Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001174.1 Hibiscus syriacus cultivar Beakdansim tig00002338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2182627
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 11
Found at i:1350802 original size:150 final size:151
Alignment explanation
Indices: 1350492--1350781 Score: 394
Period size: 150 Copynumber: 1.9 Consensus size: 151
1350482 CAAATATTAG
* * *
1350492 AAAT-AATAAATAAATAAACAAAAGTTAGAATGCGATAAAATAAAAGTCAGTAGTTAACAGAGTC
1 AAATAAATAAATAAATAAACAAAAGTTAGAATGCAATAAAATAAAAGTCAGTACTTAACAAAGTC
* * * *
1350556 TGAACCATAATACTGCAGATCATACGCCGGATCGAGTCACCACAAGGCCAAATCAAATATTAGAA
66 GGAACCATAATAATGCAAATCATACGCCAGATCGAGTCACCACAAGGCCAAATCAAATATTAGAA
1350621 ACAATAAATAAATAAATAAGT
131 ACAATAAATAAATAAATAAGT
* * *
1350642 AAATAAATAAATAAAT-AA-AAATGATTA-AAGTGCAATAAAATAAAAGTTAGTACTTAGCAAAG
1 AAATAAATAAATAAATAAACAAAAG-TTAGAA-TGCAATAAAATAAAAGTCAGTACTTAACAAAG
* *
1350704 TCGGAACCATAATAATGCAAATCATAC-CCTAGATCGGGTCACCACAAGGCCGAATCAAATATTA
64 TCGGAACCATAATAATGCAAATCATACGCC-AGATCGAGTCACCACAAGGCCAAATCAAATATTA
1350768 GAATA-AATAAATAA
128 GAA-ACAATAAATAA
1350782 CAATGATTAA
Statistics
Matches: 123, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
149 8 0.07
150 103 0.84
151 12 0.10
ACGTcount: A:0.51, C:0.14, G:0.13, T:0.21
Consensus pattern (151 bp):
AAATAAATAAATAAATAAACAAAAGTTAGAATGCAATAAAATAAAAGTCAGTACTTAACAAAGTC
GGAACCATAATAATGCAAATCATACGCCAGATCGAGTCACCACAAGGCCAAATCAAATATTAGAA
ACAATAAATAAATAAATAAGT
Found at i:1350861 original size:122 final size:123
Alignment explanation
Indices: 1350646--1350950 Score: 387
Period size: 122 Copynumber: 2.4 Consensus size: 123
1350636 ATAAGTAAAT
* * * *
1350646 AAATAAATAAATAAAAATGATTAAAGTGCAATAAAATAAAAGTTAGTACTTAGCAAAGTCGGAAC
1 AAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAACAAAGTCCGAAC
* * *
1350711 CATAATAATGCAAATCATACCCTAGATCGGGTCACCACAAGGCCGAATCAAATATTAG
66 CATAATAATGCAAACCATAACCTAGATCGGGTCACCACAAGGCCGAATCAAATAATAG
*
1350769 -AATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAACAGAGTCCGAAC
1 AAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAACAAAGTCCGAAC
** * * *
1350833 CATAATAATGCGGACCATAACCTGGATCGGGTCACCACAAGGCTGAATCGAATAATAG
66 CATAATAATGCAAACCATAACCTAGATCGGGTCACCACAAGGCCGAATCAAATAATAG
** * *
1350891 AAACAATAAATAAATAAATAACAATGATTAAAGTATAATAAAATAAAATTTAGTAGTTAA
1 -------AAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAA
1350951 TATGCAATGA
Statistics
Matches: 157, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
122 109 0.69
130 48 0.31
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.23
Consensus pattern (123 bp):
AAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAACAAAGTCCGAAC
CATAATAATGCAAACCATAACCTAGATCGGGTCACCACAAGGCCGAATCAAATAATAG
Found at i:1350950 original size:29 final size:29
Alignment explanation
Indices: 1350918--1350978 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
1350908 ATAACAATGA
*
1350918 TTAAAGTAT-AATAAAATAAAATTTAGTAG
1 TTAAA-TATCAATAAAATAAAAGTTAGTAG
*
1350947 TT-AATATGCAATGAAATAAAAGTTAGTAG
1 TTAAATAT-CAATAAAATAAAAGTTAGTAG
1350976 TTA
1 TTA
1350979 GAAATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
27 3 0.11
28 2 0.07
29 22 0.81
ACGTcount: A:0.51, C:0.02, G:0.13, T:0.34
Consensus pattern (29 bp):
TTAAATATCAATAAAATAAAAGTTAGTAG
Found at i:1352666 original size:395 final size:398
Alignment explanation
Indices: 1351915--1352701 Score: 1242
Period size: 395 Copynumber: 2.0 Consensus size: 398
1351905 TCTAGCAAAT
* *
1351915 ATGACAATATTGATCCACCTCCTTCTGTGATGGAATCGAACATAACGTCAGTGTTGATCTACCCC
1 ATGAAAATATTGATCCACCTCCTTCTGTGATGGAATCGAACATAACGTCAGTGCTGATCTA--CC
* * *
1351980 ATTCTCATTCTGTGATAGAATTGAGCAAAAATTTGATGCTGATCCAACTCCTTATGTGATGGATT
64 --TCTCATTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGTGATAGATT
* *
1352045 TGAGTGAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAATGAGATGGTGGTGCTGA
127 TGAGCGAAATAAAAATGTCGATCCACCTCCTTCTGTGATGAAATCGAATGAGATGGTGGTGCTGA
*
1352110 TCTACCTCCTTCTGTAATAGAATCGAGCAAAAAATTGATGCTGATTCAACTCCTTATGCGATGGA
192 TCTACCTCCTTCTGTAATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGA
* * * *
1352175 TTTGAGCAAAATAAAAATATCGATCCACCTCATTCTGTGATGGAATCAAACGAGTTGTCGGTGCT
257 TTTGAGCAAAATAAAAATATCGATACACCTCATTCTATGATGAAATCAAACGAGATGTCGGTGCT
* *
1352240 GATCTACCTTCTTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATG
322 GATCTACCTCCTTCTGTGATAGAAACGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATG
1352305 GATTTGAGCGAA
387 GATTTGAGCGAA
* * *
1352317 ATGAAAATTTTGATCCACCTCCTTCTGTGATGGAATCGAACGA-GATGTCAGTGCTGATCTA-C-
1 ATGAAAATATTGATCCACCTCCTTCTGTGATGGAATCGAAC-ATAACGTCAGTGCTGATCTACCT
* *
1352379 CTCATTCTGTGATAGAATCGAGTAAAAAATTGATGTTG-TCCAACTCCTTATGTGATAGATTTGA
65 CTCATTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGTGATAGATTTGA
* *
1352443 GCGAAATAAAAATGTTGATCCACCTCCTTCTGTGATGAAATCGAATGAGAT-GTCGGTGTTGATC
130 GCGAAATAAAAATGTCGATCCACCTCCTTCTGTGATGAAATCGAATGAGATGGT-GGTGCTGATC
*
1352507 TACCTCCTTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATT
194 TACCTCCTTCTGTAATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATT
* * * **
1352572 TGAGCGAAATAAAAATGTCGATACACCTCATTCTATGATGAAATCGAACGAGATGTCGGTTTTGA
259 TGAGCAAAATAAAAATATCGATACACCTCATTCTATGATGAAATCAAACGAGATGTCGGTGCTGA
1352637 TCTACCTCCTTCTGTGATAGAAACGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGA
324 TCTACCTCCTTCTGTGATAGAAACGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGA
1352702 AATGAGCTAA
Statistics
Matches: 356, Mismatches: 27, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
394 2 0.01
395 264 0.74
396 34 0.10
399 1 0.00
402 54 0.15
403 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (398 bp):
ATGAAAATATTGATCCACCTCCTTCTGTGATGGAATCGAACATAACGTCAGTGCTGATCTACCTC
TCATTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGTGATAGATTTGAG
CGAAATAAAAATGTCGATCCACCTCCTTCTGTGATGAAATCGAATGAGATGGTGGTGCTGATCTA
CCTCCTTCTGTAATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTG
AGCAAAATAAAAATATCGATACACCTCATTCTATGATGAAATCAAACGAGATGTCGGTGCTGATC
TACCTCCTTCTGTGATAGAAACGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATT
TGAGCGAA
Found at i:1352682 original size:44 final size:44
Alignment explanation
Indices: 1351987--1352691 Score: 261
Period size: 44 Copynumber: 16.0 Consensus size: 44
1351977 CCCATTCTCA
* * *
1351987 TTCTGTGATAGAATTGAGCAAAAATTTGATGCTGATCCAACTCC
1 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCACCTCC
* * * * * *
1352031 TTATGTGATGGATTTGAGTGAAATAAA--AATG-TCGATCCACCTCC
1 TTCTGTGATAGAATCGAG-CAAA-AAATTGATGCT-GATCCACCTCC
* ** * * *
1352075 TTCTGTGATGGAATCGA--ATGAGATGGTGGTGCTGATCTACCTCC
