genome.fa.s1142.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001142.1 Hibiscus syriacus cultivar Beakdansim tig00002278_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47444

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3035--3097	23	2.7	23	92	0	99	20	26	25	26	1.99
3625--3668	21	2.1	21	91	0	70	27	22	25	25	2.00
4989--5052	2	32.0	2	93	0	110	48	1	1	48	1.20
5447--5494	18	2.7	18	93	0	78	18	37	18	25	1.94
5310--5491	94	1.9	94	80	2	213	25	26	14	32	1.95
8421--8826	20	20.5	20	83	6	468	35	25	18	20	1.95
8440--8826	79	4.9	80	89	4	491	34	26	18	20	1.96
8440--8807	99	3.7	99	86	6	478	34	26	19	20	1.96
11720--12041	19	18.4	19	78	17	369	46	18	21	14	1.83
11751--12063	108	3.0	103	92	5	536	46	17	21	14	1.84
11751--12063	52	6.0	52	91	5	515	46	17	21	14	1.84
12070--12171	19	5.6	19	85	12	151	14	23	17	44	1.86
12277--12313	14	2.6	14	91	0	65	45	21	0	32	1.52
12294--12366	38	1.9	38	97	0	137	53	16	1	28	1.51
14178--14312	19	7.6	19	76	16	137	45	24	19	10	1.81
14234--14290	14	3.7	14	77	20	60	45	24	21	8	1.80
14215--14307	33	2.8	33	98	0	177	47	22	20	9	1.79
14178--14312	52	2.5	54	75	18	131	45	24	19	10	1.81
14308--14436	19	7.3	19	75	17	125	8	17	28	45	1.77
14308--14399	33	2.8	33	93	3	150	7	18	28	45	1.76
14480--14854	93	4.1	93	95	4	699	46	18	12	22	1.83
14480--14854	180	2.0	184	96	3	695	46	18	12	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16557--16645	14	5.7	14	73	24	72	41	23	25	8	1.83
16549--16662	33	3.5	33	93	1	203	44	21	24	9	1.82
16556--16667	19	6.8	18	70	25	79	42	22	25	9	1.84
16679--16733	14	3.6	14	73	21	56	9	27	23	40	1.85
16854--16924	33	2.2	33	92	0	115	47	18	22	11	1.80
17105--17159	22	2.5	22	81	0	74	20	16	40	23	1.91
17305--17498	20	9.6	20	82	5	221	19	19	25	35	1.95
17305--17498	60	3.2	60	83	0	253	19	19	25	35	1.95
17491--17567	21	3.7	20	70	13	57	27	16	23	32	1.96
17553--17604	20	2.6	20	96	0	95	21	13	26	38	1.90
21165--21194	15	2.0	15	100	0	60	66	0	0	33	0.92
22769--22814	14	3.4	14	75	25	53	4	13	6	76	1.14
22770--22827	27	2.2	26	84	3	71	3	13	10	72	1.24
23761--24304	134	4.1	134	86	1	732	31	19	18	30	1.96
24909--25258	45	7.8	45	79	8	306	41	18	17	22	1.90
24908--25216	90	3.4	89	83	4	372	41	18	17	22	1.90
24918--25258	135	2.5	133	82	5	368	41	18	17	22	1.90
25187--26037	38	22.0	38	81	6	922	40	15	18	25	1.90
25187--26037	156	5.5	156	86	2	1033	40	15	18	25	1.90
27874--27952	9	8.4	9	68	13	52	2	22	0	74	0.93
27869--27964	7	13.4	7	71	11	70	2	22	0	75	0.91
27869--27977	27	3.8	28	83	10	105	3	22	0	73	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27882--27977	31	3.3	30	81	11	94	4	22	0	72	1.01
31029--31058	6	5.0	6	91	0	51	53	16	13	16	1.73
34232--34273	14	2.9	14	89	3	66	4	16	7	71	1.26
34930--34989	3	20.0	3	100	0	120	66	0	0	33	0.92
35676--35727	21	2.4	22	83	6	79	11	7	9	71	1.32
42990--43267	43	6.7	43	81	9	317	22	19	20	38	1.94
42990--43267	85	3.3	83	85	7	352	22	19	20	38	1.94
46752--46776	13	1.9	13	100	0	50	36	8	40	16	1.77
47000--47409	36	11.8	35	76	16	263	44	4	7	43	1.51
46972--47328	73	5.0	71	77	13	279	44	4	8	42	1.55
47123--47322	75	2.7	75	81	9	232	47	5	7	40	1.52
47354--47409	29	1.9	29	88	0	85	44	1	3	50	1.29

Tables:   1

The End!