Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 78 of 89
Found at i:18783054 original size:66 final size:66
Alignment explanation
Indices: 18782965--18783091 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
18782955 GGCATGAAGA
* * *
18782965 CTCTAGAAGGTTTAGTCGATGCTAGTAA-TTCTTTTTGTAGGTTCAGCACCAACTGGTAATTCCT
1 CTCTAGAAGGTTCAGTCAATGCTAGTAATTTC-TTTTATAGGTTCAGCACCAACTGGTAATTCCT
18783029 AT
65 AT
* *
18783031 CTCTAGTAGGTTCAGTCAATGCTAGTAATTTCTTTTATAGGTTCAGCACCGACTGGTAATT
1 CTCTAGAAGGTTCAGTCAATGCTAGTAATTTCTTTTATAGGTTCAGCACCAACTGGTAATT
18783092 ACTTATGGAC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 52 0.95
67 3 0.05
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (66 bp):
CTCTAGAAGGTTCAGTCAATGCTAGTAATTTCTTTTATAGGTTCAGCACCAACTGGTAATTCCTA
T
Found at i:18783737 original size:20 final size:18
Alignment explanation
Indices: 18783700--18783735 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
18783690 TGAATATTGT
*
18783700 TAATTTTTTTTGTATTTA
1 TAATTTTTTTTATATTTA
18783718 TAATTTTTTTTATGATTT
1 TAATTTTTTTTAT-ATTT
18783736 TAAGCGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (18 bp):
TAATTTTTTTTATATTTA
Found at i:18792494 original size:213 final size:215
Alignment explanation
Indices: 18792127--18792555 Score: 835
Period size: 213 Copynumber: 2.0 Consensus size: 215
18792117 CTTACTCCAT
18792127 GCAAGCCCTCAAATGACTATTTTAAATTTGTAATCTCTTGACCTCACTCGCCAACTCAGGATCTA
1 GCAAGCCCTCAAATGACTATTTTAAATTTGTAATCTCTTGACCTCACTCGCCAACTCAGGATCTA
18792192 CTCAGAGTTCAGCCAATAATCTTCCATCTTTAGAAAGACTTAAACGTGCCAACATCTCTCTCAGC
66 CTCAGAGTTCAGCCAATAATCTTCCATCTTTAGAAAGACTTAAACGTGCCAACATCTCTCTCAGC
18792257 TCTGAAATTGACTTCCGACTTAATACA-AACCACAATATCTAC-TTCTCTATGTGGTCGTCGATC
131 TCTGAAATTGACTTCCGACTTAATACACAACCACAATATCTACTTTCTCTATGTGGTCGTCGATC
18792320 ACACAATCATAGTCCTTTAA
196 ACACAATCATAGTCCTTTAA
18792340 GCAAGCCCTCAAATGACTATTTTAAATTTGTAATCTCTTGACCTCACTCGCCAACTCAGGATCTA
1 GCAAGCCCTCAAATGACTATTTTAAATTTGTAATCTCTTGACCTCACTCGCCAACTCAGGATCTA
18792405 CTCAGAGTTCAGCCAATAATCTTCCATCTTTAGAAAGACTTAAACGTGCCAACATCTCTCTCAGC
66 CTCAGAGTTCAGCCAATAATCTTCCATCTTTAGAAAGACTTAAACGTGCCAACATCTCTCTCAGC
18792470 TCTGAAATTGACTTCCGACTTAATACATCAACCACAATATCTACTTTCTCTATGTGGTCGTCGAT
131 TCTGAAATTGACTTCCGACTTAATACA-CAACCACAATATCTACTTTCTCTATGTGGTCGTCGAT
18792535 CACACAATCATAGTCCTTTAA
195 CACACAATCATAGTCCTTTAA
18792556 CAATTCAAAC
Statistics
Matches: 213, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
213 157 0.74
215 15 0.07
216 41 0.19
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (215 bp):
GCAAGCCCTCAAATGACTATTTTAAATTTGTAATCTCTTGACCTCACTCGCCAACTCAGGATCTA
CTCAGAGTTCAGCCAATAATCTTCCATCTTTAGAAAGACTTAAACGTGCCAACATCTCTCTCAGC
TCTGAAATTGACTTCCGACTTAATACACAACCACAATATCTACTTTCTCTATGTGGTCGTCGATC
ACACAATCATAGTCCTTTAA
Found at i:18797215 original size:19 final size:19
Alignment explanation
Indices: 18797193--18797235 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
18797183 TTTATTAACG
*
18797193 TAATACTAAAT-TATTATAT
1 TAATACTAAATGTA-TAAAT
*
18797212 TAATATTAAATGTATAAAT
1 TAATACTAAATGTATAAAT
18797231 TAATA
1 TAATA
18797236 TTATTCATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
TAATACTAAATGTATAAAT
Found at i:18797679 original size:14 final size:13
Alignment explanation
Indices: 18797652--18797689 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
18797642 CAAAAAAAAT
18797652 AATATTTTTTAAA
1 AATATTTTTTAAA
18797665 AATATTTTTTGAAA
1 AATATTTTTT-AAA
18797679 AATATTTTTTA
1 AATATTTTTTA
18797690 TTTGCAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (13 bp):
AATATTTTTTAAA
Found at i:18799037 original size:22 final size:22
Alignment explanation
Indices: 18799009--18799051 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
18798999 TTTGGTGTTG
*
18799009 AAAACAAGGTAAA-AATAAGATT
1 AAAACAAGATAAAGAA-AAGATT
18799031 AAAACAAGATAAAGAAAAGAT
1 AAAACAAGATAAAGAAAAGAT
18799052 AAATGAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.67, C:0.05, G:0.14, T:0.14
Consensus pattern (22 bp):
AAAACAAGATAAAGAAAAGATT
Found at i:18803251 original size:30 final size:31
Alignment explanation
Indices: 18803217--18803281 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 31
18803207 TTTTTTGAAA
*
18803217 TTTTGGCTTTTTTGTTTTTTTTTGT-GTTTT
1 TTTTGCCTTTTTTGTTTTTTTTTGTGGTTTT
*
18803247 TTTTGCCTTTTTTGTTTTTTTTTTTGGTTTT
1 TTTTGCCTTTTTTGTTTTTTTTTGTGGTTTT
18803278 TTTT
1 TTTT
18803282 TGTAAACAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 23 0.72
31 9 0.28
ACGTcount: A:0.00, C:0.05, G:0.14, T:0.82
Consensus pattern (31 bp):
TTTTGCCTTTTTTGTTTTTTTTTGTGGTTTT
Found at i:18803637 original size:11 final size:11
Alignment explanation
Indices: 18803613--18803657 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
18803603 TTGGTGCTGG
18803613 AAACAAGATAA
1 AAACAAGATAA
* *
18803624 AAATAAGATTA
1 AAACAAGATAA
18803635 AAACAAGATAA
1 AAACAAGATAA
18803646 AGAA-AAGATAA
1 A-AACAAGATAA
18803657 A
1 A
18803658 TGAATTGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 27 0.93
12 2 0.07
ACGTcount: A:0.71, C:0.04, G:0.11, T:0.13
Consensus pattern (11 bp):
AAACAAGATAA
Found at i:18803641 original size:22 final size:22
Alignment explanation
Indices: 18803613--18803654 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
18803603 TTGGTGCTGG
18803613 AAACAAGATAAA-AATAAGATTA
1 AAACAAGATAAAGAA-AAGATTA
18803635 AAACAAGATAAAGAAAAGAT
1 AAACAAGATAAAGAAAAGAT
18803655 AAATGAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.69, C:0.05, G:0.12, T:0.14
Consensus pattern (22 bp):
AAACAAGATAAAGAAAAGATTA
Found at i:18807739 original size:90 final size:90
Alignment explanation
Indices: 18807586--18807766 Score: 328
Period size: 90 Copynumber: 2.0 Consensus size: 90
18807576 CTTCGCCAAA
*
18807586 CCAAAATTTACAATTCCATCTTTCGGTGGAGAATATGATTCGGACGACTACGTGGATTGGGAAAG
1 CCAAAATTTACAATTACATCTTTCGGTGGAGAATATGATTCGGACGACTACGTGGATTGGGAAAG
*
18807651 GAAAGTTTATATCATGTTCTCATAC
66 GAAAGTTGATATCATGTTCTCATAC
18807676 CCAAAATTTACAATTACATCTTTCGGTGGAGAATATG-TTCCGGACGACTACGTGGATTGGGAAA
1 CCAAAATTTACAATTACATCTTTCGGTGGAGAATATGATT-CGGACGACTACGTGGATTGGGAAA
18807740 GGAAAGTTGATATCATGTTCTCATAC
65 GGAAAGTTGATATCATGTTCTCATAC
18807766 C
1 C
18807767 ATGAATGTCC
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
89 2 0.02
90 86 0.98
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (90 bp):
CCAAAATTTACAATTACATCTTTCGGTGGAGAATATGATTCGGACGACTACGTGGATTGGGAAAG
GAAAGTTGATATCATGTTCTCATAC
Found at i:18813637 original size:104 final size:105
Alignment explanation
Indices: 18813485--18813686 Score: 273
Period size: 104 Copynumber: 1.9 Consensus size: 105
18813475 TGTTAGTGTC
* * * *
18813485 GAACATTTGGTTACTATAAAATGCTTAACGTGACAACATTGGTTGTCACAAAATATACTTTTAGT
1 GAACATTTGGTCACTATAAAATACTTAACGTGACAACATTGATGGTCACAAAATATACTTTTAGT
* *
18813550 GTCAAATAAATTT-ATAATAATTTCTATTGATAATAGTATT
66 GTCAAA-AAATTTCATAACAATTTATATTGATAATAGTATT
** * *
18813590 GAACATTTGGTCACTA-AAAATACTTATTGTGACAATATTGATGGTCACAAAATATATTTTTAGT
1 GAACATTTGGTCACTATAAAATACTTAACGTGACAACATTGATGGTCACAAAATATACTTTTAGT
* *
18813654 GTTAAAAAATTTCATCACAATTTATATTGATAA
66 GTCAAAAAATTTCATAACAATTTATATTGATAA
18813687 CTGTGTCGAT
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
103 6 0.07
104 63 0.75
105 15 0.18
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (105 bp):
GAACATTTGGTCACTATAAAATACTTAACGTGACAACATTGATGGTCACAAAATATACTTTTAGT
GTCAAAAAATTTCATAACAATTTATATTGATAATAGTATT
Found at i:18814962 original size:40 final size:40
Alignment explanation
Indices: 18814898--18814976 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
18814888 CATATTTGTC
* *
18814898 AATGCGAAGCCTTGAACTGGAGGGAAACCAAAAAAAATAT
1 AATGCGAAACCTTGAACTAGAGGGAAACCAAAAAAAATAT
*
18814938 AATGTGAAACCTTGAACTAGAGGGAAACCAAAAAAAATA
1 AATGCGAAACCTTGAACTAGAGGGAAACCAAAAAAAATA
18814977 GTTAAAGGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.15
Consensus pattern (40 bp):
AATGCGAAACCTTGAACTAGAGGGAAACCAAAAAAAATAT
Found at i:18816381 original size:20 final size:19
Alignment explanation
Indices: 18816353--18816402 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
18816343 CATATGAAAT
*
18816353 TGTCTCGAATGACCTATGTA
1 TGTCCCGAA-GACCTATGTA
*
18816373 TGTCCCGAAGAACCTCTGTA
1 TGTCCCGAAG-ACCTATGTA
18816393 TGTCCCGAAG
1 TGTCCCGAAG
18816403 GACCGCATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (19 bp):
TGTCCCGAAGACCTATGTA
Found at i:18817280 original size:2 final size:2
Alignment explanation
Indices: 18817273--18817425 Score: 278
Period size: 2 Copynumber: 78.5 Consensus size: 2
18817263 TCCTATGTTT
18817273 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
18817315 AC AC AC AC AC AC AC AC AC -C AC AC -C AC AC AC AC -C AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
18817354 -C AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
18817395 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
18817426 TATATATATC
Statistics
Matches: 147, Mismatches: 0, Indels: 8
0.95 0.00 0.05
Matches are distributed among these distances:
1 4 0.03
2 143 0.97
ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:18817430 original size:2 final size:2
Alignment explanation
Indices: 18817425--18817468 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
18817415 ACACACACAC
*
18817425 AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18817467 AT
1 AT
18817469 CAAATAATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18821112 original size:257 final size:257
Alignment explanation
Indices: 18820649--18821160 Score: 871
Period size: 257 Copynumber: 2.0 Consensus size: 257
18820639 AAAACACTTG
* *
18820649 TCTTTATAAATGGGTAAAATTTGCAATTTAAGAAAGTATTCACTTACATTAATTAAAATCAATTG
1 TCTTTACAAATGGGTAAAATTTGCAATTGAAGAAAGTATTCACTTACATTAATTAAAATCAATTG
* *
18820714 GTTTACAAAACCTATCCGAGCATCTTTAATTCAAATCTATTAATAAATGCCAACTAAATTTACTA
66 GTTTACAAAACCTATCAGAGCATCTTCAATTCAAATCTATTAATAAATGCCAACTAAATTTACTA
* * *
18820779 TAACAAAATATATATCATTTAAACACATTTCTGATCTGAACTGTGGAAATGAGAATCTGACATGT
131 TAACAAAATACATATCATTTAAACACATTTCTGATCTGAACTGTGGAAAGGAGAATCTAACATGT
* *
18820844 CCTGCTCCTCTTAGCTTCTATTCTCGTTTCTAGAACCTACGTGTGAAACACTCACACGCTTT
196 CCTGCTCCTCTTAGATTCTATTCTCGCTTCTAGAACCTACGTGTGAAACACTCACACGCTTT
* *
18820906 TCTTTACAAATGGGTAAGATTTGCAATTGAAGAAAGTATTCACTTACATTGATTAAAATCAATTG
1 TCTTTACAAATGGGTAAAATTTGCAATTGAAGAAAGTATTCACTTACATTAATTAAAATCAATTG
* *
18820971 GTTTACAAAACCTATCAGAGCATCTTCAATTCAAATCTATTAATACATGTCAACTAAATTTACTA
66 GTTTACAAAACCTATCAGAGCATCTTCAATTCAAATCTATTAATAAATGCCAACTAAATTTACTA
* *
18821036 TAACAAAATACATATGATTTAAACACATTTCTGATCTGAACTGTGGAAAGGTGAATCTAACATGT
131 TAACAAAATACATATCATTTAAACACATTTCTGATCTGAACTGTGGAAAGGAGAATCTAACATGT
