genome.fa.s1150.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001150.1 Hibiscus syriacus cultivar Beakdansim tig00002292_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83546

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7569--7690	9	14.2	8	76	19	63	59	0	0	39	1.03
7569--7634	25	2.5	26	78	9	64	62	0	1	36	1.05
7568--7674	33	3.2	33	92	5	171	60	0	0	38	1.03
7660--7688	2	14.5	2	100	0	58	51	0	0	48	1.00
8315--8362	21	2.3	21	100	0	96	37	14	18	29	1.91
11284--11346	30	2.1	30	84	0	81	41	6	14	38	1.71
24800--24934	25	5.3	25	72	20	75	43	2	0	53	1.18
24800--24876	25	3.0	25	81	12	86	44	3	0	51	1.19
24861--24927	23	2.9	23	95	2	116	44	0	0	55	0.99
24962--25059	30	3.3	30	74	17	105	54	1	3	41	1.23
24936--25060	59	2.1	58	81	12	148	53	0	4	41	1.25
25083--25152	26	2.8	26	81	12	85	54	0	1	44	1.09
25078--25185	50	2.2	49	81	8	121	51	2	0	44	1.22
25078--25159	26	3.3	25	75	18	75	54	1	1	42	1.15
25094--25186	26	3.7	24	78	11	89	52	2	1	44	1.20
26264--26341	35	2.2	36	83	4	95	42	10	8	38	1.70
26323--26420	20	4.9	20	71	20	80	44	6	4	44	1.47
26295--26432	57	2.4	57	81	7	172	43	7	5	42	1.58
26339--26378	15	2.8	15	82	17	50	50	5	2	42	1.37
26427--26517	21	4.3	20	71	16	67	38	6	7	47	1.58
26442--26544	22	4.8	21	77	11	84	36	5	8	48	1.58
26526--26819	15	18.5	15	65	21	70	43	4	2	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26538--26673	65	2.2	61	84	9	168	41	5	2	50	1.40
26491--26728	131	1.8	132	80	8	288	42	5	3	48	1.42
26490--26764	131	2.1	131	77	12	278	42	5	3	48	1.41
26781--26823	12	3.2	12	77	22	50	48	0	0	51	1.00
26750--26823	28	2.5	30	89	4	107	45	0	0	54	1.00
26750--26821	15	4.9	15	80	13	87	44	0	0	55	0.99
26750--26833	28	2.9	27	82	10	96	45	0	1	53	1.08
28619--28645	7	3.9	7	100	0	54	0	25	14	59	1.36
29425--29484	23	2.7	23	86	2	77	23	13	28	35	1.92
30036--30069	14	2.6	13	86	13	52	61	0	2	35	1.11
30092--30130	14	2.7	14	88	11	53	56	5	2	35	1.35
30115--30159	19	2.4	19	85	3	56	62	0	6	31	1.21
30163--30215	27	2.0	26	82	10	63	49	3	1	45	1.31
30297--30335	16	2.4	16	91	0	60	33	17	28	20	1.96
31146--31197	22	2.4	20	78	15	50	38	1	1	57	1.21
34059--34097	2	20.0	2	84	5	53	43	5	0	51	1.24
35007--35032	3	8.7	3	100	0	52	65	0	34	0	0.93
35042--35078	5	7.8	5	90	3	51	2	13	0	83	0.74
42028--42061	16	2.1	17	88	5	52	35	0	0	64	0.94
46188--46234	2	23.5	2	100	0	94	51	0	48	0	1.00
48156--48212	28	2.0	28	96	0	105	14	29	7	49	1.69
49834--49867	5	6.8	5	93	0	59	2	38	0	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50501--50607	19	5.5	19	72	15	67	32	4	0	62	1.16
50521--50594	24	3.1	22	75	17	60	28	5	0	66	1.14
50555--50594	14	2.7	14	84	7	53	32	2	0	65	1.06
50716--50774	19	3.1	19	70	15	50	23	3	0	72	0.99
50892--50925	17	1.9	17	88	5	50	14	8	0	76	1.01
50960--51004	19	2.5	17	82	13	54	20	2	2	75	1.01
52911--52961	27	1.9	26	84	11	68	29	15	5	49	1.68
55222--55480	110	2.4	108	81	3	299	33	21	20	24	1.97
56780--56849	21	3.4	20	72	18	63	27	4	0	68	1.08
56792--56857	21	3.0	22	78	8	64	25	6	0	68	1.13
56821--56901	16	5.2	15	84	8	83	40	2	0	56	1.12
56844--56902	2	30.0	2	88	10	86	45	3	0	50	1.18
56934--56996	18	3.5	18	72	8	65	25	6	1	66	1.24
56934--57052	36	3.3	36	77	12	122	26	4	0	68	1.14
57076--57148	36	2.1	35	86	2	101	26	2	5	65	1.27
57176--57210	18	2.0	18	88	5	54	14	14	0	71	1.15
57269--57298	12	2.6	12	94	5	53	20	0	0	80	0.72
57262--57332	9	7.3	9	73	14	52	16	2	4	76	1.07
57284--57332	19	2.5	19	87	9	64	12	4	6	77	1.09
57798--57879	40	2.0	40	100	0	164	39	9	23	28	1.86
67323--67530	95	2.2	94	84	4	258	39	10	15	34	1.82
69791--69847	3	18.7	3	79	16	55	33	3	0	63	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71598--71653	19	2.8	19	83	5	58	23	3	0	73	0.99
71858--71903	19	2.4	18	82	10	56	56	4	4	34	1.39
72215--72243	14	2.1	14	93	6	51	41	0	6	51	1.28
72497--72601	37	2.8	37	76	0	120	41	11	13	33	1.80
73352--73387	18	1.9	19	88	5	56	30	5	0	63	1.17
73424--73450	2	13.5	2	100	0	54	48	0	0	51	1.00
73450--73492	20	2.1	21	83	12	54	20	6	0	72	1.08
77458--77994	183	2.9	183	96	0	959	27	21	20	30	1.98
79138--79293	72	2.1	77	83	10	202	27	18	13	40	1.88
79167--79261	36	2.6	36	74	0	100	24	16	15	43	1.87
79171--79343	73	2.4	72	80	8	165	27	17	15	39	1.90
79400--79474	39	1.9	39	83	5	98	26	22	13	37	1.91
79377--79690	101	3.1	102	88	2	463	30	20	11	37	1.88
79590--79665	36	2.1	36	87	4	109	21	21	15	42	1.89
79865--80494	209	3.0	209	88	3	878	33	25	17	22	1.96
79865--80494	105	6.0	104	88	4	860	33	25	17	22	1.96
81034--81134	37	2.8	37	86	1	123	42	13	14	28	1.85
81867--81902	18	1.9	19	88	5	56	30	5	0	63	1.17
81955--82027	8	9.1	8	79	10	51	16	5	0	78	0.94
81967--82000	11	3.0	11	86	4	50	14	0	0	85	0.60
81969--82020	19	2.8	18	80	8	59	15	7	0	76	0.99
81983--82028	16	2.9	16	80	6	58	15	10	0	73	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83287--83364	25	3.1	24	73	15	68	48	3	2	44	1.34

Tables:   1

The End!