Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001158.1 Hibiscus syriacus cultivar Beakdansim tig00002309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88141
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1853 original size:21 final size:22
Alignment explanation
Indices: 1814--1858 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
1804 CCGGACTTTA
1814 TATATGTCCACGAAGGACCTCG
1 TATATGTCCACGAAGGACCTCG
*
1836 TATATGTCC-CGAATGACCTCG
1 TATATGTCCACGAAGGACCTCG
1857 TA
1 TA
1859 GAACCCTCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (22 bp):
TATATGTCCACGAAGGACCTCG
Found at i:3441 original size:30 final size:28
Alignment explanation
Indices: 3375--3458 Score: 78
Period size: 30 Copynumber: 2.9 Consensus size: 28
3365 TCATTTTATA
* *
3375 TAAAATTTTCTATATAAGTCACTAAACTT
1 TAAAATTTTCTAT-TTAGTCACTAAACTC
**
3404 TTCAATTTATCTACTTTAGTCACTAAACTC
1 TAAAATTT-TCTA-TTTAGTCACTAAACTC
* *
3434 TAAAATTTTATAATTTGGTCACTAA
1 TAAAATTTTCT-ATTTAGTCACTAA
3459 CCCGGTGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
29 19 0.43
30 24 0.55
31 1 0.02
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.43
Consensus pattern (28 bp):
TAAAATTTTCTATTTAGTCACTAAACTC
Found at i:8602 original size:11 final size:12
Alignment explanation
Indices: 8570--8594 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8560 TACTTAATCG
8570 AAATAAAAACAA
1 AAATAAAAACAA
8582 AAATAAAAACAA
1 AAATAAAAACAA
8594 A
1 A
8595 GTAAAAACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AAATAAAAACAA
Found at i:11388 original size:18 final size:19
Alignment explanation
Indices: 11357--11403 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
11347 GCAATGAGAT
11357 ATTTAAAT-AATAAAA-TCA
1 ATTTAAATAAATAAAAGT-A
11375 A-TTAAATAAATAAAAGTA
1 ATTTAAATAAATAAAAGTA
11393 ATTTAAATAAA
1 ATTTAAATAAA
11404 AATAAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.23
18 10 0.38
19 10 0.38
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
ATTTAAATAAATAAAAGTA
Found at i:12917 original size:21 final size:21
Alignment explanation
Indices: 12892--12939 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
12882 ACTTTTTGGG
* * *
12892 AGTTTTGAAACTATGACTCAA
1 AGTTTCGAAACTATAACCCAA
*
12913 AGTTTCGATACTATAACCCAA
1 AGTTTCGAAACTATAACCCAA
12934 AGTTTC
1 AGTTTC
12940 AATACTCTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (21 bp):
AGTTTCGAAACTATAACCCAA
Found at i:12944 original size:21 final size:21
Alignment explanation
Indices: 12901--12945 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
12891 GAGTTTTGAA
* * *
12901 ACTATGACTCAAAGTTTCGAT
1 ACTATAACCCAAAGTTTCAAT
12922 ACTATAACCCAAAGTTTCAAT
1 ACTATAACCCAAAGTTTCAAT
12943 ACT
1 ACT
12946 CTTGAAAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (21 bp):
ACTATAACCCAAAGTTTCAAT
Found at i:24630 original size:2 final size:2
Alignment explanation
Indices: 24582--24615 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
24572 TTTTAAGATA
24582 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24616 TATTAAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25012 original size:16 final size:16
Alignment explanation
Indices: 24988--25018 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24978 ATAGTAATAC
*
24988 TAATGATAAATATATA
1 TAATCATAAATATATA
25004 TAATCATAAATATAT
1 TAATCATAAATATAT
25019 GAAAGTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (16 bp):
TAATCATAAATATATA
Found at i:25067 original size:20 final size:21
Alignment explanation
Indices: 25023--25068 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
25013 ATATATGAAA
*
25023 GTAAAATATGATTAATAAAAT
1 GTAAAATATGAGTAATAAAAT
*
25044 -TAAAATAT-AGTATTAAAAT
1 GTAAAATATGAGTAATAAAAT
25063 GTAAAA
1 GTAAAA
25069 AGTAATAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (21 bp):
GTAAAATATGAGTAATAAAAT
Found at i:26501 original size:3 final size:3
Alignment explanation
Indices: 26493--26571 Score: 63
Period size: 3 Copynumber: 26.7 Consensus size: 3
26483 CTGTAATATG
* * * *
26493 TAA TAA TAA TATT TAT TAA TAA AAA T-A TAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
26538 TTA TAA CAA TTA TAA TAA TTA TAA TAA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26572 GGCAAAAAAT
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
2 4 0.07
3 53 0.90
4 2 0.03
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:27137 original size:124 final size:124
Alignment explanation
Indices: 26889--27556 Score: 766
Period size: 124 Copynumber: 5.6 Consensus size: 124
26879 CAACTTTATA
* * * *
26889 TGTGATAAA-TTAAG-ACAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTC-TCCTTCTTCA
1 TGTGATAAAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
** ** *
26951 GATGAGTTCTTCTCATTATGAACACT-TCTGGAAATGTTGATGTTGATCTATCTCCTTC
66 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTC
* *
27009 TGTGATAAAGTCAAACAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1 TGTGATAAAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
27074 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTC
