genome.fa.s1143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001143.1 Hibiscus syriacus cultivar Beakdansim tig00002284_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53781

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158--241	3	27.7	3	83	7	89	36	1	0	61	1.04
9643--9698	2	28.0	2	100	0	112	50	0	0	50	1.00
11506--11566	2	30.5	2	100	0	122	49	0	0	50	1.00
12239--12445	43	4.8	43	78	7	206	25	25	17	31	1.97
12240--12445	85	2.4	86	81	5	240	25	25	17	31	1.97
15648--15723	31	2.4	31	82	8	91	38	9	25	27	1.86
18590--18628	7	5.4	7	87	6	60	15	30	25	28	1.96
21107--21222	24	4.8	24	88	6	164	23	17	18	40	1.91
21159--21232	24	3.1	24	86	3	78	21	16	18	43	1.88
22379--22408	15	1.9	16	93	6	53	16	6	10	66	1.41
33150--33220	25	2.8	24	76	14	72	38	4	4	53	1.40
33150--33239	26	3.3	26	79	13	78	40	3	3	53	1.34
33182--33230	25	1.9	26	88	12	75	44	4	0	51	1.20
33474--33542	31	2.2	31	89	0	111	56	10	1	31	1.41
34540--34627	16	5.5	16	79	16	94	75	0	6	18	1.02
34569--34629	4	15.2	4	85	13	81	77	0	3	19	0.91
34667--34720	21	2.8	18	81	15	56	62	3	3	29	1.29
34671--34721	18	2.6	19	79	11	59	62	3	3	29	1.31
34700--34782	29	2.6	33	74	18	84	67	7	2	22	1.27
34912--34952	2	21.0	2	90	5	66	53	0	0	46	1.00
35494--35598	37	2.8	37	86	0	147	29	13	14	42	1.83
36141--36771	105	6.0	105	89	3	898	22	17	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36971--37046	36	2.1	36	87	4	109	42	15	21	21	1.89
36946--37262	103	3.1	104	90	2	498	37	11	20	30	1.89
37165--37239	39	1.9	39	83	5	98	37	13	22	26	1.91
37377--37490	36	3.2	36	72	2	104	43	14	16	24	1.86
37336--37506	72	2.3	72	84	7	202	41	14	18	25	1.88
38610--39146	183	2.9	183	94	0	914	31	20	20	27	1.98
43031--43112	16	5.1	16	73	18	53	73	0	9	17	1.09
43062--43119	4	14.2	4	76	20	50	72	0	8	18	1.10
43117--43153	2	18.5	2	100	0	74	51	0	0	48	1.00
43322--43381	2	30.0	2	100	0	120	50	0	0	50	1.00
43460--43490	2	15.5	2	100	0	62	48	0	0	51	1.00
44341--44369	14	2.1	14	93	6	51	51	6	0	41	1.28
44688--44724	19	1.9	19	88	0	56	35	2	5	56	1.36
44930--44992	6	9.8	6	79	19	65	74	0	3	22	0.96
44930--44992	19	3.3	18	82	15	65	74	0	3	22	0.96
46748--46781	11	3.2	11	87	4	52	61	0	2	35	1.11
49038--49272	94	2.5	95	85	3	298	36	13	10	40	1.78
53171--53229	30	2.0	30	83	6	75	33	1	0	64	1.04
53216--53279	26	2.4	26	75	15	67	57	4	3	34	1.35

Tables:   1

The End!