Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001172.1 Hibiscus syriacus cultivar Beakdansim tig00002335_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55367

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1158--1200
18
2.5
17
81
7
50
53
4
4
37
1.43
1302--1368
21
3.3
19
74
13
71
20
20
20
37
1.95
1310--1376
21
3.3
19
76
15
80
25
22
19
32
1.97
2252--2400
40
3.8
40
81
12
159
35
22
18
23
1.96
2272--2386
38
2.9
39
82
8
119
37
20
18
24
1.94
2211--2411
99
2.0
99
82
6
246
34
22
19
22
1.96
2207--2425
21
10.8
21
70
15
115
34
22
20
22
1.96
8832--8874
22
2.0
22
85
0
59
32
25
16
25
1.96
11159--11190
3
10.7
3
100
0
64
31
0
0
68
0.90
15231--15264
12
2.8
12
86
0
50
32
0
2
64
1.08
15740--15839
29
3.5
27
85
11
128
40
16
1
43
1.54
27001--27059
31
1.9
31
89
0
91
44
3
8
44
1.51
27083--27166
22
3.8
22
82
3
105
47
9
1
41
1.44
30422--30810
43
9.1
43
90
2
559
18
25
24
31
1.97
30422--30810
128
3.0
128
90
3
584
18
25
24
31
1.97
32720--32850
22
6.0
22
88
3
201
49
10
0
38
1.43
32722--32850
66
2.0
66
93
3
224
48
10
0
39
1.44
32837--32876
12
3.6
12
77
16
50
52
0
2
45
1.14
32729--32867
66
2.1
66
86
6
192
50
8
1
39
1.42
37603--37732
32
4.0
32
82
9
167
39
9
10
40
1.72
37606--37729
65
1.9
65
87
9
182
38
9
10
41
1.72
40535--40619
3
28.0
3
84
7
109
67
3
0
29
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40791--41149
129
2.7
131
82
5
397
27
17
28
25
1.97
41243--41339
36
2.7
36
84
4
108
39
12
17
30
1.87
41666--41724
31
1.9
31
86
3
84
40
15
13
30
1.86
41762--41854
36
2.6
35
83
6
116
41
11
18
27
1.85
41992--42053
21
3.1
21
62
17
51
35
12
20
30
1.91
41994--42094
38
2.7
38
83
4
107
33
13
17
34
1.90
42413--42450
4
9.5
4
86
11
51
28
0
21
50
1.49
42717--42781
24
2.8
24
75
15
64
52
4
10
32
1.57
43638--43685
11
4.1
11
80
15
51
4
14
4
77
1.08
45700--45760
32
1.9
32
93
3
106
59
11
16
13
1.62
49251--49332
3
27.0
3
84
7
103
67
3
0
29
1.08
51853--51973
32
3.7
32
76
5
109
27
27
28
17
1.98

Tables:   1

The End!