genome.fa.s1141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001141.1 Hibiscus syriacus cultivar Beakdansim tig00002277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70707

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7796--7852	14	4.4	14	78	17	59	8	12	24	54	1.65
7797--7858	24	2.6	24	92	0	97	9	11	24	54	1.65
7797--7871	24	3.1	24	86	0	78	12	10	21	56	1.66
8714--8865	64	2.4	64	84	2	180	30	23	16	30	1.96
17363--17483	45	2.7	45	100	0	242	29	19	17	33	1.95
18568--18646	23	3.4	24	82	1	81	31	18	20	29	1.97
18847--18897	16	3.3	16	86	5	70	11	7	17	62	1.51
18956--18986	16	1.9	16	93	0	53	6	9	22	61	1.50
21628--21684	28	2.0	28	86	6	80	33	14	17	35	1.90
25961--26018	3	19.3	3	76	13	57	32	36	5	25	1.78
25969--26014	12	3.8	12	88	0	74	30	36	6	26	1.82
25968--26014	24	2.0	24	95	0	85	29	36	6	27	1.82
27959--27999	10	4.1	10	83	0	55	29	29	0	41	1.56
28043--28083	18	2.3	18	91	4	66	29	4	2	63	1.28
30288--30359	26	3.0	24	68	27	62	26	6	4	62	1.39
34315--34344	13	2.3	13	94	0	51	36	3	3	56	1.32
34685--34773	32	2.8	32	81	1	99	17	16	32	32	1.93
34750--34852	46	2.2	45	86	5	143	20	15	23	40	1.90
34754--34898	46	3.2	46	82	2	141	21	12	22	44	1.85
37182--37406	64	3.5	64	83	4	267	32	20	19	27	1.96
38018--38240	103	2.2	103	97	0	419	25	13	24	37	1.91
38252--38314	23	2.7	23	90	0	90	20	28	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42779--43000	64	3.5	64	77	8	202	32	19	19	28	1.96
43756--43978	103	2.2	103	97	0	419	26	13	24	36	1.92
43990--44052	23	2.7	23	90	0	90	20	28	25	25	1.99
59337--59500	83	2.0	83	85	4	224	40	5	10	43	1.62
60474--60603	63	2.1	63	100	0	260	33	10	12	43	1.77
60919--61008	29	3.1	28	71	9	81	41	2	18	37	1.63
60919--61008	30	3.1	31	73	17	86	41	2	18	37	1.63
63779--63817	18	2.2	18	90	0	60	35	7	12	43	1.72
65118--65150	16	2.0	17	88	5	50	45	12	24	18	1.83

Tables:   1

The End!