 TATATATATT-TTCTTAATATTATATTTTATA-GTTTT
*
18708829 TATATATATTTTCTTAATATTCTATTTT-T-GTTTT
1 TATATATATTTTCTTAATATTATATTTTATAGTTTT
18708863 TAT-T-TA-TTTC-TATATAATTATATTTT
1 TATATATATTTTCTTA-AT-ATTATATTTT
18708889 TACTTTATTT
Statistics
Matches: 55, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
30 2 0.04
31 6 0.11
32 11 0.20
33 1 0.02
34 8 0.15
36 1 0.02
37 24 0.44
38 2 0.04
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (36 bp):
TATATATATTTTCTTAATATTATATTTTATAGTTTT
Found at i:18708901 original size:18 final size:18
Alignment explanation
Indices: 18708880--18708921 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
18708870 TTCTATATAA
18708880 TTATATTTTTACT-TTATT
1 TTAT-TTTTTACTATTATT
*
18708898 TTATTTTTTTCTATTATT
1 TTATTTTTTACTATTATT
18708916 TT-TTTT
1 TTATTTT
18708922 CTTAATATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (18 bp):
TTATTTTTTACTATTATT
Found at i:18712678 original size:18 final size:19
Alignment explanation
Indices: 18712639--18712680 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
18712629 ATCAAAGTTA
*
18712639 AAAATAAAATAGAATGAGAT
1 AAAATAAAATA-AATAAGAT
18712659 AAAATAAAAT-AATAAGAT
1 AAAATAAAATAAATAAGAT
18712677 AAAA
1 AAAA
18712681 GAAAGCAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
20 10 0.48
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (19 bp):
AAAATAAAATAAATAAGAT
Found at i:18713146 original size:14 final size:14
Alignment explanation
Indices: 18713129--18713177 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
18713119 AATACATAAC
18713129 ATTAAATGCTGGAA
1 ATTAAATGCTGGAA
18713143 ATTAAAATGACT-GAA
1 ATT-AAATG-CTGGAA
* *
18713158 ATAAAATGCAGGAA
1 ATTAAATGCTGGAA
18713172 ATTAAA
1 ATTAAA
18713178 GGGGTAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 1 0.03
14 16 0.55
15 10 0.34
16 2 0.07
ACGTcount: A:0.53, C:0.06, G:0.16, T:0.24
Consensus pattern (14 bp):
ATTAAATGCTGGAA
Found at i:18713177 original size:15 final size:15
Alignment explanation
Indices: 18713132--18713177 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
18713122 ACATAACATT
*
18713132 AAATGCTGGAAATTA
1 AAATGCAGGAAATTA
*
18713147 AAATG-ACTGAAA-TA
1 AAATGCA-GGAAATTA
18713161 AAATGCAGGAAATTA
1 AAATGCAGGAAATTA
18713176 AA
1 AA
18713178 GGGGTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.54, C:0.07, G:0.17, T:0.22
Consensus pattern (15 bp):
AAATGCAGGAAATTA
Found at i:18713448 original size:32 final size:32
Alignment explanation
Indices: 18713376--18713467 Score: 112
Period size: 32 Copynumber: 2.8 Consensus size: 32
18713366 ATTAGTTTGT
* * * *
18713376 ACAATAAAATAAAAATATTAGTATGTTAGTACGA
1 ACAATAAAAT-AAAA-GTTAGAATGTTAATACAA
*
18713410 ATAATAAAATAAAAGTTAGAATGTTAATACAA
1 ACAATAAAATAAAAGTTAGAATGTTAATACAA
*
18713442 ACAATAAAGTAAAAGTTAGAATGTTA
1 ACAATAAAATAAAAGTTAGAATGTTA
18713468 GTAAGTTAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
32 38 0.75
33 4 0.08
34 9 0.18
ACGTcount: A:0.55, C:0.04, G:0.12, T:0.28
Consensus pattern (32 bp):
ACAATAAAATAAAAGTTAGAATGTTAATACAA
Found at i:18713972 original size:33 final size:33
Alignment explanation
