genome.fa.s1167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001167.1 Hibiscus syriacus cultivar Beakdansim tig00002329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153125

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126--490	92	4.1	88	89	6	504	21	12	20	45	1.84
595--664	19	4.0	18	71	17	67	48	21	21	8	1.76
648--678	14	2.1	14	94	5	53	51	25	16	6	1.68
596--679	33	2.5	33	76	1	96	48	23	19	8	1.75
687--754	27	2.3	29	87	9	95	11	23	20	44	1.84
710--786	17	4.9	15	73	20	61	7	23	23	45	1.78
709--804	19	5.8	18	73	22	70	8	22	22	45	1.79
709--804	32	3.0	33	89	4	153	8	22	22	45	1.79
1272--1338	21	3.2	21	66	6	55	23	35	20	19	1.95
1250--1338	42	2.1	42	81	8	101	23	35	20	20	1.95
2658--2690	14	2.4	14	94	0	57	36	0	21	42	1.53
2805--2893	33	2.7	33	87	0	115	49	19	17	13	1.79
2863--2908	19	2.4	19	92	0	74	45	23	15	15	1.84
2908--2999	31	2.8	33	85	8	127	10	21	19	47	1.80
2929--2981	14	3.6	14	75	20	54	11	24	20	43	1.85
5430--5480	22	2.3	22	89	3	75	43	15	19	21	1.88
6337--6499	20	8.0	21	82	4	174	30	18	19	31	1.96
6337--6488	41	3.8	41	83	3	166	28	18	19	33	1.95
7275--7326	24	2.2	24	100	0	104	36	26	11	25	1.90
10439--10490	20	2.5	22	75	15	65	32	19	17	30	1.95
15634--15689	21	2.7	20	78	13	60	66	3	1	28	1.19
17926--17982	2	28.5	2	100	0	114	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25377--25412	2	18.0	2	100	0	72	50	0	0	50	1.00
26125--26177	18	3.0	16	76	17	52	26	11	3	58	1.49
27573--27633	29	2.1	29	81	0	68	21	11	11	55	1.66
29780--29922	70	2.0	70	97	0	268	30	6	11	51	1.63
29859--30180	116	2.7	118	93	3	551	32	10	6	50	1.63
29948--30131	58	3.2	56	62	13	129	30	10	4	53	1.56
30263--30692	20	21.2	20	79	9	335	37	25	19	17	1.93
30346--30689	60	5.7	59	84	8	371	36	26	20	17	1.94
30788--30843	6	9.5	6	98	1	105	32	51	16	0	1.44
31340--31414	6	12.7	6	98	1	143	0	17	50	32	1.46
31509--31942	20	21.2	20	79	11	445	16	19	25	38	1.92
31518--31859	102	3.3	100	88	6	422	16	19	26	37	1.93
31744--31880	42	3.3	40	90	8	136	17	18	27	36	1.94
33167--33255	29	3.1	29	98	0	169	56	5	16	21	1.61
36542--36612	34	2.2	32	82	5	79	22	26	15	35	1.94
36895--36936	21	2.0	21	95	0	75	26	28	21	23	1.99
37046--37093	19	2.5	19	89	0	69	35	12	14	37	1.84
37061--37108	19	2.6	18	83	9	60	39	12	8	39	1.73
37173--37232	29	2.0	31	90	6	97	41	16	6	35	1.75
40966--41345	187	2.0	185	93	1	643	41	2	8	46	1.50
41745--41783	20	2.0	20	94	0	69	25	20	15	38	1.92
42586--42628	22	2.0	22	95	0	77	34	9	20	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43896--43952	29	2.0	29	92	0	96	36	3	7	52	1.46
46424--46464	21	2.0	21	85	0	55	41	17	0	41	1.49
46812--46850	2	19.5	2	100	0	78	48	0	0	51	1.00
50200--50229	15	1.9	15	93	6	51	56	0	0	43	0.99
62223--62272	27	1.9	25	84	8	64	48	4	2	46	1.32
63546--63587	22	1.9	22	85	0	57	35	0	0	64	0.94
63659--63696	3	12.7	3	94	0	67	31	0	2	65	1.06
65071--65134	18	3.6	18	85	8	94	26	21	18	32	1.97
77888--77920	17	1.9	17	88	11	50	27	0	3	69	1.03
86374--86430	17	3.0	20	77	15	66	50	7	0	42	1.29
92721--92885	54	3.1	54	100	0	330	44	20	3	32	1.69
92902--92962	20	3.0	21	79	16	65	59	3	1	36	1.24
