Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001162.1 Hibiscus syriacus cultivar Beakdansim tig00002317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1560963
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 9
Found at i:1551910 original size:16 final size:16
Alignment explanation
Indices: 1551881--1551917 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
1551871 TGCTGTGTTC
1551881 TCTTTCTCTGTTTTTT
1 TCTTTCTCTGTTTTTT
1551897 TCTTT-TCTGTTTTTT
1 TCTTTCTCTGTTTTTT
1551912 T-TTTCT
1 TCTTTCT
1551918 TGTCGTTCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 3 0.15
15 12 0.60
16 5 0.25
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.78
Consensus pattern (16 bp):
TCTTTCTCTGTTTTTT
Found at i:1552192 original size:27 final size:27
Alignment explanation
Indices: 1552156--1552219 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
1552146 GCAGTGAGGC
* *
1552156 GGCGGCTGGGATTCTTGAAGTATCAGA
1 GGCGGCTGGGATTCTGGAAGCATCAGA
1552183 GGCGGCTGGGATTCTGGAAGCATCAGA
1 GGCGGCTGGGATTCTGGAAGCATCAGA
1552210 GGCGGCTGGG
1 GGCGGCTGGG
1552220 GGTGGCTAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.19, C:0.17, G:0.44, T:0.20
Consensus pattern (27 bp):
GGCGGCTGGGATTCTGGAAGCATCAGA
Found at i:1552346 original size:3 final size:3
Alignment explanation
Indices: 1552338--1552455 Score: 155
Period size: 3 Copynumber: 38.7 Consensus size: 3
1552328 TTATTTATTA
* * *
1552338 AAT AAT AAT AAT ATAT AAT ATT GAT AAT AAT AAT AAT AAAT AAT GAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* *
1552385 AAT AAT AAT AAT AAT TAT AAT AAT AAT AAT AAT ACT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
**
1552433 AAT TTT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
1552456 ATTTAAATGA
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
3 93 0.94
4 6 0.06
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:1553223 original size:112 final size:111
Alignment explanation
Indices: 1553092--1554097 Score: 949
Period size: 118 Copynumber: 8.7 Consensus size: 111
1553082 ATAGAATTAT
* *
1553092 GCAAAAAGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* **
1553157 ATTATGAACTTCTCTGGAAAAGCTGCTCCATCAAGTGATGGATTTGA
66 ATTATGAACTTCTCTGGAAAA-CTGATCCATCAAGTGATGGATTCAA
* *
1553204 GCAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGA-TTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * *
1553268 ATTATGAACCTTTTCTGGCAAAAATAATCCATCAAGTGATGAATTC-A
66 ATTATGAA-CTTCTCTGG-AAAACTGATCCATCAAGTGATGGATTCAA
1553315 GACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 G-CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * *** *
1553380 CATTATGGACTTCTCTGGCAAAAATAATCCATC-TG-GCAAAAATAATCCA
65 CATTATGAACTTCTCTGG-AAAACTGATCCATCAAGTG-ATGGAT--TCAA
* * * * * ** * * ****
1553429 TCAGTGATGAATTCAGAAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT-CTTCCTTCT
1 GCA--AAAG-GTT--GAACAAA--TT---C---TTCTCATTATGAACTTCTTCTTCCTT-CTTC-
* * **
1553493 TCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGTTGATTCATCAAGTGATGGATTTGA
51 --AGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAA-CTGATCCATCAAGTGATGGATTCAA
*
1553557 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTT
* *
1553622 CTCATTATGAACTCTACCTCTGGCAACAA-TAATCCATCAAGTGATGAATTCAA
63 CTCATTATGAACT-T--CTCTGG-AA-AACTGATCCATCAAGTGATGGATTCAA
* *
1553675 ACAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
1553740 ATTATGAAC-TCTACCTGGAAAGGCTGATCCAGCAAATGATGGATTCAA
66 ATTATGAACTTCT--CTGGAAA-ACTGATCCATCAAGTGATGGATTCAA
* *
1553788 GTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTT
*
