genome.fa.s1166.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001166.1 Hibiscus syriacus cultivar Beakdansim tig00002326_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74128

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643--727	33	2.4	33	86	9	107	32	15	1	50	1.51
1421--1490	22	3.2	21	73	18	63	67	5	10	17	1.39
1400--1490	44	2.0	45	87	6	132	68	6	7	17	1.36
1431--1501	21	3.2	21	72	16	63	66	4	8	21	1.36
2658--2704	21	2.2	21	85	7	60	61	0	2	36	1.08
4210--4306	32	2.9	34	83	7	135	37	20	12	29	1.89
5429--5481	13	4.2	13	82	17	67	3	15	3	77	1.06
5428--5479	27	2.0	25	92	7	86	5	15	3	75	1.14
12445--12550	22	4.8	22	92	0	185	30	21	25	22	1.99
12778--12811	12	2.8	12	81	0	50	29	0	26	44	1.55
15029--15063	17	2.1	17	88	0	52	60	0	0	40	0.97
15743--15780	20	1.9	20	88	0	58	21	26	10	42	1.85
24819--24953	67	2.0	67	100	0	270	30	19	16	34	1.94
25283--25318	17	2.1	17	89	0	54	58	2	2	36	1.27
26894--26923	15	2.0	15	93	0	51	23	13	23	40	1.90
34186--34258	36	2.0	36	82	10	87	43	0	5	50	1.25
34179--34263	37	2.3	36	76	17	84	43	0	4	51	1.22
35297--35348	17	3.2	17	75	10	54	51	13	1	32	1.52
37555--37639	33	2.6	33	84	1	118	11	8	37	42	1.72
37776--37848	38	1.9	38	94	2	130	12	9	36	41	1.75
38429--38473	18	2.6	18	93	6	76	28	31	6	33	1.83
38631--38734	38	2.7	38	77	12	97	41	13	0	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39706--39754	2	24.5	2	100	0	98	48	0	0	51	1.00
39664--39714	25	2.0	26	85	7	70	25	3	3	66	1.26
39734--39868	47	3.1	43	80	18	145	33	2	0	62	1.15
39805--39934	4	33.2	4	73	17	53	23	2	0	73	0.99
39736--39869	43	3.0	43	76	14	130	32	2	0	63	1.15
39857--39947	25	3.7	24	78	10	85	18	4	1	75	1.02
43068--43102	13	2.7	13	87	12	54	77	2	17	2	1.02
43268--43589	106	3.0	107	87	2	445	34	23	18	22	1.97
43850--44025	87	2.0	87	91	0	280	34	18	11	35	1.87
43934--44173	102	2.4	102	90	0	372	32	19	11	36	1.87
44074--44146	37	2.0	37	91	0	119	27	19	12	41	1.87
44211--44313	36	2.8	37	89	2	163	29	20	12	37	1.89
44219--44408	100	1.9	100	82	6	242	27	17	12	41	1.86
44326--44442	36	3.2	36	78	8	130	25	18	14	41	1.89
45666--45808	44	3.4	42	76	13	143	32	2	0	64	1.13
45669--45806	42	3.4	39	77	17	120	31	2	0	64	1.13
45794--45832	2	19.5	2	100	0	78	48	0	0	51	1.00
45881--45932	20	2.5	20	84	3	59	15	9	1	73	1.18
45895--45939	16	2.8	16	79	0	54	17	8	0	73	1.08
55335--55392	31	1.9	31	85	3	82	27	15	27	29	1.96
59512--59544	17	1.9	18	88	11	52	54	0	18	27	1.44
69253--69283	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69514--69554	11	3.6	11	80	6	55	24	21	0	53	1.46
69505--69557	23	2.3	23	96	0	97	18	22	0	58	1.39
69776--69814	15	2.6	15	100	0	78	53	0	41	5	1.23
70419--70651	114	2.0	114	99	0	457	45	11	12	31	1.77
71890--71947	29	2.0	29	93	0	98	31	18	18	31	1.96
72391--72447	20	2.9	18	75	14	51	31	14	29	24	1.94

Tables:   1

The End!