genome.fa.s1140.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001140.1 Hibiscus syriacus cultivar Beakdansim tig00002274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59355

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487--548	3	20.7	3	78	18	67	29	3	0	67	1.06
563--616	23	2.3	25	84	12	78	38	11	1	48	1.50
2564--2615	18	2.9	18	91	8	88	55	0	0	44	0.99
6348--6406	10	5.7	10	73	15	57	57	20	11	10	1.63
6352--6400	16	3.1	16	93	0	89	57	22	12	8	1.61
7478--7547	24	2.9	24	91	0	104	60	20	10	10	1.57
7503--7554	14	4.0	14	78	19	67	51	25	13	9	1.71
10309--10364	20	2.7	21	89	10	89	58	3	7	30	1.42
16879--17034	65	2.4	65	78	9	160	31	21	17	30	1.96
20037--20372	131	2.6	130	84	1	429	32	10	16	40	1.83
25751--25808	26	2.5	23	86	13	75	36	20	22	20	1.95
33784--33937	7	20.6	7	73	20	93	76	0	15	7	1.00
33784--33937	17	9.9	15	72	22	81	76	0	15	7	1.00
33765--33902	53	2.5	55	90	5	217	74	0	17	7	1.04
33765--33926	53	2.9	56	83	13	185	75	0	16	8	1.03
33784--33932	20	7.3	20	68	25	75	77	0	15	7	0.98
34269--34295	2	13.5	2	100	0	54	51	0	0	48	1.00
36059--36456	134	3.0	133	82	5	471	32	20	16	30	1.95
38673--39037	131	2.8	131	83	4	463	30	12	16	39	1.86
48734--48776	16	2.8	16	80	19	56	13	9	6	69	1.35
54307--54345	2	19.5	2	100	0	78	48	0	0	51	1.00
55870--55906	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56572--56617	19	2.3	20	81	7	58	28	28	17	26	1.98
56696--56747	21	2.5	21	81	3	61	38	19	25	17	1.93
56736--56849	20	5.7	20	83	6	113	31	25	18	24	1.97
56733--56849	61	1.9	61	85	0	162	33	24	17	23	1.97
57403--57448	20	2.4	19	85	7	65	47	26	15	10	1.78
57444--57628	19	10.1	19	74	14	156	12	22	21	43	1.85
57444--57628	33	5.1	38	76	12	156	12	22	21	43	1.85
57571--57628	20	2.9	20	80	10	64	13	24	18	43	1.87
58914--58971	20	2.9	20	89	0	89	37	20	24	17	1.93
58994--59066	14	4.5	15	74	22	60	13	20	19	46	1.83
58990--59056	18	3.8	19	83	16	92	13	22	17	46	1.83
59155--59191	14	2.6	14	86	0	56	48	21	0	29	1.50

Tables:   1

The End!