genome.fa.s1149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001149.1 Hibiscus syriacus cultivar Beakdansim tig00002291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103071

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385--447	32	2.0	32	84	6	83	17	15	28	38	1.91
441--564	46	2.7	46	86	1	151	18	16	22	42	1.88
1070--1112	3	14.3	3	90	9	70	67	0	0	32	0.91
1193--1273	16	5.2	16	72	14	71	6	11	33	49	1.63
6978--7028	23	2.3	22	86	6	68	31	29	13	25	1.94
7680--7730	22	2.4	22	87	6	70	25	31	11	31	1.92
12069--12101	16	2.1	16	88	5	50	51	3	0	45	1.16
13376--13409	17	1.9	18	88	5	52	44	0	5	50	1.26
28580--28622	2	21.5	2	100	0	86	51	0	0	48	1.00
28687--28715	2	14.5	2	100	0	58	51	0	0	48	1.00
29125--29229	37	2.8	37	83	0	138	31	12	15	40	1.84
29902--31382	106	14.0	106	89	1	2161	23	18	24	33	1.97
31756--31792	18	2.0	19	94	5	67	43	32	5	18	1.73
32210--32284	22	3.4	22	94	0	132	21	13	28	37	1.91
32890--32962	9	7.9	9	74	19	62	1	13	2	82	0.85
32903--32962	17	3.5	17	80	10	68	0	15	1	83	0.73
37656--37686	2	15.5	2	100	0	62	51	0	0	48	1.00
38166--38254	37	2.4	37	88	0	124	32	7	15	43	1.76
42580--43194	257	2.4	254	91	4	954	26	12	20	41	1.87
43564--43609	18	2.6	17	83	6	65	28	26	13	32	1.93
47606--47643	15	2.5	15	83	8	51	55	18	0	26	1.43
50745--50778	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52941--53000	18	3.1	19	71	19	61	50	1	3	45	1.28
52941--53001	21	3.0	21	75	15	67	50	1	3	44	1.28
52997--53063	16	4.3	16	83	16	88	35	8	0	55	1.32
53018--53063	9	5.4	9	78	21	55	34	8	0	56	1.30
53022--53063	18	2.4	18	92	7	70	33	9	0	57	1.31
53177--53222	24	1.9	24	82	8	58	50	2	13	34	1.53
53568--53627	14	4.2	14	74	17	52	43	11	1	43	1.51
53568--53650	44	1.9	43	85	2	112	40	8	3	46	1.51
54079--54121	12	3.6	12	77	0	50	48	16	0	34	1.46
54651--56284	2	828.0	2	62	23	241	48	3	4	43	1.42
54673--55573	13	68.8	13	65	24	95	52	2	6	38	1.41
54814--55160	167	2.1	166	81	10	397	51	2	6	40	1.39
54978--55256	134	2.0	143	87	12	411	53	2	5	37	1.38
55293--55457	87	1.8	94	84	8	236	55	4	6	33	1.46
55266--55468	57	3.7	57	75	18	150	55	4	6	33	1.46
55371--55464	49	1.9	49	89	2	145	56	4	4	35	1.38
55572--55800	7	33.6	7	72	18	66	37	7	2	53	1.41
55570--55863	23	11.9	27	69	24	129	38	5	2	53	1.38
55586--55853	148	1.9	145	84	12	367	39	5	1	52	1.37
55855--56283	11	39.8	11	65	19	86	46	3	3	45	1.39
55858--56283	63	6.6	65	74	16	186	46	3	3	45	1.39
55829--56024	109	1.8	105	82	9	252	44	2	4	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56127--56235	13	8.4	13	72	18	75	47	2	2	46	1.31
56049--56201	63	2.4	63	91	4	238	49	3	3	43	1.37
56143--56201	15	3.9	15	74	12	50	52	3	1	42	1.28
59785--59850	29	2.2	29	83	2	78	42	6	9	42	1.61
59931--59963	12	2.9	12	91	8	52	45	6	6	42	1.53
59815--60019	38	5.2	38	77	13	200	45	3	5	44	1.46
59999--60029	2	16.0	2	93	6	55	51	0	0	48	1.00
59915--60068	50	3.1	49	79	10	145	47	4	4	43	1.44
60015--60146	42	3.2	41	81	10	139	46	6	5	42	1.51
61261--61285	13	1.9	13	100	0	50	20	0	0	80	0.72
67626--68287	85	7.8	85	85	1	851	35	20	17	25	1.95
69077--69352	38	6.9	42	78	17	281	45	3	5	45	1.45
69112--69443	38	8.7	36	75	18	264	45	3	5	45	1.44
69112--69380	39	7.0	37	76	16	246	46	3	4	45	1.39
68995--69352	112	3.1	114	80	12	342	44	3	5	45	1.46
68995--69358	121	3.1	113	80	13	343	44	3	5	45	1.45
69036--69406	193	1.9	190	81	12	436	45	4	5	44	1.47
69424--69471	19	2.6	18	80	16	53	43	0	4	52	1.20
69461--69517	27	2.1	27	81	12	64	31	1	0	66	1.02
69468--69508	22	2.0	19	86	13	55	26	2	0	70	0.99
70659--70697	8	4.8	8	90	6	60	17	5	0	76	0.96
70757--70782	7	3.7	7	100	0	52	0	26	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77827--78080	127	2.0	127	98	0	490	29	26	8	36	1.85
95751--95794	21	2.0	21	86	8	61	63	11	0	25	1.27
102004--102054	19	2.7	19	84	0	66	19	21	33	25	1.97
102053--102123	22	3.2	21	84	9	97	18	46	21	14	1.83
102125--102227	29	3.6	29	90	1	154	35	5	21	36	1.78

Tables:   1

The End!