Indices: 18713932--18713999 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
18713922 GGGAGGAATT
* *
18713932 ATTGGTGATTTGCCCCTAGAATAAGTGTCCAGA
1 ATTGGTGATTTACCCCTAGAATAAGTGACCAGA
18713965 ATTGGTGATTTACCCCTAGAATAAGTGACCAGA
1 ATTGGTGATTTACCCCTAGAATAAGTGACCAGA
18713998 AT
1 AT
18714000 GTAACACAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (33 bp):
ATTGGTGATTTACCCCTAGAATAAGTGACCAGA
Found at i:18718019 original size:24 final size:24
Alignment explanation
Indices: 18717987--18718044 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
18717977 CATGCCATAG
18717987 TTGGGGCCACACGTGATAACACAT
1 TTGGGGCCACACGTGATAACACAT
18718011 TTGGGGCCACACGTGATAACACAT
1 TTGGGGCCACACGTGATAACACAT
18718035 TTGGGGCCAC
1 TTGGGGCCAC
18718045 TCAACCTGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.21
Consensus pattern (24 bp):
TTGGGGCCACACGTGATAACACAT
Found at i:18720980 original size:60 final size:59
Alignment explanation
Indices: 18720901--18721015 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 59
18720891 GTTGTTATAT
** * *
18720901 ATTCAAAACTTTGGGGACCAAATTAAAATGAGAATCATAGTTTAGGGATGAAATTGACAG
1 ATTCAAAACTTTGAAGACCAAATTAAAATGAGAAT-ATAATTTAGAGATGAAATTGACAG
* * *
18720961 ATTCAAAAGTTTGAAGACCAATTTAAAATGAGAGTATAATTTAGAGATGAAATTG
1 ATTCAAAACTTTGAAGACCAAATTAAAATGAGAATATAATTTAGAGATGAAATTG
18721016 GAATATTTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 18 0.38
60 30 0.62
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (59 bp):
ATTCAAAACTTTGAAGACCAAATTAAAATGAGAATATAATTTAGAGATGAAATTGACAG
Found at i:18721028 original size:59 final size:60
Alignment explanation
Indices: 18720901--18721048 Score: 167
Period size: 59 Copynumber: 2.5 Consensus size: 60
18720891 GTTGTTATAT
* ** * * *
18720901 ATTCAAAACTTTGGGGACCAAATTAAAATGAGAATCATAGTTTAGGGATGAAATTGACAG
1 ATTCAAAAGTTTAAGGACCAATTTAAAATGAGAATCATAATTTAGAGATGAAATTGACAG
* *
18720961 ATTCAAAAGTTTGAA-GACCAATTTAAAATGAGAGT-ATAATTTAGAGATGAAATTGGA-AT
1 ATTCAAAAGTTT-AAGGACCAATTTAAAATGAGAATCATAATTTAGAGATGAAATT-GACAG
* *
18721020 ATTTAAAAGTTTAAGGATCAATTTAAAAT
1 ATTCAAAAGTTTAAGGACCAATTTAAAAT
18721049 AAAGGTCATA
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
58 2 0.03
59 42 0.56
60 31 0.41
ACGTcount: A:0.45, C:0.07, G:0.18, T:0.30
Consensus pattern (60 bp):
ATTCAAAAGTTTAAGGACCAATTTAAAATGAGAATCATAATTTAGAGATGAAATTGACAG
Found at i:18721932 original size:24 final size:24
Alignment explanation
Indices: 18721888--18721936 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
18721878 CAAACAATTA
*
18721888 AGGGAATTATCTTTTGTGATTTTT
1 AGGGAATTATCTTTAGTGATTTTT
18721912 AGGGAATTATCTTTAAG-GATTTTT
1 AGGGAATTATCTTT-AGTGATTTTT
18721936 A
1 A
18721937 CAGTTTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (24 bp):
AGGGAATTATCTTTAGTGATTTTT
Found at i:18729527 original size:6 final size:6
Alignment explanation
Indices: 18729516--18729566 Score: 66
Period size: 6 Copynumber: 8.0 Consensus size: 6
18729506 GATTTCCTAT
*
18729516 TTTTAA TTTTAA TATTTAA TTTTAA TATTTAA TTTTAA TATTTTA TTTTAA
1 TTTTAA TTTTAA T-TTTAA TTTTAA T-TTTAA TTTTAA T-TTTAA TTTTAA
18729567 AGGTGCCTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
6 23 0.57
