genome.fa.s1157.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001157.1 Hibiscus syriacus cultivar Beakdansim tig00002307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66716

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1557--1667	33	3.4	33	93	2	181	32	31	14	21	1.93
2395--2475	33	2.5	33	91	0	135	33	12	38	16	1.85
5581--5613	15	2.2	15	100	0	66	24	6	21	48	1.72
8703--8856	31	5.0	31	90	4	226	39	24	17	18	1.92
9502--9619	61	1.9	61	85	0	164	26	17	20	35	1.95
10174--10202	3	9.7	3	100	0	58	65	0	34	0	0.93
12790--12833	23	1.9	23	90	9	72	40	13	2	43	1.57
18793--18846	20	2.7	19	75	8	63	33	31	18	16	1.93
18833--18950	20	5.8	20	69	14	62	37	20	20	22	1.95
18896--18948	20	2.7	20	88	5	72	43	22	20	13	1.86
18935--19169	41	5.8	41	86	6	302	37	24	18	20	1.94
18934--19171	20	11.7	20	77	9	232	36	24	18	20	1.95
18915--19169	122	2.1	122	88	4	372	37	24	18	19	1.94
19387--19437	27	2.0	26	84	7	68	41	31	7	19	1.80
19730--19801	20	3.6	19	84	5	90	51	18	16	13	1.77
19730--19818	20	4.4	21	80	9	89	51	20	15	12	1.75
19730--19818	40	2.2	40	78	7	101	51	20	15	12	1.75
19870--19925	14	3.6	14	74	21	58	8	25	23	42	1.82
19822--19945	34	3.7	33	90	3	194	12	22	21	43	1.85
19910--19962	20	2.7	20	82	11	81	13	26	20	39	1.89
21662--22041	94	4.1	94	94	1	638	21	12	18	47	1.81
22129--22207	19	4.6	17	76	21	76	46	21	21	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22145--22225	33	2.5	33	89	0	126	49	22	19	8	1.75
22270--22336	20	3.3	20	93	0	107	20	19	22	37	1.95
22820--22922	21	5.0	20	68	12	66	21	36	18	23	1.95
24281--24316	14	2.6	14	90	0	54	30	0	22	47	1.52
24478--24564	20	4.3	20	88	2	131	18	21	24	35	1.95
24688--24716	9	3.3	9	95	4	51	55	20	0	24	1.44
24776--24859	33	2.5	33	92	1	132	44	19	22	14	1.86
24875--24959	33	2.5	33	88	1	116	15	22	17	44	1.86
24942--25030	20	4.4	20	85	2	117	20	22	22	34	1.96
25018--25044	14	1.9	14	100	0	54	7	22	29	40	1.81
28005--28070	21	3.2	21	89	2	107	30	10	24	34	1.89
30637--30690	24	2.2	24	93	0	90	40	20	18	20	1.91
30637--30704	24	2.8	24	84	0	64	38	20	17	23	1.93
31552--31657	20	5.3	19	85	2	58	22	17	19	39	1.92
31544--31657	40	2.9	39	80	3	104	22	18	20	38	1.93
31654--31699	21	2.2	21	88	0	65	36	17	28	17	1.92
31750--31981	20	11.6	20	80	6	238	19	18	25	36	1.94
31750--32042	40	7.3	40	83	5	324	19	18	25	37	1.94
31990--32042	20	2.7	20	91	5	81	13	18	24	43	1.86
33602--33680	39	2.0	39	92	0	131	26	30	17	25	1.97
35693--35794	34	2.9	36	89	5	163	44	13	13	28	1.82
36186--36228	18	2.5	17	85	7	61	25	4	2	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36287--36311	2	12.5	2	100	0	50	48	0	0	52	1.00
36729--36799	2	36.0	2	97	2	135	49	0	0	50	1.00
40545--40578	16	2.1	16	89	10	52	76	8	14	0	1.01
40567--40645	22	3.6	22	79	16	76	75	8	13	1	1.09
40567--40629	21	3.2	19	79	16	65	77	9	11	1	1.05
41714--41749	18	2.0	18	88	0	54	19	8	30	41	1.81
42229--42510	36	8.0	36	80	8	321	25	19	14	40	1.89
42187--42510	72	4.6	73	77	10	248	26	19	15	38	1.91
42285--42473	102	1.9	102	89	2	299	26	18	13	40	1.88
42249--42573	138	2.4	137	85	2	454	27	20	12	39	1.88
42468--42625	67	2.4	67	85	5	196	32	21	8	37	1.83
42459--42625	65	2.5	65	83	4	192	31	21	8	38	1.83
43246--44011	105	7.3	105	88	2	1051	34	26	16	22	1.95
44546--44647	34	2.9	36	89	5	163	44	13	13	28	1.82
44544--44681	37	3.8	37	84	6	149	43	12	13	31	1.80
45043--45081	18	2.2	17	90	4	60	23	7	2	66	1.30
45144--45184	2	20.5	2	100	0	82	48	0	0	51	1.00
45605--45652	2	24.0	2	95	0	87	47	0	0	52	1.00
51339--51380	22	1.9	22	85	9	59	57	11	2	28	1.47
57830--57886	29	2.0	29	96	0	105	49	3	5	42	1.42
58627--58674	20	2.2	20	82	10	51	60	0	2	37	1.09
60929--61072	71	2.0	70	95	1	261	40	4	31	22	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61482--62077	297	2.0	297	97	1	1117	37	17	18	26	1.93

Tables:   1

The End!