Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001169.1 Hibiscus syriacus cultivar Beakdansim tig00002331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60247

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2733--2816
22
3.8
22
93
1
123
19
26
30
23
1.98
6509--6551
21
2.0
22
86
13
63
34
11
4
48
1.60
10088--10118
16
1.9
16
93
0
53
19
0
12
67
1.22
10438--10473
18
2.0
18
94
0
63
19
0
22
58
1.40
12999--13050
19
2.7
19
96
0
95
30
17
28
23
1.97
16881--16961
24
3.5
24
88
6
116
29
19
25
24
1.99
18047--18074
2
14.0
2
100
0
56
50
0
0
50
1.00
18290--18352
23
2.8
23
92
2
101
31
11
25
31
1.91
18566--18628
23
2.7
23
82
0
81
17
25
25
31
1.97
22522--22565
23
1.9
23
90
0
70
18
25
25
31
1.97
23894--23948
24
2.3
24
83
0
65
36
16
18
29
1.92
24889--24944
20
2.8
20
94
0
94
32
8
21
37
1.84
24870--24976
40
2.7
40
77
8
110
29
11
23
35
1.90
24949--25025
21
3.6
22
79
17
83
24
11
27
36
1.90
24869--25025
20
7.7
21
79
8
85
28
10
24
36
1.89
26365--26398
16
2.1
16
94
0
59
32
8
26
32
1.87
33601--33834
85
2.7
85
84
2
299
30
19
23
26
1.98
33601--33844
128
1.9
128
84
5
323
31
19
23
25
1.98
33601--33833
43
5.5
43
83
2
283
30
19
24
26
1.98
37932--38079
74
2.0
73
88
3
217
29
16
20
33
1.95
40127--40195
27
2.6
27
93
2
122
34
7
7
50
1.58
41318--41359
22
2.0
22
90
4
68
52
2
9
35
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49930--50048
44
2.7
44
98
0
229
28
3
23
44
1.69
50200--50276
30
2.5
31
97
2
147
28
7
7
55
1.56
52303--52393
39
2.3
39
86
0
119
31
19
27
20
1.97
54856--54910
12
4.6
12
81
0
65
25
14
41
18
1.88
55021--55056
17
2.2
17
90
5
56
47
0
0
52
1.00
55097--55132
15
2.4
15
90
0
54
41
2
0
55
1.14
55358--55398
16
2.5
17
80
11
50
43
0
0
56
0.99

Tables:   1

The End!