Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000117.1 Hibiscus syriacus cultivar Beakdansim tig00000212_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63423

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16555--16642
33
2.7
33
92
3
133
21
9
44
25
1.81
16555--16632
33
2.4
33
97
2
149
21
7
46
24
1.77
20178--20273
48
2.0
48
95
0
174
33
25
10
31
1.89
22644--22672
13
2.1
14
93
6
51
31
6
0
62
1.22
24336--24360
10
2.5
10
100
0
50
8
8
24
60
1.52
28179--28257
39
1.9
39
85
7
104
39
10
15
35
1.81
28499--28585
7
12.4
7
73
4
77
40
40
0
19
1.52
29812--29865
11
4.8
11
81
4
63
27
20
25
25
1.99
30084--30157
10
7.6
10
66
22
50
10
9
20
59
1.58
30089--30153
16
4.1
16
89
0
103
9
10
21
58
1.59
30168--30241
31
2.4
31
97
0
139
47
12
10
29
1.75
30853--30970
20
5.9
20
81
0
137
25
23
24
26
2.00
30844--30972
60
2.1
60
82
2
159
24
24
23
28
1.99
31571--31691
20
6.5
19
81
13
101
13
18
23
44
1.85
31655--31698
20
2.2
20
91
0
70
11
13
20
54
1.69
33182--33249
20
3.4
20
91
0
109
36
26
19
17
1.94
33292--33347
20
2.8
20
100
0
112
16
19
25
39
1.91
33292--33358
20
3.5
19
93
4
100
14
19
26
38
1.91
33848--33944
21
4.6
21
75
3
88
22
36
18
22
1.95
35356--35417
14
4.3
14
73
6
52
38
1
14
45
1.55
36273--36340
20
3.4
20
91
0
109
36
26
19
17
1.94
36383--36438
20
2.8
20
100
0
112
16
19
25
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36383--36449
20
3.5
19
93
4
100
14
19
26
38
1.91
36938--37034
21
4.6
21
75
3
88
22
36
18
22
1.95
38444--38505
14
4.3
14
73
6
52
38
1
14
45
1.55
38700--38864
20
8.9
20
71
17
131
25
17
23
33
1.96
38666--38802
54
2.5
54
86
2
186
23
18
22
35
1.95
38700--38864
74
2.2
74
86
6
219
25
17
23
33
1.96
39163--39197
18
1.9
18
94
0
61
20
2
22
54
1.58
41692--41758
20
3.3
20
89
0
98
28
20
23
26
1.99
43668--43708
18
2.2
20
86
8
59
41
7
12
39
1.70
55087--55141
19
2.9
19
76
12
60
20
20
9
50
1.74
57208--57278
36
2.0
36
88
0
106
35
26
15
22
1.94
59200--59254
19
2.9
19
82
12
69
18
20
10
50
1.76
60372--60431
15
4.1
14
78
19
61
68
0
5
26
1.10
61707--61768
15
4.3
15
73
21
51
56
0
0
43
0.99
61928--62258
76
4.4
76
92
2
526
35
21
18
25
1.96
62382--62666
76
3.8
76
96
1
522
35
22
19
22
1.96

Tables:   1

The End!