* *
18821101 CCTGCTCCTCTTAGATTCTCTTTTCGCTTCTAGAACCTACGTGTGAAACACTCACACGCT
196 CCTGCTCCTCTTAGATTCTATTCTCGCTTCTAGAACCTACGTGTGAAACACTCACACGCT
18821161 AAGTCGATGA
Statistics
Matches: 238, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
257 238 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (257 bp):
TCTTTACAAATGGGTAAAATTTGCAATTGAAGAAAGTATTCACTTACATTAATTAAAATCAATTG
GTTTACAAAACCTATCAGAGCATCTTCAATTCAAATCTATTAATAAATGCCAACTAAATTTACTA
TAACAAAATACATATCATTTAAACACATTTCTGATCTGAACTGTGGAAAGGAGAATCTAACATGT
CCTGCTCCTCTTAGATTCTATTCTCGCTTCTAGAACCTACGTGTGAAACACTCACACGCTTT
Found at i:18821634 original size:20 final size:20
Alignment explanation
Indices: 18821609--18821662 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
18821599 CATATGAAAT
18821609 TGTCCCGAAAGACCTATGTA
1 TGTCCCGAAAGACCTATGTA
*
18821629 TGTCCCG-AAGAACCTCTGTA
1 TGTCCCGAAAG-ACCTATGTA
*
18821649 TGTCCCGAACGACC
1 TGTCCCGAAAGACC
18821663 GCGTAGACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 25 0.83
21 2 0.07
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.22
Consensus pattern (20 bp):
TGTCCCGAAAGACCTATGTA
Found at i:18822534 original size:2 final size:2
Alignment explanation
Indices: 18822527--18822554 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
18822517 CTATGGTTAC
18822527 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18822555 GTGTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18822559 original size:2 final size:2
Alignment explanation
Indices: 18822554--18822590 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
18822544 TATATATATA
18822554 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
18822591 ATATATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:18826582 original size:20 final size:20
Alignment explanation
Indices: 18826557--18826610 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
18826547 CATATGAAAT
*
18826557 TGTCCCAAAGGACCTATGTA
1 TGTCCCGAAGGACCTATGTA
* *
18826577 TGTCCCGAAGAACCTCTGTA
1 TGTCCCGAAGGACCTATGTA
18826597 TGTCCCGAAGGACC
1 TGTCCCGAAGGACC
18826611 GCGTAGACCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (20 bp):
TGTCCCGAAGGACCTATGTA
Found at i:18827608 original size:203 final size:207
Alignment explanation
Indices: 18827252--18827664 Score: 771
Period size: 203 Copynumber: 2.0 Consensus size: 207
18827242 CTTGTACTTG
18827252 GTTATCCTATGGTTACATATATATATATATATATCAAATAATTCTTTAGTTGGTAGCTTATGTCA
1 GTTATCCTATGGTTAC--A-ATATATATATATATCAAATAATTCTTTAGTTGGTAGCTTATGTCA
18827317 CCTATTCATCTCATTCATTATATCAATATCATATAACTTATGTAAACATATATATCACTTATACC
63 CCTATTCATCTCATTCATTATATCAATATCATATAACTTATGTAAACATATATATCACTTATACC
18827382 GGTTCATATGTCTTATCACACTAGCATATATTCATGCAATCATGTCACACACATATAATAATATA
128 GGTTCATATGTCTTATCACACTAGCATATATTCATGCAATCATGTCACACACATATAATAATATA
18827447 TAACTGAGACACTCA
193 TAACTGAGACACTCA
18827462 GTTATCCTATGGTTAC-ATATATATATATATCAAATAATTCTTTAGTTGGTAGCTTATGTCACCT
1 GTTATCCTATGGTTACAATATATATATATATCAAATAATTCTTTAGTTGGTAGCTTATGTCACCT
18827526 ATTCATCTCA-TCATTATATC-ATAT-ATATAACTTATGTAAACATATATATCACTTATACCGGT
66 ATTCATCTCATTCATTATATCAATATCATATAACTTATGTAAACATATATATCACTTATACCGGT
18827588 TCATATGTCTTATCACACTAGCATATATTCATGCAATCATGTCACACACATATAATAATATATAA
131 TCATATGTCTTATCACACTAGCATATATTCATGCAATCATGTCACACACATATAATAATATATAA
18827653 CTGAGACACTCA
196 CTGAGACACTCA
18827665 TAACAAACAC
Statistics
Matches: 203, Mismatches: 0, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
203 115 0.57
204 4 0.02
205 10 0.05
206 58 0.29
210 16 0.08
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (207 bp):
GTTATCCTATGGTTACAATATATATATATATCAAATAATTCTTTAGTTGGTAGCTTATGTCACCT
ATTCATCTCATTCATTATATCAATATCATATAACTTATGTAAACATATATATCACTTATACCGGT
TCATATGTCTTATCACACTAGCATATATTCATGCAATCATGTCACACACATATAATAATATATAA
CTGAGACACTCA
Found at i:18828035 original size:19 final size:19
Alignment explanation
Indices: 18828011--18828085 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
18828001 CCTTCACTGG
18828011 TGTATCGGTACACTACCTA
1 TGTATCGGTACACTACCTA
* *
18828030 TGTATCGGTACATCTCTTCACTGG
1 TGTATCGGTACA---CTAC-CT-A
**
18828054 TGTATTAGTACACTACCTA
1 TGTATCGGTACACTACCTA
18828073 TGTATCGGTACAC
1 TGTATCGGTACAC
18828086 AAATTACATT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
19 23 0.53
20 2 0.05
21 3 0.07
22 3 0.07
23 2 0.05
24 10 0.23
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (19 bp):
TGTATCGGTACACTACCTA
Found at i:18828049 original size:43 final size:43
Alignment explanation
Indices: 18827995--18828084 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
18827985 AGGGTATCTA
*
18827995 TACATCCCTTCACTGGTGTATCGGTACACTACCTATGTATCGG
1 TACATCCCTTCACTGGTGTATCAGTACACTACCTATGTATCGG
* *
18828038 TACATCTCTTCACTGGTGTATTAGTACACTACCTATGTATCGG
1 TACATCCCTTCACTGGTGTATCAGTACACTACCTATGTATCGG
18828081 TACA
1 TACA
18828085 CAAATTACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (43 bp):
TACATCCCTTCACTGGTGTATCAGTACACTACCTATGTATCGG
Found at i:18831104 original size:21 final size:21
Alignment explanation
Indices: 18831080--18831133 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
18831070 CAATGAACCC
18831080 TAAACCTTAAATCTTAAATCA
1 TAAACCTTAAATCTTAAATCA
* *
18831101 TAAACTTTAAATCTTAAATTA
1 TAAACCTTAAATCTTAAATCA
*
18831122 TAAACCCTAAAT
1 TAAACCTTAAAT
18831134 TGTACTTACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAACCTTAAATCTTAAATCA
Found at i:18831217 original size:14 final size:14
Alignment explanation
Indices: 18831184--18831223 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
18831174 TATTTTTGCA
18831184 ATAAACCCTAAACC
1 ATAAACCCTAAACC
* * *
18831198 ACAAACCATAAACT
1 ATAAACCCTAAACC
18831212 ATAAACCCTAAA
1 ATAAACCCTAAA
18831224 ACCTAAATCC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15
Consensus pattern (14 bp):
ATAAACCCTAAACC
Found at i:18841520 original size:18 final size:18
Alignment explanation
Indices: 18841491--18841556 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
18841481 AATTTGTGTT
*
18841491 TGATAACTGTAAAATATC
1 TGATATCTGTAAAATATC
*
18841509 TAATATCTGT-AAATATC
1 TGATATCTGTAAAATATC
18841526 TGATAAT-TG-AAAATCATC
1 TGAT-ATCTGTAAAAT-ATC
*
18841544 TGATAACTGTAAA
1 TGATATCTGTAAA
18841557 CATTTATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 17 0.44
18 19 0.49
19 3 0.08
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (18 bp):
TGATATCTGTAAAATATC
Found at i:18841539 original size:17 final size:17
Alignment explanation
Indices: 18841491--18841549 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
18841481 AATTTGTGTT
*
18841491 TGATAACTGTAAAATATC
1 TGATAATTG-AAAATATC
* *
18841509 TAAT-ATCTGTAAATATC
1 TGATAAT-TGAAAATATC
18841526 TGATAATTGAAAATCATC
1 TGATAATTGAAAAT-ATC
18841544 TGATAA
1 TGATAA
18841550 CTGTAAACAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 17 0.52
18 16 0.48
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (17 bp):
TGATAATTGAAAATATC
Found at i:18854850 original size:11 final size:11
Alignment explanation
Indices: 18854834--18854964 Score: 54
Period size: 11 Copynumber: 12.6 Consensus size: 11
18854824 AAAACAGAAG
18854834 AATAAAATAAT
1 AATAAAATAAT
18854845 AATAAAAT-A-
1 AATAAAATAAT
*
18854854 AATTAAA-AAT
1 AATAAAATAAT
18854864 AA-AAAATAAT
1 AATAAAATAAT
* *
18854874 AAGAAAATTAGT
1 AATAAAA-TAAT
*
18854886 -TTAAAA-AA-
1 AATAAAATAAT
*
18854894 AATAAAAATAAA
1 AAT-AAAATAAT
*
18854906 AAGAAAATAA-
1 AATAAAATAAT
18854916 AA-AAAATAACAT
1 AATAAAAT-A-AT
*
18854928 AA-AATATATAT
1 AATAAAATA-AT
18854939 AATAAAA-AA-
1 AATAAAATAAT
*
18854948 AATAAAAAAAT
1 AATAAAATAAT
18854959 AA-AAAA
1 AATAAAA
18854965 AAGAAATAAT
Statistics
Matches: 94, Mismatches: 11, Indels: 31
0.69 0.08 0.23
Matches are distributed among these distances:
9 24 0.26
10 22 0.23
11 34 0.36
12 14 0.15
ACGTcount: A:0.76, C:0.01, G:0.02, T:0.21
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:18854871 original size:26 final size:25
Alignment explanation
Indices: 18854834--18854978 Score: 95
Period size: 26 Copynumber: 5.6 Consensus size: 25
18854824 AAAACAGAAG
18854834 AATAAAATAATAATAAAATAAATTAAA
1 AATAAAA-AA-AATAAAATAAATTAAA
* *
18854861 AATAAAAAATAATAAGA-AAATT-AG
1 AATAAAAAA-AATAAAATAAATTAAA
** *
18854885 TTTAAAAAAAATAAAAATAAA-AAGAA
1 AATAAAAAAAAT-AAAATAAATTA-AA
* *
18854911 AATAAAAAAAATAACATAAAATATATAT
1 AATAAAAAAAATAAAAT-AAAT-TA-AA
18854939 AATAAAAAAAATAAAA-AAA-TAAA
1 AATAAAAAAAATAAAATAAATTAAA
18854962 AA-AAAGAAATAATAAAA
1 AATAAA-AAA-AATAAAA
18854979 ATTAGAATAA
Statistics
Matches: 94, Mismatches: 15, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
22 3 0.03
23 9 0.10
24 20 0.21
25 12 0.13
26 26 0.28
27 7 0.07
28 17 0.18
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.20
Consensus pattern (25 bp):
AATAAAAAAAATAAAATAAATTAAA
Found at i:18854880 original size:29 final size:29
Alignment explanation
Indices: 18854837--18854924 Score: 90
Period size: 32 Copynumber: 3.0 Consensus size: 29
18854827 ACAGAAGAAT
*
18854837 AAAATAATAATAAAATAAATTAAAAATAA
1 AAAATAATAAGAAAATAAATTAAAAATAA
** *
18854866 AAAATAATAAGAAAATTAGTTTAAAAAAAATA
1 AAAATAATAAGAAAA-TAAATT-AAAAATA-A
*
18854898 AAAATAAAAAGAAAATAAA--AAAAATAA
1 AAAATAATAAGAAAATAAATTAAAAATAA
18854925 CATAAAATAT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
27 1 0.02
28 6 0.12
29 14 0.29
30 4 0.08
31 8 0.17
32 15 0.31
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.20
Consensus pattern (29 bp):
AAAATAATAAGAAAATAAATTAAAAATAA
Found at i:18854881 original size:40 final size:37
Alignment explanation
Indices: 18854837--18854973 Score: 104
Period size: 40 Copynumber: 3.6 Consensus size: 37
18854827 ACAGAAGAAT
18854837 AAAATAATAATAAAATAAATTAAAAATAAAAAATAATAA
1 AAAATAATAATAAAATAAA-TAAAAATAAAAAA-AATAA
* * *
18854876 GAAAATTAGT-TTAAAAAAAATAAAAATAAAAAGAAAATAA
1 -AAAA-TAATAATAAAATAAATAAAAAT-AAAA-AAAATAA
* *
18854916 AAAA-AATAACATAAAATATAT-ATAATAAAAAAAATAAA
1 AAAATAAT-A-ATAAAATAAATAAAAATAAAAAAAAT-AA
*
18854954 AAAATAA-AA-AAAAGAAATAA
1 AAAATAATAATAAAATAAATAA
18854974 TAAAAATTAG
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
35 7 0.09
36 2 0.03
37 8 0.10
38 10 0.13
39 17 0.22
40 29 0.37
41 5 0.06
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.20
Consensus pattern (37 bp):
AAAATAATAATAAAATAAATAAAAATAAAAAAAATAA
Found at i:18854901 original size:9 final size:9
Alignment explanation
Indices: 18854887--18854966 Score: 83
Period size: 9 Copynumber: 9.0 Consensus size: 9
18854877 AAAATTAGTT
18854887 TAAAAAAAA
1 TAAAAAAAA
*
18854896 TAAAAATAA
1 TAAAAAAAA
*
18854905 -AAAGAAAA
1 TAAAAAAAA
18854913 TAAAAAAAA
1 TAAAAAAAA
*
18854922 TAACATAAAA
1 TAA-AAAAAA
* * *
18854932 TATATATAA
1 TAAAAAAAA
18854941 TAAAAAAAA
1 TAAAAAAAA