1553853 CTCATTATGAACTCTACCTCTGGAAATACTGAAT-CATCGAA-TGATGAATTCAA
63 CTCATTATGAACT-T--CTCTGGAAA-ACTG-ATCCATC-AAGTGATGGATTCAA
* *
1553906 GCGAAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCT
1 GC-AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCT
*
1553970 TCTCATTATGAACTCTACCTCTGGAAATACTGAAT-CATCGAA-TGATGAATTCAA
62 TCTCATTATGAACT-T--CTCTGGAAA-ACTG-ATCCATC-AAGTGATGGATTCAA
*
1554024 GCGAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 GC-AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1554088 CATTATGAAC
65 CATTATGAAC
1554098 CGAACTGGAA
Statistics
Matches: 762, Mismatches: 78, Indels: 105
0.81 0.08 0.11
Matches are distributed among these distances:
110 1 0.00
111 25 0.03
112 164 0.22
113 94 0.12
114 1 0.00
115 84 0.11
116 29 0.04
118 264 0.35
119 10 0.01
120 6 0.01
121 2 0.00
123 6 0.01
125 5 0.01
126 20 0.03
128 8 0.01
129 38 0.05
130 4 0.01
131 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (111 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTCTCTGGAAAACTGATCCATCAAGTGATGGATTCAA
Found at i:1553416 original size:18 final size:18
Alignment explanation
Indices: 1553393--1553430 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
1553383 TATGGACTTC
1553393 TCTGGCAAAAATAATCCA
1 TCTGGCAAAAATAATCCA
1553411 TCTGGCAAAAATAATCCA
1 TCTGGCAAAAATAATCCA
1553429 TC
1 TC
1553431 AGTGATGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.24
Consensus pattern (18 bp):
TCTGGCAAAAATAATCCA
Found at i:1553451 original size:129 final size:129
Alignment explanation
Indices: 1553281--1553659 Score: 488
Period size: 129 Copynumber: 3.0 Consensus size: 129
1553271 ATGAACCTTT
1553281 TCTGGCAAAAATAATCCATCAAGTGATGAATTCAGACAAAAGGTTGAACAAATTCTTCTCATTAT
1 TCTGGCAAAAATAATCCATC-AGTGATGAATTCAGACAAAAGGTTGAACAAATTCTTCTCATTAT
*
1553346 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGGACTTCTCTGGCAAAAATAATCCA
65 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGCAAAAATAATCCA
*
1553411 TCTGGCAAAAATAATCCATCAGTGATGAATTCAGAAAAAAGGTTGAACAAATTCTTCTCATTATG
1 TCTGGCAAAAATAATCCATCAGTGATGAATTCAGACAAAAGGTTGAACAAATTCTTCTCATTATG
* *
1553476 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGG-AAAAGT--T-GA
66 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGCAAAAATAATCCA
* * *
1553536 T-T--C-------AT-CA--AGTGATGGATTTGAG-CAAAAGGTTGAACAAGTTCTTCTCATTAT
1 TCTGGCAAAAATAATCCATCAGTGAT-GAATTCAGACAAAAGGTTGAACAAATTCTTCTCATTAT
*
1553587 GAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTCTGGCAACAAT
65 GAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACT-T--CTCTGGCAAAAAT
1553652 AATCCA
124 AATCCA
1553658 TC
1 TC
1553660 AAGTGATGAA
Statistics
Matches: 226, Mismatches: 11, Indels: 31
0.84 0.04 0.12
Matches are distributed among these distances:
112 57 0.25
113 6 0.03
114 2 0.01
115 23 0.10
116 1 0.00
118 6 0.03
119 4 0.02
121 1 0.00
122 3 0.01
124 1 0.00
125 2 0.01
126 1 0.00
128 5 0.02
129 94 0.42
130 20 0.09
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.35
Consensus pattern (129 bp):
TCTGGCAAAAATAATCCATCAGTGATGAATTCAGACAAAAGGTTGAACAAATTCTTCTCATTATG
AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGCAAAAATAATCCA
Found at i:1554037 original size:349 final size:343
Alignment explanation
Indices: 1553447--1554097 Score: 1035
Period size: 349 Copynumber: 1.9 Consensus size: 343
1553437 GAATTCAGAA
*
1553447 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGACGAGTTCTTCTCAT
* * * **
1553512 TATGAACTTCTCTGGAAAAGTTGATTCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGTTC
66 TATGAACTTCTCTGGAAAAGCTGAATCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAGTTC
