genome.fa.s1163.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001163.1 Hibiscus syriacus cultivar Beakdansim tig00002318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88318

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2758--2822	18	3.6	18	82	0	85	35	7	43	13	1.73
3278--3303	3	8.7	3	100	0	52	34	0	0	65	0.93
8683--8786	53	2.0	53	98	0	199	27	18	21	32	1.96
12303--12371	30	2.2	31	82	10	79	44	0	1	53	1.09
12455--12502	20	2.4	19	80	13	53	54	4	2	39	1.32
21068--21183	56	2.1	55	92	6	198	21	27	25	25	1.99
21967--22011	7	6.7	7	80	10	58	0	28	0	71	0.87
21967--22011	20	2.2	20	100	0	90	0	28	0	71	0.87
24724--24757	2	17.0	2	100	0	68	50	0	0	50	1.00
26059--26099	3	13.7	3	100	0	82	34	0	0	65	0.93
31491--31515	13	1.9	13	100	0	50	16	48	16	20	1.82
31508--31551	15	2.8	15	86	6	61	15	34	25	25	1.95
34022--34112	24	3.8	24	85	2	121	25	17	19	37	1.94
34022--34112	47	1.9	48	88	2	139	25	17	19	37	1.94
36227--36267	13	3.2	13	85	0	55	19	39	21	19	1.93
38781--38862	24	3.5	24	84	3	103	26	17	19	36	1.94
48903--48951	26	1.9	26	84	12	66	20	6	16	57	1.60
51729--51942	106	2.0	107	97	2	405	28	28	19	22	1.98
53308--53458	59	2.5	61	88	5	209	37	21	19	21	1.94
53308--53458	31	5.0	30	88	4	207	37	21	19	21	1.94
54329--54404	20	3.7	20	94	3	125	19	26	25	28	1.99
55297--55339	17	2.6	16	78	7	50	39	25	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57932--57975	23	1.9	23	85	0	61	59	11	2	27	1.44
58216--58365	30	5.0	30	87	9	209	38	22	19	20	1.94
59155--59198	22	2.0	23	86	8	65	13	22	34	29	1.93
59234--59292	20	2.8	21	82	7	75	22	23	22	32	1.98
64971--65010	19	2.1	19	85	0	53	42	12	2	42	1.56
66936--66979	15	2.6	17	79	17	56	29	36	20	13	1.91
66948--66981	15	2.3	15	100	0	68	35	32	17	14	1.91
67508--67663	64	2.5	62	79	9	172	26	18	20	34	1.96
70801--70962	64	2.5	64	77	11	163	26	19	17	36	1.94
73751--73907	21	7.6	21	78	9	171	31	23	22	22	1.98
73751--73926	41	4.3	41	84	7	239	32	22	22	23	1.98
73751--73907	83	1.9	83	93	2	271	31	23	22	22	1.98
73922--74050	21	6.3	21	75	12	124	20	19	27	32	1.97
73940--74053	40	2.8	39	85	7	165	21	20	25	33	1.97
74125--74362	128	1.8	130	94	2	426	26	32	27	12	1.93
74908--75089	42	4.4	42	79	8	180	35	24	18	21	1.96
74912--74981	19	3.5	19	71	11	59	38	22	18	20	1.93
74933--75103	21	8.3	21	78	8	172	32	26	18	22	1.97
75118--75337	21	10.6	21	80	9	245	23	22	23	30	1.99
75099--75337	62	3.8	63	82	10	260	23	22	23	31	1.98
75118--75321	83	2.5	83	95	0	372	23	22	23	31	1.98

Tables:   1

The End!