1 TTCTGTGATAGAATCGAGCAAAAAAT--TGATGCTGATCCACCTCC
* * *
1352119 TTCTGTAATAGAATCGAGCAAAAAATTGATGCTGATTCAACTCC
1 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCACCTCC
* * * * * * *
1352163 TTATGCGATGGATTTGAGCAAAATAAAAAT-AT-C-GATCCACCTCA
1 TTCTGTGATAGAATCGAGC--AA-AAAATTGATGCTGATCCACCTCC
* * * * **** * * * *
1352207 TTCTGTGATGGAATCAAACGAGTTGTCGGTGCTGATCTACCTTC
1 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCACCTCC
*
1352251 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCC
1 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCACCTCC
* * * * *
1352295 TTATGCGATGGATTTGAGCGAAATGAAAATT--T--TGATCCACCTCC
1 TTCTGTGATAGAATCGAGC--AA--AAAATTGATGCTGATCCACCTCC
* ** * * * *
1352339 TTCTGTGATGGAATCGA--ACGAGATGTCAGTGCTGATCTACCTCA
1 TTCTGTGATAGAATCGAGCAAAAAAT-TGA-TGCTGATCCACCTCC
* * *
1352383 TTCTGTGATAGAATCGAGTAAAAAATTGATGTTG-TCCAACTCC
1 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCACCTCC
* * * * *
1352426 TTATGTGATAGATTTGAGCGAAATAAA--AATGTTGATCCACCTCC
1 TTCTGTGATAGAATCGAGC-AAA-AAATTGATGCTGATCCACCTCC
** * * * *
1352470 TTCTGTGAT-GAAATCGA--ATGAGATGTCGGTGTTGATCTACCTCC
1 TTCTGTGATAG-AATCGAGCAAAAAAT-T-GATGCTGATCCACCTCC
*
1352514 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCC
1 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCACCTCC
* * * * * * * *
1352558 TTATGCGATGGATTTGAGCGAAATAAA--AATG-TCGATACACCTCA
1 TTCTGTGATAGAATCGAGC-AAA-AAATTGATGCT-GATCCACCTCC
* * * * ** * * ** *
1352602 TTCTATGAT-GAAATCGAACGAGATGTCGGTTTTGATCTACCTCC
1 TTCTGTGATAG-AATCGAGCAAAAAATTGATGCTGATCCACCTCC
* *
1352646 TTCTGTGATAGAAACGAGCAAAAAATTGATGCTGATCCAACTCC
1 TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCACCTCC
1352690 TT
1 TT
1352692 ATGCGATGGA
Statistics
Matches: 465, Mismatches: 149, Indels: 94
0.66 0.21 0.13
Matches are distributed among these distances:
38 3 0.01
39 1 0.00
40 5 0.01
41 2 0.00
42 4 0.01
43 33 0.07
44 365 0.78
45 17 0.04
46 24 0.05
47 5 0.01
48 6 0.01
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31
Consensus pattern (44 bp):
TTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCACCTCC
Found at i:1352708 original size:132 final size:132
Alignment explanation
Indices: 1351926--1352701 Score: 1126
Period size: 132 Copynumber: 5.8 Consensus size: 132
1351916 TGACAATATT
* * * *
1351926 GATCCACCTCCTTCTGTGATGGAATCGAAC-ATAACGTCAGTGTTGATCTACCCCATTCTCATTC
1 GATCCACCTCCTTCTGTGATGGAATCGAACGA-GATGTCGGTGCTGATCTA--CC--TC-C-TTC
* * * *
1351990 TGTGATAGAATTGAGCAAAAATTTGATGCTGATCCAACTCCTTATGTGATGGATTTGAGTGAAAT
59 TGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAAT
1352055 AAAAATGTC
124 AAAAATGTC
* *
1352064 GATCCACCTCCTTCTGTGATGGAATCGAATGAGATGGT-GGTGCTGATCTACCTCCTTCTGTAAT
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGAT-GTCGGTGCTGATCTACCTCCTTCTGTGAT
* *
1352128 AGAATCGAGCAAAAAATTGATGCTGATTCAACTCCTTATGCGATGGATTTGAGCAAAATAAAAAT
65 AGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAAT
*
1352193 ATC
130 GTC
* * * *
1352196 GATCCACCTCATTCTGTGATGGAATCAAACGAGTTGTCGGTGCTGATCTACCTTCTTCTGTGATA
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGGTGCTGATCTACCTCCTTCTGTGATA
* *
1352261 GAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATGAAAATT
66 GAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAATG
*
1352326 TT
131 TC
* *
1352328 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGCTGATCTACCTCATTCTGTGATA
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGGTGCTGATCTACCTCCTTCTGTGATA
* * * *
1352393 GAATCGAGTAAAAAATTGATGTTG-TCCAACTCCTTATGTGATAGATTTGAGCGAAATAAAAATG
66 GAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAATG
*
1352457 TT
131 TC
* * *
1352459 GATCCACCTCCTTCTGTGATGAAATCGAATGAGATGTCGGTGTTGATCTACCTCCTTCTGTGATA
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGGTGCTGATCTACCTCCTTCTGTGATA
1352524 GAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAATG
66 GAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAATG
1352589 TC
131 TC
* * * * **
1352591 GATACACCTCATTCTATGATGAAATCGAACGAGATGTCGGTTTTGATCTACCTCCTTCTGTGATA
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGGTGCTGATCTACCTCCTTCTGTGATA
*
1352656 GAAACGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGA
66 GAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGA
1352702 AATGAGCTAA
Statistics
Matches: 582, Mismatches: 52, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
131 122 0.21
132 412 0.71
133 1 0.00
134 2 0.00
136 2 0.00
138 40 0.07
139 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (132 bp):
GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGGTGCTGATCTACCTCCTTCTGTGATA
GAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAATG
TC
Found at i:1353468 original size:20 final size:21
Alignment explanation
Indices: 1353429--1353469 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1353419 CAGTCTGAAT
1353429 GCTGAACGGTTCAACATTCAGC
1 GCTGAACGGTTC-ACATTCAGC
*
1353451 GCTGAATGGTTC-CATTCAG
1 GCTGAACGGTTCACATTCAG
1353470 AGCCAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (21 bp):
GCTGAACGGTTCACATTCAGC
Found at i:1355084 original size:11 final size:11
Alignment explanation
Indices: 1355047--1355113 Score: 55
Period size: 11 Copynumber: 5.7 Consensus size: 11
1355037 TTTCAAAAAA
*
1355047 TTTCTTTTTTT
1 TTTCTTTTATT
*
1355058 TCTTTTTGTTATTT
1 T-TTCTT-TTA-TT
1355072 TTTCTTTTATT
1 TTTCTTTTATT
1355083 TTT-TCTTTATT
1 TTTCT-TTTATT
*
1355094 TTTCCTTTATT
1 TTTCTTTTATT
1355105 TTTCCTTTT
1 TTT-CTTTT
1355114 TCTTTCTCTC
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
10 1 0.02
11 24 0.53
12 11 0.24
13 6 0.13
14 3 0.07
ACGTcount: A:0.06, C:0.12, G:0.01, T:0.81
Consensus pattern (11 bp):
TTTCTTTTATT
Found at i:1355129 original size:23 final size:23
Alignment explanation
Indices: 1355103--1355160 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
1355093 TTTTCCTTTA
1355103 TTTTTCCTTTTTCTT-TCTCTCTT
1 TTTTTCCTTTTT-TTCTCTCTCTT
1355126 TTTTT-CTATTTTTTCTCTCTCTT
1 TTTTTCCT-TTTTTTCTCTCTCTT
*
1355149 TCATTTCCTTTT
1 T-TTTTCCTTTT
1355161 CTATTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 4 0.13
23 18 0.60
24 6 0.20
25 2 0.07
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTTTCCTTTTTTTCTCTCTCTT
Found at i:1355130 original size:34 final size:34
Alignment explanation
Indices: 1355066--1355131 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
1355056 TTTCTTTTTG
* *
1355066 TTATTTTTTCTTTTATTTTTTCTTTATTTTTCCT
1 TTATTTTTCCTTTTATTTTCTCTTTATTTTTCCT
1355100 TTATTTTTCCTTTT-TCTTTCTCTCTT-TTTTTC
1 TTATTTTTCCTTTTAT-TTTCTCT-TTATTTTTC
1355132 TATTTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 1 0.04
34 25 0.89
35 2 0.07
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (34 bp):