66 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTC
* *
27133 TGTGA-AAGAGTCATGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
1 TGTGATAA-AGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
* * *
27197 AAATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAATTAATGATGATCTATCTCCTTC
65 AGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTC
* * * * *
27257 TGTGATAGAA-TCATGAAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTT
1 TGTGATA-AAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
* * * *
27321 AGATGAGTTCTTCTTATTATGAACTCTAC-CTGG--AAA-TG-T--TGATCCA--T-C--G
65 AGATGAGTTCTTCTCATTATGAACT-TTCTCTGGAAAAATTGATGCTGATCTATCTCCTTC
* * * *
27370 AGTGATGAATTCAAGCAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1 TGTGATAAAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * *
27435 GATGAGTTCTTCTCATTATGAACTCT-TCTGG---AA---ATGCTGATCCA--T-C--G
66 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTC
** * * *
27482 AATGATGAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1 TGTGATAAAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
27547 GATGAGTTCT
66 GATGAGTTCT
27557 CATTATGATC
Statistics
Matches: 496, Mismatches: 39, Indels: 34
0.87 0.07 0.06
Matches are distributed among these distances:
110 1 0.00
111 2 0.00
112 88 0.18
113 79 0.16
115 1 0.00
116 1 0.00
118 6 0.01
120 10 0.02
121 4 0.01
122 37 0.07
123 36 0.07
124 226 0.46
125 4 0.01
126 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.38
Consensus pattern (124 bp):
TGTGATAAAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTC
Found at i:27539 original size:112 final size:114
Alignment explanation
Indices: 27272--27580 Score: 504
Period size: 112 Copynumber: 2.8 Consensus size: 114
27262 TAGAATCATG
* * *
27272 AAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTTAGATGAGTTCTTCTTA
1 AAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
27337 TTATGAACTCTACCTGGAAATGTTGATCCATCGAGTGATGAATTCAAGC
66 TTATGAACTCTACCTGGAAATGCTGATCCATCGAATGATGAATTCAAGC
27386 -AAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 AAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
27450 TTATGAACTCT-TCTGGAAATGCTGATCCATCGAATGATGAATTCAAGC
66 TTATGAACTCTACCTGGAAATGCTGATCCATCGAATGATGAATTCAAGC
27498 AAAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG---TTCTCA
1 AAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
27559 TTATGATCTCTACCTAGAAATG
66 TTATGAACTCTACCTGGAAATG
27581 TTTTAAGAAA
Statistics
Matches: 184, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
109 16 0.09
110 8 0.04
112 83 0.45
113 77 0.42
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (114 bp):
AAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCTACCTGGAAATGCTGATCCATCGAATGATGAATTCAAGC
Found at i:27717 original size:76 final size:76
Alignment explanation
Indices: 27591--27848 Score: 401
Period size: 76 Copynumber: 3.4 Consensus size: 76
27581 TTTTAAGAAA
* * * * * *
27591 AAACATTC-TGCACTGTAGGGCTTACAGCTGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCC
1 AAACA-TCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGTTCCCG
*
27655 AAGACTTTTTGG
65 AAGGCTTTTTGG
*
27667 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGTTCCCGG
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGTTCCCGA
27732 AGGCTTTTTGG
66 AGGCTTTTTGG
*
27743 AAACATCATGCATTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGTTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGTTCCCGA
*
27808 AGGCTTTTTGA
66 AGGCTTTTTGG
*
27819 AAACATCATGCATTGTAGGACTTACAGATG
1 AAACATCATGCACTGTAGGACTTACAGATG
27849 TGAGAAATAG
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
75 2 0.01
76 168 0.99
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (76 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGTTCCCGA
AGGCTTTTTGG
Found at i:28642 original size:22 final size:22
Alignment explanation
Indices: 28520--28640 Score: 206
Period size: 22 Copynumber: 5.5 Consensus size: 22
28510 AATAAAGCTT
28520 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
28542 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
28564 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
28586 TCATCTTTGAAAACAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
28608 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
28630 TCATCTTTGAA
1 TCATCTTTGAA
28641 GAATGTAGAT
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 92 1.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:29159 original size:46 final size:46
Alignment explanation
Indices: 29075--29163 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
29065 CTAGTAAAAC
* * *
29075 ATTTGACAACACATTCATCCTTTCCTGTAGCTTCTGCACAGATGCT
1 ATTTGACAACACATTCATCATTTCATGTAGCTTATGCACAGATGCT
*
29121 ATTTTACAACACATTCATCATTTCATGT-GACTTATGCACAGAT
1 ATTTGACAACACATTCATCATTTCATGTAG-CTTATGCACAGAT
29164 TTCTAGTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 1 0.03
46 37 0.97
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (46 bp):
ATTTGACAACACATTCATCATTTCATGTAGCTTATGCACAGATGCT