18854950 T-AAAAAAA
1 TAAAAAAAA
18854958 TAAAAAAAA
1 TAAAAAAAA
18854967 GAAATAATAA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
8 14 0.24
9 37 0.64
10 7 0.12
ACGTcount: A:0.81, C:0.01, G:0.01, T:0.16
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:18854906 original size:14 final size:14
Alignment explanation
Indices: 18854889--18854980 Score: 62
Period size: 14 Copynumber: 6.0 Consensus size: 14
18854879 AATTAGTTTA
18854889 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
18854903 AAAAAGAAAATAAAAA-
1 --AAA-AAAATAAAAAT
*
18854919 AAATAACATAAAATAT
1 AAA-AAAATAAAA-AT
18854935 ATATAATAAA-AAAAAT
1 A-A-AA-AAATAAAAAT
*
18854951 AAAAAAATAAAAAA
1 AAAAAAATAAAAAT
18854965 AAGAAATAATAAAAAT
1 AA-AAA-AATAAAAAT
18854981 TAGAATAATC
Statistics
Matches: 62, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
13 3 0.05
14 20 0.32
15 5 0.08
16 15 0.24
17 16 0.26
18 3 0.05
ACGTcount: A:0.80, C:0.01, G:0.02, T:0.16
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:18854985 original size:16 final size:16
Alignment explanation
Indices: 18854939--18854989 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
18854929 AAATATATAT
18854939 AATAA-AAAAAATA-A
1 AATAATAAAAAATAGA
* *
18854953 AAAAATAAAAAAAAGA
1 AATAATAAAAAATAGA
*
18854969 AATAATAAAAATTAG-
1 AATAATAAAAAATAGA
18854984 AATAAT
1 AATAAT
18854990 CAGTAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
14 4 0.13
15 13 0.43
16 13 0.43
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (16 bp):
AATAATAAAAAATAGA
Found at i:18854988 original size:45 final size:46
Alignment explanation
Indices: 18854832--18854988 Score: 104
Period size: 48 Copynumber: 3.2 Consensus size: 46
18854822 AAAAAACAGA
*
18854832 AGAATAAAATAATAATAAAATAAATTAAAAATAAAAAATAATAAGAAAATT
1 AGAATAAAA-AAAAATAAAA-AAA-TAAAAA-AAAAAATAAT-AGAAAATT
* * * *
18854883 AGTTTAAAAAAAATAAAAATAAAAAGAA-AATAAAAAAAATAACATAAAATAT
1 AG----AATAAAA-AAAAATAAAAA-AATAAAAAAAAAAATAATAGAAAAT-T
*
18854935 A-TATAATAAAAAAAATAAAAAAATAAAAAAAAGAAATAATA-AAAATT
1 AGAATAA-AAA-AAAATAAAAAAATAAAAAAAA-AAATAATAGAAAATT
18854982 AGAATAA
1 AGAATAA
18854989 TCAGTAAAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 25
0.71 0.08 0.21
Matches are distributed among these distances:
47 8 0.09
48 28 0.33
49 7 0.08
51 8 0.09
52 11 0.13
53 4 0.05
54 1 0.01
55 18 0.21
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.20
Consensus pattern (46 bp):
AGAATAAAAAAAAATAAAAAAATAAAAAAAAAAATAATAGAAAATT
Found at i:18855079 original size:16 final size:15
Alignment explanation
Indices: 18855060--18855100 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
18855050 TATATAACAC
*
18855060 AAAAATAATATTAATT
1 AAAAATAA-ATTAAAT
18855076 AAAAATAAATTAAAT
1 AAAAATAAATTAAAT
*
18855091 AAAATTAAAT
1 AAAAATAAAT
18855101 AAGAACAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAAAATAAATTAAAT
Found at i:18855114 original size:25 final size:25
Alignment explanation
Indices: 18855062--18855114 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
18855052 TATAACACAA
* * * *
18855062 AAATAATATTAATTAAAAATAAATT
1 AAATAAAATTAAATAAAAACAAAGT
*
18855087 AAATAAAATTAAATAAGAACAAAGT
1 AAATAAAATTAAATAAAAACAAAGT
18855112 AAA
1 AAA
18855115 ACATACAGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (25 bp):
AAATAAAATTAAATAAAAACAAAGT
Found at i:18857264 original size:164 final size:165
Alignment explanation
Indices: 18856865--18857651 Score: 1132
Period size: 164 Copynumber: 4.8 Consensus size: 165
18856855 TGAGCTATAT
* *
18856865 TGTAAATGATAT-CACCTCGAAGTTGAGTGTAATCGAAC-TCGGGAGTCTTTGGCAGATAGCCCT
1 TGTAAATGATATGC-CCTCGAAGCTGAGTGTAATCGAACTTAGGG-GTCTTTGGCAGATAGCCCT
* *
18856928 TCTTGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
64 TCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
* ** *
18856993 TTGATTGGCAGATAACCCTTCTTGACTTAAGTTATGC
129 TTGACTAACAGATAACCCTTCTAGACTTAAGTTATGC
* ** * ** *
18857030 TGCAAATGATGCGCCCTCGAAGCTGAGCGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCATC
1 TGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTTAGGGGTCTTTGGCAGATAGCCCTTC
* *
18857095 TCGACTTAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTT
66 TCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
* *
18857160 G-CTAACAGATAACCCTTCTAGCCTTGAGTTATGC
131 GACTAACAGATAACCCTTCTAGACTTAAGTTATGC
* * * * *
18857194 TGTAAATGTTATGCCCTTGAAGTTGAGTGTAATCGAACTTAAGGGTCTTTGGCAGATAGCTCTTC
1 TGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTTAGGGGTCTTTGGCAGATAGCCCTTC
* *
18857259 TCGACTTAAGCTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
66 TCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
* ** *
18857324 GATTGGCAGATAACCCTTCTTGACTTAAGTTATGC
131 GACTAACAGATAACCCTTCTAGACTTAAGTTATGC
* * * **
18857359 TGCAAATGATACGCCCTCGAAGCTGAGCGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTC
1 TGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTTAGGGGTCTTTGGCAGATAGCCCTTC
* *
18857424 TCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTT
66 TCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
* * *
18857489 -TCTAACAGATAACCCTTCTAGCCTTGAGTTATGC
131 GACTAACAGATAACCCTTCTAGACTTAAGTTATGC
* * *
18857523 TGTAAATGTTATGCCCTTGAAGCTGAGTGTAATCGAACTTAAGGGTCTTTGGCAGATAGCCCTTC
1 TGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTTAGGGGTCTTTGGCAGATAGCCCTTC
*
18857588 TCGACTTAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
66 TCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
18857652 GGTGGCAGGT
Statistics
Matches: 548, Mismatches: 71, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
164 288 0.53
165 256 0.47
166 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (165 bp):
TGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTTAGGGGTCTTTGGCAGATAGCCCTTC
TCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
GACTAACAGATAACCCTTCTAGACTTAAGTTATGC
Found at i:18857445 original size:329 final size:329
Alignment explanation
Indices: 18856865--18857651 Score: 1416
Period size: 329 Copynumber: 2.4 Consensus size: 329
18856855 TGAGCTATAT
* * **
18856865 TGTAAATGATAT-CACCTCGAAGTTGAGTGTAATCGAAC-TCGGGAGTCTTTGGCAGATAGCCCT
1 TGTAAATGTTATGC-CCTTGAAGTTGAGTGTAATCGAACTTAAGG-GTCTTTGGCAGATAGCCCT
*
18856928 TCTTGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
64 TCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
*
18856993 TTGATTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATGCGCCCTCGAAGCTGAGC
129 TTGATTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATACGCCCTCGAAGCTGAGC
*
18857058 GTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCATCTCGACTTAAGCTATTCTGCAAATGATGT
194 GTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCATCTCGACTTAAGCTATACTGCAAATGATGT
18857123 GCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAG
259 GCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAG
18857188 TTATGC
324 TTATGC
*
18857194 TGTAAATGTTATGCCCTTGAAGTTGAGTGTAATCGAACTTAAGGGTCTTTGGCAGATAGCTCTTC
1 TGTAAATGTTATGCCCTTGAAGTTGAGTGTAATCGAACTTAAGGGTCTTTGGCAGATAGCCCTTC
*
18857259 TCGACTTAAGCTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
66 TCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
18857324 GATTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATACGCCCTCGAAGCTGAGCGT
131 GATTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATACGCCCTCGAAGCTGAGCGT
*
18857389 AATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGC
196 AATCGAACTCGGGGGTCTTTGGCAGATAGCCCATCTCGACTTAAGCTATACTGCAAATGATGTGC
*
18857454 CTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTCTAACAGATAACCCTTCTAGCCTTGAGTT
261 CTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGTT
18857519 ATGC
326 ATGC
*
18857523 TGTAAATGTTATGCCCTTGAAGCTGAGTGTAATCGAACTTAAGGGTCTTTGGCAGATAGCCCTTC
1 TGTAAATGTTATGCCCTTGAAGTTGAGTGTAATCGAACTTAAGGGTCTTTGGCAGATAGCCCTTC
* *
18857588 TCGACTTAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
66 TCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
18857652 GGTGGCAGGT
Statistics
Matches: 440, Mismatches: 16, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
329 436 0.99
330 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (329 bp):
TGTAAATGTTATGCCCTTGAAGTTGAGTGTAATCGAACTTAAGGGTCTTTGGCAGATAGCCCTTC
TCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT
GATTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATACGCCCTCGAAGCTGAGCGT
AATCGAACTCGGGGGTCTTTGGCAGATAGCCCATCTCGACTTAAGCTATACTGCAAATGATGTGC
CTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGTT
ATGC
Found at i:18862847 original size:10 final size:9
Alignment explanation
Indices: 18862832--18862969 Score: 67
Period size: 9 Copynumber: 15.0 Consensus size: 9
18862822 AAAACAGAAG
18862832 AATAAATAAT
1 AATAAA-AAT
18862842 AAT-AAAAT
1 AATAAAAAT
18862850 AATTAAAAAT
1 AA-TAAAAAT
*
18862860 AAAAAATAAT
1 AATAAA-AAT
* *
18862870 AAGAAAATT
1 AATAAAAAT
*
18862879 AGTTTAAAAA-
1 A--ATAAAAAT
18862889 AAT-AAAAT
1 AATAAAAAT
18862897 AA-AAAGAA-
1 AATAAA-AAT
18862905 AATAAAAAAT
1 AAT-AAAAAT
18862915 AACATAAAATAT
1 -A-ATAAAA-AT
*
18862927 ATATAAAAAA
1 A-ATAAAAAT
18862937 AATAAAAA-
1 AATAAAAAT
18862945 AATAAAAA-
1 AATAAAAAT
*
18862953 AA-AGAAAT
1 AATAAAAAT
18862961 AATAAAAAT
1 AATAAAAAT
18862970 TAGAATAATC
Statistics
Matches: 101, Mismatches: 11, Indels: 33
0.70 0.08 0.23
Matches are distributed among these distances:
7 8 0.08
8 24 0.24
9 25 0.25
10 24 0.24
11 16 0.16
12 4 0.04
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (9 bp):
AATAAAAAT
Found at i:18862860 original size:25 final size:25
Alignment explanation
Indices: 18862832--18862916 Score: 73
Period size: 25 Copynumber: 3.2 Consensus size: 25
18862822 AAAACAGAAG
*
18862832 AATAAATAATAATAA-AATAATTAAA
1 AATAAAAAATAATAAGAA-AATTAAA
18862857 AATAAAAAATAATAAGAAAATTAGTTTAA
1 AATAAAAAATAATAAGAAAATTA----AA
* * *
18862886 AAAAATAAAATAAAAAGAAAATAAAA
1 AATAA-AAAATAATAAGAAAATTAAA
18862912 AATAA
1 AATAA
18862917 CATAAAATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
25 19 0.39
26 8 0.16
29 6 0.12
30 16 0.33
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (25 bp):
AATAAAAAATAATAAGAAAATTAAA
Found at i:18862888 original size:30 final size:29
Alignment explanation
Indices: 18862835--18862959 Score: 90
Period size: 28 Copynumber: 4.4 Consensus size: 29
18862825 ACAGAAGAAT
*
18862835 AAATAATAATAAAA-TAATTAAAAATAA-A
1 AAATAATAAGAAAATTAATTAAAAA-AATA
*
18862863 AAATAATAAGAAAATTAGTTTAAAAAAATA
1 AAATAATAAGAAAATTA-ATTAAAAAAATA
*
18862893 AAATAAAAAGAAAA-TAA--AAAATAACATA
1 AAATAATAAGAAAATTAATTAAAA-AA-ATA
*
18862921 AAATATATATA-AAAA--AAATAAAAAAATA
1 AAATA-ATA-AGAAAATTAATTAAAAAAATA
18862949 AAA-AA-AAGAAA
1 AAATAATAAGAAA
18862960 TAATAAAAAT