TTATTTTTCCTTTTATTTTCTCTTTATTTTTCCT
Found at i:1355138 original size:11 final size:11
Alignment explanation
Indices: 1355066--1355141 Score: 75
Period size: 11 Copynumber: 7.0 Consensus size: 11
1355056 TTTCTTTTTG
1355066 TTATTTTTTCTT
1 TTATTTTTTC-T
1355078 TTATTTTTTCT
1 TTATTTTTTCT
*
1355089 TTATTTTTCCT
1 TTATTTTTTCT
*
1355100 TTATTTTTCCT
1 TTATTTTTTCT
*
1355111 TT-TTCTTTCT
1 TTATTTTTTCT
* *
1355121 CTCTTTTTT-T
1 TTATTTTTTCT
*
1355131 CTATTTTTTCT
1 TTATTTTTTCT
1355142 CTCTCTTTCA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
10 16 0.29
11 30 0.54
12 10 0.18
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (11 bp):
TTATTTTTTCT
Found at i:1358737 original size:14 final size:14
Alignment explanation
Indices: 1358718--1358750 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
1358708 AATGCAAATA
1358718 CAAAAATAA-AGATG
1 CAAAAATAAGAG-TG
1358732 CAAAAATAAGAGTG
1 CAAAAATAAGAGTG
1358746 CAAAA
1 CAAAA
1358751 TGTGAGATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.64, C:0.09, G:0.15, T:0.12
Consensus pattern (14 bp):
CAAAAATAAGAGTG
Found at i:1360983 original size:4 final size:4
Alignment explanation
Indices: 1360974--1361018 Score: 81
Period size: 4 Copynumber: 11.2 Consensus size: 4
1360964 TATTAGAAAC
*
1360974 AATA AATA AATA AATA AATA AATA AGTA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA A
1361019 CAATGATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:1361125 original size:159 final size:155
Alignment explanation
Indices: 1360846--1361149 Score: 414
Period size: 158 Copynumber: 1.9 Consensus size: 155
1360836 ATATTAGATA
* * *
1360846 AAATAAATAAATAAACAAAAGTTAGAATGCGATAAAATAAAAGTCAGTAGTTAGCAGAGTCTGAA
1 AAATAAATAAATAAACAAAAGTTAGAATGCAATAAAATAAAAGTCAGTAATTAACAGAGTCTGAA
* * *
1360911 CCATAATAATACGGATTATATCCCATATCGGGTCACCACAAGGCCTAATCAAATATTAGAAACAA
66 CCATAATAATACGGATCATACCCCAGATCGGGTCACCACAAGGCCTAATCAAATATTAGAAACAA
1360976 TAAATAAATAAATAAATAAATAAGT
131 TAAATAAATAAATAAATAAATAAGT
* *
1361001 AAATAAATAAATAAATAACAATGATTA-AAGTGCAATAAAATAAAAGTTAGTAATTAACAGAGTC
1 AAATAAATAAATAAACAA-AA-G-TTAGAA-TGCAATAAAATAAAAGTCAGTAATTAACAGAGTC
* ** * * *
1361065 TGAACTATAATAATGTGGATCATACCCCCGGATCGGGTCACCACAAGG-TTGAATCGAATATTAG
62 TGAACCATAATAATACGGATCATA-CCCCAGATCGGGTCACCACAAGGCCT-AATCAAATATTAG
1361129 AAACAATAAATAAATAAATAA
125 AAACAATAAATAAATAAATAA
1361150 CAATGATTAA
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
155 17 0.13
156 2 0.02
157 3 0.02
158 54 0.42
159 53 0.41
ACGTcount: A:0.50, C:0.12, G:0.13, T:0.24
Consensus pattern (155 bp):
AAATAAATAAATAAACAAAAGTTAGAATGCAATAAAATAAAAGTCAGTAATTAACAGAGTCTGAA
CCATAATAATACGGATCATACCCCAGATCGGGTCACCACAAGGCCTAATCAAATATTAGAAACAA
TAAATAAATAAATAAATAAATAAGT
Found at i:1361148 original size:131 final size:130
Alignment explanation
Indices: 1361002--1361318 Score: 512
Period size: 130 Copynumber: 2.4 Consensus size: 130
1360992 TAAATAAGTA
1361002 AATAAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAACAGAG-TCT
1 AATAAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAACAGAGTTC-
* *
1361066 GAACTATAATAATGTGGATCATACCCCCGGATCGGGTCACCACAAGGTTGAATCGAA-TATTAGA
65 GAACCATAATAATGAGGATCATA-CCCCGGATCGGGTCACCACAAGGTTGAATCGAATTA-TAGA
1361130 AAC
128 AAC
* * *
1361133 AATAAATAAATAAATAACAATGATTAAAGTACAATAAAATAAAAGTTACTAATTAGCAGAGTTCG
1 AATAAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAACAGAGTTCG
** *
1361198 AACCATAATAATGAGGATCATACCTTGGGTCGGGTCACCACAAGGTTGAATCGAATTATAGAAAC
66 AACCATAATAATGAGGATCATACCCCGGATCGGGTCACCACAAGGTTGAATCGAATTATAGAAAC
*
1361263 AATAAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAGTTAA
1 AATAAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAA
1361319 TATGCAATAA
Statistics
Matches: 172, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
130 89 0.52
131 81 0.47
132 2 0.01
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.25
Consensus pattern (130 bp):
AATAAATAAATAAATAACAATGATTAAAGTGCAATAAAATAAAAGTTAGTAATTAACAGAGTTCG
AACCATAATAATGAGGATCATACCCCGGATCGGGTCACCACAAGGTTGAATCGAATTATAGAAAC
Found at i:1361170 original size:159 final size:159
Alignment explanation
Indices: 1360846--1361149 Score: 418
Period size: 159 Copynumber: 1.9 Consensus size: 159
1360836 ATATTAGATA
* * *
1360846 AAATAAATAAATAAACAAAAGTTAGAATGCGATAAAATAAAAGTCAGTAGTTAGCAGAGTCTGAA
1 AAATAAATAAATAAACAAAAGTTAGAATGCAATAAAATAAAAGTCAGTAATTAACAGAGTCTGAA
* * *
1360911 CCATAATAATACGGATTATATCCCATATCGGGTCACCACAAGGCCTAATCAAATATTAGAAACAA
66 CCATAATAATACGGATCATACCCCAGATCGGGTCACCACAAGGCCTAATCAAATATTAGAAACAA
1360976 TAAATAAATAAATAAATAAATAAGTAAAT
131 TAAATAAATAAATAAATAAATAAGTAAAT
* *
1361005 AAATAAATAAAT-AAC-AATGATTA-AAGTGCAATAAAATAAAAGTTAGTAATTAACAGAGTCTG
1 AAATAAATAAATAAACAAAAG-TTAGAA-TGCAATAAAATAAAAGTCAGTAATTAACAGAGTCTG
* ** * * *
1361067 AACTATAATAATGTGGATCATACCCCCGGATCGGGTCACCACAAGG-TTGAATCGAATATTAGAA
64 AACCATAATAATACGGATCATA-CCCCAGATCGGGTCACCACAAGGCCT-AATCAAATATTAGAA
1361131 ACAATAAATAAATAAATAA
127 ACAATAAATAAATAAATAA
1361150 CAATGATTAA
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
157 5 0.04
158 57 0.45
159 65 0.51
ACGTcount: A:0.50, C:0.12, G:0.13, T:0.24
Consensus pattern (159 bp):
AAATAAATAAATAAACAAAAGTTAGAATGCAATAAAATAAAAGTCAGTAATTAACAGAGTCTGAA
CCATAATAATACGGATCATACCCCAGATCGGGTCACCACAAGGCCTAATCAAATATTAGAAACAA
TAAATAAATAAATAAATAAATAAGTAAAT
Found at i:1361356 original size:29 final size:29
Alignment explanation
Indices: 1361286--1361357 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
1361276 ATAACAATGA
* *
1361286 TTAAAGTGCAATAAAATAAAAGTTAGTAG
1 TTAAAATGAAATAAAATAAAAGTTAGTAG
* *
1361315 TTAATATGCAATAAAATAAAAGTTAGTAG
1 TTAAAATGAAATAAAATAAAAGTTAGTAG
1361344 TTAGAAAT-AAATAA
1 TTA-AAATGAAATAA
1361358 CATAGCAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.54, C:0.03, G:0.14, T:0.29
Consensus pattern (29 bp):
TTAAAATGAAATAAAATAAAAGTTAGTAG
Found at i:1364385 original size:68 final size:67
Alignment explanation
Indices: 1364285--1364417 Score: 162
Period size: 68 Copynumber: 2.0 Consensus size: 67
1364275 GCAATAATTA
* * * *
1364285 AAGGACTGAAATTAAATTACTGAAAAGTAAATG-ACAAAAATAAAAGGCAGAAAATTAAAGTAAC
1 AAGGACTGAAATAAAATAAATGAAAAATAAATGTAC-AAAATAAAAGGCAGAAAATTAAA-TAAC
1364349 ATTT
64 ATTT
* * *
1364353 AAGGACTGAAATAAAATAAAT-AAAAATAAAATGTACAAATTTAAAGGCATAAAATTAAATAACA
1 AAGGACTGAAATAAAATAAATGAAAAAT-AAATGTACAAAATAAAAGGCAGAAAATTAAATAACA
1364417 T
65 T
1364418 AATTTAAAGG
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
67 11 0.20
68 43 0.77
69 2 0.04
ACGTcount: A:0.59, C:0.07, G:0.12, T:0.23
Consensus pattern (67 bp):
AAGGACTGAAATAAAATAAATGAAAAATAAATGTACAAAATAAAAGGCAGAAAATTAAATAACAT
TT
Found at i:1371243 original size:207 final size:209
