Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001133.1 Hibiscus syriacus cultivar Beakdansim tig00002260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49759

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1008--1056
22
2.2
22
82
7
64
32
30
28
8
1.86
2627--3053
103
4.2
103
93
3
738
26
14
23
35
1.93
3061--3129
23
3.0
23
78
0
66
21
20
24
33
1.97
19079--19173
27
3.6
27
90
2
149
29
10
15
44
1.80
22867--22988
27
4.6
27
93
2
203
29
12
16
41
1.85
32877--32936
24
2.5
24
97
0
111
25
16
11
46
1.81
42137--42177
21
1.9
22
90
5
66
56
2
0
41
1.13
43333--43366
16
2.2
15
89
5
50
61
2
0
35
1.11
43368--43403
11
3.3
11
88
0
54
30
2
13
52
1.55
43563--43595
9
3.8
9
88
8
50
54
3
6
36
1.41
43590--43623
17
2.1
16
88
5
50
47
0
2
50
1.16
43591--43766
74
2.4
72
85
5
221
47
3
5
43
1.42
43678--43846
2
85.5
2
69
15
102
46
3
5
44
1.43
43841--43942
48
2.1
48
85
7
136
50
9
7
32
1.64
43831--44451
321
2.0
315
91
4
1025
44
9
8
36
1.68
44157--44252
46
2.1
46
86
3
131
52
8
8
31
1.61
44382--44525
55
2.7
54
79
10
161
40
8
9
40
1.68
44422--44461
20
2.0
20
90
0
62
45
5
10
40
1.60
44443--44566
13
9.5
13
69
16
51
42
8
5
43
1.57
44363--44597
92
2.6
89
77
16
225
41
8
8
42
1.64
44635--44714
22
3.7
21
76
18
67
41
6
5
47
1.50
44733--44830
25
4.0
25
76
11
87
46
3
5
44
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44832--44895
32
2.0
32
87
9
94
40
1
3
54
1.25
44835--44975
76
1.9
76
81
12
175
43
2
1
51
1.25
44940--45032
47
1.9
46
83
16
118
49
0
1
49
1.07
44917--45012
34
2.9
32
79
8
104
50
1
0
48
1.07
45712--45759
6
8.0
6
90
0
78
47
47
2
2
1.25
46187--46426
80
3.0
80
98
1
464
12
13
26
47
1.79
47190--47237
20
2.4
20
96
0
87
45
4
29
20
1.70
48890--48932
19
2.3
19
95
0
77
32
2
27
37
1.70
49575--49618
20
2.2
20
95
0
79
47
6
0
45
1.29
49685--49753
29
2.3
30
80
9
79
44
1
0
53
1.09

Tables:   1

The End!