Found at i:33566 original size:7 final size:7
Alignment explanation
Indices: 33556--33589 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
33546 CAATTTTCCT
33556 TTTTTTC
1 TTTTTTC
33563 TTTTTTC
1 TTTTTTC
33570 -TTTTTC
1 TTTTTTC
33576 TTTTTTTC
1 -TTTTTTC
33584 TTTTTT
1 TTTTTT
33590 TCCCTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
7 13 0.52
8 6 0.24
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:33573 original size:14 final size:15
Alignment explanation
Indices: 33549--33591 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
33539 CTTGATTCAA
*
33549 TTTTCCTTTTTTTCT
1 TTTTTCTTTTTTTCT
*
33564 TTTTTCTTTTTCT-T
1 TTTTTCTTTTTTTCT
33578 TTTTTCTTTTTTTC
1 TTTTTCTTTTTTTC
33592 CCTTTTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTCTTTTTTTCT
Found at i:33573 original size:21 final size:21
Alignment explanation
Indices: 33549--33589 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
33539 CTTGATTCAA
33549 TTTTCCTTTTTTTCTTTTTTC
1 TTTTCCTTTTTTTCTTTTTTC
*
33570 TTTTTCTTTTTTTCTTTTTT
1 TTTTCCTTTTTTTCTTTTTT
33590 TCCCTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTCCTTTTTTTCTTTTTTC
Found at i:33600 original size:10 final size:8
Alignment explanation
Indices: 33549--33591 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
33539 CTTGATTCAA
*
33549 TTTTCCTT
1 TTTTTCTT
33557 TTTTTC-T
1 TTTTTCTT
33564 TTTTTC--
1 TTTTTCTT
33570 TTTTTCTT
1 TTTTTCTT
33578 TTTTTCTT
1 TTTTTCTT
33586 TTTTTC
1 TTTTTC
33592 CCTTTTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 6 0.19
7 7 0.22
8 19 0.59
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTCTT
Found at i:33600 original size:21 final size:21
Alignment explanation
Indices: 33554--33600 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
33544 TTCAATTTTC
**
33554 CTTTTTTTCTTTTTTCTTTTT
1 CTTTTTTTCTTTTTTCCCTTT
33575 CTTTTTTTCTTTTTTTCCCTTT
1 CTTTTTTTC-TTTTTTCCCTTT
33597 -TTTT
1 CTTTT
33601 ATGAGTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
CTTTTTTTCTTTTTTCCCTTT
Found at i:35655 original size:7 final size:7
Alignment explanation
Indices: 35621--35662 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
35611 TAAAAAGTAT
35621 AAATGCA
1 AAATGCA
* *
35628 CAATGAA
1 AAATGCA
35635 AAATGCA
1 AAATGCA
35642 AAGATGCA
1 AA-ATGCA
35650 AAATGC-
1 AAATGCA
35656 AAATGCA
1 AAATGCA
35663 TGTATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (7 bp):
AAATGCA
Found at i:37707 original size:11 final size:13
Alignment explanation
Indices: 37691--37732 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 13
37681 ATGTTAAGTT
37691 TATTAATATAAT-
1 TATTAATATAATA
*
37703 T-TTAAGATAATA
1 TATTAATATAATA
37715 TATTAATATATATA
1 TATTAATATA-ATA
37729 TATT
1 TATT
37733 TTATTAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 9 0.36
12 2 0.08
13 7 0.28
14 7 0.28
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TATTAATATAATA
Found at i:38187 original size:20 final size:21
Alignment explanation
Indices: 38143--38188 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
38133 ACATATGAAA
*
38143 GTAAAATATGATTAATAAAAT
1 GTAAAATATGAGTAATAAAAT
*
38164 -TAAAATAT-AGTATTAAAAT
1 GTAAAATATGAGTAATAAAAT
38183 GTAAAA
1 GTAAAA
38189 AGTAATAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (21 bp):
GTAAAATATGAGTAATAAAAT
Found at i:39432 original size:3 final size:3
Alignment explanation
Indices: 39424--39502 Score: 63
Period size: 3 Copynumber: 26.7 Consensus size: 3
39414 CTATAATATG
* * * *
39424 TAA TAA TAA TATT TAT TAA TAA AAA T-A TAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
39469 TTA TAA CAA TTA TAA TAA TTA TAA TAA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
39503 GGCAAAAATT
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
2 4 0.07
3 53 0.90
4 2 0.03
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:42326 original size:21 final size:21
Alignment explanation
Indices: 42302--42372 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
42292 TTGAAAATCG
42302 CGTTGCGATAGTCTACAGTGT
1 CGTTGCGATAGTCTACAGTGT
* * * *
42323 CGTTGC--TATTTTCCA-TTT
1 CGTTGCGATAGTCTACAGTGT
42341 CGCGTTGCGATAGTCTACAGTGT
1 --CGTTGCGATAGTCTACAGTGT
42364 CGTTGCGAT
1 CGTTGCGAT
42373 TTTTCATTTC
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
18 2 0.05
19 6 0.16
20 6 0.16
21 15 0.41
22 6 0.16
23 2 0.05
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.38
Consensus pattern (21 bp):
CGTTGCGATAGTCTACAGTGT
Found at i:42356 original size:41 final size:41
Alignment explanation
Indices: 42299--42477 Score: 272
Period size: 41 Copynumber: 4.4 Consensus size: 41
42289 TAGTTGAAAA
*
42299 TCGCGTTGCGATAGTCTACAGTGTCGTTGCTATTTTCCATT
1 TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
*
42340 TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTTCATT
1 TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
* *
42381 TCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGATTTTCCATT
1 TCGCGTTGCGATAGTCT-ACAGT-GTCGTTGCGATTTTCCATT
* *
42422 TCGCGTTGCGATAGTGTACAGTGTCGTTGCGATTTTCCATC