Alignment explanation
Indices: 1370882--1371304 Score: 764
Period size: 207 Copynumber: 2.0 Consensus size: 209
1370872 CCGTATGCAT
1370882 CAGCAGTGGGAAGTTTGATGTTTGCTATGATATGCACAAGACCAGACATTGCACAAGCAGTGGGA
1 CAGCAGTGGGAAGTTTGATGTTTGCTA-GATATGCAC-A-A-CAGACATTGCACAAGCAGTGGGA
1370947 GCGGTTAGTCGGTACATGGCGAATCCAGGCAAAGAGCATTGGAATACAGTAAAGAGGATCCTGAG
62 GCGGTTAGTCGGTACATGGCGAATCCAGGCAAAGAGCATTGGAATACAGTAAAGAGGATCCTGAG
1371012 ATACATCAAAGGGACCTCAAATGTTGCATTATGTTACAGAGGATCAAACTTACTAATCAATGGTT
127 ATACATCAAAGGGACCTCAAATGTTGCATTATGTTACAGAGGATCAAACTTACTAATCAATGGTT
1371077 ATGTAGATTCTGACTATG
192 ATGTAGATTCTGACTATG
1371095 CAGCAGTGGGAAGTTTGATGTTTGCTA-ATCCATGCAC-A-AGACATTGCAC-AGCAGTGGGAGC
1 CAGCAGTGGGAAGTTTGATGTTTGCTAGAT--ATGCACAACAGACATTGCACAAGCAGTGGGAGC
1371156 GGTTAGTCGGTACATGGCGAATCCAGGCAAAGAGCATTGGAATACAGTAAAGAGGATCCTGAGAT
64 GGTTAGTCGGTACATGGCGAATCCAGGCAAAGAGCATTGGAATACAGTAAAGAGGATCCTGAGAT
1371221 ACATCAAAGGGACCTCAAATGTTGCATTATGTTACAGAGGATCAAACTTACTAATCAATGGTTAT
129 ACATCAAAGGGACCTCAAATGTTGCATTATGTTACAGAGGATCAAACTTACTAATCAATGGTTAT
1371286 GTAGATTCTGACTATG
194 GTAGATTCTGACTATG
1371302 CAG
1 CAG
1371305 GAGATTTGGA
Statistics
Matches: 208, Mismatches: 0, Indels: 10
0.95 0.00 0.05
Matches are distributed among these distances:
207 161 0.77
208 11 0.05
210 1 0.00
211 2 0.01
213 33 0.16
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (209 bp):
CAGCAGTGGGAAGTTTGATGTTTGCTAGATATGCACAACAGACATTGCACAAGCAGTGGGAGCGG
TTAGTCGGTACATGGCGAATCCAGGCAAAGAGCATTGGAATACAGTAAAGAGGATCCTGAGATAC
ATCAAAGGGACCTCAAATGTTGCATTATGTTACAGAGGATCAAACTTACTAATCAATGGTTATGT
AGATTCTGACTATG
Found at i:1372630 original size:21 final size:21
Alignment explanation
Indices: 1372606--1372658 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
1372596 TCTTCAGTTC
*
1372606 ACTCCAAAACTTACGCCTTCG
1 ACTCGAAAACTTACGCCTTCG
1372627 ACTCGAAAACTTACGCCTTCG
1 ACTCGAAAACTTACGCCTTCG
1372648 ACTCGAAAACT
1 ACTCGAAAACT
1372659 CAAACACAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.32, C:0.34, G:0.11, T:0.23
Consensus pattern (21 bp):
ACTCGAAAACTTACGCCTTCG
Found at i:1387276 original size:168 final size:168
Alignment explanation
Indices: 1386998--1387327 Score: 570
Period size: 168 Copynumber: 2.0 Consensus size: 168
1386988 CATATCACAT
* *
1386998 ATATAAAGACTATCCAATTTATGTCCTTTACTAATAATCTTATTTGTCAAGAGATCCTGAAACAA
1 ATATAAAGACCATCCAATTTATGTCCTTTACTAATAATCTTATTCGTCAAGAGATCCTGAAACAA
* * *
1387063 ACAATAACTGGGGAAAAATGAGACATAACAATTAAGGGTACATGTAAGTTTACTGACAGACATCA
66 ACAATAACCGGGAAAAAATGAGACACAACAATTAAGGGTACATGTAAGTTTACTGACAGACATCA
1387128 AATTAAAAGATAAATGTGGTAAACTCAAAACATCAAGG
131 AATTAAAAGATAAATGTGGTAAACTCAAAACATCAAGG
*
1387166 ATATAAAGACCATCCAATTTATGTCCTTTACTAATAATCTTATTCGTCAAGAGATCCTGAAATAA
1 ATATAAAGACCATCCAATTTATGTCCTTTACTAATAATCTTATTCGTCAAGAGATCCTGAAACAA
* **
1387231 ACAATAACCGGGAAAAAATGAGACACGACAATTAAGGGTACATGTAAGTTTACTGATTGACATCA
66 ACAATAACCGGGAAAAAATGAGACACAACAATTAAGGGTACATGTAAGTTTACTGACAGACATCA
*
1387296 AATTAAAAGATAATTGTGGTAAACTCAAAACA
131 AATTAAAAGATAAATGTGGTAAACTCAAAACA
1387328 CACTACAACA
Statistics
Matches: 152, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
168 152 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.27
Consensus pattern (168 bp):
ATATAAAGACCATCCAATTTATGTCCTTTACTAATAATCTTATTCGTCAAGAGATCCTGAAACAA
ACAATAACCGGGAAAAAATGAGACACAACAATTAAGGGTACATGTAAGTTTACTGACAGACATCA
AATTAAAAGATAAATGTGGTAAACTCAAAACATCAAGG
Found at i:1389096 original size:3 final size:3
Alignment explanation
Indices: 1389088--1389124 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
1389078 GAGGTAAAGA
1389088 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1389125 AATAGATACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:1390855 original size:28 final size:28
Alignment explanation
Indices: 1390763--1390861 Score: 76
Period size: 28 Copynumber: 3.5 Consensus size: 28
1390753 TGGATGCTTT
* * *
1390763 TTATTTTAATTTGTAAAAAATATAGGGTA
1 TTATTGTAATTTATAAAAATTATA-GGTA
* * * ** *
1390792 TTATTGTAATTT-GAAAAATGCAGACCTT
1 TTATTGTAATTTATAAAAAT-TATAGGTA
1390820 TTCA-TGTAATTTATAAAAATTATAGGTA
1 TT-ATTGTAATTTATAAAAATTATAGGTA
1390848 TTATTGTAATTTAT
1 TTATTGTAATTTAT
1390862 GAGAAGTTTT
Statistics
Matches: 52, Mismatches: 14, Indels: 9
0.69 0.19 0.12
Matches are distributed among these distances:
27 1 0.02
28 31 0.60
29 20 0.38
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.45
Consensus pattern (28 bp):
TTATTGTAATTTATAAAAATTATAGGTA
Found at i:1390911 original size:29 final size:28
Alignment explanation
Indices: 1390824--1390923 Score: 80
Period size: 29 Copynumber: 3.5 Consensus size: 28
1390814 GACCTTTTCA
* *
1390824 TGTAATTTATAAAAATTATAGGTA-TTAT
1 TGTAATTTATAAAAGTT-TTGGTATTTAT
* * * *
1390852 TGTAATTTATGAGAAGTTTT-TTCCTTGAT
1 TGTAATTTAT-AAAAGTTTTGGT-ATTTAT
1390881 TGTAATTTATAAATAGTTTTGGTATTTAT
1 TGTAATTTATAAA-AGTTTTGGTATTTAT
1390910 TGTAATATTA-AAAA
1 TGTAAT-TTATAAAA
1390924 TTGACTTCTA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
27 1 0.02
28 14 0.25
29 37 0.66
30 4 0.07
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (28 bp):
TGTAATTTATAAAAGTTTTGGTATTTAT
Found at i:1390998 original size:15 final size:15
Alignment explanation
Indices: 1390969--1391003 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
1390959 TTTTATTGTA
*
1390969 ATTTT-ATAATTTTT
1 ATTTTAATAATATTT
1390983 ATTTTAATAATATTT
1 ATTTTAATAATATTT
1390998 ATTTTA
1 ATTTTA
1391004 GAAATTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTTAATAATATTT
Found at i:1394899 original size:60 final size:60
Alignment explanation
Indices: 1394804--1394920 Score: 189
Period size: 60 Copynumber: 1.9 Consensus size: 60
1394794 ATAGTCCTTT
**
1394804 GACTATAAGGTGATGCTTTGTTGAGTCCATTGACTATTAAAAGTTACAAAATGGTCATTC
1 GACTATAAGGTGATGCTTTGTTGAGTCCACCGACTATTAAAAGTTACAAAATGGTCATTC
* * *
1394864 GACTATAGGGTGTTGCTTTGTTGAGTCCCCCGACTATTAAAAGTTACAAAATGGTCA
1 GACTATAAGGTGATGCTTTGTTGAGTCCACCGACTATTAAAAGTTACAAAATGGTCA
1394921 CCTGACTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (60 bp):
GACTATAAGGTGATGCTTTGTTGAGTCCACCGACTATTAAAAGTTACAAAATGGTCATTC
Found at i:1395270 original size:60 final size:59
Alignment explanation
Indices: 1395135--1395270 Score: 166
Period size: 59 Copynumber: 2.3 Consensus size: 59
1395125 ATAGTCGTGT
* * * *
1395135 GACCATTTTGTAACTTTTAATAGTCGGGGACTCAACAAAGCAACATCTTATAGTCGAAG
1 GACCAATTTGTAACTTTTAATAGTCGGAGACTCAACAAAGCAACACCCTATAGTCGAAG
* * * **
1395194 GACCATTTTGTAACTTTTAATAGTCGAGAGACTCAACAAAGCATCACCCTATAGTTGGGG
1 GACCAATTTGTAACTTTTAATAGTCG-GAGACTCAACAAAGCAACACCCTATAGTCGAAG
1395254 GA-CAATTTGTATACTTT
1 GACCAATTTGTA-ACTTT
1395271 ACCCTAAATT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
