genome.fa.s1145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001145.1 Hibiscus syriacus cultivar Beakdansim tig00002287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134239

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7581--7636	27	2.1	27	100	0	112	33	26	10	28	1.90
8315--8343	14	2.0	15	93	6	51	62	10	6	20	1.50
17333--17365	10	3.3	10	100	0	66	72	0	9	18	1.10
20531--21162	311	2.0	311	99	0	1255	34	17	25	22	1.96
23227--23295	35	2.0	35	88	0	102	30	14	20	34	1.92
24544--24793	132	1.9	129	90	4	394	37	20	18	23	1.94
26866--26950	38	2.4	34	78	14	107	47	0	0	52	1.00
27033--27102	36	1.9	36	91	0	113	20	37	10	32	1.85
28136--28160	2	12.5	2	100	0	50	0	48	0	52	1.00
29704--29763	2	30.0	2	96	0	111	48	0	0	51	1.00
31272--31312	13	3.1	13	86	6	55	21	2	2	73	1.07
31282--31320	13	2.8	14	88	11	62	25	0	2	71	0.98
31426--31474	25	2.0	25	95	0	89	38	18	16	26	1.91
35097--35158	32	2.0	32	96	3	117	14	14	9	61	1.57
35337--35721	210	1.8	211	79	7	451	30	21	23	24	1.99
38222--38347	22	5.5	21	73	19	85	72	10	14	3	1.24
38221--38345	23	5.3	23	74	21	107	72	11	13	3	1.25
38232--38286	28	2.0	26	82	6	65	72	7	18	1	1.16
39869--39976	38	2.9	35	82	8	117	33	19	12	34	1.90
39899--40065	90	1.8	93	87	6	252	31	17	10	40	1.84
40177--40270	34	2.7	35	80	5	109	29	19	13	37	1.90
40570--40649	40	2.0	40	95	0	142	31	21	11	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41016--41090	35	2.1	36	85	7	100	36	18	10	34	1.86
41363--41416	28	1.9	28	85	7	74	22	16	16	44	1.86
41428--41809	40	8.9	43	70	11	194	25	31	19	23	1.98
41441--41858	83	4.9	83	71	14	280	24	31	19	23	1.98
41428--41809	129	3.0	129	98	0	728	25	31	19	23	1.98
41998--42038	13	3.1	13	86	6	55	21	2	2	73	1.07
42008--42046	13	2.8	14	88	11	62	25	0	2	71	0.98
42152--42200	25	2.0	25	100	0	98	38	20	16	24	1.92
50388--50440	21	2.5	21	79	11	63	32	13	15	39	1.85
51125--51168	20	2.2	20	91	0	70	29	11	18	40	1.85
53073--53158	3	28.7	3	100	0	172	33	0	33	32	1.58
53231--53274	15	2.8	16	93	3	72	9	18	25	47	1.77
54026--54073	21	2.3	21	78	3	62	45	27	0	27	1.54
54169--54242	7	10.6	7	84	11	98	45	28	0	25	1.53
54169--54257	28	3.2	28	87	7	119	44	29	1	24	1.61
54176--54262	14	6.2	14	88	7	81	45	28	1	24	1.60
54246--54300	21	2.6	21	94	0	101	40	32	9	18	1.82
54210--54269	14	4.3	14	76	16	52	45	30	3	21	1.68
56429--56547	31	3.9	31	78	9	113	38	15	7	37	1.76
56952--57025	3	24.7	3	91	0	121	35	2	0	62	1.10
57500--57536	18	2.1	18	89	0	56	72	5	21	0	1.04
57500--57537	19	1.9	19	94	5	67	73	5	21	0	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57502--57535	16	2.1	16	88	5	50	73	5	20	0	1.04
57500--57538	20	2.0	20	94	0	69	74	5	20	0	1.01
58447--58479	17	1.9	17	88	11	50	39	0	3	57	1.14
