genome.fa.s113.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000113.1 Hibiscus syriacus cultivar Beakdansim tig00000203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77722

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2359--2420	32	1.9	32	83	6	81	50	8	0	41	1.32
10369--10419	13	4.2	12	78	19	52	56	0	3	39	1.18
11966--12028	3	21.0	3	83	0	72	57	0	0	42	0.99
12098--12144	23	2.0	24	95	4	87	51	8	12	27	1.69
12177--12574	46	8.7	46	95	0	642	35	18	22	23	1.95
13371--13411	18	2.2	19	86	4	57	73	4	7	14	1.22
13598--13747	22	6.8	22	70	15	62	62	2	4	32	1.25
13840--13891	16	3.3	15	74	12	50	65	0	3	30	1.10
15257--16003	106	7.0	106	92	0	1201	22	17	24	34	1.96
16965--17019	22	2.5	22	100	0	110	23	12	27	36	1.91
17656--17712	13	4.1	14	77	18	57	0	14	7	78	0.94
17629--17712	20	4.0	21	75	17	68	1	14	5	78	0.99
17657--17701	24	1.9	24	86	4	65	0	13	6	80	0.91
17650--17707	31	1.9	30	89	10	91	0	13	5	81	0.86
17627--17706	19	4.6	18	72	23	64	1	13	5	80	0.95
21125--21162	19	2.0	20	89	5	60	68	0	23	7	1.16
22300--22365	29	2.3	30	82	10	77	68	1	7	22	1.24
22324--22374	15	3.4	15	75	8	59	68	0	7	23	1.15
22446--22499	22	2.5	22	80	14	58	64	0	3	31	1.11
22466--22513	14	3.6	14	76	18	50	60	0	2	37	1.09
22705--22754	26	2.0	25	84	11	66	62	0	4	34	1.14
22781--22824	18	2.5	17	82	10	52	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23262--23363	37	2.8	37	84	3	125	31	12	14	41	1.84
23997--24139	52	2.7	54	80	6	184	23	25	11	39	1.89
30775--30809	6	5.7	6	93	3	52	54	11	14	20	1.70
30976--31062	43	2.0	44	86	2	122	34	25	11	28	1.91
32390--32414	13	1.9	13	100	0	50	72	0	0	28	0.86
33258--33326	30	2.2	30	80	15	77	34	5	15	43	1.71
33416--33495	21	4.1	21	73	18	91	20	40	27	12	1.88
33422--33493	36	2.0	36	91	0	117	20	37	27	13	1.91
33443--33472	15	2.0	15	100	0	60	26	33	26	13	1.93
33521--33564	21	2.1	21	95	0	79	13	43	27	15	1.85
33600--33641	21	2.0	21	95	0	75	23	21	28	26	1.99
33670--33709	20	1.9	21	85	10	55	37	35	10	17	1.83
33924--33993	34	2.1	32	86	5	95	31	15	30	22	1.95
36929--37008	21	4.1	21	73	18	91	20	40	27	12	1.88
36935--37006	36	2.0	36	91	0	117	20	37	27	13	1.91
36956--36985	15	2.0	15	100	0	60	26	33	26	13	1.93
37034--37077	21	2.1	21	100	0	88	13	45	27	13	1.81
37113--37154	21	2.0	21	95	0	75	23	21	28	26	1.99
37183--37222	20	1.9	21	85	10	55	37	35	10	17	1.83
37778--37939	77	2.1	76	85	6	220	53	3	3	39	1.34
39305--39378	3	24.0	3	89	5	96	60	0	0	39	0.97
44640--44700	3	19.3	3	80	6	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44649--44689	21	2.0	21	100	0	82	46	0	0	53	1.00
46004--46053	15	3.3	15	73	15	50	28	6	0	66	1.15
46298--46352	27	2.0	29	82	7	69	47	1	0	50	1.11
46837--46892	26	2.1	25	83	9	67	32	3	1	62	1.23
46886--46914	15	2.0	15	93	6	51	31	6	0	62	1.22
46874--46920	13	3.5	13	81	16	51	27	4	0	68	1.08
54056--54394	113	3.0	114	89	1	520	34	15	19	30	1.93
56373--56531	54	3.0	54	80	8	184	38	13	22	25	1.91
56883--56937	22	2.5	22	90	0	92	34	10	12	41	1.78
57456--57824	185	2.0	183	96	1	684	32	14	14	37	1.87
57765--58052	76	3.8	76	97	0	540	23	19	22	34	1.96
58178--58512	76	4.4	76	94	0	553	25	18	21	35	1.95
57584--58466	413	2.1	414	96	0	1615	27	16	18	36	1.93
58178--58512	153	2.2	152	92	0	562	25	18	21	35	1.95
58647--58725	31	2.6	31	84	6	90	35	3	0	60	1.15
58675--58727	3	17.3	3	84	3	70	37	0	0	62	0.96
60013--60067	15	3.7	15	74	13	51	29	5	1	63	1.27
60312--60366	27	2.0	29	82	7	69	47	1	0	50	1.11
61209--61263	19	2.9	19	82	12	69	50	10	20	18	1.76
63190--63260	36	2.0	36	88	0	106	22	15	26	35	1.94

Tables:   1

The End!