genome.fa.s1146.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001146.1 Hibiscus syriacus cultivar Beakdansim tig00002288_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103932

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3311--3340	15	1.9	16	93	6	53	13	33	13	40	1.83
5664--5747	43	2.0	42	85	2	114	33	16	2	47	1.60
6256--6297	6	6.8	6	86	8	50	4	19	0	76	0.96
7754--7809	21	2.8	21	81	5	71	25	17	25	32	1.97
7754--7830	41	1.9	41	89	2	120	23	16	25	33	1.96
9311--9343	2	17.0	2	93	6	59	48	0	0	51	1.00
11377--11435	3	19.7	3	100	0	118	66	0	0	33	0.92
12406--12439	3	11.3	3	93	0	59	35	0	2	61	1.11
13898--13925	2	14.0	2	100	0	56	50	0	0	50	1.00
16256--16312	7	8.1	7	84	0	60	47	31	0	21	1.51
16261--16323	14	4.5	14	80	11	67	47	33	0	19	1.49
16256--16323	21	3.2	20	77	8	64	47	33	0	19	1.50
16261--16323	28	2.2	28	86	5	83	47	33	0	19	1.49
17151--17203	11	4.6	11	75	9	52	22	26	22	28	1.99
17213--17242	16	1.9	15	93	6	51	13	20	26	40	1.89
24702--24726	3	8.3	3	100	0	50	68	0	32	0	0.90
25202--25267	8	7.6	9	84	11	61	83	0	13	3	0.76
25212--25280	8	9.3	7	76	20	61	81	1	14	2	0.88
25213--25267	15	3.6	15	85	9	76	83	0	14	1	0.73
25202--25276	31	2.4	31	86	8	98	81	1	13	4	0.90
25213--25280	13	5.6	13	73	19	58	80	1	14	2	0.89
25202--25281	23	3.4	24	80	16	87	80	1	13	5	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27187--27244	21	2.8	20	74	5	62	24	22	24	29	1.99
27059--27214	42	3.7	42	67	10	104	26	23	19	30	1.98
28447--28488	15	2.8	15	96	0	75	52	2	4	40	1.35
29033--29082	2	25.0	2	100	0	100	50	0	0	50	1.00
30638--31161	116	4.5	117	76	9	362	26	20	15	38	1.92
33025--33057	17	2.0	17	94	5	59	18	3	6	72	1.18
34253--34302	23	2.0	26	85	11	70	46	2	0	52	1.12
36493--36546	14	3.8	14	82	4	63	24	14	9	51	1.71
42047--42311	83	3.2	83	95	1	460	27	13	21	36	1.92
44976--45049	22	3.4	22	90	0	112	36	12	12	39	1.80
45467--46233	112	6.8	112	88	1	975	37	13	19	29	1.90
45971--46546	308	1.9	309	81	10	701	38	14	19	27	1.91
47125--47157	17	2.0	17	94	5	59	18	3	6	72	1.18
50888--51107	119	1.8	119	84	3	300	41	11	11	35	1.77
53541--53593	21	2.6	21	82	11	58	30	0	1	67	1.01
53541--53595	11	5.5	10	71	16	51	30	0	1	67	1.01
53980--54028	25	2.0	24	84	4	62	42	6	6	44	1.54
55579--55725	11	12.6	11	76	9	123	27	19	23	29	1.98
55657--55715	13	4.8	13	73	12	52	27	23	18	30	1.98
55632--55723	36	2.5	38	84	7	111	28	19	20	31	1.97
55752--55812	31	2.0	31	90	0	95	22	14	19	42	1.88
60636--60668	16	2.1	16	100	0	66	24	6	54	15	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65774--65827	22	2.5	22	75	0	63	22	20	20	37	1.95
70972--71170	32	6.3	32	84	5	237	26	17	20	36	1.94
70971--71170	96	2.1	93	84	8	269	26	17	21	36	1.94
71894--71927	12	2.8	12	90	0	50	23	26	14	35	1.94
74437--74480	12	3.8	12	91	5	65	27	25	27	20	1.99
83088--83968	440	2.0	440	99	0	1735	32	24	19	23	1.98
86727--86911	29	6.3	29	80	9	182	39	19	5	35	1.75
86727--86911	58	3.2	58	81	8	207	39	19	5	35	1.75
86929--86977	17	2.8	18	93	3	82	12	22	44	20	1.84
91931--91955	13	1.9	13	100	0	50	68	0	0	32	0.90
93267--93599	36	9.2	37	80	12	320	43	6	4	44	1.51
93524--93648	62	2.0	64	87	6	184	46	7	4	42	1.50
93499--93687	98	1.9	101	82	11	239	43	8	4	42	1.57
93560--93613	26	2.0	27	89	3	83	46	5	5	42	1.50
93596--93716	37	3.3	35	68	16	84	42	12	3	41	1.59
94347--95174	84	10.0	83	78	4	836	25	19	24	30	1.98
94309--95174	164	5.2	162	82	5	812	25	20	24	30	1.98
94360--95174	413	2.0	412	88	0	1227	25	20	24	29	1.99
99179--99204	3	8.7	3	100	0	52	65	0	0	34	0.93
99243--99296	23	2.2	26	87	9	78	68	7	5	18	1.33
99364--99404	11	3.4	12	78	21	50	80	2	0	17	0.82
100482--100555	30	2.4	30	80	8	78	48	6	1	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100577--100924	38	9.2	37	80	10	327	43	7	4	44	1.52
100581--100924	78	4.6	75	79	10	325	43	7	4	44	1.52
100546--100904	36	9.8	35	75	17	220	43	7	4	44	1.52
100813--100872	11	5.3	11	75	15	50	46	8	1	43	1.43
101149--101173	13	1.9	13	100	0	50	16	40	8	36	1.77
103549--103593	24	1.9	23	81	4	54	28	15	24	31	1.96

Tables:   1

The End!