1 TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
42463 TCGCGTTGCGATAGT
1 TCGCGTTGCGATAGT
42478 AGTAGCTAGA
Statistics
Matches: 126, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
40 2 0.02
41 122 0.97
42 2 0.02
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATT
Found at i:42389 original size:20 final size:20
Alignment explanation
Indices: 42364--42474 Score: 82
Period size: 20 Copynumber: 5.5 Consensus size: 20
42354 TCTACAGTGT
*
42364 CGTTGCGATTTTTCATTTCG
1 CGTTGCGATTTTCCATTTCG
* ** **
42384 CGTTGCGATAGTTGAAAATCG
1 CGTTGCGAT-TTTCCATTTCG
42405 CGTTGCGATTTTCCATTTCG
1 CGTTGCGATTTTCCATTTCG
* * *
42425 CGTTGCGATAGTGTACA-GT-G
1 CGTTGCGAT--TTTCCATTTCG
*
42445 TCGTTGCGATTTTCCATCTCG
1 -CGTTGCGATTTTCCATTTCG
42466 CGTTGCGAT
1 CGTTGCGAT
42475 AGTAGTAGCT
Statistics
Matches: 69, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
19 4 0.06
20 35 0.51
21 26 0.38
22 4 0.06
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.39
Consensus pattern (20 bp):
CGTTGCGATTTTCCATTTCG
Found at i:44809 original size:21 final size:24
Alignment explanation
Indices: 44783--44839 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 24
44773 ATTTTAAATT
*
44783 TTTATATATTTA-TG-TT-TTTTA
1 TTTATATATTTATTGATTATTTAA
44804 TTTATATATTTATTGATTATTTAA
1 TTTATATATTTATTGATTATTTAA
44828 TTTCATATATTT
1 TTT-ATATATTT
44840 TTAAAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 12 0.39
22 2 0.06
23 2 0.06
24 7 0.23
25 8 0.26
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (24 bp):
TTTATATATTTATTGATTATTTAA
Found at i:49913 original size:2 final size:2
Alignment explanation
Indices: 49908--49934 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
49898 TCTATTCTAT
49908 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
49935 ATATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:50089 original size:41 final size:41
Alignment explanation
Indices: 50037--50120 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
50027 TGTAAAATTG
*
50037 AGTTCGACTCGATTCCAAAGCTCACGAGTTTAAAATTATCA
1 AGTTCGACTCGATTCCAAAGCTCACGAGCTTAAAATTATCA
* * ** *
50078 AGTTTGACTCGATTCGAAAGCTCGTGAGCTTAAAATTTTCA
1 AGTTCGACTCGATTCCAAAGCTCACGAGCTTAAAATTATCA
50119 AG
1 AG
50121 CTCAATTCGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (41 bp):
AGTTCGACTCGATTCCAAAGCTCACGAGCTTAAAATTATCA
Found at i:54537 original size:28 final size:28
Alignment explanation
Indices: 54484--54537 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
54474 AAAATAAAAA
* *
54484 AAAATTAAATAACATAATATCTTGGACT
1 AAAATTAAATAACATAATAACATGGACT
*
54512 AAAATTAAATACGCATAA-AACATGGA
1 AAAATTAAATA-ACATAATAACATGGA
54538 GACAGAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 17 0.77
29 5 0.23
ACGTcount: A:0.54, C:0.11, G:0.09, T:0.26
Consensus pattern (28 bp):
AAAATTAAATAACATAATAACATGGACT
Found at i:55870 original size:3 final size:3
Alignment explanation
Indices: 55862--55895 Score: 50
Period size: 3 Copynumber: 10.7 Consensus size: 3
55852 TTTGTATTAC
55862 TAA TAA TAA TAA TAA TAA TAA TATA TAA TTAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA -TAA TA
55896 TTTATAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 23 0.79
4 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:56186 original size:29 final size:29
Alignment explanation
Indices: 56109--56186 Score: 66
Period size: 30 Copynumber: 2.7 Consensus size: 29
56099 TAATGGTTTG
* * * *
56109 AACCACCTGAAATTGAATTTAATGATGTT
1 AACCACTTGAACTTGAAATTAATGATGGT
* *** *
56138 GACCAGCTTGAACCCAAAATTAATTATGGT
1 AACCA-CTTGAACTTGAAATTAATGATGGT
56168 AACCACTTGAACTTGAAAT
1 AACCACTTGAACTTGAAAT
56187 ACACCAAGTT
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (29 bp):
AACCACTTGAACTTGAAATTAATGATGGT
Found at i:58183 original size:40 final size:40
Alignment explanation
Indices: 58108--58196 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
58098 TAATATTGTT
*
58108 AATTGTTAATGCTTACTGCTAATGCTTATAAACTTGAGTGA
1 AATTGTTAATGCTTACTACTAATGC-TATAAACTTGAGTGA
* * *
58149 AATTGTTAATTGGTTACTATTAATG-TATAAACTTGTGTGA
1 AATTGTTAA-TGCTTACTACTAATGCTATAAACTTGAGTGA
*
58189 ACTTGTTA
1 AATTGTTA
58197 TTGCATAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
40 21 0.50
41 9 0.21
42 12 0.29
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (40 bp):
AATTGTTAATGCTTACTACTAATGCTATAAACTTGAGTGA
Found at i:58209 original size:101 final size:101
Alignment explanation
Indices: 58048--58623 Score: 412
Period size: 101 Copynumber: 5.6 Consensus size: 101
58038 CAAATAAAAC
* *
58048 TTGTTAATTGCTTACTGTTAATGCGTATACACTTGTGTGAACTTGTTACTT-AATATTGTTAATT
1 TTGTTAATTGCTTACTGTTAAT--GTATAAACTTGTGTGAACTTGTTA-TTGCATATTGTTAATT
58112 GTTAATGCTTACTGCTAATGCTTATAAACTTGAGTGAAA
63 GTTAATGCTTACTGCTAATGCTTATAAACTTGAGTGAAA
* * *
58151 TTGTTAATTGGTTACTATTAATGTATAAACTTGTGTGAACTTGTTATTGCATAATGTTAATTGTT
1 TTGTTAATTGCTTACTGTTAATGTATAAACTTGTGTGAACTTGTTATTGCATATTGTTAATTGTT
* * *
58216 AATGCTTACTGTTAGTGCTTATAAACTTGTGTGAAA
66 AATGCTTACTGCTAATGCTTATAAACTTGAGTGAAA
* * *
58252 TTGTTAAATGCTAACTGTTAATGCTTATAAACTTGTGTGAATTTGTTATTGCATATTGTTAATTG
