Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000115.1 Hibiscus syriacus cultivar Beakdansim tig00000210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67425

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4913--4978
23
2.9
24
84
8
77
37
7
9
45
1.64
4929--4989
23
2.7
24
82
12
76
39
8
8
44
1.64
4912--4989
21
3.6
22
75
17
74
41
6
8
43
1.62
6712--6739
2
14.0
2
100
0
56
50
0
0
50
1.00
13330--13395
22
3.0
22
84
0
96
56
10
19
13
1.67
14435--14790
132
2.7
132
84
2
455
41
16
9
32
1.81
16895--17059
3
53.3
3
79
8
152
56
3
2
37
1.30
16979--17051
19
3.8
19
77
12
69
53
5
2
38
1.39
17234--17809
134
4.3
134
84
1
724
29
14
21
34
1.93
19052--19143
10
9.6
9
70
20
62
5
14
1
79
0.96
19052--19143
21
4.3
20
70
18
60
5
14
1
79
0.96
19055--19144
17
5.4
17
72
25
66
5
15
1
77
1.00
19082--19166
7
13.0
7
73
20
60
9
15
1
74
1.13
19049--19119
27
2.6
27
79
18
76
7
15
1
76
1.07
19049--19151
39
2.7
39
82
11
108
6
15
1
75
1.10
19054--19161
53
2.0
51
81
13
121
7
14
1
75
1.09
19081--19143
11
5.2
11
74
20
54
6
12
0
80
0.88
20896--20959
23
2.8
23
77
13
78
29
26
23
20
1.99
20975--21295
103
3.1
103
97
0
615
36
24
13
24
1.92
21777--21814
20
1.9
20
88
0
58
10
31
34
23
1.89
21842--21884
21
2.0
21
90
0
68
16
23
27
32
1.96
27919--27982
23
2.8
22
85
4
83
26
26
26
20
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27998--28318
103
3.1
103
91
1
545
38
24
12
25
1.90
28866--28905
21
1.9
21
89
0
62
17
20
30
32
1.95
31553--31790
127
1.9
127
80
9
279
39
8
7
44
1.63
32273--32330
28
2.1
27
84
6
73
32
5
1
60
1.29
33597--33660
30
2.1
30
88
0
92
40
14
26
18
1.89
34495--34550
2
28.0
2
100
0
112
50
0
0
50
1.00
34828--34899
8
9.5
8
85
8
80
79
0
20
0
0.74
34828--34891
7
8.7
7
83
8
74
78
0
21
0
0.76
34828--34899
15
4.8
15
82
3
83
79
0
20
0
0.74
34828--34899
7
9.7
7
80
8
63
79
0
20
0
0.74
37667--37790
31
3.9
32
79
11
139
30
19
19
30
1.96
41883--41954
30
2.4
30
85
0
90
30
26
22
20
1.98
41941--42064
31
4.0
31
80
9
144
30
20
19
29
1.97
44633--44806
75
2.3
75
95
2
305
31
16
22
29
1.96
46021--46078
22
2.6
22
88
0
89
32
18
12
36
1.88
46739--46911
73
2.4
73
93
1
285
27
20
21
30
1.98
46967--47400
123
3.6
114
78
11
360
38
15
20
25
1.91
47080--47400
124
2.6
123
86
3
423
39
14
20
25
1.90
47319--47674
139
2.6
139
83
2
439
41
13
17
27
1.87
49034--49106
2
36.5
2
100
0
146
49
0
0
50
1.00
58189--58234
19
2.3
21
82
14
53
69
19
2
8
1.25
58932--59298
129
2.8
131
85
3
483
41
16
9
32
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60270--60333
20
3.2
20
81
0
74
32
14
15
37
1.87
62558--62620
18
3.5
18
97
0
108
19
17
33
30
1.95
64917--64965
23
2.1
23
85
7
64
57
12
2
28
1.46

Tables:   1

The End!