genome.fa.s1132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001132.1 Hibiscus syriacus cultivar Beakdansim tig00002255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95412

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475--520	12	3.8	12	88	0	65	82	4	4	8	0.93
4480--4627	73	2.0	72	89	1	224	27	20	12	39	1.89
4419--4621	36	5.6	36	80	4	228	26	20	13	38	1.90
4419--4640	109	2.0	109	85	3	295	26	20	13	38	1.91
4506--4763	124	2.1	123	86	2	365	25	22	12	39	1.89
4630--4768	36	3.9	35	86	3	179	27	20	12	39	1.88
4543--4725	87	2.1	88	87	5	273	25	22	12	39	1.89
4579--4691	51	2.2	51	88	3	156	23	21	15	39	1.91
13288--13338	26	2.0	26	96	0	93	45	19	19	15	1.86
13283--13348	26	2.8	23	80	14	89	45	21	16	16	1.85
15476--15508	15	2.1	16	88	5	50	57	0	3	39	1.14
15681--15720	20	2.0	20	95	4	73	30	0	0	70	0.88
15694--15748	21	2.5	23	80	14	62	38	0	0	61	0.96
17111--17195	38	2.2	38	97	0	161	27	21	18	32	1.97
17589--17630	21	2.0	21	90	0	66	35	16	16	30	1.92
20833--20894	23	2.7	23	82	0	88	24	17	19	38	1.93
21416--21450	2	17.5	2	100	0	70	51	0	0	48	1.00
22236--22379	77	1.9	77	86	0	207	37	7	18	36	1.79
23371--23577	73	2.8	72	75	9	195	45	8	14	32	1.74
29539--29625	35	2.5	34	80	12	97	54	10	8	27	1.62
29891--29916	12	2.2	12	100	0	52	7	34	23	34	1.83
31949--31981	16	1.9	18	88	11	52	60	3	0	36	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34759--34888	47	2.7	49	80	8	135	29	20	6	43	1.78
37563--37596	13	2.4	14	85	14	52	50	0	0	50	1.00
37563--37596	14	2.5	13	90	9	50	50	0	0	50	1.00
37573--37629	23	2.5	22	75	11	60	45	0	0	54	0.99
37560--37636	37	2.1	34	81	9	82	42	0	0	57	0.99
37614--37660	24	1.9	24	87	12	69	38	0	0	61	0.96
38789--38824	17	2.1	17	90	10	56	41	0	5	52	1.24
39397--39486	42	2.1	42	85	4	119	25	33	17	23	1.96
39459--39510	21	2.5	21	72	12	52	19	34	25	21	1.96
40536--41537	136	7.4	135	86	2	1326	33	24	18	23	1.96
40536--41537	273	3.7	270	86	3	1348	33	24	18	23	1.96
41708--41755	21	2.4	21	86	6	64	45	8	18	27	1.78
42437--42592	31	5.0	31	82	4	174	39	21	17	21	1.93
42440--42592	62	2.5	62	86	0	207	39	21	16	22	1.92
48108--48177	29	2.4	29	79	11	81	14	30	28	27	1.95
48250--48310	14	4.4	14	89	4	88	9	34	34	21	1.86
49611--49656	23	1.9	23	86	8	65	45	4	4	45	1.43
49618--49670	23	2.3	22	78	18	54	41	3	5	49	1.44
50049--50085	14	2.6	14	91	0	65	13	21	43	21	1.87
50727--50781	21	2.6	21	97	0	101	1	45	0	52	1.11
54932--54993	29	2.2	29	82	2	72	16	9	24	50	1.75
54920--54993	29	2.7	27	77	8	71	16	9	24	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62200--62276	31	2.5	31	78	2	82	28	31	25	14	1.95
63177--63230	5	10.6	5	76	11	56	7	22	50	20	1.73
63159--63230	22	3.4	22	90	5	105	11	20	47	20	1.81
63204--63231	14	2.0	14	100	0	56	7	21	50	21	1.72
63229--63278	9	5.1	10	74	13	50	28	30	22	20	1.98
63227--63278	20	2.7	19	87	3	68	26	28	25	19	1.98
68207--68283	31	2.5	31	78	2	82	28	31	25	14	1.95
68162--68283	63	1.9	63	81	6	149	27	28	27	17	1.97
69187--69240	5	10.6	5	76	11	56	7	22	50	20	1.73
69174--69240	22	3.2	22	93	6	113	10	22	47	19	1.79
69214--69241	14	2.0	14	100	0	56	7	21	50	21	1.72
69239--69288	9	5.1	10	74	13	50	28	30	22	20	1.98
69237--69288	20	2.7	19	87	3	68	26	28	25	19	1.98
70668--70752	2	42.5	2	97	0	161	50	1	48	0	1.08
71979--72003	2	12.5	2	100	0	50	48	0	0	52	1.00
72068--72094	2	13.5	2	100	0	54	48	0	0	51	1.00
72205--72278	25	2.9	26	77	18	68	33	4	0	62	1.14
73540--73577	19	2.0	20	89	5	60	7	23	0	68	1.16
76831--76872	16	2.7	15	85	7	57	83	4	9	2	0.88
77488--77542	22	2.5	22	96	0	101	36	25	12	25	1.91
77956--77992	18	2.0	19	89	5	58	18	5	35	40	1.74
78367--79524	106	11.0	106	89	2	1703	34	24	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79852--79952	37	2.7	37	84	0	112	39	12	14	32	1.85
80486--80516	2	15.5	2	100	0	62	48	0	0	51	1.00
80392--80574	93	1.9	92	79	10	199	30	4	2	61	1.31
80650--80759	22	4.9	21	74	25	77	33	4	0	61	1.16
80837--80883	20	2.3	21	82	17	64	21	8	0	70	1.14
80847--80888	5	8.6	5	84	2	50	19	4	0	76	0.96
90134--90183	14	3.5	14	76	20	50	50	0	2	48	1.12
90163--90203	20	2.0	20	90	9	66	51	0	0	48	1.00
90254--90297	3	15.0	3	86	13	65	31	0	0	68	0.90
90259--90294	19	1.9	18	94	5	63	33	0	0	66	0.92
90338--90437	37	2.7	37	100	0	200	29	45	19	7	1.76
90361--90431	22	3.5	22	69	25	75	28	43	19	8	1.80
90438--90512	25	3.0	25	96	0	132	38	20	14	26	1.91
92051--92090	17	2.4	17	87	8	55	20	0	5	75	0.99
93657--93681	13	1.9	13	100	0	50	20	0	0	80	0.72

Tables:   1

The End!