59 34 0.51
60 33 0.49
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (59 bp):
GACCAATTTGTAACTTTTAATAGTCGGAGACTCAACAAAGCAACACCCTATAGTCGAAG
Found at i:1395769 original size:9 final size:9
Alignment explanation
Indices: 1395754--1395894 Score: 61
Period size: 8 Copynumber: 16.4 Consensus size: 9
1395744 TATAATATAA
1395754 ATATATTAT
1 ATATATTAT
*
1395763 ATCTATTA-
1 ATATATTAT
1395771 ATATA-TAT
1 ATATATTAT
*
1395779 A-ATA-TAA
1 ATATATTAT
1395786 ATATATTAT
1 ATATATTAT
*
1395795 ATCTATTA-
1 ATATATTAT
1395803 ATATA-TAT
1 ATATATTAT
1395811 A-ATATT-T
1 ATATATTAT
* *
1395818 CTATATAAT
1 ATATATTAT
* *
1395827 AAATAATATAA
1 ATAT-AT-TAT
*
1395838 AGATATTAT
1 ATATATTAT
*
1395847 ATA-ATAAT
1 ATATATTAT
*
1395855 ATATAGTA-
1 ATATATTAT
1395863 ATATTATTAAT
1 ATA-TATT-AT
*
1395874 ATATATAAT
1 ATATATTAT
*
1395883 A-ATTTTAT
1 ATATATTAT
1395891 ATAT
1 ATAT
1395895 GATTTATGAT
Statistics
Matches: 96, Mismatches: 22, Indels: 28
0.66 0.15 0.19
Matches are distributed among these distances:
7 14 0.15
8 34 0.35
9 33 0.34
10 8 0.08
11 7 0.07
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (9 bp):
ATATATTAT
Found at i:1395773 original size:17 final size:17
Alignment explanation
Indices: 1395753--1395808 Score: 80
Period size: 17 Copynumber: 3.4 Consensus size: 17
1395743 TTATAATATA
1395753 AATATATTATATCTATT
1 AATATATTATATCTATT
* *
1395770 AATATA-TATA-ATATA
1 AATATATTATATCTATT
1395785 AATATATTATATCTATT
1 AATATATTATATCTATT
1395802 AATATAT
1 AATATAT
1395809 ATAATATTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 9 0.27
16 8 0.24
17 16 0.48
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (17 bp):
AATATATTATATCTATT
Found at i:1395823 original size:32 final size:32
Alignment explanation
Indices: 1395737--1395815 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
1395727 AAAACTAAAA
*
1395737 TAATATTTATAATATAAATATATTATATCTAT
1 TAATATATATAATATAAATATATTATATCTAT
1395769 TAATATATATAATATAAATATATTATATCTAT
1 TAATATATATAATATAAATATATTATATCTAT
1395801 TAATATATATAATAT
1 TAATATATATAATAT
1395816 TTCTATATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TAATATATATAATATAAATATATTATATCTAT
Found at i:1395849 original size:25 final size:25
Alignment explanation
Indices: 1395734--1395853 Score: 88
Period size: 26 Copynumber: 4.7 Consensus size: 25
1395724 CTTAAAACTA
*
1395734 AAATAATATT-TATAATATA-AATAT
1 AAAT-ATATTATATAATAAATAATAT
*
1395758 -ATTATATCTAT-TAATATATATAATAT
1 AAATATAT-TATATAATA-A-ATAATAT
* *
1395784 AAATATATTATATCTATTAAT-ATAT
1 AAATATATTATAT-AATAAATAATAT
*
1395809 ATAATATTTCTATATAATAAATAATAT
1 A-AATATAT-TATATAATAAATAATAT
*
1395836 AAAGATATTATATAATAA
1 AAATATATTATATAATAA
1395854 TATATAGTAA
Statistics
Matches: 75, Mismatches: 10, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
22 4 0.05
23 8 0.11
24 1 0.01
25 16 0.21
26 26 0.35
27 18 0.24
28 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (25 bp):
AAATATATTATATAATAAATAATAT
Found at i:1395854 original size:21 final size:22
Alignment explanation
Indices: 1395820--1395881 Score: 67
Period size: 23 Copynumber: 2.9 Consensus size: 22
1395810 TAATATTTCT
*
1395820 ATATAATA-AATAATATAAAG-
1 ATATTATATAATAATATAAAGA
*
1395840 ATATTATATAATAATATATAGTA
1 ATATTATATAATAATATAAAG-A
1395863 ATATTAT-TAATATATATAA
1 ATATTATATAATA-ATATAA
1395882 TAATTTTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 7 0.20
21 11 0.31
22 5 0.14
23 12 0.34
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.40
Consensus pattern (22 bp):
ATATTATATAATAATATAAAGA
Found at i:1395885 original size:21 final size:22
Alignment explanation
Indices: 1395736--1395893 Score: 105
Period size: 21 Copynumber: 7.1 Consensus size: 22
1395726 TAAAACTAAA
* *
1395736 ATAATATTTATAAT-ATA-AAT
1 ATAATATATATAATAATATTAT
* * *
1395756 ATATTATATCTATTAATA-TAT
1 ATAATATATATAATAATATTAT
* *
1395777 ATAATATAAATATATTATATCTAT
1 ATAATATATATA-ATAATAT-TAT
*
1395801 -TAATATATATAAT-ATTTCTAT
1 ATAATATATATAATAATAT-TAT
1395822 ATAATAAATAATATAA-AGATATTAT
1 ATAAT--AT-ATATAATA-ATATTAT
*
1395847 ATAATAATATATAGTAATATTAT
1 ATAAT-ATATATAATAATATTAT
*
1395870 -TAATATATATAATAATTTTAT
1 ATAATATATATAATAATATTAT
1395891 ATA
1 ATA
1395894 TGATTTATGA
Statistics
Matches: 110, Mismatches: 16, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
20 10 0.09
21 36 0.33
22 16 0.15
23 22 0.20
24 9 0.08
25 14 0.13
26 3 0.03
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (22 bp):
ATAATATATATAATAATATTAT
Found at i:1397694 original size:3 final size:3
Alignment explanation
Indices: 1397686--1397718 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
1397676 TAAATATGAA
1397686 ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1397719 ATCTAGTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:1398337 original size:31 final size:33
Alignment explanation
Indices: 1398296--1398357 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
1398286 TTGAATTTTA
1398296 ACACAAAGTTATCA-G-ACATACATTTTAAATG
1 ACACAAAGTTATCAGGCACATACATTTTAAATG
*
1398327 ACACAGAGTTATCAGGCACATACATTTTAAA
1 ACACAAAGTTATCAGGCACATACATTTTAAA
1398358 GTGTTGAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 13 0.46
32 1 0.04
33 14 0.50
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.27
Consensus pattern (33 bp):
ACACAAAGTTATCAGGCACATACATTTTAAATG
Found at i:1398971 original size:23 final size:24
Alignment explanation
Indices: 1398945--1399003 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 24
1398935 TAATTTAATT
*
1398945 TATTTTAAT-GTATTCTTAGTTAA
1 TATTTTAATAGTATTCTTACTTAA
*
1398968 TATTTTTTAATAGTATTCTTACTTAT
1 TA--TTTTAATAGTATTCTTACTTAA
*
1398994 TTTTTTAATA
1 TATTTTAATA
1399004 ATCTAGAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 2 0.07
24 8 0.27
25 7 0.23
26 13 0.43
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (24 bp):
TATTTTAATAGTATTCTTACTTAA
Found at i:1398975 original size:25 final size:25
Alignment explanation
Indices: 1398939--1399003 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
1398929 AATTAATAAT
*
1398939 TTAATTTATTTTAAT-GTATTCTTAG
1 TTAATTT-TTTTAATAGTATTCTTAC
1398964 TTAATATTTTTTAATAGTATTCTTAC
1 TTAAT-TTTTTTAATAGTATTCTTAC
1398990 TT-ATTTTTTTAATA
1 TTAATTTTTTTAATA
1399004 ATCTAGAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
24 10 0.27
25 14 0.38
26 13 0.35
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (25 bp):
TTAATTTTTTTAATAGTATTCTTAC
Found at i:1401637 original size:9 final size:9
Alignment explanation
Indices: 1401612--1401685 Score: 53
Period size: 10 Copynumber: 7.7 Consensus size: 9
1401602 TGGACCTGAA
1401612 AATAAATA-
1 AATAAATAT
1401620 AATAAATAT
1 AATAAATAT
*
1401629 AATAGATAT
1 AATAAATAT