1 TTGTTAATTGCTTACTGTTAATG--TATAAACTTGTGTGAACTTGTTATTGCATATTGTTAATTG
* * ** ** * * *
58317 TTGATGCTTATTTTTAATAG-TTAT-TGCAT-ATTGTTAA
64 TTAATGCTTACTGCTAAT-GCTTATAAACTTGAGTG-AAA
* * *
58354 TTGTTAATT-CTTACTATTAATTCTTATAAACTTAGT-TGAAATTGTTAATTG-ATTATTGTTAA
1 TTGTTAATTGCTTACTGTTAA-T-GTATAAACTT-GTGTGAACTTGTT-ATTGCA-TATTGTTAA
* ** * * *
58416 TTCTTATAAACTT-GTG-TGAACTTG-TTATTGCATAC-T-A-T-TAA
61 TTGTTA-ATGCTTACTGCT-AA--TGCTTA-T--AAACTTGAGTGAAA
* * * * * *
58457 TTATTAA-TGCTT-CTCTTAATACTTATAAACTTGTATGAACTTGTTAATTGCTTACTGTTAATT
1 TTGTTAATTGCTTACTGTTAAT--GTATAAACTTGTGTGAACTTGTT-ATTGCATATTGTTAATT
* * * * *
58520 GTTAATGCTTATTGTTATTACTTATAAACTT-ATGTGAAC
63 GTTAATGCTTACTGCTAATGCTTATAAACTTGA-GTGAAA
* * * *
58559 TTGTTAACTGCTTACTATTAATGCTTATAAACTTGTGTGAAATTGTTATTACATATTGTTAATTG
1 TTGTTAATTGCTTACTGTTAATG--TATAAACTTGTGTGAACTTGTTATTGCATATTGTTAATTG
58624 GTTACAGTTG
Statistics
Matches: 382, Mismatches: 58, Indels: 66
0.75 0.11 0.13
Matches are distributed among these distances:
98 3 0.01
99 2 0.01
100 4 0.01
101 131 0.34
102 90 0.24
103 117 0.31
104 30 0.08
105 1 0.00
106 2 0.01
107 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (101 bp):
TTGTTAATTGCTTACTGTTAATGTATAAACTTGTGTGAACTTGTTATTGCATATTGTTAATTGTT
AATGCTTACTGCTAATGCTTATAAACTTGAGTGAAA
Found at i:58269 original size:42 final size:42
Alignment explanation
Indices: 58209--58299 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
58199 GCATAATGTT
* *
58209 AATTGTT-AATGCTTACTGTTAGTGCTTATAAACTTGTGTGA
1 AATTGTTAAATGCTAACTGTTAATGCTTATAAACTTGTGTGA
58250 AATTGTTAAATGCTAACTGTTAATGCTTATAAACTTGTGTGA
1 AATTGTTAAATGCTAACTGTTAATGCTTATAAACTTGTGTGA
*
58292 ATTTGTTA
1 AATTGTTA
58300 TTGCATATTG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
41 7 0.15
42 39 0.85
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.44
Consensus pattern (42 bp):
AATTGTTAAATGCTAACTGTTAATGCTTATAAACTTGTGTGA
Found at i:58328 original size:20 final size:20
Alignment explanation
Indices: 58294--58359 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
58284 TTGTGTGAAT
58294 TTGTTATTGCATATTGTTAA
1 TTGTTATTGCATATTGTTAA
* *
58314 TTGTTGA-TGCTTATTTTTAA
1 TTGTT-ATTGCATATTGTTAA
*
58334 TAGTTATTGCATATTGTTAA
1 TTGTTATTGCATATTGTTAA
58354 TTGTTA
1 TTGTTA
58360 ATTCTTACTA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
19 1 0.03
20 36 0.95
21 1 0.03
ACGTcount: A:0.24, C:0.05, G:0.15, T:0.56
Consensus pattern (20 bp):
TTGTTATTGCATATTGTTAA
Found at i:58340 original size:143 final size:143
Alignment explanation
Indices: 58108--58468 Score: 408
Period size: 143 Copynumber: 2.5 Consensus size: 143
58098 TAATATTGTT
* * * * * **
58108 AATTGTT-AATGCTTACTGCTAATGCTTATAAACTTGAGTGAAATTGTTAATTGGTTACTATTAA
1 AATTGTTAAATGATAACTGTTAATGCTTATAAACTTGTGTGAACTTGTT-ATTGCATACTATTAA
* * * * * * *
58172 TGTA-TAA-ACTT-GTGTGAACTTGTTATTGCATAATGTTAATTGTTAATGCTTACTGTTAGTGC
65 T-TATTAATGCTTATTTTTAA-TAGTTATTGCATAATGTTAATTGTTAATGCTTACTATTAATGC
58234 TTATAAACTT-GTGTGA
128 TTATAAACTTAGT-TGA
* * * *
58250 AATTGTTAAATGCTAACTGTTAATGCTTATAAACTTGTGTGAATTTGTTATTGCATATTGTTAAT
1 AATTGTTAAATGATAACTGTTAATGCTTATAAACTTGTGTGAACTTGTTATTGCATACTATTAAT
* * * * *
58315 TGTTGATGCTTATTTTTAATAGTTATTGCATATTGTTAATTGTTAATTCTTACTATTAATTCTTA
66 TATTAATGCTTATTTTTAATAGTTATTGCATAATGTTAATTGTTAATGCTTACTATTAATGCTTA
58380 TAAACTTAGTTGA
131 TAAACTTAGTTGA
* * * *
58393 AATTGTTAATTGATTATTGTTAATTCTTATAAACTTGTGTGAACTTGTTATTGCATACTATTAAT
1 AATTGTTAAATGATAACTGTTAATGCTTATAAACTTGTGTGAACTTGTTATTGCATACTATTAAT
58458 TATTAATGCTT
66 TATTAATGCTT
58469 CTCTTAATAC
Statistics
Matches: 184, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
141 1 0.01
142 21 0.11
143 156 0.85
144 6 0.03
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (143 bp):
AATTGTTAAATGATAACTGTTAATGCTTATAAACTTGTGTGAACTTGTTATTGCATACTATTAAT
TATTAATGCTTATTTTTAATAGTTATTGCATAATGTTAATTGTTAATGCTTACTATTAATGCTTA
TAAACTTAGTTGA
Found at i:58374 original size:40 final size:40
Alignment explanation
Indices: 58296--58374 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
58286 GTGTGAATTT
* * *
58296 GTTATTGCATATTGTTAATTGTTGATGCTTATTTTTAATA
1 GTTATTGCATATTGTTAATTGTTAATGCTTACTATTAATA
*
58336 GTTATTGCATATTGTTAATTGTTAATTCTTACTATTAAT
1 GTTATTGCATATTGTTAATTGTTAATGCTTACTATTAAT
58375 TCTTATAAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.54
Consensus pattern (40 bp):
GTTATTGCATATTGTTAATTGTTAATGCTTACTATTAATA
Found at i:58398 original size:41 final size:42
Alignment explanation
Indices: 58352--58458 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
58342 GCATATTGTT
58352 AATTGTTAATT-CTTACTATTAATTCTTATAAACTTAGT-TGA
1 AATTGTTAATTGCTTACTATTAATTCTTATAAACTT-GTGTGA
* * *
58393 AATTGTTAATTGATTATTGTTAATTCTTATAAACTTGTGTGA
1 AATTGTTAATTGCTTACTATTAATTCTTATAAACTTGTGTGA
* *
58435 ACTTGTT-ATTGCATACTATTAATT
1 AATTGTTAATTGCTTACTATTAATT
58459 ATTAATGCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 26 0.46
42 30 0.54
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (42 bp):
AATTGTTAATTGCTTACTATTAATTCTTATAAACTTGTGTGA