1553577 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTC
131 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTC
*
1553642 TGGCAACAATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGA
196 TGGAAACAATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGA
*
1553707 ATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAAGGCTGATCCAG
261 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAAGGCTGATCCAG
1553772 CAAATGATGGATTCAAGT
326 CAAATGATGGATTCAAGT
1553790 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GACGAGTTCTTCT
1553855 CATTATGAACTCTACCTCTGGAAATA-CTGAATCATCGAA-TGATGAATTCAAGCGAAAA-GTTG
63 CATTATGAACT-T--CTCTGGAAA-AGCTGAATCATC-AAGTGATGAATTCAAGC-AAAAGGTTG
*
1553917 AACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAA
122 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAA
* * * *
1553982 CTCTACCTCTGGAAATACTGAAT-CATCGAA-TGATGAATTCAAGCGAAAA-GTTGAACAAGTTC
187 CTCTACCTCTGGAAACAAT-AATCCATC-AAGTGATGAATTCAAAC-AAAAGGTTGAACAAATTC
1554044 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
249 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
1554098 CGAACTGGAA
Statistics
Matches: 283, Mismatches: 13, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
343 48 0.17
345 1 0.00
346 23 0.08
347 1 0.00
349 194 0.69
350 16 0.06
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36
Consensus pattern (343 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGACGAGTTCTTCTCAT
TATGAACTTCTCTGGAAAAGCTGAATCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAGTTC
TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTC
TGGAAACAATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGA
ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAAGGCTGATCCAG
CAAATGATGGATTCAAGT
Found at i:1554593 original size:22 final size:22
Alignment explanation
Indices: 1554568--1554622 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
1554558 CATAAAGTTT
*
1554568 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
*
1554590 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
1554612 TCATCTTTGAA
1 TCATCTTTGAA
1554623 GAGTGTAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:1555116 original size:54 final size:54
Alignment explanation
Indices: 1554994--1555192 Score: 248
Period size: 54 Copynumber: 3.8 Consensus size: 54
1554984 ACTGGTTCAT
* * *
1554994 AAACATTTGACAATACATTCAT-CTTTTCCTGTGGTTTCTG-TC-GA-G-ATGTA
1 AAACATTTGACAACACATTCATCCTTTT-CTGTGGCTTCTGCTCAGATGTTTGTA
*
1555044 AAACACTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGTTTGTA
1 AAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGTTTGTA
* * **
1555098 AAACATTTGACAACACATTCATCC-TTTCTTGTGGTTTTTGCTCAGATGTTCATA
1 AAACATTTGACAACACATTCATCCTTTTC-TGTGGCTTCTGCTCAGATGTTTGTA
* *
1555152 AAGCGTTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
1 AAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
1555193 CAAGATTTCT
Statistics
Matches: 129, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
50 31 0.24
51 7 0.05
52 2 0.02
53 5 0.04
54 80 0.62
55 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (54 bp):
AAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGTTTGTA
Found at i:1557833 original size:164 final size:167
Alignment explanation
Indices: 1557334--1557967 Score: 1097
Period size: 164 Copynumber: 3.8 Consensus size: 167
1557324 ATTCCTACCG
* * *
1557334 AACCAGATCAGATAACTCAAAGAACATTTCCAAAAGATGCTATTGAACACATTATTCTTCCAAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCC-AGAGATGCTATTGAGCACATTATTCTTCCAAAT
*
