Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001148.1 Hibiscus syriacus cultivar Beakdansim tig00002290_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95946

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3788--3874
25
3.4
26
81
7
90
20
25
21
32
1.98
3828--3884
25
2.3
25
93
0
96
31
22
15
29
1.95
3947--3999
3
17.3
3
81
11
63
62
0
5
32
1.19
3954--3997
11
3.9
11
85
14
63
63
0
4
31
1.14
3956--4010
22
2.5
22
88
8
76
58
1
5
34
1.32
3938--4008
22
3.0
23
84
12
74
57
1
7
33
1.34
3939--3999
14
4.5
14
74
15
65
60
0
4
34
1.18
4751--4816
29
2.3
29
92
2
107
54
7
3
34
1.44
7840--7885
20
2.3
21
81
11
60
39
21
2
36
1.66
11296--11369
24
3.2
24
81
9
91
25
4
20
50
1.66
38367--38485
39
3.1
39
76
12
111
47
0
14
36
1.50
39593--39618
12
2.2
12
100
0
52
42
0
0
57
0.98
43026--43100
3
25.0
3
78
10
73
57
1
4
37
1.26
43039--43100
14
4.6
14
79
15
69
58
0
3
38
1.15
43026--43099
11
6.7
11
76
14
73
56
1
4
37
1.27
43026--43106
13
6.3
14
68
17
59
56
1
4
37
1.29
43370--44320
55
17.5
55
87
2
1233
29
24
14
31
1.95
44672--44803
37
3.6
37
88
2
185
25
15
22
36
1.94
51841--51912
6
12.0
6
93
0
117
47
15
19
18
1.83
56184--56250
3
22.3
3
79
11
66
56
0
4
38
1.19
56178--56244
13
5.4
13
77
13
61
56
0
5
37
1.24
56184--56246
19
3.4
18
81
14
76
57
0
4
38
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56186--56250
20
3.2
20
77
16
64
56
0
4
38
1.20
56184--56269
14
5.9
14
74
14
57
54
0
3
41
1.17
56205--56269
31
2.1
31
88
2
96
52
0
3
44
1.16
57846--57884
20
2.0
20
94
0
69
43
10
28
17
1.82
58088--58141
12
4.2
12
75
13
54
14
3
5
75
1.12
59806--60201
83
4.8
82
80
3
409
31
14
17
36
1.91
59847--60223
166
2.3
166
84
2
481
31
15
16
36
1.91
63674--64593
462
2.0
459
96
0
1705
20
22
20
36
1.95
71770--72173
114
3.5
114
87
2
553
39
14
7
38
1.74
72829--72880
25
2.1
25
88
0
77
25
1
13
59
1.44
73255--73300
17
2.6
17
89
3
65
47
4
0
47
1.21
76297--76331
17
2.0
18
88
5
54
48
0
22
28
1.51
77582--77614
2
17.0
2
93
6
59
48
0
0
51
1.00
78226--78277
7
7.4
7
97
0
95
59
0
1
38
1.08
78496--78585
29
3.1
29
84
6
121
36
7
24
31
1.84
78512--78582
28
2.5
28
90
2
106
39
8
16
35
1.79
79245--79301
21
2.8
20
76
12
62
31
1
3
63
1.22
80871--80901
16
1.9
16
93
0
53
32
6
12
48
1.67
82264--82690
216
2.0
208
93
5
730
30
14
17
37
1.90
83371--83503
65
2.0
65
88
2
196
18
6
19
55
1.64
90258--90404
46
3.2
46
88
0
222
25
11
22
40
1.87
91442--91515
31
2.4
31
86
0
94
44
21
5
28
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91617--91660
24
1.9
22
86
9
61
34
20
27
18
1.96
91624--91671
24
2.0
24
84
8
62
35
20
25
18
1.95
91660--91752
23
4.0
23
74
0
69
40
25
16
17
1.89
92718--92754
19
2.0
20
89
10
60
43
32
0
24
1.55

Tables:   1

The End!