genome.fa.s1165.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001165.1 Hibiscus syriacus cultivar Beakdansim tig00002322_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60767

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2260--2293	18	1.9	17	94	5	59	58	5	17	17	1.57
2362--2412	22	2.3	22	86	0	75	31	21	21	25	1.98
3496--3559	23	2.8	22	79	9	65	29	23	25	21	1.99
3579--3786	103	2.0	103	93	0	353	36	23	13	26	1.92
5438--5473	12	3.0	12	100	0	72	50	16	0	33	1.46
11362--11410	24	2.1	23	85	11	64	32	2	24	40	1.67
11526--12059	170	3.1	169	84	3	680	30	17	21	31	1.96
13592--13641	24	2.0	25	88	3	75	72	8	2	18	1.19
14790--14837	20	2.6	18	76	20	53	33	2	4	60	1.27
15379--15491	55	2.1	55	84	0	145	28	23	17	30	1.97
15539--15567	2	14.5	2	100	0	58	48	0	0	51	1.00
19972--20004	17	2.0	17	88	5	50	33	3	6	57	1.38
20044--20068	12	2.1	12	100	0	50	24	8	0	68	1.16
25997--26027	14	2.2	14	100	0	62	19	16	6	58	1.59
27950--28075	60	2.1	60	98	0	243	21	6	19	53	1.67
43737--43774	12	3.2	12	84	0	58	13	18	44	23	1.85
44104--44270	20	8.3	20	80	6	149	27	23	19	28	1.99
44164--44271	20	5.4	20	89	0	153	26	25	20	27	1.99
45092--45145	24	2.2	24	93	0	90	20	18	20	40	1.91
47605--47769	20	8.9	20	68	15	84	34	21	18	24	1.96
47633--47726	34	2.8	34	90	0	143	39	24	14	21	1.91
47809--47866	20	2.9	21	77	10	68	12	15	27	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50003--50086	20	4.4	18	86	8	105	38	27	16	17	1.92
50014--50087	20	3.8	20	91	3	107	37	25	17	18	1.93
50130--50177	20	2.4	20	96	0	87	14	18	27	39	1.90
50720--50768	18	2.7	18	93	0	89	14	12	44	28	1.81
51704--51820	57	2.1	57	100	0	234	29	21	20	28	1.98
52147--52220	20	3.7	20	87	0	94	44	22	16	16	1.86
52605--52647	22	2.0	22	90	0	68	20	16	39	23	1.92
52824--52917	20	4.7	20	91	0	143	27	18	25	28	1.98
52906--52956	20	2.5	20	100	0	102	23	21	17	37	1.94
52946--53019	21	3.5	21	90	0	112	37	18	21	21	1.94
53516--53570	27	2.0	27	89	0	83	45	9	7	38	1.64
53768--53792	13	1.9	13	100	0	50	44	0	0	56	0.99
54758--54796	20	1.9	21	89	5	62	41	12	12	33	1.82
60408--60476	35	1.9	36	91	2	113	15	39	8	36	1.79

Tables:   1

The End!