Found at i:58501 original size:143 final size:142
Alignment explanation
Indices: 58205--58519 Score: 377
Period size: 143 Copynumber: 2.2 Consensus size: 142
58195 TATTGCATAA
* * * *
58205 TGTTAATTGTTAATGCTTACTGTTAGTGCTTATAAACTTGTGTGAAATTGTTAAATGCTAACTGT
1 TGTTAATTGTTAATTCTTACTGTTAATTCTTATAAACTTGTGTGAAATTGTTAAATGATAACTGT
* * * * * * *
58270 TAATGCTTATAAACTTGTGTGAATTTGTTATTGCATATTGTTAATTGTTGATGCTTATTTTTAAT
66 TAATGCTTATAAACTTGTGTGAACTTGTTATTGCATACTATTAATTATTAATGCTTACTCTTAAT
* *
58335 AGTTATTGCATAT
131 ACTTATT-CAAAT
* * * *
58348 TGTTAATTGTTAATTCTTACTATTAATTCTTATAAACTTAGT-TGAAATTGTTAATTGATTATTG
1 TGTTAATTGTTAATTCTTACTGTTAATTCTTATAAACTT-GTGTGAAATTGTTAAATGATAACTG
*
58412 TTAATTCTTATAAACTTGTGTGAACTTGTTATTGCATACTATTAATTATTAATGCTT-CTCTTAA
65 TTAATGCTTATAAACTTGTGTGAACTTGTTATTGCATACTATTAATTATTAATGCTTACTCTTAA
58476 TACTTA-T-AAACT
130 TACTTATTCAAA-T
58488 TGTATGAACTTGTTAATTGCTTACTGTTAATT
1 TGT-T-AA-TTGTTAATT-CTTACTGTTAATT
58520 GTTAATGCTT
Statistics
Matches: 147, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
139 2 0.01
140 4 0.03
141 2 0.01
142 12 0.08
143 113 0.77
144 14 0.10
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (142 bp):
TGTTAATTGTTAATTCTTACTGTTAATTCTTATAAACTTGTGTGAAATTGTTAAATGATAACTGT
TAATGCTTATAAACTTGTGTGAACTTGTTATTGCATACTATTAATTATTAATGCTTACTCTTAAT
ACTTATTCAAAT
Found at i:58530 original size:20 final size:21
Alignment explanation
Indices: 58497--58536 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
58487 TTGTATGAAC
58497 TTGTTAATTGCTTACTGTTAA
1 TTGTTAATTGCTTACTGTTAA
*
58518 TTGTTAA-TGCTTATTGTTA
1 TTGTTAATTGCTTACTGTTA
58537 TTACTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.23, C:0.07, G:0.15, T:0.55
Consensus pattern (21 bp):
TTGTTAATTGCTTACTGTTAA
Found at i:58560 original size:62 final size:62
Alignment explanation
Indices: 58393--58580 Score: 247
Period size: 62 Copynumber: 3.0 Consensus size: 62
58383 ACTTAGTTGA
* *
58393 AATTGTTAATTGATTATTGTTAATT-CTTATAAACTTGTGTGAACTTGTT-ATTGCATACTATT
1 AATTGTTAA-TGCTTATTGTT-ATTACTTATAAACTTGTGTGAACTTGTTAATTGCTTACTATT
* * * * * *
58455 AATTATTAATGCTT-CTCTTAATACTTATAAACTTGTATGAACTTGTTAATTGCTTACTGTT
1 AATTGTTAATGCTTATTGTTATTACTTATAAACTTGTGTGAACTTGTTAATTGCTTACTATT
* *
58516 AATTGTTAATGCTTATTGTTATTACTTATAAACTTATGTGAACTTGTTAACTGCTTACTATT
1 AATTGTTAATGCTTATTGTTATTACTTATAAACTTGTGTGAACTTGTTAATTGCTTACTATT
58578 AAT
1 AAT
58581 GCTTATAAAC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
59 2 0.02
60 26 0.24
61 28 0.26
62 51 0.48
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (62 bp):
AATTGTTAATGCTTATTGTTATTACTTATAAACTTGTGTGAACTTGTTAATTGCTTACTATT
Found at i:58586 original size:42 final size:41
Alignment explanation
Indices: 58516--58606 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 41
58506 GCTTACTGTT
* * *
58516 AATTGTTAATGCTTATTGTTATTACTTATAAACTTATGTGA
1 AATTGTTAATGCTTACTATTAATACTTATAAACTTATGTGA
* * *
58557 ACTTGTTAACTGCTTACTATTAATGCTTATAAACTTGTGTGA
1 AATTGTTAA-TGCTTACTATTAATACTTATAAACTTATGTGA
58599 AATTGTTA
1 AATTGTTA
58607 TTACATATTG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 8 0.19
42 34 0.81
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (41 bp):
AATTGTTAATGCTTACTATTAATACTTATAAACTTATGTGA
Found at i:61812 original size:2 final size:2
Alignment explanation
Indices: 61805--61841 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
61795 TTTTTAAAAC
61805 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61842 CCCCCATCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:62028 original size:12 final size:12
Alignment explanation
Indices: 62003--62060 Score: 71
Period size: 12 Copynumber: 4.8 Consensus size: 12
61993 ACGAAGATAT
* *
62003 CAGAAATCAAAA
1 CAGAATTCAGAA
62015 CAGAATTCAGAA
1 CAGAATTCAGAA
* *
62027 CAGAATCCAGAT
1 CAGAATTCAGAA
*
62039 CAGAAATCAGAA
1 CAGAATTCAGAA
62051 CAGAATTCAG
1 CAGAATTCAG
62061 GTCATTTATC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.52, C:0.19, G:0.16, T:0.14
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:62056 original size:24 final size:24
Alignment explanation
Indices: 62015--62097 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 24
62005 GAAATCAAAA
* *
62015 CAGAATTCAGAACAGAATCCAGAT
1 CAGAAATCAGAACAGAATTCAGAT
*
62039 CAGAAATCAGAACAGAATTCAGGT
1 CAGAAATCAGAACAGAATTCAGAT
***
62063 CATTTATCAGAACAGAATTCA-AGT
1 CAGAAATCAGAACAGAATTCAGA-T
*
62087 CGGAAATCAGA
1 CAGAAATCAGA
62098 TAAAATATTT
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.19
Consensus pattern (24 bp):
CAGAAATCAGAACAGAATTCAGAT
Found at i:64590 original size:15 final size:15
Alignment explanation
Indices: 64570--64598 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64560 GTGGTCAACT
64570 ACGGTCAACGGGTCA
1 ACGGTCAACGGGTCA
64585 ACGGTCAACGGGTC
1 ACGGTCAACGGGTC
64599 GGGTCGGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.28, G:0.34, T:0.14
Consensus pattern (15 bp):
ACGGTCAACGGGTCA
Found at i:64610 original size:18 final size:18
Alignment explanation
Indices: 64587--64625 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