7 17 0.43
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTTAA
Found at i:18729535 original size:13 final size:13
Alignment explanation
Indices: 18729517--18729566 Score: 91
Period size: 13 Copynumber: 3.8 Consensus size: 13
18729507 ATTTCCTATT
18729517 TTTAATTTTAATA
1 TTTAATTTTAATA
18729530 TTTAATTTTAATA
1 TTTAATTTTAATA
18729543 TTTAATTTTAATA
1 TTTAATTTTAATA
*
18729556 TTTTATTTTAA
1 TTTAATTTTAA
18729567 AGGTGCCTCG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATTTTAATA
Found at i:18730278 original size:37 final size:37
Alignment explanation
Indices: 18730205--18730279 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
18730195 GTTGGAAAAT
* *
18730205 ATTTATATATTTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAATTGAAAATCATAAA
* *
18730242 ATTTATATAATTTTTTTTACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAAAATTGAAAATCATAAA
18730279 A
1 A
18730280 AAGTTTAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 14 0.42
38 19 0.58
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAAAAAATTGAAAATCATAAA
Found at i:18756036 original size:55 final size:55
Alignment explanation
Indices: 18755952--18756325 Score: 377
Period size: 55 Copynumber: 6.8 Consensus size: 55
18755942 TGTACTACAT
* * *
18755952 GCACTATGTGTGCAAATCTAAGGAATTCATCATGAGTTGATGAATAACTGTAAAG
1 GCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACTGTAAAG
* * * *
18756007 GCACTATGTGTACAAATCCACGAAATTCATCATGAGTTTATGAATAACCGT-ACG
1 GCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACTGTAAAG
* * *
18756061 AGAACTATGTGTACAAATCCAC-AGAGTTCATCATGAGTTGATGAATAA-TCGTACAA-
1 -GCACTATGTGTGCAAATCCACGA-AATTCATCATGAGTTGATGAATAACT-GTA-AAG
* * *
18756117 GCACTATGTGTGCAATTCCAC-AGAATTCATCATGAGTTGATGAATAATTGTACAG
1 GCACTATGTGTGCAAATCCACGA-AATTCATCATGAGTTGATGAATAACTGTAAAG
* * * *
18756172 GTACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAA-TCGTACAT
1 GCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACT-GTAAAG
* * * * * * * *
18756227 GCACTATGTGTTCAATTCCATGGATTTCATCATAAGTTGATGAATAACCGTACAG
1 GCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACTGTAAAG
* * *
18756282 GAACTATGTGTGC-AA-CGCACAAAATTCATTATGAGTTGATGAAT
1 GCACTATGTGTGCAAATC-CACGAAATTCATCATGAGTTGATGAAT
18756326 TACAGTATAT
Statistics
Matches: 270, Mismatches: 38, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
53 1 0.00
54 27 0.10
55 240 0.89
56 1 0.00
57 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (55 bp):
GCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACTGTAAAG
Found at i:18756147 original size:110 final size:109
Alignment explanation
Indices: 18755954--18756325 Score: 477
Period size: 110 Copynumber: 3.4 Consensus size: 109
18755944 TACTACATGC
*
18755954 ACTATGTGTGCAAATCTA-AGGAATTCATCATGAGTTGATGAATAA-CTGTA-AAGGCACTATGT
1 ACTATGTGTGCAAATCCACA-GAATTCATCATGAGTTGATGAATAATC-GTACAA-GCACTATGT
* *
18756016 GTACAAATCCACGAAATTCATCATGAGTTTATGAATAACCGTAC-GAGA
63 GTACAATTCCACG-AATTCATCATGAGTTGATGAATAACCGTACAG-GA
* * *
18756064 ACTATGTGTACAAATCCACAGAGTTCATCATGAGTTGATGAATAATCGTACAAGCACTATGTGTG
1 ACTATGTGTGCAAATCCACAGAATTCATCATGAGTTGATGAATAATCGTACAAGCACTATGTGTA
