genome.fa.s1131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001131.1 Hibiscus syriacus cultivar Beakdansim tig00002247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109397

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2921--2954	18	1.9	18	88	5	52	26	29	26	17	1.98
3650--3689	21	2.0	20	90	5	62	30	0	2	67	1.04
4281--4337	29	2.0	29	85	0	78	12	29	26	31	1.92
4488--4544	27	2.2	25	77	14	62	5	50	17	26	1.67
4731--4813	26	3.3	26	89	3	125	45	9	34	9	1.70
7587--7761	60	3.0	59	83	10	211	42	12	3	41	1.59
7638--7699	24	2.7	23	80	14	83	41	16	3	38	1.64
7614--7770	11	13.5	11	71	20	81	42	12	3	41	1.59
7732--7764	14	2.4	14	94	0	57	42	9	0	48	1.35
7875--7919	14	3.1	15	84	9	58	46	11	4	37	1.60
7878--7919	15	2.9	14	85	3	57	47	9	4	38	1.57
8027--8110	20	4.2	20	76	8	64	50	8	0	41	1.33
8042--8105	23	2.9	23	84	11	80	53	6	0	40	1.26
8054--8110	13	4.3	13	79	2	60	50	7	0	42	1.29
8266--8292	14	1.9	14	100	0	54	44	18	0	37	1.50
8246--8381	59	2.4	57	91	2	209	44	13	1	41	1.52
11340--11371	15	2.1	15	94	0	55	46	9	0	43	1.35
14616--14663	23	2.1	23	84	3	62	25	22	31	20	1.98
14616--14674	22	2.6	23	81	2	66	23	23	27	25	2.00
17906--17942	20	1.9	20	94	5	67	64	5	2	27	1.28
18536--18757	117	1.9	117	83	5	288	29	14	8	47	1.73
19973--20023	20	2.5	20	100	0	102	19	25	35	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20532--20580	21	2.3	21	85	3	71	53	16	0	30	1.43
20796--20873	25	3.2	25	82	10	108	30	16	20	32	1.95
21102--21173	29	2.5	29	86	0	99	25	29	31	13	1.94
21218--21278	29	2.1	29	87	0	86	27	26	31	14	1.95
22649--22677	13	2.1	14	93	6	51	55	0	24	20	1.44
39164--39460	31	9.5	31	75	7	260	32	19	18	29	1.95
39165--39464	63	4.8	63	92	0	485	31	19	18	30	1.96
39830--39854	8	3.1	8	100	0	50	12	24	12	52	1.72
40484--40538	20	2.8	20	100	0	110	25	34	16	23	1.95
41994--42070	36	2.1	36	85	4	102	16	16	14	51	1.76
53574--54317	182	4.1	182	88	2	1062	41	13	16	28	1.86
56153--56208	24	2.5	23	80	11	71	44	0	7	48	1.30
56499--56528	15	2.0	15	93	0	51	20	10	56	13	1.65
56882--56920	18	2.2	18	100	0	78	56	0	38	5	1.22
58448--58496	19	2.6	19	96	0	89	32	2	10	55	1.45
58945--59887	196	4.8	197	86	5	1228	37	13	16	32	1.88
58945--59887	395	2.4	392	87	3	1326	37	13	16	32	1.88
60170--60200	15	2.0	16	93	6	55	32	38	3	25	1.72
62772--62805	12	2.8	12	86	0	50	44	5	2	47	1.42
64119--65232	199	5.6	200	83	4	1304	38	14	14	32	1.87
64121--65232	399	2.8	398	91	2	1705	38	14	14	32	1.87
69560--69646	36	2.5	35	83	7	104	31	8	17	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74141--74227	36	2.5	35	83	7	104	31	8	17	43	1.78
87771--88064	144	2.0	144	90	1	464	16	38	22	22	1.93
89316--89363	19	2.5	19	80	10	53	47	2	0	50	1.12
90922--90960	18	2.2	17	82	8	51	41	17	17	23	1.91
91030--91070	21	1.9	22	90	5	66	39	12	19	29	1.88
96041--96186	64	2.3	64	85	5	188	32	21	17	29	1.96
100203--100346	64	2.3	62	84	8	175	31	21	17	29	1.96
101012--101081	30	2.3	30	77	0	77	24	17	25	32	1.96
103214--103268	2	29.0	2	85	10	80	47	0	1	50	1.11
103458--103514	18	3.2	18	89	0	96	15	33	3	47	1.63
105057--105280	115	2.0	114	90	0	349	25	20	15	38	1.91
105513--105573	21	3.2	21	65	29	64	31	4	21	42	1.74
105512--105623	35	3.2	35	90	6	172	31	4	20	43	1.72

Tables:   1

The End!