1401638 ATATAACATAT
1 A-ATAA-ATAT
*
1401649 ATGAAATAATAT
1 A--ATA-AATAT
1401661 AATATAA-AT
1 AATA-AATAT
1401670 AATAAATAAT
1 AATAAAT-AT
1401680 AATAAA
1 AATAAA
1401686 CAATACTATA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
8 10 0.19
9 15 0.28
10 16 0.30
11 5 0.09
12 7 0.13
13 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (9 bp):
AATAAATAT
Found at i:1401656 original size:24 final size:22
Alignment explanation
Indices: 1401625--1401704 Score: 80
Period size: 22 Copynumber: 3.6 Consensus size: 22
1401615 AAATAAATAA
1401625 ATAT-AATAGATATATATAACAT
1 ATATAAATA-ATATATATAACAT
1401647 ATATGAAATAATATAATATAA-AT
1 ATAT-AAATAATAT-ATATAACAT
1401670 A-ATAAATAATA-ATA-AACAAT
1 ATATAAATAATATATATAAC-AT
1401690 ACTATAAATAATATA
1 A-TATAAATAATATA
1401705 CATATATATT
Statistics
Matches: 50, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
18 2 0.04
19 3 0.06
20 3 0.06
21 8 0.16
22 16 0.32
23 8 0.16
24 10 0.20
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.33
Consensus pattern (22 bp):
ATATAAATAATATATATAACAT
Found at i:1401660 original size:19 final size:18
Alignment explanation
Indices: 1401613--1401712 Score: 71
Period size: 19 Copynumber: 5.2 Consensus size: 18
1401603 GGACCTGAAA
1401613 ATAAATAA-ATAA-ATAT
1 ATAAATAATATAACATAT
*
1401629 AATAGATATATATAACATAT
1 -ATAAATA-ATATAACATAT
*
1401649 ATGAAATAATATAATATAAAT
1 AT-AAATAATATAACAT--AT
1401670 AATAAATAATAATAAACAATACT
1 -ATAAATAAT-AT-AAC-ATA-T
1401693 ATAAATAATAT-ACATAT
1 ATAAATAATATAACATAT
1401710 ATA
1 ATA
1401713 TTTTTTAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 22
0.72 0.04 0.23
Matches are distributed among these distances:
17 10 0.15
18 4 0.06
19 16 0.24
20 8 0.12
21 11 0.16
22 14 0.21
23 3 0.04
24 2 0.03
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (18 bp):
ATAAATAATATAACATAT
Found at i:1401704 original size:9 final size:9
Alignment explanation
Indices: 1401611--1401704 Score: 59
Period size: 9 Copynumber: 10.1 Consensus size: 9
1401601 TTGGACCTGA
1401611 AAATAA-AT
1 AAATAATAT
1401619 AAATAA-AT
1 AAATAATAT
1401627 ATAATAGATAT
1 A-AATA-ATAT
* *
1401638 ATATAACAT
1 AAATAATAT
*
1401647 ATATGAA-AT
1 AAAT-AATAT
1401656 AATATAATAT
1 AA-ATAATAT
*
1401666 AAATAATAA
1 AAATAATAT
*
1401675 ATAATAATAA
1 A-AATAATAT
*
1401685 ACAATACTAT
1 A-AATAATAT
1401695 AAATAATAT
1 AAATAATAT
1401704 A
1 A
1401705 CATATATATT
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
8 9 0.13
9 31 0.44
10 28 0.39
11 3 0.04
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (9 bp):
AAATAATAT
Found at i:1401738 original size:27 final size:28
Alignment explanation
Indices: 1401700--1401757 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
1401690 ACTATAAATA
1401700 ATATACATATATATT-TTTT-AAAAACT
1 ATATACATATATATTATTTTCAAAAACT
*
1401726 ATATAACATATATTTTATTTTCAAAAACT
1 ATAT-ACATATATATTATTTTCAAAAACT
1401755 ATA
1 ATA
1401758 ATATGTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 4 0.14
27 10 0.36
28 4 0.14
29 10 0.36
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45
Consensus pattern (28 bp):
ATATACATATATATTATTTTCAAAAACT
Found at i:1401766 original size:20 final size:21
Alignment explanation
Indices: 1401743--1401782 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1401733 ATATATTTTA
1401743 TTTTCAAAAACTATA-ATATG
1 TTTTCAAAAACTATATATATG
*
1401763 TTTTCAAAAATTATATATAT
1 TTTTCAAAAACTATATATAT
1401783 TATCTATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (21 bp):
TTTTCAAAAACTATATATATG
Found at i:1401866 original size:17 final size:18
Alignment explanation
Indices: 1401832--1401876 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 18
1401822 ATATTACATG
*
1401832 TTTTCAAAACTATATATA
1 TTTTCAAAAATATATATA
1401850 TTTTCAAAAAT-TATATA
1 TTTTCAAAAATATATATA
1401867 TTTTCAAAAA
1 TTTTCAAAAA
1401877 CCATATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 16 0.62
18 10 0.38
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTTCAAAAATATATATA
Found at i:1401883 original size:19 final size:18
Alignment explanation
Indices: 1401832--1401884 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 18
1401822 ATATTACATG
1401832 TTTTC-AAAACTATATATA
1 TTTTCAAAAAC-ATATATA
*
1401850 TTTTCAAAAA-TTATATA
1 TTTTCAAAAACATATATA
1401867 TTTTCAAAAACCATATAT
1 TTTTCAAAAA-CATATAT
1401885 TATATACATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 16 0.53
18 5 0.17
19 9 0.30
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTTCAAAAACATATATA
Found at i:1402243 original size:81 final size:77
Alignment explanation
Indices: 1402158--1402311 Score: 211
Period size: 78 Copynumber: 1.9 Consensus size: 77
1402148 ACGGATTACT
* *
1402158 CCTTCGTCGTGAAGTTGAGTCAATTTTGAAATGTCTTTGTA-CACGATATCTTTCGTCATGAAGT
1 CCTTCGTCGTGAAGTTGAGTCAATCTTG-AATGTC--TG-AGCACGATATCATTCGTCATGAAGT
1402222 TGAAATCATAGTTGACC
62 TGAAATC-TAGTTGACC
* **
1402239 CCTTCGTCGTGAAGTTGAGTCAATCTTGAATGTCTGAGCATGATATCATTCGTTGTGAAGTTGAA
1 CCTTCGTCGTGAAGTTGAGTCAATCTTGAATGTCTGAGCACGATATCATTCGTCATGAAGTTGAA
1402304 ATCTAGTT
66 ATCTAGTT
1402312 TGATGTCTGG
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
77 6 0.09
78 28 0.42
80 6 0.09
81 27 0.40
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (77 bp):
CCTTCGTCGTGAAGTTGAGTCAATCTTGAATGTCTGAGCACGATATCATTCGTCATGAAGTTGAA
ATCTAGTTGACC
Found at i:1413446 original size:20 final size:20
Alignment explanation
Indices: 1413380--1413469 Score: 56
Period size: 20 Copynumber: 4.3 Consensus size: 20
1413370 AAAGTGGATG
1413380 GATGCACATTCAAGGAATGCATC
1 GATGCACATTCAA-G--TGCATC
** * * *
1413403 GGCGCACCTTCATGGTGTATC
1 GATGCACATTCA-AGTGCATC
1413424 GATGCACATTCAAGTGCATC
1 GATGCACATTCAAGTGCATC
* * *
1413444 GATGTAC-TGTCTAGTGTATC
1 GATGCACAT-TCAAGTGCATC
1413464 GATGCA
1 GATGCA
1413470 TTATGCACTA
Statistics
Matches: 51, Mismatches: 14, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
19 1 0.02
20 26 0.51
21 14 0.27
23 10 0.20
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (20 bp):
GATGCACATTCAAGTGCATC
Found at i:1417322 original size:22 final size:21
Alignment explanation
Indices: 1417280--1417319 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1417270 AAGACTATTT
1417280 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTGAAATA
**
1417301 TCATTTTTGTATTTTGAAA
1 TCATTTTTCAATTTTGAAA
1417320 ATAAAGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTGAAATA
Found at i:1419501 original size:11 final size:12
Alignment explanation
Indices: 1419465--1419496 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
1419455 TTGTAAATTT
1419465 GATTTTTGGCTC
1 GATTTTTGGCTC
1419477 GATTTTTGGCTC
1 GATTTTTGGCTC
1419489 GATTTTTG
1 GATTTTTG