** *
18756129 CAATTCCACAGAATTCATCATGAGTTGATGAATAATTGTACAGGT
66 CAATTCCAC-GAATTCATCATGAGTTGATGAATAACCGTACAGGA
* * *
18756174 ACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAATCGTACATGCACTATGTGTT
1 ACTATGTGTGCAAATCCACAGAATTCATCATGAGTTGATGAATAATCGTACAAGCACTATGTGTA
* * *
18756239 CAATTCCATGGATTTCATCATAAGTTGATGAATAACCGTACAGGA
66 CAATTCCA-CGAATTCATCATGAGTTGATGAATAACCGTACAGGA
* *
18756284 ACTATGTGTGC-AA-CGCACAAAATTCATTATGAGTTGATGAAT
1 ACTATGTGTGCAAATC-CACAGAATTCATCATGAGTTGATGAAT
18756326 TACAGTATAT
Statistics
Matches: 232, Mismatches: 23, Indels: 15
0.86 0.09 0.06
Matches are distributed among these distances:
108 1 0.00
109 26 0.11
110 199 0.86
111 6 0.03
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (109 bp):
ACTATGTGTGCAAATCCACAGAATTCATCATGAGTTGATGAATAATCGTACAAGCACTATGTGTA
CAATTCCACGAATTCATCATGAGTTGATGAATAACCGTACAGGA
Found at i:18756235 original size:165 final size:164
Alignment explanation
Indices: 18755947--18756325 Score: 503
Period size: 165 Copynumber: 2.3 Consensus size: 164
18755937 CTAAGTGTAC
* *
18755947 TACATGCACTATGTGTGCAAATCTA-AGGAATTCATCATGAGTTGATGAATAACTGTAAAGGCAC
1 TACAAGCACTATGTGTGC-AATCCACA-GAATTCATCATGAGTTGATGAATAACTGTAAAGGCAC
*
18756011 TATGTGTACAAATCCACGAAATTCATCATGAGTTTATGAATAACCGTACGAGAACTATGTGTACA
64 TATGTGTACAAATCCACGAAATTCATCATGAGTTGATGAATAACCGTACGAGAACTATGTGTACA
* *
18756076 AATCCACAGAGTTCATCATGAGTTGATGAATAATCG
129 AATCCACAGAGTTCATCATAAGTTGATGAATAACCG
* * *
18756112 TACAAGCACTATGTGTGCAATTCCACAGAATTCATCATGAGTTGATGAATAATTGTACAGGTACT
1 TACAAGCACTATGTGTGCAA-TCCACAGAATTCATCATGAGTTGATGAATAACTGTAAAGGCACT
* * * * *
18756177 ATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAATCGTAC-ATGCACTATGTGTTCA
65 ATGTGTACAAATCCACGAAATTCATCATGAGTTGATGAATAACCGTACGA-GAACTATGTGTACA
* ** *
18756241 ATTCCATGGATTTCATCATAAGTTGATGAATAACCG
129 AATCCACAGAGTTCATCATAAGTTGATGAATAACCG
* * * *
18756277 TACAGGAACTATGTGTGCAA-CGCACAAAATTCATTATGAGTTGATGAAT
1 TACAAGCACTATGTGTGCAATC-CACAGAATTCATCATGAGTTGATGAAT
18756326 TACAGTATAT
Statistics
Matches: 189, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
163 1 0.01
164 28 0.15
165 159 0.84
166 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (164 bp):
TACAAGCACTATGTGTGCAATCCACAGAATTCATCATGAGTTGATGAATAACTGTAAAGGCACTA
TGTGTACAAATCCACGAAATTCATCATGAGTTGATGAATAACCGTACGAGAACTATGTGTACAAA
TCCACAGAGTTCATCATAAGTTGATGAATAACCG
Found at i:18763078 original size:55 final size:55
Alignment explanation
Indices: 18762916--18763351 Score: 572
Period size: 55 Copynumber: 8.0 Consensus size: 55
18762906 GTGTACTACC
** * * *
18762916 GACACTATGTGTGCAAATCCATAGAATTCGTCACGAGTTCATGAATAACCGTACA
1 GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACA
* *
18762971 TG-CACTATGTGTGCAAATCCACGCAATTCGT-ATGAGTTGATGAATAACCGTACA
1 -GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACA
* * *
18763025 GAAACTATATGTGCAAATCCACGGAGTTCATCATGAGTTGATGAATAACCGTACA
1 GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACA
* * *
18763080 AACACTATGTGTGCAAATCAATGGAATTCATCATGAGTTGATGAATAACCGTACA
1 GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACA
* * * * * *