Statistics
Matches: 82, Mismatches: 5, Indels: 23
0.75 0.05 0.21
Matches are distributed among these distances:
24 1 0.01
25 4 0.05
26 5 0.06
27 3 0.04
28 29 0.35
29 14 0.17
30 26 0.32
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.20
Consensus pattern (29 bp):
AAATAATAAGAAAATTAATTAAAAAAATA
Found at i:18862894 original size:47 final size:46
Alignment explanation
Indices: 18862833--18862977 Score: 145
Period size: 48 Copynumber: 3.1 Consensus size: 46
18862823 AAACAGAAGA
* *
18862833 ATAAATAATAATAAAATAATTAAAAATAAAAAATAATAAGAAAATTAGT
1 ATAAA-AAAAATAAAATAAATAAAAATAAAAAATAAT-A-AAAATTAGT
* * *
18862882 -TTAAAAAAATAAAATAAAAAGAAAATAAAAAATAACATAAAATATA-T
1 ATAAAAAAAATAAAATAAATA-AAAATAAAAAATAATA-AAAAT-TAGT
*
18862929 ATAAAAAAAATAAAA-AAATAAAAA-AAAGAAATAATAAAAATTAGA
1 ATAAAAAAAATAAAATAAATAAAAATAAA-AAATAATAAAAATTAGT
18862974 ATAA
1 ATAA
18862978 TCAGTAAAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
44 2 0.02
45 12 0.15
46 11 0.14
47 24 0.30
48 32 0.40
ACGTcount: A:0.74, C:0.01, G:0.03, T:0.21
Consensus pattern (46 bp):
ATAAAAAAAATAAAATAAATAAAAATAAAAAATAATAAAAATTAGT
Found at i:18862900 original size:12 final size:12
Alignment explanation
Indices: 18862885--18862962 Score: 65
Period size: 11 Copynumber: 6.8 Consensus size: 12
18862875 AATTAGTTTA
18862885 AAAAAATAAAAT
1 AAAAAATAAAAT
*
18862897 -AAAAAGAAAAT
1 AAAAAATAAAAT
*
18862908 AAAAAATAACAT
1 AAAAAATAAAAT
* *
18862920 AAAATAT-ATAT
1 AAAAAATAAAAT
*
18862931 AAAAAA-AATA-
1 AAAAAATAAAAT
*
18862941 AAAAAATAAAAA
1 AAAAAATAAAAT
18862953 AAAGAAATAA
1 AAA-AAATAA
18862963 TAAAAATTAG
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
10 6 0.11
11 24 0.44
12 18 0.33
13 6 0.11
ACGTcount: A:0.81, C:0.01, G:0.03, T:0.15
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:18862915 original size:23 final size:22
Alignment explanation
Indices: 18862884--18862967 Score: 71
Period size: 23 Copynumber: 3.5 Consensus size: 22
18862874 AAATTAGTTT
18862884 AAAAAAATAAAATAAAAAGAAAA
1 AAAAAAATAAAATAAAAA-AAAA
* * *
18862907 TAAAAAATAACATAAAATATATATA
1 AAAAAAATAAAATAAAA-A-A-AAA
18862932 AAAAAAATAAAA-AAATAAAAAA
1 AAAAAAATAAAATAAA-AAAAAA
18862954 AAGAAATAATAAAA
1 AA-AAA-AATAAAA
18862968 ATTAGAATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
22 4 0.08
23 19 0.39
24 13 0.27
25 13 0.27
ACGTcount: A:0.81, C:0.01, G:0.02, T:0.15
Consensus pattern (22 bp):
AAAAAAATAAAATAAAAAAAAA
Found at i:18862936 original size:48 final size:48
Alignment explanation
Indices: 18862833--18863014 Score: 129
Period size: 48 Copynumber: 3.7 Consensus size: 48
18862823 AAACAGAAGA
* ** *
18862833 ATAAATAATAATAAAATAATTA-AAAATAAAAAATAATAAGAAAAT-TAGT
1 ATAAA-AAAAATAAAATAAAAAGAAAATAAAAAATAA-AATAAAATATA-T
* *
18862882 -TTAAAAAAATAAAATAAAAAGAAAATAAAAAATAACATAAAATATAT
1 ATAAAAAAAATAAAATAAAAAGAAAATAAAAAATAAAATAAAATATAT
* * * * *
18862929 ATAAAAAAAATAAAAAAATAAAAAAAAGAAATAATAAAAATTAGAATA-AT
1 ATAAAAAAAATAAAATAA-AAAGAAAATAAAAAAT-AAAA-TAAAATATAT
* *
18862979 CAGTAAAAAAAGAAAGAAATTAAAAGAAAATAAAAA
1 -A-TAAAAAAA-ATA-AAATAAAAAGAAAATAAAAA
18863015 GGTCTAAAAG
Statistics
Matches: 104, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
47 20 0.19
48 34 0.33
49 13 0.12
50 5 0.05
51 7 0.07
52 8 0.08
53 13 0.12
54 4 0.04
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.20
Consensus pattern (48 bp):
ATAAAAAAAATAAAATAAAAAGAAAATAAAAAATAAAATAAAATATAT
Found at i:18862967 original size:13 final size:12
Alignment explanation
Indices: 18862883--18862968 Score: 59
Period size: 12 Copynumber: 6.8 Consensus size: 12
18862873 AAAATTAGTT
18862883 TAAAAAAATAAAA
1 TAAAAAAA-AAAA
*
18862896 T-AAAAAGAAAA
1 TAAAAAAAAAAA
* *
18862907 TAAAAAATAACA
1 TAAAAAAAAAAA
18862919 TAAAATATATATAAAA
1 TAAAA-A-A-A-AAAA
18862935 -AAAATAAAAAAA
1 TAAAA-AAAAAAA
18862947 TAAAAAAAAGAAA
1 TAAAAAAAA-AAA
*
18862960 TAATAAAAA
1 TAAAAAAAA
18862969 TTAGAATAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
11 5 0.08
12 26 0.43
13 18 0.30
14 2 0.03
15 6 0.10
16 3 0.05
ACGTcount: A:0.80, C:0.01, G:0.02, T:0.16
Consensus pattern (12 bp):
TAAAAAAAAAAA
Found at i:18863067 original size:16 final size:15
Alignment explanation
Indices: 18863046--18863085 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
18863036 TATATAACAC
*
18863046 AAAATAATATTAATTA
1 AAAATAA-ATTAAATA
18863062 AAAATAAATTAAATA
1 AAAATAAATTAAATA
*
18863077 AAATTAAAT
1 AAAATAAAT
18863086 AAGAACAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATAAATTAAATA
Found at i:18863099 original size:25 final size:25
Alignment explanation
Indices: 18863047--18863099 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
18863037 ATATAACACA
* * * *
18863047 AAATAATATTAATTAAAAATAAATT
1 AAATAAAATTAAATAAAAACAAAGT
*
18863072 AAATAAAATTAAATAAGAACAAAGT
1 AAATAAAATTAAATAAAAACAAAGT
18863097 AAA
1 AAA
18863100 CATACAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (25 bp):
AAATAAAATTAAATAAAAACAAAGT
Found at i:18867968 original size:40 final size:40
Alignment explanation
Indices: 18867912--18868073 Score: 270
Period size: 40 Copynumber: 4.0 Consensus size: 40
18867902 TGCAGGTTTA
*
18867912 TAATACACTTCAGTATATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTATATATGGTGGGCACGACCTTATGTG
*
18867952 TAATACACTTTGGTATATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTATATATGGTGGGCACGACCTTATGTG
* *
18867992 TAATACACTTCGGTGTATATGGTGGGCACAACCTTATGTG
1 TAATACACTTCGGTATATATGGTGGGCACGACCTTATGTG
* *
18868032 TAATACACTTCGGTGTATATGGTGGGCACGACCTTTTGTG
1 TAATACACTTCGGTATATATGGTGGGCACGACCTTATGTG
18868072 TA
1 TA
18868074 GCACTTTGGT
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 115 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (40 bp):
TAATACACTTCGGTATATATGGTGGGCACGACCTTATGTG
Found at i:18875293 original size:66 final size:64
Alignment explanation
Indices: 18875220--18875399 Score: 225
Period size: 66 Copynumber: 2.7 Consensus size: 64
18875210 CAAGAGAAGT
* * *
18875220 TGTCTCAAGAGAAACAAAATTCGTTTCAAGGGAAATGATCTCAAAGATGGGTGTTTCATGAGAAA
1 TGTCTCAAGAGAGACAAAATT-GTTTCAAGGGAAA-AATCTCAAAGATGGGTGTTTCATAAGAAA
18875285 C
64 C
* * * *
18875286 TGTCTCAAGGGAGACAAAACTTATTTCAAGGGAAACAATCTCAAAGGTTGGTGTTTCATAAGAAA
1 TGTCTCAAGAGAGACAAAA-TTGTTTCAAGGGAAA-AATCTCAAAGATGGGTGTTTCATAAGAAA
18875351 C
64 C
* *
18875352 TGTCTCAAGAGTGACAAAATTTGTTTCAAGGGAAACATACTCAAAGAT
1 TGTCTCAAGAGAGACAAAA-TTGTTTCAAGGGAAAAAT-CTCAAAGAT
18875400 TTGTTTTGTT
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
65 2 0.02
66 94 0.96
67 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26
Consensus pattern (64 bp):
TGTCTCAAGAGAGACAAAATTGTTTCAAGGGAAAAATCTCAAAGATGGGTGTTTCATAAGAAAC
Found at i:18875649 original size:32 final size:32
Alignment explanation
Indices: 18875603--18875666 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
18875593 TTTACTTCAT
* *
18875603 GATGTTGAATCTCCAAAGATGCCCCAACATTC
1 GATGGTGAATCTCCAAAGATACCCCAACATTC
18875635 GATGGTGAATCTCCAAAGATACCCCAACATTC
1 GATGGTGAATCTCCAAAGATACCCCAACATTC
18875667 ATCATTTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (32 bp):
GATGGTGAATCTCCAAAGATACCCCAACATTC
Found at i:18876182 original size:12 final size:12
Alignment explanation
Indices: 18876165--18876200 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
18876155 CCTAGCATAC
18876165 ATATCTTTCTTT
1 ATATCTTTCTTT
18876177 ATATCTTTCTTT
1 ATATCTTTCTTT
*
18876189 ATATTTTTCTTT
1 ATATCTTTCTTT
18876201 TTTCCATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (12 bp):
ATATCTTTCTTT
Found at i:18876344 original size:45 final size:46
Alignment explanation
Indices: 18876259--18876348 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 46
18876249 ATTCATACTT
*
18876259 ATAATGCACCATTATGCATTTTTATATATGCAATTCTTTCATGCCA
1 ATAATGCACCATTATGCATTTTTATATATGCAATCCTTTCATGCCA
*
18876305 ATAATGCACC-TGTATGCA-TTTTATTTATG-ACATCCTTTCATGCC
1 ATAATGCACCAT-TATGCATTTTTATATATGCA-ATCCTTTCATGCC
18876349 CTTTTATAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
44 1 0.03
45 23 0.57
46 16 0.40
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (46 bp):
ATAATGCACCATTATGCATTTTTATATATGCAATCCTTTCATGCCA
Found at i:18876371 original size:46 final size:46
Alignment explanation
Indices: 18876321--18876448 Score: 193
Period size: 46 Copynumber: 2.8 Consensus size: 46
18876311 CACCTGTATG
* * *
18876321 CATTTTATTTATGACATCCTTTCATGCCCTTTTATAAGTGATTATA
1 CATTTCATTTATGGCATCCTTTCATGCCCTTATATAAGTGATTATA
* *
18876367 CATTTCATTTATGGCATCCTTTCATGCCCTTATATATGTTATTATA
1 CATTTCATTTATGGCATCCTTTCATGCCCTTATATAAGTGATTATA
* *
18876413 CATTTCATTTATGGCATCTTTTCATGCCCTTCTATA
1 CATTTCATTTATGGCATCCTTTCATGCCCTTATATA
18876449 CAACGTTATA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.48
Consensus pattern (46 bp):
CATTTCATTTATGGCATCCTTTCATGCCCTTATATAAGTGATTATA
Found at i:18876596 original size:68 final size:66
Alignment explanation
Indices: 18876481--18876684 Score: 239
Period size: 67 Copynumber: 3.0 Consensus size: 66
18876471 TAGTCTTTTA
* ** * * **
18876481 CTCAAAGGCATTTAACCTTCCATCTAACTAGCATAATTGACACTTTTCTGTCAAATGTGCAGCTA
1 CTCAAAGGCACTTAGTCTTTCATCTAACT-GCATAATTGA-AATTTTCTGTCAAATGCACAGCTA
18876546 GGC
64 GGC
* *
18876549 CTCAAAGGCACTTAGTCTTTCATCTAACTGTCATAATTGAAATTTTTCTATCAAATGCACAG-TT
1 CTCAAAGGCACTTAGTCTTTCATCTAACTG-CATAATTGAAA-TTTTCTGTCAAATGCACAGCTA
18876613 GGC
64 GGC
* * *
18876616 CTCAAAGGAACTTAGTCTTTCATCAAACTGGCATAATGGACAATTTTCTGTCAAATGCACAGCTA
1 CTCAAAGGCACTTAGTCTTTCATCTAACT-GCATAATTGA-AATTTTCTGTCAAATGCACAGCTA
18876681 GGC
64 GGC
18876684 C
1 C
18876685 ATTCATCTTT
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
67 59 0.50
68 58 0.50
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (66 bp):
CTCAAAGGCACTTAGTCTTTCATCTAACTGCATAATTGAAATTTTCTGTCAAATGCACAGCTAGG
C
Found at i:18876973 original size:55 final size:55
Alignment explanation
Indices: 18876846--18877400 Score: 702
Period size: 55 Copynumber: 10.1 Consensus size: 55
18876836 GATGCACCCG
* * * * * *
18876846 TAGTGCCTATACGG-TAGTTCATCCACTCATGAAGAATTTCATGG-GTTGCACACA
1 TAGTGCCTGTACGGTTA-TTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
* * *
18876900 TCGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCATGAATTTGCACACA
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
* * ** *
18876955 TAGTGCCTGTACGATTATTCATTAACTCATGATGAATTTTGTAGATTTGCACACA
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
* *
18877010 TAGTGCATGTACGGTTATTCATCAACTCATGATGAATTTCGTGGATTTGCACACA
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
* * * *
18877065 TCGGGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGTATACA
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
* ** *
18877120 TAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCTATGGATTTACACACA
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
* *** *
18877175 TAGTGCCTATACGGTTATTCATCAACTCATGATGAATTTTTTGGATTTGTACACA
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
* * * * *
18877230 TCGTGCATGTATGGTTATTCATCAACTTATGATGAATTCCTTGGATTTGCACACA
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
* * *
18877285 TAGTGCCTATACGGTTATTCATCAACTCATGATAAATTCCGTGGATTTGTACACA
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
** ** *
18877340 TAGTGAATGTACGGTTATTCATCAACTCATGATGAATTCCGT-GAAATGCACACT
1 TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
18877394 TAGTGCC
1 TAGTGCC
18877401 GAAACAGTTA
Statistics
Matches: 433, Mismatches: 66, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
54 48 0.11
55 385 0.89
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (55 bp):
TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA
Found at i:18877428 original size:54 final size:54
Alignment explanation
Indices: 18877353--18877562 Score: 323
Period size: 54 Copynumber: 3.9 Consensus size: 54
18877343 TGAATGTACG
* *
18877353 GTTATTCATCAAC-TCATGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACA
1 GTTATTCATCCACGT-AGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACA
** * *
18877407 GTTATTCATCCACGTAGGATGAATTATGTGAAATGCACACTTAGTGCCAAAACG
1 GTTATTCATCCACGTAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACA
* *
18877461 GTTATTCATTCACGTAGGATGAATTCCGTGAAATGCACACTTAGTTCCGAAACA
1 GTTATTCATCCACGTAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACA
*
18877515 GTTATTCATCCACGTAGGATGAATTCCGTGAAATGCATACTTAGTGCC
1 GTTATTCATCCACGTAGGATGAATTCCGTGAAATGCACACTTAGTGCC
18877563 TATTTGGTAA
Statistics
Matches: 140, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
54 139 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (54 bp):
GTTATTCATCCACGTAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACA
Found at i:18877929 original size:22 final size:22
Alignment explanation
Indices: 18877888--18877940 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
18877878 GGTTCCTCAA
18877888 TATCGATAC--CCATACCATGG
1 TATCGATACTACCATACCATGG
*
18877908 TATCGATACTACCATACTATGG
1 TATCGATACTACCATACCATGG
*
18877930 TACCGATACTA
1 TATCGATACTA
18877941 TGCTATGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 9 0.31
22 20 0.69
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (22 bp):
TATCGATACTACCATACCATGG
Found at i:18880834 original size:3 final size:3
Alignment explanation
Indices: 18880826--18880858 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
18880816 ATAAAGTAAT
18880826 TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA
18880859 TTTTTGTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:18881494 original size:66 final size:65
Alignment explanation
Indices: 18881368--18881556 Score: 213
Period size: 66 Copynumber: 2.9 Consensus size: 65
18881358 AGGGATAATG
* * * * *
18881368 GTTTCAAGAGAAACCAA-CTCAAAGATGATGCTTCAAGAGAAGCTGTCTCAAGAGAAACAAAA-T
1 GTTTCAAGGGAAA-CAATCTCAAAGATGGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACT
18881431 CC
65 -C
* *
18881433 GTTTCAAGGGAAACGATCTCAAAGATGGGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACT
1 GTTTCAAGGGAAACAATCTCAAAGAT-GGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACT
*
18881498 T
65 C
* * *
18881499 GTTTCAAAGAAAACAATCTCAAAGGTTGGTGTTTCATA-AGAAACTGTCTCAAGAGAGA
1 GTTTCAAGGGAAACAATCTCAAA-GATGGTGTTTCA-AGAGAAACTGTCTCAAGAGAGA
18881557 AAATTTGATT
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
64 2 0.02
65 21 0.20
66 79 0.75
67 4 0.04
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (65 bp):
GTTTCAAGGGAAACAATCTCAAAGATGGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTC
Found at i:18882937 original size:13 final size:13
Alignment explanation
Indices: 18882914--18882948 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
18882904 TCTTTCTTTA
18882914 TTTCTTTTGATCTT
1 TTTC-TTTGATCTT
*
18882928 TTTCTTTGATTTT
1 TTTCTTTGATCTT
18882941 TTTCTTTG
1 TTTCTTTG
18882949 CCCTTTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.06, C:0.11, G:0.09, T:0.74
Consensus pattern (13 bp):
TTTCTTTGATCTT
Found at i:18882939 original size:23 final size:22
Alignment explanation
Indices: 18882901--18882943 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
18882891 ATGCTTATTG
18882901 TCTTCTTTCTTTATTTCTTTTGA
1 TCTTCTTTCTTTATTT-TTTTGA
18882924 TCTT-TTTCTTTGATTTTTTT
1 TCTTCTTTCTTT-ATTTTTTT
18882944 CTTTGCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.07, C:0.14, G:0.05, T:0.74
Consensus pattern (22 bp):
TCTTCTTTCTTTATTTTTTTGA
Found at i:18884277 original size:31 final size:30
Alignment explanation
Indices: 18884138--18884300 Score: 134
Period size: 30 Copynumber: 5.4 Consensus size: 30
18884128 TATGATTAGT
* * ** *
18884138 AGAAACTT-GAGGACCAAAATAAAAAAAAT
1 AGAAACTTAAAGGACTAAAATAGCAAAAAC
* *
18884167 AGAAACTTAAAGGACTAAAATAGAAAAAAA
1 AGAAACTTAAAGGACTAAAATAGCAAAAAC
* * *
18884197 ATAAGCTTAAAAAGA-TAAAATAGCAAAAAC
1 AGAAACTT-AAAGGACTAAAATAGCAAAAAC
* * *
18884227 ATAAACTTATAA-GACTAAAATATCACAAAC
1 AGAAACTTA-AAGGACTAAAATAGCAAAAAC
* *
18884257 AGAAACTTCAAAGGACTAAAATAGCACAAAT
1 AGAAACTT-AAAGGACTAAAATAGCAAAAAC
*
18884288 AGAAATTTAAAGG
1 AGAAACTTAAAGG
18884301 GTTGACTCAT
Statistics
Matches: 112, Mismatches: 16, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
29 11 0.10
30 72 0.64
31 29 0.26
ACGTcount: A:0.60, C:0.11, G:0.12, T:0.17
Consensus pattern (30 bp):
AGAAACTTAAAGGACTAAAATAGCAAAAAC
Found at i:18886907 original size:17 final size:17
Alignment explanation
Indices: 18886885--18886922 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
18886875 AACGGTCAAC
18886885 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
18886902 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
18886919 GGTC
1 GGTC
18886923 GGGTTAGACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.11, C:0.24, G:0.47, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:18886912 original size:7 final size:7
Alignment explanation
Indices: 18886851--18886895 Score: 81
Period size: 7 Copynumber: 6.4 Consensus size: 7
18886841 GTCAAAGAAA
18886851 GTCAACG
1 GTCAACG
18886858 GTCAACG
1 GTCAACG
18886865 GTCAACG
1 GTCAACG
*
18886872 GTTAACG
1 GTCAACG
18886879 GTCAACG
1 GTCAACG
18886886 GTCAACG
1 GTCAACG
18886893 GTC
1 GTC
18886896 GGGTCGGGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.18
Consensus pattern (7 bp):
GTCAACG
Found at i:18886926 original size:22 final size:23
Alignment explanation
Indices: 18886878--18886926 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 23
18886868 AACGGTTAAC
18886878 GGTCAACGGTCAACGGTCGGGTCG
1 GGTCAACGGTC-ACGGTCGGGTCG
*
18886902 GGTCAACGGTC-GGGTCGGGTCG
1 GGTCAACGGTCACGGTCGGGTCG
18886924 GGT
1 GGT
18886927 TAGACCGGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 13 0.54
24 11 0.46
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (23 bp):
GGTCAACGGTCACGGTCGGGTCG
Found at i:18886944 original size:9 final size:9
Alignment explanation
Indices: 18886930--18886993 Score: 65
Period size: 10 Copynumber: 6.7 Consensus size: 9
18886920 GTCGGGTTAG
18886930 ACCGGTCAA
1 ACCGGTCAA
*
18886939 ACCGGTTCAG
1 ACCGG-TCAA
18886949 ACCGGTCAA
1 ACCGGTCAA
*
18886958 ACCGGTTCGA
1 ACCGG-TCAA
*
18886968 ACCTGTCCAA
1 ACCGGT-CAA
18886978 ACCGGTCAGA
1 ACCGGTCA-A
18886988 ACCGGT
1 ACCGGT
18886994 TTCCAGCAGC
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
9 16 0.36
10 29 0.64
ACGTcount: A:0.27, C:0.33, G:0.25, T:0.16
Consensus pattern (9 bp):
ACCGGTCAA
Found at i:18886989 original size:20 final size:20
Alignment explanation
Indices: 18886930--18886993 Score: 89
Period size: 19 Copynumber: 3.3 Consensus size: 20
18886920 GTCGGGTTAG
18886930 ACCGGTCAAACCGGTTCAG-
1 ACCGGTCAAACCGGTTCAGA
18886949 ACCGGTCAAACCGGTTC-GA
1 ACCGGTCAAACCGGTTCAGA
*
18886968 ACCTGTCCAAACCGG-TCAGA
1 ACCGGT-CAAACCGGTTCAGA
18886988 ACCGGT
1 ACCGGT
18886994 TTCCAGCAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.03
19 24 0.60
20 15 0.38
ACGTcount: A:0.27, C:0.33, G:0.25, T:0.16
Consensus pattern (20 bp):
ACCGGTCAAACCGGTTCAGA
Found at i:18894294 original size:17 final size:17
Alignment explanation
Indices: 18894272--18894304 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18894262 AACGGTCAAC
18894272 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
18894289 GGTCAACGGTCGGGTC
1 GGTCAACGGTCGGGTC
18894305 AGGTGGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.45, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:18894299 original size:7 final size:7
Alignment explanation
Indices: 18894252--18894282 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
18894242 GTGAAAGAAA
18894252 GTCAACG
1 GTCAACG
*
18894259 GTTAACG
1 GTCAACG
18894266 GTCAACG
1 GTCAACG
18894273 GTCAACG
1 GTCAACG
18894280 GTC
1 GTC
18894283 GGGTCGGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (7 bp):
GTCAACG
Found at i:18894358 original size:10 final size:9
Alignment explanation
Indices: 18894317--18894369 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
18894307 GTGGAGTTAG
18894317 ACCGGTCAA
1 ACCGGTCAA
** *
18894326 ATTGGTTCAG
1 ACCGG-TCAA
18894336 ACCGGTCAA
1 ACCGGTCAA
18894345 ACCGGTCGAA
1 ACCGGTC-AA
*
18894355 ACCGGTTAA
1 ACCGGTCAA
18894364 ACCGGT
1 ACCGGT
18894370 TTCCAACAGC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
9 21 0.60
10 14 0.40
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.19
Consensus pattern (9 bp):
ACCGGTCAA
Found at i:18895838 original size:3 final size:3
Alignment explanation
Indices: 18895830--18895884 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
18895820 ATAAAGTAAT
18895830 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
18895877 TAA TAA TA
1 TAA TAA TA
18895885 TTTTTGTAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:18896596 original size:64 final size:66
Alignment explanation
Indices: 18896466--18896642 Score: 225
Period size: 65 Copynumber: 2.7 Consensus size: 66
18896456 AAGAGAAGCC
* * **
18896466 GTCTCAAGAGAAACAAAGTTTGTTTCAAGGGAAATGATCTCAAAGATGGGTGTTTCAATAGAAAC
1 GTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGATGGGTGTTTCAATAGAAAC
18896531 T
66 T
* * * *
18896532 G-CTCAAGGGAGACAAAATTTGTTTCAAGGAAAACAATCTCAAAGGT-TGTGTTTC-ATAAGAAA
1 GTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGATGGGTGTTTCAAT-AGAAA
18896594 CT
65 CT
* * *
18896596 GTCTCAAGACAGACAAAATTTGTTTCAAGGGAAACAAACACAAAGAT
1 GTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGAT
18896643 TTGTTTTGTT
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
63 2 0.02
64 15 0.16
65 77 0.81
