genome.fa.s1159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001159.1 Hibiscus syriacus cultivar Beakdansim tig00002311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73069

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2587--2621	15	2.3	15	90	0	52	5	62	20	11	1.48
7961--8043	21	3.7	22	79	6	78	42	2	3	51	1.32
7987--8015	13	2.1	14	93	6	51	48	0	0	51	1.00
9193--9276	23	3.7	23	93	0	141	17	25	27	29	1.98
13018--13850	416	2.0	416	89	1	1260	34	15	22	28	1.94
14641--15215	291	2.0	291	99	0	1141	24	11	25	38	1.89
17335--17437	36	2.9	36	88	0	161	25	13	17	43	1.85
18032--18489	227	2.0	227	96	0	853	42	7	11	38	1.69
24984--25086	36	2.9	36	91	2	163	24	13	16	45	1.83
31398--31440	19	2.4	17	85	11	59	55	2	2	39	1.25
31753--31821	30	2.3	29	83	9	86	49	5	8	36	1.58
32132--32174	16	2.8	15	79	6	50	48	0	2	48	1.14
32292--32371	42	1.9	42	89	0	124	43	15	11	30	1.81
37616--37680	23	3.3	19	83	12	60	16	30	30	21	1.96
37639--37689	23	2.3	23	96	3	95	19	23	37	19	1.94
43608--43637	11	2.7	11	94	0	51	46	0	0	53	1.00
44086--44157	35	2.0	36	86	2	101	31	11	37	19	1.87
44217--44319	2	55.0	2	70	12	76	50	0	0	49	1.00
44234--44312	41	1.9	41	94	0	140	50	0	0	49	1.00
44426--44476	25	2.0	25	88	0	75	19	11	43	25	1.85
45549--45662	60	1.9	60	80	7	133	30	19	7	42	1.77
45839--46007	60	2.8	60	75	5	164	37	5	23	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49920--49968	21	2.3	21	96	0	89	38	10	10	40	1.73
51701--51754	21	2.6	20	80	8	63	24	22	20	33	1.97
51766--51836	20	3.5	20	94	0	115	26	26	19	26	1.99
52014--52056	22	2.0	22	90	0	68	23	39	16	20	1.92
52440--52492	20	2.7	20	84	0	70	20	16	22	39	1.92
52460--52515	20	2.8	20	86	0	76	12	12	21	53	1.71
54240--54285	18	2.6	18	100	0	92	32	21	4	41	1.73
54437--54504	20	3.4	20	95	0	127	38	25	20	16	1.92
54530--54576	20	2.5	19	89	6	69	14	19	27	38	1.91
55067--55123	21	2.7	21	100	0	114	21	35	21	22	1.96
55066--55193	21	6.1	21	77	1	107	21	38	18	21	1.94
56738--56791	20	2.7	20	85	5	74	42	27	18	11	1.84
56785--56827	20	2.2	20	83	4	52	25	20	25	27	1.99
56800--56970	34	4.9	34	79	9	146	22	18	22	36	1.95
56857--56902	20	2.3	20	84	0	56	28	19	21	30	1.98
56943--56998	20	2.8	20	94	0	94	28	16	23	32	1.96
57169--57203	18	1.9	18	94	0	61	17	2	25	54	1.57
60513--60586	21	3.5	21	86	0	103	22	20	18	37	1.94
60576--60626	20	2.5	20	100	0	102	37	17	21	23	1.94
60615--60688	20	3.7	20	90	0	112	28	25	18	27	1.98
60595--60686	40	2.3	40	79	3	105	31	23	19	25	1.98
60864--60905	22	1.9	22	85	9	59	26	35	14	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61300--61353	20	2.7	20	85	0	72	18	16	24	40	1.90
61298--61363	20	3.3	20	74	6	53	19	15	22	42	1.88
63077--63126	18	2.8	18	100	0	100	32	20	6	42	1.76
63343--63427	18	4.5	18	88	8	107	18	18	25	36	1.94
63914--64018	21	5.0	21	74	3	95	20	37	19	22	1.95
63911--64021	42	2.6	42	78	5	118	20	37	18	22	1.94
65421--65482	14	4.3	14	77	6	61	37	1	16	45	1.57
65581--65634	20	2.7	20	85	5	74	42	27	18	11	1.84
65628--65670	20	2.2	20	83	4	52	25	20	25	27	1.99
65679--65841	20	8.8	20	70	15	89	25	17	22	34	1.96
65643--65813	34	4.9	34	77	9	146	22	18	22	36	1.95
66009--66043	18	1.9	18	94	0	61	17	2	25	54	1.57
68204--68262	24	2.5	23	80	2	73	38	18	18	23	1.93
68781--68821	19	2.1	20	95	4	75	46	36	4	12	1.63
69084--69186	20	5.2	20	90	0	134	30	19	24	26	1.98
69083--69250	40	4.2	40	78	5	160	29	18	24	27	1.98
69580--69617	12	3.2	12	88	0	58	23	44	18	13	1.85
69640--69720	13	5.8	15	68	18	50	51	0	0	48	1.00

Tables:   1

The End!