18763135 GGCACTATGTGTGCAATTCCACGTAATTAATCATGACTTGATGAATAACCGTATA
1 GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACA
* * * *
18763190 GGCACTGTGTGTGAAAATCCACGGAATTCATCATGAGTTAATGAATAACCGTACA
1 GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACA
* * ** *
18763245 GGCACTATGTGTGCAATTCCACATAATTCATCATGAGTTGATGAATAACCGTATA
1 GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACA
* *
18763300 GACACTATGTGTGC-AACCCACGGAATTCATCATGAGTTGATGAATTACCGTA
1 GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTA
18763352 TATGCACTAC
Statistics
Matches: 332, Mismatches: 46, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
53 1 0.00
54 78 0.23
55 252 0.76
56 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (55 bp):
GACACTATGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATAACCGTACA
Found at i:18766923 original size:29 final size:30
Alignment explanation
Indices: 18766886--18766943 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
18766876 TTTTAGTTAG
*
18766886 TGGCCAAAGCATAAATTTTG-AAAGTTTAA
1 TGGCCAAAGCATAAATTTAGAAAAGTTTAA
* *
18766915 TGGCTAAAGTATAAATTTAGAAAAGTTTA
1 TGGCCAAAGCATAAATTTAGAAAAGTTTA
18766944 GAGACCAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.43, C:0.07, G:0.17, T:0.33
Consensus pattern (30 bp):
TGGCCAAAGCATAAATTTAGAAAAGTTTAA
Found at i:18766954 original size:30 final size:29
Alignment explanation
Indices: 18766889--18766955 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
18766879 TAGTTAGTGG
* * *
18766889 CCAAAGCATAAATTTTGAAAGTTTAATGG
1 CCAAAGTATAAATTTAGAAAGTTTAATGA
*
18766918 CTAAAGTATAAATTTAGAAAAGTTTAGA-GA
1 CCAAAGTATAAATTTAG-AAAGTTTA-ATGA
18766948 CCAAAGTA
1 CCAAAGTA
18766956 ATAATTTTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 14 0.45
30 16 0.52
31 1 0.03
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.28
Consensus pattern (29 bp):
CCAAAGTATAAATTTAGAAAGTTTAATGA
Found at i:18768828 original size:24 final size:24
Alignment explanation
Indices: 18768800--18768853 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
18768790 GCGATGAGCT
18768800 AGTGACGAAGTTACGATGGTAATA
1 AGTGACGAAGTTACGATGGTAATA
18768824 AGTGACGAAGTTACGATGGTAATA
1 AGTGACGAAGTTACGATGGTAATA
18768848 AGTGAC
1 AGTGAC
18768854 TCTTAAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.37, C:0.09, G:0.30, T:0.24
Consensus pattern (24 bp):
AGTGACGAAGTTACGATGGTAATA
Found at i:18772785 original size:40 final size:40
Alignment explanation
Indices: 18772741--18772819 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
18772731 TTCATAATTG
*
18772741 TGATGAA-AACATTTTGCCACTAGTCTTAGTTGGTGATTTA
1 TGATGAATAA-ATTTTGCCACTAGTCTTAGTTGATGATTTA
* * *
18772781 TGATGAATTATTTTTGTCACTAGTCTTAGTTGATGATTT
1 TGATGAATAAATTTTGCCACTAGTCTTAGTTGATGATTT
18772820 GTGACGATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.46
Consensus pattern (40 bp):
TGATGAATAAATTTTGCCACTAGTCTTAGTTGATGATTTA
Found at i:18773739 original size:105 final size:105
Alignment explanation
Indices: 18773624--18773843 Score: 259
Period size: 105 Copynumber: 2.1 Consensus size: 105
18773614 GTGATAGAGT
* * ** *
18773624 TATTGCTAATAGTGTCGTA-CATTTGAT-AACTAAAAAACT-CTTAGTGTGACAAAATTGGTGGT