66 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (66 bp):
GTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGATGGGTGTTTCAATAGAAAC
T
Found at i:18896726 original size:34 final size:34
Alignment explanation
Indices: 18896687--18896769 Score: 112
Period size: 36 Copynumber: 2.4 Consensus size: 34
18896677 GTGTTTTAAA
18896687 GAGAAAATGTGTCAAGTGAGACAAAATTTGTTTT
1 GAGAAAATGTGTCAAGTGAGACAAAATTTGTTTT
* **
18896721 GAGAAAATTTGTCTCAAGTGAGATGAAATTTGTTTT
1 GAGAAAA--TGTGTCAAGTGAGACAAAATTTGTTTT
*
18896757 GAGAAAATTTGTC
1 GAGAAAATGTGTC
18896770 TCAAGCGAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
34 11 0.26
36 31 0.74
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.35
Consensus pattern (34 bp):
GAGAAAATGTGTCAAGTGAGACAAAATTTGTTTT
Found at i:18896729 original size:15 final size:15
Alignment explanation
Indices: 18896709--18896768 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 15
18896699 CAAGTGAGAC
18896709 AAAATTTGTTTTGAG
1 AAAATTTGTTTTGAG
*
18896724 AAAATTTGTCTCAAGTGAG
1 AAAATTTGT-T---TTGAG
18896743 ATGAAATTTGTTTTGAG
1 A--AAATTTGTTTTGAG
18896760 AAAATTTGT
1 AAAATTTGT
18896769 CTCAAGCGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
15 17 0.46
16 1 0.03
17 5 0.14
19 5 0.14
20 1 0.03
21 8 0.22
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (15 bp):
AAAATTTGTTTTGAG
Found at i:18896741 original size:36 final size:36
Alignment explanation
Indices: 18896698--18896780 Score: 139
Period size: 36 Copynumber: 2.3 Consensus size: 36
18896688 AGAAAATGTG
18896698 TCAAGTGAGACAAAATTTGTTTTGAGAAAATTTGTC
1 TCAAGTGAGACAAAATTTGTTTTGAGAAAATTTGTC
**
18896734 TCAAGTGAGATGAAATTTGTTTTGAGAAAATTTGTC
1 TCAAGTGAGACAAAATTTGTTTTGAGAAAATTTGTC
*
18896770 TCAAGCGAGAC
1 TCAAGTGAGAC
18896781 GACCCTTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.34
Consensus pattern (36 bp):
TCAAGTGAGACAAAATTTGTTTTGAGAAAATTTGTC
Found at i:18899294 original size:30 final size:30
Alignment explanation
Indices: 18899232--18899386 Score: 151
Period size: 30 Copynumber: 5.3 Consensus size: 30
18899222 CAGAAACTTG
18899232 AGGACTAAAATAG--AAAA-A-AAACTTAA
1 AGGACTAAAATAGCAAAAACATAAACTTAA
* ** *
18899258 AGGACTAAAATAGCACAAATGTAAGCTTAA
1 AGGACTAAAATAGCAAAAACATAAACTTAA
*
18899288 ATGACTAAAATAGCAAAAACATAAACTTAA
1 AGGACTAAAATAGCAAAAACATAAACTTAA
*
18899318 AGGACTAAAATAG-AATAAACAAAAACTTAAA
1 AGGACTAAAATAGCAA-AAACATAAACTT-AA
* * * *
18899349 AGGACTTAAATAACACAAAC-TGAAATTTAA
1 AGGACTAAAATAGCAAAAACAT-AAACTTAA
18899379 AGGACTAA
1 AGGACTAA
18899387 CTCATAAATA
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
26 13 0.12
28 3 0.03
29 2 0.02
30 64 0.61
31 22 0.21
32 1 0.01
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (30 bp):
AGGACTAAAATAGCAAAAACATAAACTTAA
Found at i:18899347 original size:60 final size:61
Alignment explanation
Indices: 18899232--18899386 Score: 160
Period size: 61 Copynumber: 2.6 Consensus size: 61
18899222 CAGAAACTTG
* *** *
18899232 AGGACTAAAATAG--AAAA-A-AAACTTAAAGGACTAAAATAGCACAAATGTAAGCTT-AA
1 AGGACTAAAATAGCAAAAACATAAACTTAAAGGACTAAAATAGAACAAACAAAAACTTAAA
* *
18899288 ATGACTAAAATAGCAAAAACATAAACTTAAAGGACTAAAATAGAATAAACAAAAACTTAAA
1 AGGACTAAAATAGCAAAAACATAAACTTAAAGGACTAAAATAGAACAAACAAAAACTTAAA
* * * *
18899349 AGGACTTAAATAACACAAAC-TGAAATTTAAAGGACTAA
1 AGGACTAAAATAGCAAAAACAT-AAACTTAAAGGACTAA
18899387 CTCATAAATA
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
56 12 0.15
58 4 0.05
59 1 0.01
60 31 0.38
61 33 0.41
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (61 bp):
AGGACTAAAATAGCAAAAACATAAACTTAAAGGACTAAAATAGAACAAACAAAAACTTAAA
Found at i:18900791 original size:22 final size:22
Alignment explanation
Indices: 18900757--18900813 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
18900747 GGGAGCGTAT
18900757 GGGTATCGATACTCCTTCATAG
1 GGGTATCGATACTCCTTCATAG
* *
18900779 GGGTATTGGTACTCCTTCATAG
1 GGGTATCGATACTCCTTCATAG
18900801 GGGTATCGATACT
1 GGGTATCGATACT
18900814 ACCTGTATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.33
Consensus pattern (22 bp):
GGGTATCGATACTCCTTCATAG
Found at i:18917201 original size:48 final size:48
Alignment explanation
Indices: 18917130--18917238 Score: 121
Period size: 48 Copynumber: 2.3 Consensus size: 48
18917120 AAATGTAGAT
* * * *
18917130 ATCAGAAATCAAAATAAAATTCAGAT-AAGATATCAGAATAGAATCCAA
1 ATCAGAAATCAGAACAAAATTCAGATCAAG-TATCAGAACAAAATCCAA
* * * *
18917178 ATCAGAAATCAGAACAGAATTCAGGTCATGTATCAGAACAAAATTCAA
1 ATCAGAAATCAGAACAAAATTCAGATCAAGTATCAGAACAAAATCCAA
*
18917226 GTCAGAAATCAGA
1 ATCAGAAATCAGA
18917239 TAGAATATTT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 49 0.96
49 2 0.04
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.20
Consensus pattern (48 bp):
ATCAGAAATCAGAACAAAATTCAGATCAAGTATCAGAACAAAATCCAA
Found at i:18917236 original size:24 final size:24
Alignment explanation
Indices: 18917131--18917238 Score: 85
Period size: 24 Copynumber: 4.5 Consensus size: 24
18917121 AATGTAGATA
* *
18917131 TCAGAAATCAAAATAAAATTC-AG
1 TCAGAAATCAGAACAAAATTCAAG
* * * * * *
18917154 ATAAGATATCAGAATAGAATCCAAA
1 -TCAGAAATCAGAACAAAATTCAAG
* *
18917179 TCAGAAATCAGAACAGAATTCAGG
1 TCAGAAATCAGAACAAAATTCAAG
*
18917203 TCATG-TATCAGAACAAAATTCAAG
1 TCA-GAAATCAGAACAAAATTCAAG
18917227 TCAGAAATCAGA
1 TCAGAAATCAGA
18917239 TAGAATATTT
Statistics
Matches: 65, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
23 1 0.02
24 62 0.95
25 2 0.03
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.20
Consensus pattern (24 bp):
TCAGAAATCAGAACAAAATTCAAG
Found at i:18920846 original size:3 final size:3
Alignment explanation
Indices: 18920838--18920870 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
18920828 ATAAAGTAAT
18920838 TAA TAA TAA TAA TAA TAA TAA TAA TCAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA
18920871 TTTTTGTAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:18921408 original size:131 final size:131
Alignment explanation
Indices: 18921039--18921418 Score: 317
Period size: 131 Copynumber: 2.9 Consensus size: 131
18921029 GCTCATACGT
* * ** * * * * * * *
18921039 GATGAAGAGGTCTGGTCGTCTAAGGGTGACACAACTCCTACGTGATGAAGAGATCTGGTCGGGGG
1 GATGAAGACGACTGGTTATCTAGGGGTGACA-AGCTTCTACGTGATGAACAGATATAGTCGGGGA
* * * *
18921104 ATGACATTA-TTCCTACGTGATGAGGAC-ATCTTGG-CCATCTTTAGGAATGATGATAACACGGT
65 ATGACA-CAGTTCCTACATGATGAGGACGA--TAGGACCATCTTTAGG---GATAATAACACGGT
*
18921166 TCGTACAC
124 TCCTACAC
*
18921174 GATGAAGACGACTGGTTATCTAGGGGTGACAAGCTTCTACGTGATGAACAGATCTAGTCGGGGAA
1 GATGAAGACGACTGGTTATCTAGGGGTGACAAGCTTCTACGTGATGAACAGATATAGTCGGGGAA
* ** * * *
18921239 TGATATGGTTCCTACGTGATGAGGACGGTAGGA-CATCTTTAGGGATAATAACACGGTTCCTACG
66 TGACACAGTTCCTACATGATGAGGACGATAGGACCATCTTTAGGGATAATAACACGGTTCCTACA
*
18921303 T
131 C
* ** * *
18921304 GAT-AAGGACGACTGGTTATCTAGGGGTGACACGGC-TCATACGTGATGAGGAGGTATAGTCAGT
1 GATGAA-GACGACTGGTTATCTAGGGGTGACA-AGCTTC-TACGTGATGAACAGATATAGTC-GG
* * *
18921367 GG-ATGACACAGTTCCTATATGATGAGGATGATA-TACCATCTTTAGGGATAAT
62 GGAATGACACAGTTCCTACATGATGAGGACGATAGGACCATCTTTAGGGATAAT
18921419 GGTTTCAAGA
Statistics
Matches: 205, Mismatches: 32, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
129 2 0.01
130 49 0.24
131 60 0.29
132 3 0.01
133 14 0.07
134 51 0.25
135 26 0.13
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (131 bp):
GATGAAGACGACTGGTTATCTAGGGGTGACAAGCTTCTACGTGATGAACAGATATAGTCGGGGAA
TGACACAGTTCCTACATGATGAGGACGATAGGACCATCTTTAGGGATAATAACACGGTTCCTACA
C
Found at i:18921534 original size:66 final size:65
Alignment explanation
Indices: 18921463--18921642 Score: 227
Period size: 66 Copynumber: 2.7 Consensus size: 65
18921453 CAAGAAAATA
* * * * *
18921463 TGTCTCAAGATAAACAAAATTCGTTTCAAGGGAAACGATCTCAAATATGGGTGTTTCA-AGAGAA
1 TGTCTCAAGAGAGACAAAATT-GTTTCAAGGGAAACAATCTCAAAGATGGATGTTTCATA-AGAA
18921527 AC
64 AC
* * * *
18921529 TGTCTCAAGGGAGACAAAACTTGTTTCAAGGGAAATAATCTCAAAGGTTGATGTTTCATAAGAAA
1 TGTCTCAAGAGAGACAAAA-TTGTTTCAAGGGAAACAATCTCAAAGATGGATGTTTCATAAGAAA
18921594 C
65 C
*
18921595 TGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAAACTCAAAGAT
1 TGTCTCAAGAGAGACAAAA-TTGTTTCAAGGGAAACAATCTCAAAGAT
18921643 TTGTTTTGTT
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
66 95 0.97
67 3 0.03
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (65 bp):
TGTCTCAAGAGAGACAAAATTGTTTCAAGGGAAACAATCTCAAAGATGGATGTTTCATAAGAAAC
Found at i:18921630 original size:36 final size:35
Alignment explanation
Indices: 18921514--18921630 Score: 86
Period size: 36 Copynumber: 3.4 Consensus size: 35
18921504 CAAATATGGG
*
18921514 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-T
* * ***
18921550 TGTTTCAAGGGAAA-TAATCTCAA-AG-G--TTGA-
1 TGTTTCAAGAGAAACT-GTCTCAAGAGAGACAAAAT
18921580 TGTTTCATA-AGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCA-AGAGAAACTGTCTCAAGAGAGACAAAA-T
*
18921616 TGTTTCAAGGGAAAC
1 TGTTTCAAGAGAAAC
18921631 AAACTCAAAG
Statistics
Matches: 59, Mismatches: 12, Indels: 20
0.65 0.13 0.22
Matches are distributed among these distances:
30 17 0.29
31 4 0.07
32 2 0.03
34 2 0.03
35 3 0.05
36 31 0.53
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26
Consensus pattern (35 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAT
Found at i:18921677 original size:32 final size:33
Alignment explanation
Indices: 18921614--18921678 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
18921604 AGAGACAAAA
18921614 TTTGTTTCAAGGGAAACAAACTCAAAGATTTGT
1 TTTGTTTCAAGGGAAACAAACTCAAAGATTTGT
*
18921647 TTTGTTTCTAGTGG-AA-AAACTTCAAA-ATTTGT
1 TTTGTTTCAAG-GGAAACAAAC-TCAAAGATTTGT
18921679 GTTTTAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 10 0.34
33 17 0.59
34 2 0.07
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (33 bp):
TTTGTTTCAAGGGAAACAAACTCAAAGATTTGT
Found at i:18924262 original size:14 final size:15
Alignment explanation
Indices: 18924236--18924265 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
18924226 AATGAAATGC
18924236 AGATGCAAAATGCAA
1 AGATGCAAAATGCAA
18924251 AGATGC-AAATGCAA
1 AGATGCAAAATGCAA
18924265 A
1 A
18924266 AATATTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.53, C:0.13, G:0.20, T:0.13
Consensus pattern (15 bp):
AGATGCAAAATGCAA
Found at i:18926664 original size:30 final size:30
Alignment explanation
Indices: 18926628--18926780 Score: 128
Period size: 30 Copynumber: 5.1 Consensus size: 30
18926618 CTTGAGGAGA
18926628 AAAATAGCAAAAAAAAAAATTTAAAGGACT
1 AAAATAGCAAAAAAAAAAATTTAAAGGACT
* ** * * ** *
18926658 AAAATAGCACAATCATAAACTTAAATAACA
1 AAAATAGCAAAAAAAAAAATTTAAAGGACT
* * * *
18926688 AAAATAGGAAAAACATAAACTTAAAGGACT
1 AAAATAGCAAAAAAAAAAATTTAAAGGACT
* * * *
18926718 AAAATATCACAAACAGAAACTTTAAAGGACT
1 AAAATAGCA-AAAAAAAAAATTTAAAGGACT
*