92933--93022	46	2.0	46	93	0	153	38	4	7	48	1.52
93347--93503	60	2.6	60	79	2	172	33	10	14	41	1.80
94735--94784	20	2.4	22	80	12	61	38	2	24	36	1.67
94736--94795	27	2.2	26	83	13	77	38	3	18	40	1.67
96497--96550	19	3.2	17	73	16	51	51	1	1	44	1.22
99551--99594	14	3.1	14	83	9	54	31	2	0	65	1.05
99550--99613	25	2.6	26	80	7	71	35	3	0	60	1.12
99715--99752	18	2.1	18	85	9	51	18	5	0	76	0.97
99947--99986	19	2.3	16	84	16	53	17	2	2	77	0.99
99948--99987	17	2.2	19	91	8	66	15	2	2	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99967--100025	26	2.3	26	82	5	75	11	5	6	76	1.14
103053--103097	24	1.9	24	95	4	83	77	0	20	2	0.87
103050--103100	11	4.5	11	88	11	77	80	0	17	1	0.81
103059--103101	13	3.5	13	75	12	54	81	0	16	2	0.79
104229--104340	31	3.5	32	85	6	138	29	14	19	36	1.91
105214--105332	36	3.3	36	80	2	130	26	18	14	40	1.89
105290--105463	65	2.6	65	84	5	215	33	20	9	36	1.85
105290--105462	67	2.6	67	86	3	190	32	20	9	36	1.85
106172--106435	110	2.5	106	78	11	297	32	24	19	23	1.98
107591--107624	15	2.2	16	89	5	52	35	0	0	64	0.94
107643--107682	14	2.7	14	84	7	53	32	2	0	65	1.06
107809--107859	16	3.2	17	78	10	54	23	3	0	72	1.01
107804--107859	17	3.2	17	78	14	53	23	3	0	73	0.99
108053--108088	17	2.1	17	89	5	54	16	2	2	77	1.00
108062--108113	20	2.6	20	84	6	61	13	1	7	76	1.07
109586--109650	21	3.1	21	93	0	112	16	40	27	15	1.89
109998--110067	34	2.1	32	89	5	104	31	15	31	21	1.95
110790--110835	24	2.0	24	87	12	69	47	6	6	39	1.55
110813--110860	19	2.5	20	82	3	62	52	6	12	29	1.63
112134--112199	23	3.0	23	84	8	75	19	42	24	13	1.87
112134--112199	21	3.0	21	81	12	80	19	42	24	13	1.87
113311--113351	16	2.6	16	84	7	57	60	17	9	12	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113735--113880	32	4.6	32	84	3	138	34	15	19	30	1.93
113732--113876	64	2.3	64	80	7	152	33	16	20	29	1.94
116388--116419	16	2.0	16	100	0	64	62	18	12	6	1.50
116484--116557	10	7.6	10	69	22	59	58	21	10	9	1.60
116488--116552	16	4.1	16	95	0	121	56	23	12	7	1.61
117576--117637	24	2.6	24	92	0	88	54	20	12	11	1.68
117589--117636	10	4.4	10	78	19	51	54	25	12	8	1.65
117596--117637	14	3.3	14	75	25	56	52	26	14	7	1.67
118397--118472	32	2.4	32	90	0	125	43	14	9	32	1.77
123915--124013	49	2.0	49	98	0	189	26	14	10	49	1.74
126183--126211	13	2.1	14	93	6	51	44	13	3	37	1.61
127664--127747	40	2.1	40	100	0	168	32	21	4	41	1.74
135177--135290	53	2.2	52	93	1	192	28	22	6	42	1.78
138169--138229	30	2.0	32	83	6	81	45	1	4	47	1.34
138795--138862	7	9.3	7	72	15	50	35	0	1	63	1.04
138785--138856	8	9.0	8	72	17	60	34	0	1	63	1.03
143522--143546	12	2.1	12	100	0	50	48	8	16	28	1.74
143896--143992	42	2.5	40	78	14	105	49	3	0	47	1.17
143919--144003	42	2.0	41	84	6	109	49	4	0	45	1.23
145742--145798	22	2.6	22	80	5	62	19	15	24	40	1.90
149522--149560	2	19.0	2	94	5	69	48	0	2	48	1.15
150899--150982	2	44.0	2	84	9	113	53	0	2	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151209--151248	2	20.0	2	100	0	80	50	0	0	50	1.00
151437--151468	2	16.0	2	100	0	64	50	0	0	50	1.00
151491--151855	197	1.9	197	80	6	436	40	13	12	33	1.82

Tables:   1

The End!