Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001170.1 Hibiscus syriacus cultivar Beakdansim tig00002333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63420

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1654--1687
12
2.8
12
81
0
50
44
26
0
29
1.55
1912--2017
22
4.8
22
94
0
185
22
24
22
30
1.99
1912--2023
44
2.5
44
95
0
206
22
24
22
31
1.99
5498--5589
44
2.1
44
84
8
116
17
6
6
69
1.32
5564--5611
20
2.4
19
82
6
51
16
2
4
77
1.03
5498--5603
45
2.4
46
77
16
109
16
6
5
71
1.26
8652--8711
27
2.3
27
85
8
79
73
3
18
5
1.16
8650--8698
26
1.9
25
84
12
64
75
2
18
4
1.06
8641--8711
27
2.7
26
78
16
76
74
4
16
4
1.13
9830--9944
31
3.6
31
81
4
122
28
13
22
34
1.93
9837--9930
32
2.9
32
85
3
127
29
12
21
36
1.91
12555--12626
22
3.3
21
72
16
65
20
8
4
66
1.35
12566--12657
44
2.0
46
87
8
136
17
7
6
68
1.35
15068--15120
3
18.7
3
88
11
85
28
0
0
71
0.86
20362--20401
20
2.0
20
95
0
71
10
22
5
62
1.46
20487--20534
2
24.0
2
91
0
78
45
4
0
50
1.21
25993--26199
105
2.0
107
85
3
285
21
25
23
29
1.99
25991--26199
53
3.9
53
86
2
269
22
25
22
29
1.99
35463--35515
27
2.0
27
92
0
88
50
15
9
24
1.73
43184--43324
64
2.2
63
78
6
142
32
15
24
27
1.95
43312--43369
20
2.6
22
75
20
59
32
20
20
25
1.97
44891--44930
19
2.1
19
100
0
80
42
0
10
47
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47361--47501
64
2.2
63
83
7
178
31
17
24
26
1.97
47489--47546
20
2.7
20
84
10
71
32
18
22
25
1.97
60868--60942
19
3.9
19
67
11
55
45
5
17
32
1.71
60966--61035
13
5.5
13
75
10
65
54
1
20
24
1.53

Tables:   1

The End!