18926749 AAAATAG-AATAGAAAAAAATTTAAAGGACT
1 AAAATAGCAA-AAAAAAAAATTTAAAGGACT
18926779 AA
1 AA
18926781 CTCATAAATA
Statistics
Matches: 94, Mismatches: 27, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.01
30 72 0.77
31 21 0.22
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.18
Consensus pattern (30 bp):
AAAATAGCAAAAAAAAAAATTTAAAGGACT
Found at i:18926678 original size:59 final size:58
Alignment explanation
Indices: 18926581--18926780 Score: 197
Period size: 60 Copynumber: 3.3 Consensus size: 58
18926571 ACAGAACAAT
* * * *
18926581 AAAAAAATTTAAAGGACCAAAATATG-ATTAACAGAAACTT-GAGGAGAAAAATAGCAAAA
1 AAAAAAATTTAAAGGACTAAAATA-GCA-CAACAGAAACTTAAAGGACAAAAATAG-AAAA
* **
18926640 AAAAAAATTTAAAGGACTAAAATAGCACAATCATAAACTTAAATAACAAAAATAGGAAAA
1 AAAAAAATTTAAAGGACTAAAATAGCACAA-CAGAAACTTAAAGGACAAAAATA-GAAAA
* * * * * *
18926700 ACATAAACTTAAAGGACTAAAATATCACAAACAGAAACTTTAAAGGACTAAAATAGAATAG
1 AAAAAAATTTAAAGGACTAAAATAGCAC-AACAGAAAC-TTAAAGGACAAAAATAGAA-AA
18926761 AAAAAAATTTAAAGGACTAA
1 AAAAAAATTTAAAGGACTAA
18926781 CTCATAAATA
Statistics
Matches: 115, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
58 3 0.03
59 32 0.28
60 46 0.40
61 34 0.30
ACGTcount: A:0.60, C:0.10, G:0.12, T:0.18
Consensus pattern (58 bp):
AAAAAAATTTAAAGGACTAAAATAGCACAACAGAAACTTAAAGGACAAAAATAGAAAA
Found at i:18926746 original size:31 final size:30
Alignment explanation
Indices: 18926628--18926755 Score: 139
Period size: 30 Copynumber: 4.2 Consensus size: 30
18926618 CTTGAGGAGA
* * * *
18926628 AAAATAGCAAAAAAAAAAATTTAAAGGACT
1 AAAATAGCACAAACATAAACTTAAAGGACT
* ** *
18926658 AAAATAGCACAATCATAAACTTAAATAACA
1 AAAATAGCACAAACATAAACTTAAAGGACT
* *
18926688 AAAATAGGAAAAACATAAACTTAAAGGACT
1 AAAATAGCACAAACATAAACTTAAAGGACT
* *
18926718 AAAATATCACAAACAGAAACTTTAAAGGACT
1 AAAATAGCACAAACATAAAC-TTAAAGGACT
18926749 AAAATAG
1 AAAATAG
18926756 AATAGAAAAA
Statistics
Matches: 78, Mismatches: 19, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
30 62 0.79
31 16 0.21
ACGTcount: A:0.61, C:0.12, G:0.09, T:0.18
Consensus pattern (30 bp):
AAAATAGCACAAACATAAACTTAAAGGACT
Found at i:18928323 original size:14 final size:14
Alignment explanation
Indices: 18928301--18928330 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
18928291 AAAGTAATTA
*
18928301 ATAATAATAATAAT
1 ATAAAAATAATAAT
18928315 ATAAAAATAATAAT
1 ATAAAAATAATAAT
18928329 AT
1 AT
18928331 TTTTGAATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAAAATAATAAT
Found at i:18932076 original size:53 final size:53
Alignment explanation
Indices: 18931973--18932077 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
18931963 GTAGTTTCGA
* *
18931973 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTATGAATTTCCATTTTGG
1 CACTACGTGTGCATCCATGGTATTCATAATGAGTTTATGAATTTCAATTTTGG
*
18932026 CACTACGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTAT-AATTTTG
1 CACTACGTGTGCATCCATGGTATTCATAATGAGTTTATGAATT-TCAATTTTG
18932078 TTATATTAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
53 47 0.98
54 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (53 bp):
CACTACGTGTGCATCCATGGTATTCATAATGAGTTTATGAATTTCAATTTTGG
Found at i:18932336 original size:19 final size:18
Alignment explanation
Indices: 18932317--18932368 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
18932307 TAAATCATAT
18932317 TTTGATCTTATAATGGTA
1 TTTGATCTTATAATGGTA
* * *
18932335 TTTGA-ATGATAAATCGTA
1 TTTGATCTTAT-AATGGTA
18932353 GTTTGATCTTATAATG
1 -TTTGATCTTATAATG
18932369 TTTTAATCAT
Statistics
Matches: 25, Mismatches: 6, Indels: 5
0.69 0.17 0.14
Matches are distributed among these distances:
17 3 0.12
18 11 0.44
19 8 0.32
20 3 0.12
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (18 bp):
TTTGATCTTATAATGGTA
Found at i:18939179 original size:53 final size:53
Alignment explanation
Indices: 18939116--18939225 Score: 202
Period size: 53 Copynumber: 2.1 Consensus size: 53
18939106 ACTTTGTGTA
18939116 ATTTCAACACTATATGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACC
1 ATTTCAACACTATATGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACC
* *
18939169 ATTTCGACACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACC
1 ATTTCAACACTATATGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACC
18939222 ATTT
1 ATTT
18939226 TGTTATATTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (53 bp):
ATTTCAACACTATATGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACC
Found at i:18963867 original size:86 final size:85
Alignment explanation
Indices: 18963671--18963999 Score: 383
Period size: 86 Copynumber: 3.9 Consensus size: 85
18963661 TGAGAAAAGG
* * *
18963671 TGATGCTGGTCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGAAGCTAATCCAACT-CTT-
1 TGATGCTGATCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGATGCTAATACAACTCCTTA
*
18963734 GCGATGGACGAGCAAAACGT
66 GCGATGGACGAGCAAAACAT
* * * * *
18963754 TGATGCTGATCCAACTCCTTATTTGATGGGATCAAATGAAAAGGTGATGTTGATAAAACTCCTTA
1 TGATGCTGATCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGATGCTAATACAACTCCTT-
* * *
18963819 AGCAATGGATGAGCAAAACCT
65 AGCGATGGACGAGCAAAACAT
* * *
18963840 TGATGTTGATCCAACTCTTTATGTGATGGGATCAAATGAAATGGTGATGCTAATTCAACTCCTTA
1 TGATGCTGATCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGATGCTAATACAACTCCTTA
*
18963905 TGCGATGGACAAGCAAAACAT
66 -GCGATGGACGAGCAAAACAT
* * * * ** * **
18963926 TGATGCTGACCCAACTCCTTATGTGATAGAATCTAGCGAAATGTTGATGCTAACCCAACTCCTTA
1 TGATGCTGATCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGATGCTAATACAACTCCTTA
*
18963991 TGTGATGGA
66 -GCGATGGA
18964000 ATCTAGCGAA
Statistics
Matches: 207, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
83 52 0.25
84 3 0.01
85 1 0.00
86 151 0.73
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (85 bp):
TGATGCTGATCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGATGCTAATACAACTCCTTA
GCGATGGACGAGCAAAACAT
Found at i:18963906 original size:44 final size:44
Alignment explanation
Indices: 18963664--18964042 Score: 206
Period size: 44 Copynumber: 8.8 Consensus size: 44
18963654 TTGAAATTGA
* * *
18963664 GAAAAGGTGATGCTGGTCCAACTCCTTATGTGATGGGATCAAAT
1 GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
* * * * *
18963708 GAAATGGTGAAGCTAATCCAACT-C-T-TGCGAT-GGA-CGAGC
1 GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
* * * * *
18963747 AAAACGTTGATGCTGATCCAACTCCTTATTTGATGGGATCAAAT
1 GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
* * ** * ** * *
18963791 GAAAAGGTGATGTTGATAAAACTCCTTAAGCAAT-GGAT-GAGC
1 GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
* *** * * *
18963833 AAAACCTTGATGTTGATCCAACTCTTTATGTGATGGGATCAAAT
1 GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
* * * *
18963877 GAAATGGTGATGCTAATTCAACTCCTTATGCGAT-GGA-CAAGC
1 GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
* *** * * * * *
18963919 AAAACATTGATGCTGACCCAACTCCTTATGTGATAGAATCTAGC
1 GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
* * * * * *
18963963 GAAATGTTGATGCTAACCCAACTCCTTATGTGATGGAATCTAGC
1 GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
*
18964007 GAAAT-GTCGAAT-CT-AACTCAACTCCTTATGTGATGG
1 GAAATGGT-G-ATGCTGATC-CAACTCCTTATGTGATGG
18964043 ACAAGATAAG
Statistics
Matches: 251, Mismatches: 72, Indels: 24
0.72 0.21 0.07
Matches are distributed among these distances:
39 20 0.08
40 4 0.02
41 6 0.02
42 59 0.24
43 20 0.08
44 140 0.56
45 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (44 bp):
GAAATGGTGATGCTGATCCAACTCCTTATGTGATGGGATCAAAC
Found at i:18963988 original size:172 final size:169
Alignment explanation
Indices: 18963671--18963990 Score: 424
Period size: 172 Copynumber: 1.9 Consensus size: 169
18963661 TGAGAAAAGG
*
18963671 TGATGCTGGTCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGAAGCTAATCCAACTCTTGC
1 TGATGCTGATCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGAAGCTAATCCAACTCTTGC
* * * * * * *
18963736 GATGGACGAGCAAAACGTTGATGCTGATCCAACTCCTTATTTGATGGGATCAAATGAAAAGGTGA
66 GATGGACAAGCAAAACATTGATGCTGACCCAACTCCTTATGTGATAGAATCAAACGAAAAGGTGA
* * *
18963801 TGTTGATAAAACTCCTTAAGCAATGGATGAGCAAAACCT
131 TGCTAACAAAACTCCTTAAGCAATGGATGAGCAAAACCT
* * * *
18963840 TGATGTTGATCCAACTCTTTATGTGATGGGATCAAATGAAATGGTGATGCTAATTCAACTCCTTA
1 TGATGCTGATCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGAAGCTAATCCAACT-C-T-
* * * *
18963905 TGCGATGGACAAGCAAAACATTGATGCTGACCCAACTCCTTATGTGATAGAATCTAGCGAAATGT
63 TGCGATGGACAAGCAAAACATTGATGCTGACCCAACTCCTTATGTGATAGAATCAAACGAAAAGG
**
18963970 TGATGCTAACCCAACTCCTTA
128 TGATGCTAACAAAACTCCTTA
18963991 TGTGATGGAA
Statistics
Matches: 127, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
169 55 0.43
170 1 0.01
171 1 0.01
172 70 0.55
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (169 bp):
TGATGCTGATCCAACTCCTTATGTGATGGGATCAAATGAAATGGTGAAGCTAATCCAACTCTTGC
GATGGACAAGCAAAACATTGATGCTGACCCAACTCCTTATGTGATAGAATCAAACGAAAAGGTGA
TGCTAACAAAACTCCTTAAGCAATGGATGAGCAAAACCT
Found at i:18965652 original size:21 final size:20
Alignment explanation
Indices: 18965626--18965673 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
18965616 TCTTATTATG
18965626 TTTCTTTATGTCCTTTTCTTT
1 TTTCTTTATGTCCTTTTC-TT
* * *
18965647 TTTCTTCATTTTCTTTTCTT
1 TTTCTTTATGTCCTTTTCTT
18965667 TTTCTTT
1 TTTCTTT
18965674 CATGAACTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTCTTTATGTCCTTTTCTT
Found at i:18967449 original size:20 final size:21
Alignment explanation
Indices: 18967403--18967480 Score: 104
Period size: 21 Copynumber: 3.8 Consensus size: 21
18967393 CCGTTAGAAA
* *
18967403 GGGGGAAATCGGTACCCCTTG
1 GGGGGGAATCGGTACCCCCTG
* *
18967424 GGGGGGAATCTGTTCCCCCT-
1 GGGGGGAATCGGTACCCCCTG
18967444 GGGGGGAATCGGTACCCCCTG
1 GGGGGGAATCGGTACCCCCTG
*
18967465 GGGGGGAATCGATACC
1 GGGGGGAATCGGTACC
18967481 TTCTGGACAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
20 18 0.37
21 31 0.63
ACGTcount: A:0.17, C:0.26, G:0.40, T:0.18
Consensus pattern (21 bp):
GGGGGGAATCGGTACCCCCTG
Found at i:18973306 original size:19 final size:19
Alignment explanation
Indices: 18973282--18973339 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 19
18973272 GTCAACGGTT
18973282 CGGTCCAGGCGGTTCAGTC
1 CGGTCCAGGCGGTTCAGTC
* *
18973301 CGGTCCAGGCTGTTCGGTC
1 CGGTCCAGGCGGTTCAGTC
*
18973320 CGGTCCAGGCGGTCCAGTC
1 CGGTCCAGGCGGTTCAGTC
18973339 C
1 C
18973340 AAGCGGTTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.09, C:0.34, G:0.36, T:0.21
Consensus pattern (19 bp):
CGGTCCAGGCGGTTCAGTC
Found at i:18973385 original size:13 final size:13
Alignment explanation
Indices: 18973378--18973442 Score: 57
Period size: 13 Copynumber: 5.3 Consensus size: 13
18973368 CTCGGTCGAC
*
18973378 TCGGTCGGCTCGA
1 TCGGTCGGCTCGG
* *
18973391 TCGATCGACTCGG
