Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001144.1 Hibiscus syriacus cultivar Beakdansim tig00002286_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55071

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11776--11825
10
5.0
10
78
9
57
84
0
16
0
0.63
11781--11826
6
7.7
6
85
9
67
82
0
17
0
0.67
12925--13334
83
4.9
84
96
2
740
28
13
20
37
1.90
14088--14475
113
3.4
113
95
1
672
37
13
20
28
1.90
14264--14660
206
2.0
199
87
4
571
36
15
18
29
1.91
14377--14553
93
1.9
93
89
0
273
35
18
16
29
1.93
14470--14945
116
4.2
115
83
8
566
38
14
18
28
1.90
15176--15215
3
13.7
3
94
5
73
32
0
0
67
0.91
15173--15211
17
2.3
17
95
0
69
30
0
0
69
0.89
15170--15214
20
2.2
21
96
4
83
31
0
0
68
0.89
15655--15692
18
2.1
18
90
9
60
71
7
21
0
1.11
28538--28598
24
2.5
24
84
5
70
60
11
11
16
1.58
28549--28580
10
3.2
10
90
0
55
62
15
9
12
1.54
33773--33820
3
16.0
3
87
8
71
35
2
0
62
1.07
34678--34723
4
11.5
4
100
0
92
76
0
23
0
0.79
35322--35576
129
2.0
129
93
1
440
35
7
7
49
1.59
38139--38225
43
2.0
44
86
2
122
31
11
22
34
1.90
38445--38486
14
2.9
14
85
7
57
28
14
4
52
1.62
38439--38475
14
2.6
14
86
0
56
27
13
5
54
1.61
40833--40873
11
3.8
11
87
6
57
80
2
17
0
0.82
40835--40877
14
3.0
15
83
10
54
79
2
18
0
0.85
40824--40873
21
2.4
21
83
3
57
82
4
14
0
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40840--40880
14
2.9
14
85
0
55
78
2
19
0
0.87
42535--42622
43
2.0
43
84
0
113
27
31
6
34
1.83
44242--44393
54
2.8
54
79
3
173
38
15
23
23
1.93
44752--44818
22
3.0
22
86
4
91
37
13
14
34
1.86
44759--44835
22
3.5
22
85
3
93
37
10
15
36
1.82
45512--45879
45
8.2
45
95
0
664
22
23
19
33
1.97
46060--46115
3
18.0
3
85
7
76
35
3
0
60
1.14
46062--46110
13
3.8
13
94
2
82
36
4
0
59
1.17
47525--47627
37
2.8
35
72
19
84
26
1
4
66
1.22
47987--48023
2
19.5
2
83
10
51
51
0
0
48
1.00
49958--50041
18
4.8
17
78
9
80
28
27
5
38
1.80
49973--50040
18
3.8
18
90
0
100
30
25
5
38
1.79
49958--50041
36
2.4
36
88
4
118
28
27
5
38
1.80
51170--51269
2
52.5
2
79
13
95
51
3
0
46
1.16
53589--53619
4
7.8
4
100
0
62
25
0
25
48
1.52

Tables:   1

The End!