1 TATTGATAATAGTATC-TATCATTTGATCAA-TAAAAAA-TACTTAACGTGACAAAATTGATGGT
* *
18773686 CACAAAATATACTATCAGTGTCAAATAAATTT-ATCACAATTTC
63 CACAAAATATACTATCAGTGTCAAAAAAATTTGA-CACAATTTA
* * *
18773729 TATTGATAATAGTATCTATCATTTGGTCAATAAAAAATACTTAACGTGACAATATTGATGGTTAC
1 TATTGATAATAGTATCTATCATTTGATCAATAAAAAATACTTAACGTGACAAAATTGATGGTCAC
* * *
18773794 AAAATATATTTTTAGTGTCAAAAAAATTTGACACAATTTA
66 AAAATATACTATCAGTGTCAAAAAAATTTGACACAATTTA
18773834 TATTGATAAT
1 TATTGATAAT
18773844 TAAAAACGAA
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
104 3 0.03
105 92 0.94
106 3 0.03
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (105 bp):
TATTGATAATAGTATCTATCATTTGATCAATAAAAAATACTTAACGTGACAAAATTGATGGTCAC
AAAATATACTATCAGTGTCAAAAAAATTTGACACAATTTA
Found at i:18775236 original size:13 final size:13
Alignment explanation
Indices: 18775195--18775237 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
18775185 TCAGTCGCTA
18775195 AGTCAACTCAGTTG
1 AGTCAACTCA-TTG
*
18775209 AGTCAACTCACTG
1 AGTCAACTCATTG
*
18775222 AGTCAACTCTTTG
1 AGTCAACTCATTG
18775235 AGT
1 AGT
18775238 TTGATCAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 16 0.62
14 10 0.38
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (13 bp):
AGTCAACTCATTG
Found at i:18775280 original size:22 final size:22
Alignment explanation
Indices: 18775255--18775297 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
18775245 AGTCAACTCG
**
18775255 TTGACAGGTTTGACCGTTAACT
1 TTGACAGGTCAGACCGTTAACT
*
18775277 TTGACCGGTCAGACCGTTAAC
1 TTGACAGGTCAGACCGTTAAC
18775298 CGTTGACTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (22 bp):
TTGACAGGTCAGACCGTTAACT
Found at i:18778677 original size:66 final size:66
Alignment explanation
Indices: 18778569--18778695 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
18778559 ATGAAGACTC
* * *
18778569 TGGCAGGTTCAGTCGATACTGGTAATTCCTTGTATAAATTCAGTAACGGCTGATAATTCCTATCT
1 TGGCAGGTTCAGTCGATACTGGTAATTCCTTGAATAAATTCAGCAACGACTGATAATTCCTATCT
18778634 T
66 T
* * * ** * *
18778635 TGGCAGGTTCAGTCGCTGCTGGTAATTTCGTT-AATAGGTTCAGCACCGACTGGTAATTCCT
1 TGGCAGGTTCAGTCGATACTGGTAA-TTCCTTGAATAAATTCAGCAACGACTGATAATTCCT
18778696 TATGGACCTA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
66 45 0.90
67 5 0.10
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.35
Consensus pattern (66 bp):
TGGCAGGTTCAGTCGATACTGGTAATTCCTTGAATAAATTCAGCAACGACTGATAATTCCTATCT
T
Found at i:18783024 original size:31 final size:32
Alignment explanation
Indices: 18782989--18783091 Score: 79
Period size: 31 Copynumber: 3.2 Consensus size: 32
18782979 GTCGATGCTA
18782989 GTAATTCT-TTTTGTAGGTTCAGCACCAACTG
1 GTAATTCTATTTTGTAGGTTCAGCACCAACTG
* * *
18783020 GTAATTCCTATCTCTAGTAGGTTCAGTCA--ATGCTA
1 GTAATT-CTAT-T-TTGTAGGTTCAG-CACCA-ACTG
* * *
18783055 GTAATT-TCTTTTATAGGTTCAGCACCGACTG
1 GTAATTCTATTTTGTAGGTTCAGCACCAACTG
18783086 GTAATT
1 GTAATT
18783092 ACTTATGGAC
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
30 2 0.04
31 24 0.44
32 3 0.05
33 3 0.05
34 2 0.04
35 19 0.35
36 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (32 bp):
GTAATTCTATTTTGTAGGTTCAGCACCAACTG
Done.