1 TCGGTCGGCTCGG
*
18973404 TC----GGCTCGA
1 TCGGTCGGCTCGG
*
18973413 TCGGTCGGCTCAG
1 TCGGTCGGCTCGG
18973426 TCGGTCGGCTCGG
1 TCGGTCGGCTCGG
18973439 TCGG
1 TCGG
18973443 CTCAACTGGT
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
9 7 0.17
13 33 0.82
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (13 bp):
TCGGTCGGCTCGG
Found at i:18973401 original size:22 final size:22
Alignment explanation
Indices: 18973373--18973429 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
18973363 GTTAGCTCGG
18973373 TCGACTCGGTCGGCTCGATCGA
1 TCGACTCGGTCGGCTCGATCGA
*
18973395 TCGACTCGGTCGGCTCGATCGG
1 TCGACTCGGTCGGCTCGATCGA
* *
18973417 TCGGCTCAGTCGG
1 TCGACTCGGTCGG
18973430 TCGGCTCGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.11, C:0.32, G:0.35, T:0.23
Consensus pattern (22 bp):
TCGACTCGGTCGGCTCGATCGA
Found at i:18973438 original size:9 final size:9
Alignment explanation
Indices: 18973367--18973445 Score: 63
Period size: 9 Copynumber: 8.4 Consensus size: 9
18973357 CAGCCGGTTA
18973367 GCTCGGTCG
1 GCTCGGTCG
*
18973376 ACTCGGTCG
1 GCTCGGTCG
18973385 GCTCGATCGATCG
1 GCTCG---G-TCG
*
18973398 ACTCGGTCG
1 GCTCGGTCG
*
18973407 GCTCGATCG
1 GCTCGGTCG
*
18973416 G-TCGGCTCA
1 GCTCGG-TCG
18973425 G-TCGGTCG
1 GCTCGGTCG
18973433 GCTCGGTCG
1 GCTCGGTCG
18973442 GCTC
1 GCTC
18973446 AACTGGTTCA
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
8 6 0.11
9 41 0.73
10 1 0.02
12 1 0.02
13 7 0.12
ACGTcount: A:0.08, C:0.33, G:0.37, T:0.23
Consensus pattern (9 bp):
GCTCGGTCG
Found at i:18973438 original size:22 final size:22
Alignment explanation
Indices: 18973351--18973446 Score: 86
Period size: 22 Copynumber: 4.4 Consensus size: 22
18973341 AGCGGTTCGA
* * * *
18973351 TCGGCTCAGCCGGTTAGCTCGG
1 TCGGCTCAGTCGGCTCGATCGG
* * *
18973373 TCGACTCGGTCGGCTCGATCGA
1 TCGGCTCAGTCGGCTCGATCGG
* *
18973395 TCGACTCGGTCGGCTCGATCGG
1 TCGGCTCAGTCGGCTCGATCGG
*
18973417 TCGGCTCAGTCGG-TCGGCTCGG
1 TCGGCTCAGTCGGCTC-GATCGG
18973439 TCGGCTCA
1 TCGGCTCA
18973447 ACTGGTTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
21 2 0.03
22 60 0.97
ACGTcount: A:0.09, C:0.32, G:0.35, T:0.23
Consensus pattern (22 bp):
TCGGCTCAGTCGGCTCGATCGG
Found at i:18974544 original size:20 final size:20
Alignment explanation
Indices: 18974502--18974560 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
18974492 CCTACAGGGA
*
18974502 GGAATCGGTACCCCTTGGGGG
1 GGAATCGGTACCCCCT-GGGG
* *
18974523 GGAATCTGTTCCCCCTGGGG
1 GGAATCGGTACCCCCTGGGG
18974543 GGAATCGGTACCCCCTGG
1 GGAATCGGTACCCCCTGG
18974561 ACAATCTGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
20 20 0.61
21 13 0.39
ACGTcount: A:0.14, C:0.29, G:0.37, T:0.20
Consensus pattern (20 bp):
GGAATCGGTACCCCCTGGGG
Found at i:18974986 original size:153 final size:153
Alignment explanation
Indices: 18974708--18975015 Score: 598
Period size: 153 Copynumber: 2.0 Consensus size: 153
18974698 AACTTTGAAA
18974708 GACTTGGAGTAATATTTTGATATTCGAATAATTACATCGAATATACTTAGAAAATCTTTTCTAAA
1 GACTTGGAGTAATATTTTGATATTCGAATAATTACATCGAATATACTTAGAAAATCTTTTCTAAA
*
18974773 ATCTTAAAATTCATTTAACTTAATTTGTTATATCGAAACATCAAAATGTTTTCAACAATCTCCCC
66 ATCTTAAAATTCATTTAACTTAATTTGTTATATAGAAACATCAAAATGTTTTCAACAATCTCCCC
18974838 CTTTTTGATATAACAAAACATTT
131 CTTTTTGATATAACAAAACATTT
*
18974861 GACTTGGAGTAATATTTTGATATTCGAATAATTACATCGAATATACTTAGAAAATCTTTTGTAAA
1 GACTTGGAGTAATATTTTGATATTCGAATAATTACATCGAATATACTTAGAAAATCTTTTCTAAA
18974926 ATCTTAAAATTCATTTAACTTAATTTGTTATATAGAAACATCAAAATGTTTTCAACAATCTCCCC
66 ATCTTAAAATTCATTTAACTTAATTTGTTATATAGAAACATCAAAATGTTTTCAACAATCTCCCC
18974991 CTTTTTGATATAACAAAACATTT
131 CTTTTTGATATAACAAAACATTT
18975014 GA
1 GA
18975016 GTAATTTTAA
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 153 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.39
Consensus pattern (153 bp):
GACTTGGAGTAATATTTTGATATTCGAATAATTACATCGAATATACTTAGAAAATCTTTTCTAAA
ATCTTAAAATTCATTTAACTTAATTTGTTATATAGAAACATCAAAATGTTTTCAACAATCTCCCC
CTTTTTGATATAACAAAACATTT
Found at i:18978426 original size:17 final size:17
Alignment explanation
Indices: 18978404--18978447 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
18978394 TTCATAAATC
*
18978404 CAAAATCCAACAATCCA
1 CAAAATCAAACAATCCA
18978421 CAAAATCAAACAATCCA
1 CAAAATCAAACAATCCA
18978438 -AAATATCAAA
1 CAAA-ATCAAA
18978448 AATGTTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 3 0.12
17 22 0.88
ACGTcount: A:0.59, C:0.27, G:0.00, T:0.14
Consensus pattern (17 bp):
CAAAATCAAACAATCCA
Found at i:18980425 original size:19 final size:20
Alignment explanation
Indices: 18980379--18980438 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 20
18980369 TTCCCCTGTG
18980379 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TC-AA
18980402 GGGGGAATCGGTTCCCTC-A
1 GGGGGAATCGGTTCCCTCAA
* *
18980421 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
18980439 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.22
Consensus pattern (20 bp):
GGGGGAATCGGTTCCCTCAA
Found at i:18984286 original size:22 final size:21
Alignment explanation
Indices: 18984244--18984283 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
18984234 GAGTTTGTTT
*
18984244 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
18984265 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
18984284 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:18987114 original size:21 final size:21
Alignment explanation
Indices: 18987089--18987191 Score: 131
Period size: 20 Copynumber: 5.0 Consensus size: 21
18987079 CCGTTAGATA
18987089 GGGGGAAT-TGGTACCCCCTGG
1 GGGGGAATCT-GTACCCCCTGG
*
18987110 GGGGGAATCTGTTCCCCCT-G
1 GGGGGAATCTGTACCCCCTGG
* *
18987130 GGGGGAATCGGTATCCCCTGG
1 GGGGGAATCTGTACCCCCTGG
*
18987151 GGGGGAATCTGTTCCCCCT-G
1 GGGGGAATCTGTACCCCCTGG
*
18987171 GGGGGAATCTGTACTCCCTGG
1 GGGGGAATCTGTACCCCCTGG
18987192 ACAATCTGAT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
20 35 0.50
21 34 0.49
22 1 0.01
ACGTcount: A:0.13, C:0.26, G:0.39, T:0.22
Consensus pattern (21 bp):
GGGGGAATCTGTACCCCCTGG
Found at i:18987126 original size:20 final size:20
Alignment explanation
Indices: 18987089--18987182 Score: 120
Period size: 21 Copynumber: 4.6 Consensus size: 20
18987079 CCGTTAGATA
*
18987089 GGGGGAAT-TGGTACCCCCTGG
1 GGGGGAATCT-GTTCCCCCT-G
18987110 GGGGGAATCTGTTCCCCCTG
1 GGGGGAATCTGTTCCCCCTG
*
18987130 GGGGGAATCGGTAT-CCCCTGG
1 GGGGGAATCTGT-TCCCCCT-G
18987151 GGGGGAATCTGTTCCCCCTG
1 GGGGGAATCTGTTCCCCCTG
18987171 GGGGGAATCTGT
1 GGGGGAATCTGT
18987183 ACTCCCTGGA
Statistics
Matches: 66, Mismatches: 3, Indels: 9
0.85 0.04 0.12
Matches are distributed among these distances:
20 31 0.47
21 34 0.52
22 1 0.02
ACGTcount: A:0.13, C:0.24, G:0.40, T:0.22
Consensus pattern (20 bp):
GGGGGAATCTGTTCCCCCTG
Found at i:18987148 original size:41 final size:41
Alignment explanation
Indices: 18987089--18987188 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
18987079 CCGTTAGATA
* *
18987089 GGGGGAATTGGTACCCCCTGGGGGGGAATCTGTTCCCCCTG
1 GGGGGAATCGGTATCCCCTGGGGGGGAATCTGTTCCCCCTG
18987130 GGGGGAATCGGTATCCCCTGGGGGGGAATCTGTTCCCCCTG
1 GGGGGAATCGGTATCCCCTGGGGGGGAATCTGTTCCCCCTG
*
18987171 GGGGGAATCTGTACTCCC
1 GGGGGAATCGGTA-TCCC
18987189 TGGACAATCT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 51 0.93
42 4 0.07
ACGTcount: A:0.13, C:0.27, G:0.38, T:0.22
Consensus pattern (41 bp):
GGGGGAATCGGTATCCCCTGGGGGGGAATCTGTTCCCCCTG
Found at i:18988649 original size:21 final size:22
Alignment explanation
Indices: 18988603--18988664 Score: 83
Period size: 21 Copynumber: 2.9 Consensus size: 22
18988593 TTGGAGCGTG
*
18988603 GGGGGAATCGGTACACCCT-CA
1 GGGGGAATCGGTACCCCCTGCA
*
18988624 TGGGGAATCGGTACCCCCTGC-
1 GGGGGAATCGGTACCCCCTGCA
*
18988645 GGGGGAATCTGTACCCCCTG
1 GGGGGAATCGGTACCCCCTG
18988665 GATAATCTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 35 0.97
22 1 0.03
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.18
Consensus pattern (22 bp):
GGGGGAATCGGTACCCCCTGCA
Found at i:18996560 original size:12 final size:11
Alignment explanation
Indices: 18996545--18996594 Score: 64
Period size: 12 Copynumber: 4.3 Consensus size: 11
18996535 TAGAATACAT
*
18996545 ATAATAATAACA
1 ATAAAAATAA-A
18996557 ATAAAAAATAAA
1 AT-AAAAATAAA
18996569 ATAAAAAATAAA
1 AT-AAAAATAAA
18996581 ATAAAAATAAA
1 ATAAAAATAAA
18996592 ATA
1 ATA
18996595 GCATAATATA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
11 12 0.33
12 17 0.47
13 7 0.19
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (11 bp):
ATAAAAATAAA
Found at i:18998458 original size:19 final size:19
Alignment explanation
Indices: 18998430--18998470 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
18998420 TCAAATCTTT
18998430 TTCATCAGGCCCCTCGAAC
1 TTCATCAGGCCCCTCGAAC
*
18998449 TTCATTAGGCCCCTCGAAC
1 TTCATCAGGCCCCTCGAAC
18998468 TTC
1 TTC
18998471 CTTTTCAGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.39, G:0.15, T:0.27
Consensus pattern (19 bp):
TTCATCAGGCCCCTCGAAC
Found at i:19001465 original size:18 final size:19
Alignment explanation
Indices: 19001439--19001474 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
19001429 TAGAATACAT
*
19001439 ATAATAATAACAATAAAAA
1 ATAATAATAAAAATAAAAA
19001458 ATAA-AATAAAAATAAAA
1 ATAATAATAAAAATAAAA
19001475 TAGTATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (19 bp):
ATAATAATAAAAATAAAAA
Found at i:19005639 original size:13 final size:13
Alignment explanation
Indices: 19005621--19005650 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
19005611 AAATGAATAT
*
19005621 ATATCAAATTCAA
1 ATATCAAATTAAA
19005634 ATATCAAATTAAA
1 ATATCAAATTAAA
19005647 ATAT
1 ATAT
19005651 ACTATTCAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (13 bp):
ATATCAAATTAAA
Found at i:19006893 original size:22 final size:22
Alignment explanation
Indices: 19006867--19006929 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
19006857 AATTATTATG
* *
19006867 TAATAGTAATAAAATAATATAA
1 TAATAATAATAAAATAAAATAA
* * *
19006889 TAATATTATTAAAACAAAATAA
1 TAATAATAATAAAATAAAATAA
19006911 TAATAATAAATAAAATAAA
1 TAATAAT-AATAAAATAAA
19006930 TGAAATAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
22 24 0.73
23 9 0.27
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (22 bp):
TAATAATAATAAAATAAAATAA
Found at i:19008147 original size:21 final size:21
Alignment explanation
Indices: 19008091--19008141 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
19008081 TACGATAAAC
19008091 AGTATCGATATTGATGAAATT
1 AGTATCGATATTGATGAAATT
*
19008112 AGTATCGATATTGATGCAATT
1 AGTATCGATATTGATGAAATT
19008133 AGTATCGAT
1 AGTATCGAT
19008142 TCTGATATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (21 bp):
AGTATCGATATTGATGAAATT
Done.