Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001164.1 Hibiscus syriacus cultivar Beakdansim tig00002320_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67943

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7454--7548
43
2.3
43
83
3
122
40
16
11
31
1.85
7519--7865
41
8.4
41
82
4
358
35
19
18
27
1.95
7539--7845
165
1.9
166
84
4
424
37
18
17
26
1.93
9108--9285
41
4.4
41
82
4
200
32
16
14
36
1.90
9152--9446
41
7.1
41
72
14
171
30
17
16
35
1.93
13446--13848
41
9.8
42
74
12
180
30
19
19
30
1.97
13472--13848
82
4.6
82
75
10
286
28
19
19
31
1.97
13459--13616
42
3.8
41
69
20
96
29
18
20
30
1.97
13667--13848
41
4.4
41
83
3
197
26
20
19
34
1.96
13445--13848
123
3.3
125
75
7
362
29
20
19
30
1.97
18515--18798
42
6.7
43
81
9
269
27
25
19
27
1.99
18515--18798
85
3.3
82
80
8
291
27
25
19
27
1.99
18515--18842
86
3.8
82
78
10
282
26
25
19
28
1.99
22878--22930
26
2.0
26
100
0
106
15
26
7
50
1.70
27091--27115
7
3.6
7
100
0
50
32
28
0
40
1.57
40024--40349
41
7.9
41
95
1
562
22
23
24
29
1.99
40024--40349
124
2.6
124
97
0
600
22
23
24
29
1.99
41130--41156
6
4.5
6
100
0
54
0
14
51
33
1.43
41236--41305
20
3.5
20
70
24
65
37
20
21
21
1.95
41232--41364
41
3.2
41
83
1
158
35
23
20
21
1.96
41674--41712
20
1.9
21
89
5
62
69
2
7
20
1.26
41673--41718
20
2.2
21
80
3
58
71
2
6
19
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43023--43047
2
12.5
2
100
0
50
52
0
0
48
1.00
52743--52781
20
1.9
21
89
5
62
69
2
7
20
1.26
52742--52787
20
2.2
21
80
3
58
71
2
6
19
1.18
52988--53032
19
2.4
20
79
20
53
68
4
0
26
1.08
54072--54111
2
21.0
2
90
10
66
52
0
0
47
1.00
56297--56371
38
2.0
37
87
5
107
48
0
4
48
1.20

Tables:   1

The End!