Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001154.1 Hibiscus syriacus cultivar Beakdansim tig00002300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107966

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8505--8557
19
2.8
19
86
13
74
49
3
0
47
1.19
8553--8581
15
2.0
15
93
6
51
37
0
0
62
0.96
11943--11991
26
1.9
25
87
4
71
59
2
2
36
1.21
13590--13635
24
1.9
24
86
8
67
41
6
6
45
1.56
17119--17152
6
5.5
6
89
3
50
50
0
32
17
1.47
20414--20461
23
2.1
23
92
0
78
41
2
4
52
1.32
20631--20707
24
3.2
24
73
12
70
41
1
1
55
1.16
21354--21384
16
1.9
16
93
0
53
74
6
0
19
1.03
23143--23216
37
2.0
36
84
2
94
47
1
2
48
1.24
25421--25445
10
2.5
10
100
0
50
16
0
0
84
0.63
25727--25766
3
13.7
3
89
5
64
72
0
0
27
0.85
25731--25766
14
2.5
14
95
4
63
72
0
0
27
0.85
25726--25766
20
2.0
20
95
0
73
73
0
0
26
0.84
26347--26426
41
2.0
41
82
5
99
26
25
22
26
2.00
26231--26625
218
1.8
214
85
3
558
34
17
14
33
1.91
26393--26947
260
2.1
260
88
0
840
33
17
16
31
1.93
26864--27005
42
3.4
42
74
5
153
33
20
18
28
1.96
26855--27030
83
2.1
83
86
0
253
35
20
17
27
1.94
26587--27291
343
2.1
344
86
1
995
34
18
16
30
1.93
29470--29559
5
17.8
5
75
15
78
0
21
1
77
0.83
29485--29560
11
6.7
11
79
11
66
0
19
1
78
0.81
29486--29581
30
3.3
29
78
15
101
2
19
1
77
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29470--29559
40
2.2
40
84
9
112
0
21
1
77
0.83
29466--29582
15
7.5
15
68
19
62
1
22
0
75
0.95
30551--30576
13
2.0
13
100
0
52
46
15
0
38
1.46
32450--32522
30
2.4
30
95
0
128
30
24
20
24
1.99
32508--32572
31
2.1
31
85
0
85
33
23
18
24
1.96
33530--33587
20
2.6
22
89
10
84
25
22
20
31
1.98
33564--33715
64
2.4
63
81
8
182
27
23
15
33
1.95
33576--33737
64
2.5
64
81
8
179
29
24
15
31
1.95
34196--34224
3
9.7
3
100
0
58
65
0
34
0
0.93
43134--43195
14
4.4
14
73
4
52
50
8
0
41
1.32
51651--51701
23
2.2
23
100
0
102
54
0
9
35
1.33
55433--55476
19
2.2
20
84
8
54
61
2
0
36
1.09
59022--59047
11
2.4
11
100
0
52
0
7
0
92
0.39
62314--62367
22
2.5
22
93
0
90
33
33
3
29
1.75
67726--67751
6
4.3
6
100
0
52
69
15
0
15
1.20
67799--67829
2
15.5
2
100
0
62
51
0
0
48
1.00
67921--68001
23
3.4
23
81
11
92
51
3
4
39
1.41
68114--68139
10
2.6
10
100
0
52
76
0
0
23
0.78
80229--80291
22
2.8
22
87
2
81
11
28
15
44
1.81
80251--80292
22
1.9
22
100
0
84
9
28
16
45
1.79
80983--81036
26
2.1
26
100
0
108
40
18
12
27
1.87
82976--83039
3
21.3
3
100
0
128
67
0
32
0
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83578--83639
19
3.5
18
77
12
58
37
3
1
58
1.24
83606--83644
9
4.3
9
87
9
53
38
2
0
58
1.12
84549--84868
156
2.1
156
98
0
622
28
8
5
57
1.52
84915--84986
32
2.3
31
83
9
85
25
12
1
61
1.39
84912--84978
31
2.3
27
75
22
64
26
11
0
61
1.31

Tables:   1

The End!