69839--69902	1	64.0	1	74	0	56	87	0	12	0	0.54
69834--69894	13	4.6	13	86	13	72	85	0	14	0	0.60
69846--69902	11	5.5	10	82	14	71	87	0	12	0	0.54
69839--69903	23	2.8	23	88	11	105	86	0	13	0	0.58
69834--69903	14	5.2	13	84	10	79	84	0	15	0	0.63
70238--70279	19	2.2	20	91	4	68	30	4	11	52	1.59
71044--71524	84	5.7	84	98	0	910	27	13	21	37	1.91
72254--72815	113	5.0	113	94	1	921	37	13	19	29	1.90
73134--73225	3	30.7	3	95	0	157	34	2	0	63	1.07
73702--73740	20	2.0	20	100	0	78	71	5	23	0	1.05
77371--77420	22	2.4	21	83	6	57	50	0	4	46	1.20
77359--77411	22	2.5	22	81	9	65	47	0	7	45	1.31
79668--79722	23	2.3	23	81	3	65	14	27	16	41	1.87
82445--82594	72	2.1	72	96	1	275	20	24	22	33	1.97
90311--90424	34	3.1	38	82	11	146	34	21	19	24	1.96
90411--90797	173	2.2	173	93	2	661	34	15	19	30	1.93
90835--90915	42	1.9	42	100	0	162	27	19	19	33	1.96
90835--90927	42	2.2	42	94	3	161	25	20	21	32	1.98
90982--91207	53	4.3	53	81	6	251	28	19	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93836--93985	72	2.1	72	97	1	284	19	24	22	33	1.97
94279--94339	32	1.9	32	90	3	97	32	8	18	40	1.80
98982--99073	20	4.6	20	93	0	139	25	27	19	28	1.99
99660--99772	20	5.8	20	82	7	97	15	15	22	46	1.83
101100--101172	21	3.7	20	72	15	62	32	41	10	15	1.82
101700--101770	33	2.2	33	84	0	88	47	23	18	9	1.78
101832--101880	20	2.5	20	93	0	80	16	18	26	38	1.91
102391--102508	21	5.6	21	74	0	110	22	35	18	23	1.96
104018--104083	20	3.3	20	80	4	62	43	22	16	16	1.87
104033--104091	20	3.0	20	84	0	73	49	16	20	13	1.80
104154--104323	20	8.8	20	81	7	208	25	16	22	35	1.94
104100--104320	54	4.0	55	75	15	161	23	17	22	36	1.94
104154--104323	40	4.4	40	83	8	235	25	16	22	35	1.94
104090--104323	94	2.5	94	86	2	321	24	17	21	36	1.94
104169--104315	74	2.0	74	93	0	249	23	17	23	36	1.94
104491--104529	12	3.2	12	85	0	51	17	0	25	56	1.41
104494--104528	18	1.9	18	94	0	61	20	0	22	57	1.41
106802--106853	24	2.2	24	82	0	59	36	17	19	26	1.94
107491--107573	22	3.8	22	96	1	150	26	12	38	22	1.89
107706--107772	20	3.3	20	95	0	116	26	17	26	28	1.98
107706--107825	40	3.0	40	75	6	116	30	19	20	30	1.97
107847--107892	19	2.4	19	88	3	65	23	17	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107856--107894	19	2.1	19	95	0	69	23	15	28	33	1.95
108806--108837	15	2.1	16	94	5	57	46	12	0	40	1.42
109285--109334	17	2.8	18	76	11	50	14	14	10	62	1.55
109321--109396	17	4.5	17	76	3	64	22	11	5	60	1.51
112607--112768	86	1.9	86	89	5	256	44	4	17	33	1.70
113841--113883	20	2.2	19	88	12	61	25	20	11	41	1.86
118863--119024	80	2.0	80	92	2	272	37	19	7	35	1.80
123101--123152	18	2.9	18	85	0	68	32	30	21	15	1.94
124008--124063	22	2.6	22	80	8	62	23	25	16	35	1.94

Tables:   1

The End!