1419497 TTCGAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.12, G:0.25, T:0.53
Consensus pattern (12 bp):
GATTTTTGGCTC
Found at i:1421045 original size:8 final size:8
Alignment explanation
Indices: 1421034--1421063 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
1421024 TGGAAAATGT
1421034 AAAAAAAG
1 AAAAAAAG
1421042 AAAAAAAG
1 AAAAAAAG
1421050 AAAAAAAG
1 AAAAAAAG
1421058 AAAAAA
1 AAAAAA
1421064 TATGAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:1422260 original size:17 final size:16
Alignment explanation
Indices: 1422238--1422306 Score: 50
Period size: 17 Copynumber: 4.1 Consensus size: 16
1422228 TTTGGACCTG
1422238 AAAATAAATAAATAAAT
1 AAAATAAAT-AATAAAT
* *
1422255 AAAATAGAT-ATATAT
1 AAAATAAATAATAAAT
* *
1422270 AACATATATGAAATAATAT
1 AAAATAAAT--AATAA-AT
*
1422289 AATATAAATAATAAAT
1 AAAATAAATAATAAAT
1422305 AA
1 AA
1422307 TAAACAATAC
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
15 12 0.29
16 4 0.10
17 13 0.32
18 3 0.07
19 9 0.22
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (16 bp):
AAAATAAATAATAAAT
Found at i:1422321 original size:50 final size:49
Alignment explanation
Indices: 1422241--1422368 Score: 113
Period size: 50 Copynumber: 2.6 Consensus size: 49
1422231 GGACCTGAAA
*
1422241 ATAAATAAATAAATAA-AATAGATATATATAACATATATGAAATA-ATATA-AT
1 ATAAAT-AATAAATAATAA-ACATATATATAA-ATA-AT-AAATATATATATAT
*
1422292 ATAAATAATAAATAATAAACA-ATACTATAAATAATATATATATATATAT
1 ATAAATAATAAATAATAAACATATA-TATAAATAATAAATATATATATAT
* * *
1422341 ATATATAACTATATAATAAATAT-TATAT
1 ATAAATAA-TAAATAATAAACATATATAT
1422369 TTTCAAAAAC
Statistics
Matches: 66, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
47 4 0.06
48 7 0.11
49 18 0.27
50 29 0.44
51 8 0.12
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (49 bp):
ATAAATAATAAATAATAAACATATATATAAATAATAAATATATATATAT
Found at i:1422340 original size:12 final size:11
Alignment explanation
Indices: 1422262--1422367 Score: 68
Period size: 12 Copynumber: 10.0 Consensus size: 11
1422252 AATAAAATAG
1422262 ATATATATA-A
1 ATATATATATA
*
1422272 CATATATGAAATA
1 -ATATAT-ATATA
1422285 ATATA-ATATA
1 ATATATATATA
1422295 A-ATA-ATA-A
1 ATATATATATA
* *
1422303 ATA-ATAAACA
1 ATATATATATA
*
1422313 ATACTATAAATA
1 ATA-TATATATA
1422325 ATATATATATA
1 ATATATATATA
1422336 TATATATATATA
1 -ATATATATATA
1422348 ACTATATA-ATA
1 A-TATATATATA
1422359 A-ATAT-TATA
1 ATATATATATA
1422368 TTTTCAAAAA
Statistics
Matches: 80, Mismatches: 5, Indels: 22
0.75 0.05 0.21
Matches are distributed among these distances:
8 3 0.04
9 16 0.20
10 9 0.11
11 18 0.22
12 33 0.41
13 1 0.01
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (11 bp):
ATATATATATA
Found at i:1424048 original size:28 final size:30
Alignment explanation
Indices: 1424002--1424059 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
1423992 TAAGGAGTTT
1424002 GAGTTTCTTTTTAGTAATATAAAT-TTTTTAG
1 GAGTTTCTTTTTAG-AATA-AAATATTTTTAG
1424033 GAGTTT-TTTTTA-AATAAAATATTTTTA
1 GAGTTTCTTTTTAGAATAAAATATTTTTA
1424060 TTTAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
27 4 0.15
28 10 0.38
30 6 0.23
31 6 0.23
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (30 bp):
GAGTTTCTTTTTAGAATAAAATATTTTTAG
Found at i:1425452 original size:137 final size:137
Alignment explanation
Indices: 1425206--1425479 Score: 548
Period size: 137 Copynumber: 2.0 Consensus size: 137
1425196 CAAGTCTACG
1425206 GTAGTTGATGACGTGATATATAGATTGAATTGATTTTTTAGTTGAATTAGAGGATCAAATTGAGT
1 GTAGTTGATGACGTGATATATAGATTGAATTGATTTTTTAGTTGAATTAGAGGATCAAATTGAGT
1425271 TTTGAAAGTTCAAGTGCTTAATTAAATTTTTTTTATATGTTTACCATGATATTTTATTTGTGAAT
66 TTTGAAAGTTCAAGTGCTTAATTAAATTTTTTTTATATGTTTACCATGATATTTTATTTGTGAAT
1425336 CCTTTAC
131 CCTTTAC
1425343 GTAGTTGATGACGTGATATATAGATTGAATTGATTTTTTAGTTGAATTAGAGGATCAAATTGAGT
1 GTAGTTGATGACGTGATATATAGATTGAATTGATTTTTTAGTTGAATTAGAGGATCAAATTGAGT
1425408 TTTGAAAGTTCAAGTGCTTAATTAAATTTTTTTTATATGTTTACCATGATATTTTATTTGTGAAT
66 TTTGAAAGTTCAAGTGCTTAATTAAATTTTTTTTATATGTTTACCATGATATTTTATTTGTGAAT
1425473 CCTTTAC
131 CCTTTAC
1425480 AGGGAAGCAA
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.30, C:0.07, G:0.18, T:0.46
Consensus pattern (137 bp):
GTAGTTGATGACGTGATATATAGATTGAATTGATTTTTTAGTTGAATTAGAGGATCAAATTGAGT
TTTGAAAGTTCAAGTGCTTAATTAAATTTTTTTTATATGTTTACCATGATATTTTATTTGTGAAT
CCTTTAC
Found at i:1430944 original size:23 final size:24
Alignment explanation
Indices: 1430918--1430964 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
1430908 CAACTTAACT
1430918 GAGTCAACTCGTTGACT-TTGACC
1 GAGTCAACTCGTTGACTGTTGACC
1430941 GAGTCAACTCGTTGACTGTTGACC
1 GAGTCAACTCGTTGACTGTTGACC
1430965 ATTGACTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (24 bp):
GAGTCAACTCGTTGACTGTTGACC
Found at i:1430970 original size:37 final size:35
Alignment explanation
Indices: 1430929--1431000 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 35
1430919 AGTCAACTCG
1430929 TTGACTTTGACCGAGTC-AACTCGTTGACTGTTGACCA
1 TTGACTTTGACCG-GTCTAAC-CGTTGACT-TTGACCA
*
1430966 TTGACTTTGATCGGTCTAACCGTTGACTTTGACCA
1 TTGACTTTGACCGGTCTAACCGTTGACTTTGACCA
1431001 AAAAAGTCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 7 0.21
36 11 0.33
37 15 0.45
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (35 bp):
TTGACTTTGACCGGTCTAACCGTTGACTTTGACCA
Found at i:1434449 original size:13 final size:13
Alignment explanation
Indices: 1434431--1434455 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1434421 GATTTGGTGG
1434431 GATTTTTTTAACT
1 GATTTTTTTAACT
1434444 GATTTTTTTAAC
1 GATTTTTTTAAC
1434456 GCGATAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (13 bp):
GATTTTTTTAACT
Found at i:1434773 original size:3 final size:3
Alignment explanation
Indices: 1434767--1434793 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1434757 ATAACAAAAA
1434767 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1434794 GGGTCTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:1435234 original size:45 final size:45
Alignment explanation
Indices: 1435184--1435310 Score: 168
Period size: 45 Copynumber: 2.8 Consensus size: 45
1435174 ACCAAATCTA
* *
1435184 AAAGATTGACTCCTCTTTACGATAAAGTCAAGAAGGACAACACT-
1 AAAGATTGACTCCTCTTCACGAGAAAGTCAAGAAGGACAACACTC
* * *
1435228 ATAAGATTGACTCCTCCTCATGAGAAAATCAAGGAA-GACAACACTC
1 A-AAGATTGACTCCTCTTCACGAGAAAGTCAA-GAAGGACAACACTC
*
1435274 AAAGATTGACTCCTCTTCGCGAGAAAGTCAAGAAGGA
1 AAAGATTGACTCCTCTTCACGAGAAAGTCAAGAAGGA
1435311 AAAAGATTGA
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
44 4 0.06
45 62 0.89
46 4 0.06
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.20
Consensus pattern (45 bp):
AAAGATTGACTCCTCTTCACGAGAAAGTCAAGAAGGACAACACTC
Found at i:1435317 original size:38 final size:38
