genome.fa.s1147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001147.1 Hibiscus syriacus cultivar Beakdansim tig00002289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85416

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1313--1344	2	16.0	2	100	0	64	50	0	0	50	1.00
2397--2478	32	2.6	32	83	11	105	29	13	24	32	1.93
3317--3544	85	2.7	84	86	2	330	36	19	18	25	1.94
3398--3884	259	1.9	259	84	0	661	33	19	20	27	1.96
4326--4384	25	2.3	26	91	5	102	33	50	0	15	1.44
5696--5728	5	6.8	5	86	6	50	18	3	0	78	0.87
5700--5726	14	1.9	14	100	0	54	22	3	0	74	0.98
6395--6481	44	2.0	44	86	4	122	34	21	20	22	1.97
10071--10176	48	2.2	49	84	3	135	49	17	13	19	1.80
10071--10174	24	4.3	24	78	7	104	49	18	12	20	1.79
11987--12028	17	2.5	17	88	7	59	26	21	33	19	1.97
15545--15664	23	5.2	23	85	0	123	56	10	18	15	1.66
20334--20371	3	13.0	3	86	5	51	68	2	26	2	1.16
23274--23407	61	2.2	61	91	1	216	34	10	20	35	1.87
28178--28264	26	3.3	24	80	16	86	42	2	0	55	1.12
28189--28266	24	3.1	24	81	5	75	42	2	0	55	1.13
28503--28561	31	1.9	31	90	10	95	59	8	5	27	1.48
29234--29315	42	2.0	42	97	0	155	18	13	19	48	1.80
29544--29599	29	2.0	28	82	10	69	48	1	0	50	1.11
29749--29821	23	3.1	23	82	5	76	52	2	0	45	1.15
29919--29996	22	3.6	21	76	8	66	56	0	2	41	1.13
30158--30216	14	4.1	14	76	4	55	33	18	5	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35421--35510	45	2.0	45	95	0	162	26	6	27	38	1.81
38108--38144	18	2.1	18	89	0	56	59	0	0	40	0.97
39298--39368	35	2.0	36	94	2	126	23	21	23	30	1.99
41099--41152	24	2.2	24	83	0	63	35	20	18	25	1.95
41189--41246	23	2.5	23	83	5	73	34	22	20	22	1.97
41415--41475	27	2.2	27	82	8	70	40	22	4	31	1.75
41410--41479	15	5.0	15	77	16	55	41	22	5	30	1.77
41437--41479	13	3.2	13	81	15	52	41	23	4	30	1.74
43393--43422	2	15.0	2	100	0	60	50	0	0	50	1.00
43430--43454	2	12.5	2	100	0	50	48	0	52	0	1.00
50018--50080	18	3.8	16	76	17	65	77	7	12	1	1.05
50039--50102	22	3.0	21	82	13	69	75	9	14	1	1.12
50017--50087	36	2.0	36	91	0	115	76	9	11	2	1.13
51143--51178	18	2.0	18	94	0	63	16	8	33	41	1.78
51668--51741	36	2.0	38	89	5	116	25	22	14	36	1.93
51915--51986	37	1.9	37	82	0	90	27	20	11	40	1.87
64465--64924	106	4.3	106	88	0	641	35	24	17	21	1.95
67249--67299	18	2.9	18	73	23	54	50	1	0	47	1.12
67314--67357	22	2.0	22	90	0	70	47	2	0	50	1.13
67474--67542	19	3.6	19	67	21	54	46	1	1	50	1.19
71541--71580	15	2.7	15	88	7	55	62	10	7	20	1.50
73210--73249	19	2.0	20	85	4	55	22	47	5	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75612--75647	2	18.5	2	94	5	65	52	0	0	47	1.00
83381--83712	158	2.1	159	84	5	440	51	7	14	27	1.68

Tables:   1

The End!