Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001173.1 Hibiscus syriacus cultivar Beakdansim tig00002337_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131951

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
653--701
21
2.4
21
83
10
57
18
16
12
53
1.73
815--858
19
2.3
18
85
14
61
18
13
11
56
1.66
1961--2000
16
2.5
15
84
11
53
27
0
0
72
0.85
1954--1999
17
2.7
18
83
16
62
30
0
0
69
0.89
1967--2008
15
2.7
15
79
13
50
33
0
0
66
0.92
4770--4824
3
18.7
3
84
3
76
36
0
3
60
1.15
5970--6069
50
2.0
50
98
0
191
32
3
12
53
1.53
6052--6111
2
30.0
2
100
0
120
50
0
0
50
1.00
6456--6592
68
2.0
68
97
0
256
32
4
11
51
1.58
18011--18105
7
12.5
8
76
20
89
76
0
12
10
1.01
18011--18114
24
4.6
23
79
13
94
75
0
13
10
1.03
19120--19287
92
1.9
90
92
3
284
38
14
22
23
1.92
19339--19593
105
2.4
105
84
2
323
40
17
18
24
1.91
19759--19822
3
21.7
3
90
3
103
35
0
1
62
1.05
20846--20943
49
2.0
49
92
3
164
25
10
14
50
1.74
20962--21085
65
1.9
65
98
0
239
35
2
10
51
1.49
20991--21085
2
48.0
2
73
10
61
40
1
7
51
1.37
21430--21566
68
2.0
68
97
0
256
32
4
11
51
1.58
22676--22722
20
2.3
20
88
0
67
34
23
17
25
1.96
22696--22874
40
4.5
41
76
13
196
39
21
17
21
1.92
22713--22874
20
8.2
20
75
16
126
41
21
16
20
1.90
25507--25622
21
5.7
20
76
10
101
23
34
18
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26155--26295
64
2.2
64
88
6
207
30
0
17
51
1.51
26354--26391
20
1.9
20
100
0
76
42
26
18
13
1.87
26630--26715
39
2.2
39
89
2
129
19
12
19
47
1.81
30189--30242
24
2.2
24
86
0
72
38
24
16
20
1.92
30368--30401
12
2.8
12
90
0
50
14
0
29
55
1.40
30954--30992
15
2.5
15
83
4
51
66
0
5
28
1.12
31149--31220
19
3.7
19
90
3
99
29
11
22
37
1.88
31241--31295
20
2.8
19
75
8
65
23
14
34
27
1.94
32155--32179
5
5.0
5
100
0
50
60
0
20
20
1.37
38122--38168
20
2.3
20
96
0
85
53
0
10
36
1.36
48342--48388
19
2.4
20
85
7
78
38
4
25
31
1.75
48616--48649
5
6.4
5
96
3
50
0
20
52
26
1.46
48734--48774
21
2.0
21
90
0
64
31
26
19
21
1.97
48888--48933
19
2.4
19
85
3
56
21
17
30
30
1.96
48899--48935
19
1.9
19
94
0
65
21
16
29
32
1.95
49032--49097
22
3.0
22
82
6
71
71
1
0
27
0.95
49035--49128
16
6.4
15
75
19
74
72
2
0
25
0.96
55776--55835
30
2.0
31
83
9
79
38
3
8
50
1.49
62446--62486
18
2.3
18
87
4
57
31
7
0
60
1.24
68405--68518
50
2.2
52
82
10
130
21
27
31
20
1.98
79180--79222
22
2.0
22
86
9
61
46
0
13
39
1.44
84166--84190
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85279--85352
32
2.3
32
95
0
130
28
21
14
35
1.93
87642--87706
14
4.6
14
98
0
112
29
24
15
30
1.96
89018--89112
23
4.3
22
80
9
88
32
24
15
27
1.95
89018--89112
46
2.1
45
81
9
106
32
24
15
27
1.95
93632--93952
103
3.1
103
97
0
606
26
13
22
37
1.91
93968--94028
23
2.7
23
89
0
95
19
26
27
26
1.99
98829--99157
103
3.2
103
98
0
633
26
13
23
36
1.92
99165--99225
23
2.7
23
84
0
86
21
26
26
26
1.99
106884--106914
14
2.1
15
94
5
55
6
16
0
77
0.97
107265--107316
25
2.2
24
86
10
72
42
13
1
42
1.55
107275--107323
25
2.0
25
95
0
89
38
14
0
46
1.44
109013--109046
11
2.8
12
91
8
52
32
0
0
67
0.91
113811--113862
22
2.4
22
80
6
70
55
0
0
44
0.99
113864--113929
26
2.5
26
82
2
78
42
4
6
46
1.48
127895--127959
32
2.0
32
100
0
130
36
21
20
21
1.95

Tables:   1

The End!