genome.fa.s1168.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001168.1 Hibiscus syriacus cultivar Beakdansim tig00002330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87190

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1494--1528	13	2.6	14	90	4	54	28	0	22	48	1.51
1644--1712	19	3.8	19	82	17	94	47	17	21	13	1.81
1731--1787	20	2.9	20	92	2	89	17	22	21	38	1.93
3046--3070	12	2.1	12	100	0	50	72	0	28	0	0.86
5346--5472	33	3.8	33	86	4	184	42	18	22	16	1.89
5347--5479	66	2.0	66	94	0	230	41	18	22	18	1.90
5472--5514	20	2.2	20	87	4	61	16	18	23	41	1.89
5500--5533	14	2.4	14	85	0	50	8	23	20	47	1.78
5655--5691	14	2.6	14	91	0	65	45	24	0	29	1.53
7048--7114	21	3.2	21	68	4	55	19	20	35	23	1.95
7048--7170	42	2.9	41	80	7	113	22	17	36	22	1.95
9171--9355	19	10.1	19	75	14	165	43	21	22	12	1.86
9196--9294	33	3.0	33	87	1	135	39	25	23	12	1.89
9266--9355	39	2.3	38	94	1	153	46	22	20	11	1.81
9351--9417	19	3.5	19	85	2	89	10	16	25	47	1.78
9936--10049	20	5.7	20	84	6	122	23	19	25	31	1.98
9936--10052	61	1.9	61	87	0	171	23	18	24	33	1.97
9936--10070	61	2.2	61	82	2	164	22	20	24	32	1.98
10120--10160	21	2.0	21	85	0	55	34	31	17	17	1.93
17511--17580	33	2.1	34	94	2	124	35	21	7	35	1.81
18135--18166	2	16.0	2	100	0	64	50	0	0	50	1.00
19004--19042	19	2.1	19	100	0	78	53	10	15	20	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19856--19886	14	2.2	14	100	0	62	51	38	0	9	1.35
36167--36194	2	14.0	2	100	0	56	50	0	0	50	1.00
36436--36494	2	29.5	2	100	0	118	49	0	0	50	1.00
36685--36721	18	2.2	17	90	9	58	56	0	0	43	0.99
38986--39021	15	2.3	16	85	9	56	41	13	16	27	1.87
39125--39226	23	4.4	23	92	2	161	23	17	21	37	1.94
39347--39383	19	1.9	19	88	0	56	56	2	8	32	1.43
40343--40383	8	5.4	8	80	11	50	56	0	2	41	1.13
41245--41320	7	10.9	7	100	0	152	42	0	43	14	1.45
45437--45497	26	2.3	26	94	0	104	11	32	9	45	1.73
46163--46245	40	2.1	38	82	4	94	37	24	14	24	1.92
46242--46275	17	2.0	17	88	0	50	26	29	11	32	1.92
48215--48245	16	1.9	16	93	0	53	19	9	3	67	1.33
48247--48282	16	2.2	16	90	0	54	25	16	5	52	1.65
52217--52267	15	3.6	14	86	5	68	64	7	27	0	1.21
54942--55219	103	2.7	104	83	5	341	35	16	11	36	1.85
54942--55261	104	3.1	103	80	7	310	35	16	11	36	1.85
55168--55362	66	2.9	67	85	1	275	29	17	13	38	1.89
55179--55295	36	3.4	35	72	14	109	27	18	13	40	1.89
55284--55449	88	1.9	87	87	1	242	29	19	13	37	1.90
55367--55479	30	3.6	30	68	19	77	27	19	14	38	1.90
55372--55498	66	1.9	67	88	4	195	26	18	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55372--55534	66	2.5	66	83	7	163	28	17	14	39	1.89
55707--55973	139	1.9	139	83	0	345	31	27	15	25	1.96
55707--56003	139	2.1	139	82	0	342	31	28	14	25	1.95
55960--56046	40	2.2	40	95	0	156	34	28	10	26	1.89
55975--56065	40	2.3	40	84	3	121	36	29	9	24	1.88
59654--59796	77	1.9	77	89	0	223	42	4	9	43	1.57
59822--59860	14	2.9	13	79	20	53	41	10	0	48	1.37
59822--59858	13	2.7	14	84	15	51	43	8	0	48	1.32
60081--60134	2	27.0	2	100	0	108	50	0	0	50	1.00
60233--60301	33	2.0	33	83	8	84	46	1	15	36	1.56
67792--67861	23	3.1	23	65	19	65	34	10	25	30	1.89
67754--68066	45	7.0	44	87	4	430	36	9	23	30	1.87
74120--74177	22	2.8	20	77	12	62	29	12	31	27	1.92
74702--74942	45	5.4	45	94	1	412	34	10	23	30	1.89
75836--75878	19	2.3	19	84	15	54	72	0	13	13	1.13
79504--79654	77	2.0	77	94	0	266	34	17	17	30	1.93
80240--80284	21	2.1	21	83	0	54	31	15	24	28	1.96

Tables:   1

The End!