Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001151.1 Hibiscus syriacus cultivar Beakdansim tig00002293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61565

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1702--1747
24
1.9
24
90
0
74
34
28
19
17
1.94
3247--3857
54
11.3
54
83
7
704
31
17
16
33
1.93
3195--3857
108
6.1
108
83
3
791
31
18
16
33
1.93
3424--3507
26
3.2
26
65
18
73
35
11
16
35
1.86
3195--3857
162
4.1
161
83
3
793
31
18
16
33
1.93
7156--7319
22
7.5
22
73
0
157
18
17
4
60
1.52
7151--7322
44
3.9
44
99
0
335
18
17
4
59
1.52
12522--12599
35
2.2
35
82
13
97
43
3
10
42
1.56
12585--12835
37
6.8
37
77
10
235
41
3
10
43
1.58
12623--12836
74
2.9
73
84
8
265
41
3
10
44
1.56
12623--12836
73
2.9
71
81
11
252
41
3
10
44
1.56
12922--12999
5
16.0
5
77
15
67
20
2
1
75
0.99
12930--12999
32
2.2
32
81
18
85
20
2
1
75
1.00
12945--12999
17
3.4
16
75
12
58
21
3
0
74
0.97
15319--15353
16
2.2
16
94
0
61
20
28
14
37
1.91
15773--15815
20
2.2
20
82
0
50
41
4
6
46
1.51
16947--16986
15
2.7
15
88
0
62
15
60
15
10
1.60
19887--19948
26
2.4
26
100
0
124
50
16
6
27
1.69
24874--24915
2
21.0
2
100
0
84
50
0
0
50
1.00
24967--25027
23
2.6
24
80
15
74
39
6
0
54
1.27
24979--25028
23
2.2
24
85
10
77
40
6
0
54
1.25
24986--25030
23
2.0
22
95
4
81
35
6
0
57
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25048--25151
30
3.5
31
71
6
97
40
7
0
51
1.30
25050--25177
60
2.2
59
85
1
175
43
8
0
47
1.34
25332--25428
35
2.7
37
80
10
105
54
0
5
40
1.23
25481--25551
30
2.4
29
88
11
108
63
1
4
30
1.22
28857--28890
16
2.1
16
94
0
59
32
8
26
32
1.87
29641--29672
15
2.1
16
94
5
57
50
18
25
6
1.70
38032--38081
21
2.4
21
93
0
82
40
16
42
2
1.59
38733--38781
22
2.2
22
85
10
64
14
20
10
55
1.68
38894--38968
25
3.2
25
63
27
65
49
13
1
36
1.50
38877--38968
44
2.1
44
97
0
175
48
11
2
36
1.52
42778--42853
23
3.3
23
72
7
73
19
17
26
36
1.94
43013--43077
31
2.1
31
88
5
96
29
6
20
44
1.75
43017--43085
31
2.2
31
84
5
86
28
5
20
44
1.74
43454--43486
16
2.1
16
94
0
57
45
0
15
39
1.46
49637--49686
20
2.5
20
86
0
73
38
10
22
30
1.86
50447--50535
23
3.9
23
74
0
79
17
17
24
39
1.92
50548--50593
24
1.9
24
86
0
65
19
26
19
34
1.96
50695--50768
31
2.4
31
86
0
103
28
5
21
44
1.74
51156--51188
16
2.1
16
94
0
57
45
0
15
39
1.46
51822--51947
46
2.7
46
91
0
198
45
23
7
23
1.79
51822--51965
46
3.1
47
86
4
195
44
25
9
21
1.81
58681--58809
62
2.0
64
85
5
174
55
20
6
18
1.64

Tables:   1

The End!