Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001152.1 Hibiscus syriacus cultivar Beakdansim tig00002296_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127240

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6240--6272
16
2.1
16
94
0
57
33
6
27
33
1.81
10279--10309
15
2.0
16
93
6
55
32
6
16
45
1.72
15130--15162
17
1.9
17
88
11
50
60
15
15
9
1.58
20150--20237
24
3.7
24
92
0
140
22
20
21
35
1.96
33144--33185
21
2.0
21
100
0
84
23
4
28
42
1.74
33732--33757
2
13.0
2
100
0
52
0
50
0
50
1.00
36604--36635
11
2.9
11
95
0
55
68
0
31
0
0.90
41713--41804
46
2.0
46
100
0
184
30
13
19
36
1.90
52579--52617
13
3.0
13
92
0
69
35
15
33
15
1.89
62255--62325
32
2.2
32
82
0
97
40
11
15
32
1.83
62793--62834
11
3.6
12
81
12
52
35
4
0
59
1.19
72348--72376
15
1.9
15
100
0
58
27
10
20
41
1.85
74973--75088
60
2.0
60
82
5
146
37
17
15
30
1.91
77077--77194
60
2.0
60
81
0
137
33
16
19
30
1.94
78806--78848
18
2.5
17
78
14
52
51
0
2
46
1.13
80469--80507
17
2.3
18
82
13
55
33
0
2
64
1.08
83056--83085
11
2.7
11
94
0
51
30
0
6
63
1.20
89421--89523
52
2.0
52
82
3
127
31
23
5
39
1.78
89741--89886
60
2.4
60
78
10
154
43
3
19
33
1.68
90935--91012
33
2.4
33
85
8
97
38
0
1
60
1.05
92720--92767
21
2.3
21
85
0
60
25
39
12
22
1.89
92771--92864
21
4.5
21
92
5
129
18
35
26
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93378--93474
34
2.9
35
83
7
128
55
4
4
36
1.38
93797--94525
126
5.8
126
98
0
1408
32
18
25
22
1.97
93797--94525
251
2.9
251
98
0
1415
32
18
25
22
1.97
93797--94525
377
1.9
377
98
0
1406
32
18
25
22
1.97
94593--94633
8
5.2
8
82
5
57
36
29
0
34
1.58
100336--100404
3
23.0
3
100
0
138
66
0
33
0
0.92
100652--100712
26
2.3
27
82
5
79
37
3
3
55
1.32
109673--109853
29
6.3
29
89
0
265
48
14
3
34
1.60
109673--109937
58
4.8
58
82
11
349
48
15
3
33
1.60
109810--109899
46
2.0
46
95
0
162
52
13
2
32
1.53
109781--109924
75
1.9
75
92
0
243
50
13
3
32
1.59
109856--109937
29
2.9
28
92
3
128
50
17
2
30
1.59
117620--117738
57
2.1
57
100
0
238
35
16
14
33
1.89
118971--119010
2
20.5
2
89
5
64
45
0
0
55
0.99
121504--121553
20
2.5
20
80
6
57
54
12
0
34
1.38
121727--122651
305
3.0
309
89
3
1414
42
12
11
33
1.79
126117--126277
83
1.9
83
86
2
225
38
13
18
30
1.88

Tables:   1

The End!