genome.fa.s1156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001156.1 Hibiscus syriacus cultivar Beakdansim tig00002303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82454

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32--183	77	2.0	78	92	1	252	23	28	15	32	1.95
1455--1774	95	3.5	94	82	9	369	30	31	15	23	1.95
1542--1768	47	4.8	48	70	7	167	30	30	14	24	1.95
5921--6164	90	2.7	90	78	5	224	26	45	10	17	1.80
6238--6284	18	2.6	18	93	0	76	29	48	6	14	1.69
9335--9415	18	4.5	18	80	0	99	18	48	18	14	1.82
9333--9415	36	2.3	36	87	0	121	18	48	18	15	1.82
11496--11546	25	2.0	27	81	14	63	58	0	5	35	1.22
26041--26084	14	3.0	14	81	12	61	15	20	13	50	1.78
26041--26084	16	2.9	16	86	6	65	15	20	13	50	1.78
44316--44389	20	3.7	20	78	3	85	40	20	21	17	1.91
44333--44408	21	3.7	21	80	3	100	40	18	25	15	1.90
44316--44408	41	2.3	41	98	0	177	39	19	23	17	1.92
44394--44471	41	1.9	41	83	0	102	39	20	16	23	1.92
44439--44491	20	2.7	20	93	0	88	28	28	18	24	1.98
44986--45023	20	1.9	20	88	0	58	13	15	21	50	1.78
46339--46383	18	2.5	18	88	0	72	26	44	15	13	1.83
46765--46802	12	3.1	12	82	17	51	0	5	21	73	1.02
46856--46901	20	2.3	20	88	0	65	36	26	21	15	1.93
46911--46968	14	3.9	14	79	16	71	48	24	17	10	1.78
46895--46985	32	2.8	33	93	3	157	48	21	17	12	1.80
47055--47100	20	2.4	19	92	3	74	15	23	26	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49104--49223	19	6.8	19	82	16	161	47	17	20	14	1.82
49075--49223	33	4.4	33	83	8	190	44	19	21	14	1.85
49142--49192	14	3.3	14	76	23	57	47	17	21	13	1.82
49161--49218	14	3.8	14	75	20	53	48	18	20	12	1.80
49075--49224	52	3.0	48	80	14	167	44	19	21	14	1.86
49496--49548	19	3.1	19	71	25	62	15	18	18	47	1.83
50330--50383	24	2.2	24	90	0	81	24	16	20	38	1.92
52867--52925	19	3.4	19	73	22	74	45	18	22	13	1.84
53052--53088	14	2.6	14	91	0	65	45	24	0	29	1.53
54484--54567	42	2.0	42	83	4	107	22	16	38	22	1.93
56593--56691	33	3.0	33	89	1	144	39	26	23	11	1.88
56663--56752	39	2.3	38	92	1	144	47	22	18	11	1.80
56568--56743	19	9.6	19	76	15	165	44	22	21	11	1.85
56748--56792	19	2.4	19	88	0	63	8	15	24	51	1.72
57384--57525	20	6.9	21	70	15	59	18	21	18	42	1.90
57366--57443	41	1.9	41	86	0	111	21	16	21	39	1.92
57347--57440	20	4.7	20	80	2	89	23	18	24	34	1.96
57429--57562	41	3.3	41	100	0	241	17	24	17	40	1.91
57429--57562	20	6.6	20	77	4	133	17	24	17	40	1.91
57409--57562	82	1.9	82	90	5	249	18	24	18	38	1.92
59848--60004	64	2.5	64	82	2	181	31	19	22	26	1.98
61723--61822	35	2.7	35	83	6	110	39	14	15	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62487--62520	16	2.1	16	88	0	50	32	5	0	61	1.20
62501--62551	21	2.4	22	80	3	59	27	3	1	66	1.20
62537--62570	9	3.9	9	88	7	52	41	0	0	58	0.98
67231--67301	21	3.3	21	78	7	63	78	4	12	4	1.03
67910--67960	22	2.3	22	96	0	93	35	27	11	25	1.91
68893--69054	37	4.6	37	70	21	123	29	20	14	35	1.92
68823--69119	102	2.9	102	94	0	513	30	20	12	36	1.90
69004--69184	65	2.8	65	93	0	308	30	20	12	36	1.89
68902--69219	167	1.9	169	92	2	534	29	20	12	36	1.90
69292--69363	37	1.9	37	82	0	90	26	22	11	40	1.87
69714--70576	98	8.3	97	77	12	417	32	25	20	21	1.97
69744--70532	109	7.6	108	78	10	496	33	25	20	20	1.97
71040--71114	35	2.1	37	90	5	118	38	16	16	29	1.90
71797--71834	17	2.3	16	90	4	58	31	5	0	63	1.17
71850--71882	2	16.5	2	100	0	66	48	0	0	51	1.00
76692--76777	38	2.3	38	100	0	172	36	5	27	30	1.80
76987--77044	23	2.5	23	85	0	80	18	25	24	31	1.98
77911--77949	16	2.5	15	83	4	51	56	2	0	41	1.13
79610--79645	16	2.1	18	90	10	58	36	0	8	55	1.30
80004--80077	13	6.2	12	73	14	55	52	0	1	45	1.09
80017--80077	24	2.6	24	89	2	97	54	0	0	45	1.00
80868--80901	16	2.1	16	94	0	59	11	11	26	50	1.73

Tables:   1

The End!