64577 ACGGGTCAAC
64587 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
64605 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
64623 GGT
1 GGT
64626 TGTGACTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.21, G:0.51, T:0.18
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:66217 original size:15 final size:15
Alignment explanation
Indices: 66197--66252 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
66187 TAATTTTAAT
66197 CAGAAATTAAAATAA
1 CAGAAATTAAAATAA
* *
66212 CAGAAATTAAACTATG
1 CAGAAATTAAAATA-A
66228 CA-AAATTAAAATAA
1 CAGAAATTAAAATAA
*
66242 CAGTAATTAAA
1 CAGAAATTAAA
66253 CAATTGAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 2 0.06
15 30 0.88
16 2 0.06
ACGTcount: A:0.61, C:0.09, G:0.07, T:0.23
Consensus pattern (15 bp):
CAGAAATTAAAATAA
Found at i:68277 original size:40 final size:40
Alignment explanation
Indices: 68222--68383 Score: 288
Period size: 40 Copynumber: 4.0 Consensus size: 40
68212 ACCGTAGTGC
*
68222 TACACATAAGGTCGTGCCCACCATATACATCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
68262 TACACATAAGGTCGTGCCCACCATATACACCGAAATGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
68302 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
* *
68342 TACACATAAGGTCATGCCCACCATATACACTGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
68382 TA
1 TA
68384 TAAACCTACA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 117 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:79734 original size:34 final size:36
Alignment explanation
Indices: 79686--79752 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 36
79676 AGATAAACCC
*
79686 TTTCTTAATATTAAAAAATA-A-ATAAATATTATCA
1 TTTCCTAATATTAAAAAATAGATATAAATATTATCA
*
79720 TTTCCTAATATTAAAATATAGATATAAATATTA
1 TTTCCTAATATTAAAAAATAGATATAAATATTA
79753 AAAATTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 18 0.62
35 1 0.03
36 10 0.34
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (36 bp):
TTTCCTAATATTAAAAAATAGATATAAATATTATCA
Found at i:80979 original size:3 final size:3
Alignment explanation
Indices: 80973--81010 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
80963 TTAATTTATT
80973 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
81011 AAAATAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:81016 original size:12 final size:14
Alignment explanation
Indices: 80977--81019 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
80967 TTTATTTAAT
80977 AATAATAATAATAA
1 AATAATAATAATAA
80991 TAATAATAATAATAA
1 -AATAATAATAATAA
81006 AATAA-AA-AATAA
1 AATAATAATAATAA
81018 AA
1 AA
81020 AAATGGGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.25
13 2 0.07
14 5 0.18
15 14 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAATAATAATAA
Found at i:81439 original size:123 final size:123
Alignment explanation
Indices: 81252--81557 Score: 427
Period size: 123 Copynumber: 2.5 Consensus size: 123
81242 TTCTATGGTG
* * * *
81252 TAATCTAGCAAAAGGTTGAACAAGTTCTTCA-AATATGAAGTTCTTCTTCCTCTTCAGATGAGTT
1 TAATCAAGCAAAAGATTGAACAAGTTCTTCAGAATATGAACTTCTTCTTCCTCTTTAGATGAGTT
*
81316 CTTCTTATTACGAACTCTATCTGGAAATGTTGATGCT-CTTCTATCTCCTTCTGCGATA
66 CTTCTTATTACGAACTCTATCTGGAAATATTGATGCTGC-TCTATCTCCTTCTGCGATA
* * * * *
81374 TAATCGAGCGAAAGATTGAACAAATTCTTCAGACTATGAACTTCTTCTTCCTCTTTAGTTGAGTT
1 TAATCAAGCAAAAGATTGAACAAGTTCTTCAGAATATGAACTTCTTCTTCCTCTTTAGATGAGTT
* *
81439 CTTCTTATTACGAACTCTGTCTGGAAATATTGATGCTGCTCTATCTTCTTCTGCGATA
66 CTTCTTATTACGAACTCTATCTGGAAATATTGATGCTGCTCTATCTCCTTCTGCGATA
* * * * *
81497 GAGTCAAGCAAAAAGCTTGAATAAGTTCTTCAGATTATGAACTTCTTCTTCCTCTTTAGAT
1 TAATCAAGC-AAAAGATTGAACAAGTTCTTCAGAATATGAACTTCTTCTTCCTCTTTAGAT
81558 TATGAACTTC
Statistics
Matches: 161, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
122 27 0.17
123 88 0.55
124 46 0.29
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (123 bp):
TAATCAAGCAAAAGATTGAACAAGTTCTTCAGAATATGAACTTCTTCTTCCTCTTTAGATGAGTT
CTTCTTATTACGAACTCTATCTGGAAATATTGATGCTGCTCTATCTCCTTCTGCGATA
Found at i:81559 original size:26 final size:26
Alignment explanation
Indices: 81523--81583 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
81513 TTGAATAAGT
81523 TCTTCAGATTATGAACTTCTTCTTCC
1 TCTTCAGATTATGAACTTCTTCTTCC
*
81549 TCTTTAGATTATGAACTTCTTCTTCC
1 TCTTCAGATTATGAACTTCTTCTTCC
81575 TCTTCAGAT
1 TCTTCAGAT
81584 GAGTTCTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.20, C:0.25, G:0.08, T:0.48
Consensus pattern (26 bp):
TCTTCAGATTATGAACTTCTTCTTCC
Found at i:81572 original size:150 final size:150
Alignment explanation
Indices: 81399--81707 Score: 487
Period size: 150 Copynumber: 2.1 Consensus size: 150
81389 TTGAACAAAT
* * *
81399 TCTTCAGACTATGAACTTCTTCTTCCTCTTTAGTTGAGTTCTTCTTATTACGAAC-TCTGTCTGG
1 TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCT-TCTGG
*
81463 AAATATTGATGCTGCTCTATCTTC-TTCTGCGATAGAGTCAAGCAAAAAGCTTGAATAAGTTCTT
65 AAATATTGATGCTACTCTATC-TCATTCTGCGATAGAGTCAAGCAAAAAGCTTGAATAAGTTCTT
81527 CAGATTATGAACTTCTTCTTCC
129 CAGATTATGAACTTCTTCTTCC
* *
