Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001138.1 Hibiscus syriacus cultivar Beakdansim tig00002268_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87266

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
850--887
20
1.9
20
88
0
58
50
21
15
13
1.78
1144--1186
21
2.0
22
90
4
70
23
16
41
18
1.89
1370--1418
18
2.7
18
87
0
62
22
20
28
28
1.98
1450--1520
19
3.7
19
75
3
79
19
22
18
39
1.92
1431--1516
39
2.2
40
95
2
156
18
24
16
40
1.90
2494--2593
49
2.0
49
100
0
200
51
10
8
31
1.64
7213--7252
17
2.2
19
86
8
57
25
0
2
72
0.97
11808--11838
12
2.5
13
94
5
55
80
0
19
0
0.71
11804--11835
15
2.1
16
94
5
57
81
0
18
0
0.70
14108--14370
83
3.2
83
97
1
483
28
14
21
34
1.93
15620--15789
75
2.3
75
82
4
200
34
17
20
28
1.95
16631--16749
54
2.3
53
85
4
152
38
15
21
24
1.92
17104--17158
22
2.5
22
93
0
101
34
10
14
40
1.81
17834--19964
76
28.5
76
96
2
3939
21
21
22
35
1.96
17834--19964
226
9.5
227
96
2
3886
21
21
22
35
1.96
23370--23394
2
12.5
2
100
0
50
52
0
0
48
1.00
24431--24531
53
1.9
53
95
0
184
41
20
14
22
1.89
26937--27133
39
5.1
39
91
0
286
36
28
9
24
1.87
27995--28161
81
2.1
81
97
0
316
30
14
19
34
1.92
29390--29416
13
2.1
13
100
0
54
44
0
11
44
1.39
32128--32156
2
14.5
2
100
0
58
48
0
0
51
1.00
32785--32817
3
11.0
3
100
0
66
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34701--34733
2
16.5
2
100
0
66
48
0
0
51
1.00
47477--47533
3
18.7
3
79
16
64
61
0
0
38
0.96
47479--47534
15
3.7
15
80
19
71
60
0
0
39
0.97
47467--47538
28
2.4
31
90
9
114
58
0
0
41
0.98
47477--47538
31
2.0
32
93
6
110
59
0
0
40
0.97
47755--48010
109
2.3
111
82
2
318
30
16
16
37
1.90
47920--48071
73
2.1
73
96
0
277
35
15
19
29
1.93
47993--48164
93
1.8
93
96
0
317
32
16
18
31
1.94
48066--48277
113
1.9
113
95
0
388
30
17
16
34
1.93
47993--48480
206
2.4
206
98
0
940
31
17
17
32
1.94
48179--48370
93
2.1
93
96
0
357
31
17
18
32
1.94
48272--48693
113
3.7
113
91
6
702
29
18
16
35
1.93
49421--49976
83
6.7
83
96
0
961
37
23
12
26
1.90
51117--51177
8
7.8
8
78
14
56
0
14
0
85
0.60
51117--51179
11
5.5
11
81
10
81
0
14
0
85
0.59
58510--58541
15
2.1
15
94
0
55
46
9
18
25
1.79
61830--61884
26
2.0
27
83
13
69
49
1
5
43
1.36
63918--63971
3
17.7
3
78
17
58
61
0
0
38
0.96
63907--63976
28
2.4
29
93
6
117
57
0
0
42
0.99
66966--67035
19
3.8
18
77
19
72
75
0
14
10
1.04
66998--67050
22
2.5
22
82
8
58
75
0
15
9
1.04
68071--68654
55
10.7
55
82
6
652
33
15
22
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72572--72602
16
1.9
16
93
0
53
25
16
29
29
1.96
75536--75560
2
12.5
2
100
0
50
48
0
0
52
1.00
76510--76728
101
2.1
102
90
1
341
46
12
9
32
1.73
77116--77149
17
2.0
17
88
11
52
35
2
5
55
1.39
79345--79385
21
2.0
21
90
0
64
21
21
26
29
1.99
79989--80067
22
3.8
22
75
13
67
27
27
21
22
1.99
85492--85545
14
3.9
14
85
0
81
24
1
25
48
1.61
85507--85560
21
2.6
21
75
0
63
24
3
27
44
1.70
85494--85553
28
2.1
28
81
0
66
25
1
28
45
1.63
85612--85641
7
4.3
7
91
0
51
16
0
36
46
1.47
85688--85750
11
5.9
11
69
14
51
38
1
3
57
1.24
86020--86154
62
2.2
62
93
2
236
50
11
7
31
1.65

Tables:   1

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