1557399 TCAATGATTAG-TCTTGTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
65 TCAATGATTAGTTC-TGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
*
1557463 AGCACATTATTCTTCCAAATTCAATGATTAGTTCTGTCC
129 AGCACATTATTCTTCCAAATTCAATGATTGGTTCTGTCC
1557502 AACCAGATCAGATAACTCAAAGAACACTTCCAGAGATGCTATTGAGCACATTATTCTTCCAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAGATGCTATTGAGCACATTATTCTTCCAAATT
1557567 CAATGATTAGTTCTGTCCAACCAGATCAGAT-ACTCAAAGAACACTTCCAGAAGATGCTATTGAG
66 CAATGATTAGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAG
1557631 CACATTATTCTTCCAAATTCAATGATTGG-TCTTGTCC
131 CACATTATTCTTCCAAATTCAATGATTGGTTC-TGTCC
1557668 AACCAGATCAGATAACTCAAAGAACACTTCCAGA-ATGCTATTGAGCACATTA-TCTTCCAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAGATGCTATTGAGCACATTATTCTTCCAAATT
*
1557731 CAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAG
66 CAATGATTAGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAG
1557796 CACATTATTCTTCC-AATTCAATGATTGGTTCTGTCC
131 CACATTATTCTTCCAAATTCAATGATTGGTTCTGTCC
*
1557832 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTA-TATT-C-AAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAG-AGATGCTATTGAGCACATTATTCTTCCAAAT
*
1557894 TCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGA
65 TCAATGATTAGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGA
1557959 GCACATTAT
130 GCACATTAT
1557968 ATTTGTTCCA
Statistics
Matches: 453, Mismatches: 7, Indels: 16
0.95 0.01 0.03
Matches are distributed among these distances:
164 170 0.38
165 71 0.16
166 121 0.27
167 59 0.13
168 32 0.07
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (167 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAGATGCTATTGAGCACATTATTCTTCCAAATT
CAATGATTAGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAG
CACATTATTCTTCCAAATTCAATGATTGGTTCTGTCC
Found at i:1557970 original size:81 final size:84
Alignment explanation
Indices: 1557334--1557967 Score: 1101
Period size: 83 Copynumber: 7.7 Consensus size: 84
1557324 ATTCCTACCG
* * *
1557334 AACCAGATCAGATAACTCAAAGAACATTTCCAAAAGATGCTATTGAACACATTATTCTTCCAAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
* *
1557399 TCAATGATTAG-TCTTGTTC
66 TCAATGATTGGTTC-TGTCC
1557418 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
*
1557483 TCAATGATTAGTTCTGTCC
66 TCAATGATTGGTTCTGTCC
1557502 AACCAGATCAGATAACTCAAAGAACACTTCCAG-AGATGCTATTGAGCACATTATTCTTCCAAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
*
1557566 TCAATGATTAGTTCTGTCC
66 TCAATGATTGGTTCTGTCC
1557585 AACCAGATCAGAT-ACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
1557649 TCAATGATTGG-TCTTGTCC
66 TCAATGATTGGTTC-TGTCC
1557668 AACCAGATCAGATAACTCAAAGAACACTTCCAG-A-ATGCTATTGAGCACATTA-TCTTCCAAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
1557730 TCAATGATTGGTTCTGTCC
66 TCAATGATTGGTTCTGTCC
1557749 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCC-AAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
1557813 TCAATGATTGGTTCTGTCC
66 TCAATGATTGGTTCTGTCC
*
1557832 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTA-TATT-C-AAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
1557894 TCAATGATTGGTTCTGTCC
66 TCAATGATTGGTTCTGTCC
1557913 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTAT
1557968 ATTTGTTCCA
Statistics
Matches: 535, Mismatches: 6, Indels: 20
0.95 0.01 0.04
Matches are distributed among these distances:
81 136 0.25
82 45 0.08
83 217 0.41
84 135 0.25
85 2 0.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (84 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTATTCTTCCAAAT
TCAATGATTGGTTCTGTCC
Done.