81549 TCTTTAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTATGAACTTCTTCTGGA
1 TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
* * * * *
81614 AATGTTGATGCTACTCTATCTCATTCTGCGATAGTGTCGAGCAAAAAGGTTGAATAAGTTCTTCG
66 AATATTGATGCTACTCTATCTCATTCTGCGATAGAGTCAAGCAAAAAGCTTGAATAAGTTCTTCA
81679 GATTATGAACTTCTTCTTCC
131 GATTATGAACTTCTTCTTCC
81699 TCTTCAGAT
1 TCTTCAGAT
81708 GAGTTCTTCT
Statistics
Matches: 145, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
149 2 0.01
150 140 0.97
151 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (150 bp):
TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
AATATTGATGCTACTCTATCTCATTCTGCGATAGAGTCAAGCAAAAAGCTTGAATAAGTTCTTCA
GATTATGAACTTCTTCTTCC
Found at i:81696 original size:124 final size:124
Alignment explanation
Indices: 81549--81993 Score: 757
Period size: 124 Copynumber: 3.6 Consensus size: 124
81539 TTCTTCTTCC
* *
81549 TCTTTAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTATGAACTTCTTCTGGA
1 TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
* * * *
81614 AATGTTGATGCTACTCTATCTCATTCTGCGATAGTGTCGAGCAAAAAGGTTGAATAAGT
66 AATGTTGATGCTGCTCTATCTCCTTCTGCGATAGAGTCAAGCAAAAAGGTTGAATAAGT
*
81673 TCTTCGGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
1 TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
* *
81738 AATGTTGATGCTGCTCTATATCCTTCTGCGATAGAGTCAAGCAAAAAGGCTGAATAAGT
66 AATGTTGATGCTGCTCTATCTCCTTCTGCGATAGAGTCAAGCAAAAAGGTTGAATAAGT
*
81797 TCTTCATATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
1 TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
* *
81862 AATATTGATGCTGCTCTATCTCCTTCTGCGATAGAGTCAAGAAAAAAGGTTGAATAAGT
66 AATGTTGATGCTGCTCTATCTCCTTCTGCGATAGAGTCAAGCAAAAAGGTTGAATAAGT
* *
81921 TCTTCAGATTATGAACTTCTTCTTCCTCTTCA-ACGAGATCTTCTTATTACGAACTTCTTCTGGA
1 TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
81985 AATGTTGAT
66 AATGTTGAT
81994 CCATCAAGTG
Statistics
Matches: 302, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
123 38 0.13
124 264 0.87
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (124 bp):
TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCTTCTGGA
AATGTTGATGCTGCTCTATCTCCTTCTGCGATAGAGTCAAGCAAAAAGGTTGAATAAGT
Found at i:81780 original size:274 final size:273
Alignment explanation
Indices: 81277--81831 Score: 852
Period size: 274 Copynumber: 2.0 Consensus size: 273
81267 TTGAACAAGT
* *
81277 TCTTCA-AATATGAAGTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTCTATCTGGA
1 TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTCTATCTGGA
* *
81341 AATGTTGATGCTCTTCTATCTCCTTCTGCGATATAATCGAGCGAAAGATTGAACAAATTCTTCAG
66 AATGTTGATGCTCTTCTATCTCATTCTGCGATATAATCGAGCAAAAGATTGAACAAATTCTTCAG
* *
81406 ACTATGAACTTCTTCTTCCTCTTTAGTTGAGTTCTTCTTATTACGAACTCTGTCTGGAAATATTG
131 ACTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTCTGTCTGGAAATATTG
* *
81471 ATGCTGCTCTATCTTCTTCTGCGATAGAGTCAAGCAAAAA-GCTTGAATAAGTTCTTCAGATTAT
196 ATGCTGCTCTATATCCTTCTGCGATAGAGTCAAGCAAAAAGGC-TGAATAAGTTCTTCAGATTAT
81535 GAACTTCTTCTTCC
260 GAACTTCTTCTTCC
* *
81549 TCTTTAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTATGAACTTCT-TCTGG
1 TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAAC-TCTATCTGG
* * * *
81613 AAATGTTGATGCTAC-TCTATCTCATTCTGCGATAGT-GTCGAGCAAAAAGGTTGAATAAGTTCT
65 AAATGTTGATGCT-CTTCTATCTCATTCTGCGATA-TAATCGAGC-AAAAGATTGAACAAATTCT
* *
81676 TCGGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTTCT-TCTGGAAA
127 TCAGACTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAAC-TCTGTCTGGAAA
* *
81740 TGTTGATGCTGCTCTATATCCTTCTGCGATAGAGTCAAGCAAAAAGGCTGAATAAGTTCTTCATA
191 TATTGATGCTGCTCTATATCCTTCTGCGATAGAGTCAAGCAAAAAGGCTGAATAAGTTCTTCAGA
81805 TTATGAACTTCTTCTTCC
256 TTATGAACTTCTTCTTCC
81823 TCTTCAGAT
1 TCTTCAGAT
81832 GAGTTCTTCT
Statistics
Matches: 257, Mismatches: 19, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
272 5 0.02
273 87 0.34
274 160 0.62
275 5 0.02
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.39
Consensus pattern (273 bp):
TCTTCAGATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTCTATCTGGA
AATGTTGATGCTCTTCTATCTCATTCTGCGATATAATCGAGCAAAAGATTGAACAAATTCTTCAG
ACTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTTATTACGAACTCTGTCTGGAAATATTG
ATGCTGCTCTATATCCTTCTGCGATAGAGTCAAGCAAAAAGGCTGAATAAGTTCTTCAGATTATG
AACTTCTTCTTCC
Found at i:84800 original size:2 final size:2
Alignment explanation
Indices: 84795--84850 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
84785 GTTTTTTTAC
84795 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84837 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
84851 GCATATTTGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84901 original size:24 final size:24
Alignment explanation
Indices: 84874--84920 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
84864 TTACATTACT
*
84874 TATATATATATGTTTTATA-ATTTG
1 TATATA-ATATATTTTATACATTTG
*
84898 TATATAATGTATTTTATACATTT
1 TATATAATATATTTTATACATTT
84921 ATTGGACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (24 bp):
TATATAATATATTTTATACATTTG
Done.