Alignment explanation
Indices: 1435273--1436050 Score: 752
Period size: 38 Copynumber: 19.9 Consensus size: 38
1435263 AGACAACACT
* * * *
1435273 CAAAGATTGACTCCTCTTCGCGAGAAAGTCAAGAAGGAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAA-TAA
*
1435312 -AAAGATTGACTTATCTTCACGAGGAAGTCAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * * *
1435349 CAAAGCTTGACTTCTATTCACGAGAAAGTTAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * * *
1435387 CATTAAAATATTGACTCCACTTCACGAGGGAGTCAAGAATAA
1 C----AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * * * *
1435429 CATTGAAATATTGACTCCTCTTCGCGAGGGAGTCAAGAACAA
1 C----AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
1435471 -AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
1435508 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * * *
1435546 CATTGAAAGATTGAC-ACTTCTTCGCGAGGGAGTCAAGAACAA
1 C----AAAGATTGACTTC-TCTTCACGAGGAAGTCAAGAATAA
* * * * *
1435588 AAAATATTAACTTATGTTCACGAGGAAGTCAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * * * * *
1435626 CAAAGATTGATTGACTCCTCTTCGCAAGGAAATCAGGCATAA
1 C-AA-A--GATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
1435668 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * * * *
1435706 CAGAGATTGAGTTCTCTTCACGCGAAAGTTAAGAATAAGA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAAT-A-A
* * ** * * *
1435746 TTGAAAGATTGACTCCTCTTTGCAAGGGAGTCAAGAACAA
1 --CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* *
1435786 CAAATATTGACTTCTCTTCACGAGGAAGTCAATAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * *
1435824 CAAAGATTGACTTCTCTTCACGAGAAAGTCAATAACAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * *
1435862 CAAAGATTGACTTCTCTTCATGAGAAAGTCAATAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
*
1435900 CAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* * *
1435938 CAAAGATTAATTTCTCTTTACGAGGAAGTCAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* *
1435976 CAAAGATCGACTTCTCTTCACGAGGAAGTTAAGAATAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
* *
1436014 CATTGAAAGATTGACTCCTCTTCACGAGGGAGTCAAG
1 C----AAAGATTGACTTCTCTTCACGAGGAAGTCAAG
1436051 TTGAAGCTTC
Statistics
Matches: 612, Mismatches: 103, Indels: 45
0.81 0.14 0.06
Matches are distributed among these distances:
37 34 0.06
38 392 0.64
39 3 0.00
40 4 0.01
41 4 0.01
42 175 0.29
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (38 bp):
CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA
Found at i:1435411 original size:42 final size:42
Alignment explanation
Indices: 1435182--1436050 Score: 509
Period size: 38 Copynumber: 21.8 Consensus size: 42
1435172 AAACCAAATC
* ** * *
1435182 TAAAAGATTGACTCCTCTTTACGATAAAGTCAAGAAGGACAACAC
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAG-A--ATAACAT
* * * * * * *
1435227 TATAAGATTGACTCCTCCTCATGAGAAAATCAAGGAAGACAACAC
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAA-G-A-ATAACAT
* * * **
1435272 TCAAAGATTGACTCCTCTTCGCGAGAAAGTCAAG-A-AGGA-
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
**
1435311 -AAAAGATTGACTTATCTTCACGAGGAAGTCAAGAATAAC--
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * * * *
1435350 --AAAGCTTGACTTCTATTCACGAGAAAGTTAAGAATAACAT
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * *
1435390 TAAAATATTGACTCCACTTCACGAGGGAGTCAAGAATAACAT
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * * *
1435432 TGAAATATTGACTCCTCTTCGCGAGGGAGTCAAG---AACA-
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
*
1435470 -AAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC--
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
*
1435509 --AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAT
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * * * *
1435549 TGAAAGATTGACACTTCTTCGCGAGGGAGTCAAG---AACA-
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * * ** *
1435587 AAAAATATTAACTTATGTTCACGAGGAAGTCAAGAATAACA-
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * * * * *
1435628 -AAGATTGATTGACTCCTCTTCGCAAGGAAATCAGGCATAAC--
1 TAA-A-AGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
*
1435669 --AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC--
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * * * * * *
1435707 --AGAGATTGAGTTCTCTTCACGCGAAAGTTAAGAATAAGAT
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* ** * * *
1435747 TGAAAGATTGACTCCTCTTTGCAAGGGAGTCAAGAACAAC--
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * *
1435787 --AAATATTGACTTCTCTTCACGAGGAAGTCAATAATAAC--
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* *
1435825 --AAAGATTGACTTCTCTTCACGAGAAAGTC---AATAACA-
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * * *
1435861 -ACAAAGATTGACTTCTCTTCATGAGAAAGTCAATAATAAC--
1 TA-AAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* *
1435901 --AAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAAC--
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * * *
1435939 --AAAGATTAATTTCTCTTTACGAGGAAGTCAAGAATAAC--
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* * *
1435977 --AAAGATCGACTTCTCTTCACGAGGAAGTTAAGAATAACAT
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
* *
1436017 TGAAAGATTGACTCCTCTTCACGAGGGAGTCAAG
1 TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAG
1436051 TTGAAGCTTC
Statistics
Matches: 672, Mismatches: 119, Indels: 69
0.78 0.14 0.08
Matches are distributed among these distances:
35 6 0.01
37 28 0.04
38 372 0.55
39 10 0.01
40 9 0.01
41 12 0.02
42 169 0.25
44 1 0.00
45 62 0.09
46 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (42 bp):
TAAAAGATTGACTCCTCTTCACGAGGAAGTCAAGAATAACAT
Found at i:1435424 original size:80 final size:78
Alignment explanation
Indices: 1435273--1436050 Score: 731
Period size: 80 Copynumber: 9.9 Consensus size: 78
1435263 AGACAACACT
* * * ** *
1435273 CAAAGATTGACTCCTCTTCGCGAGAAAGTCAAG-A-AGGAAAAAGATTGACTTATCTTCACGAGG
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAAAGATTGACTTCTCTTCACGAGG
1435336 AAGTCAAGAATAA
66 AAGTCAAGAATAA
* * * * * * *
1435349 CAAAGCTTGACTTCTATTCACGAGAAAGTTAAGAATAACATTAAAATATTGACTCCACTTCACGA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACA--AAAAGATTGACTTCTCTTCACGA
*
1435414 GGGAGTCAAGAATAA
64 GGAAGTCAAGAATAA
* * * *
1435429 CATTGAAATATTGACTCCTCTTCGCGAGGGAGTCAAG---AACAAAAAGATTGACTTCTCTTCAC
1 C----AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAAAGATTGACTTCTCTTCAC
1435491 GAGGAAGTCAAGAATAA
62 GAGGAAGTCAAGAATAA
* * *
1435508 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACATTGAAAGATTGAC-ACTTCTTCGCG
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACA--AAAAGATTGACTTC-TCTTCACG
* *
1435572 AGGGAGTCAAGAACAA
63 AGGAAGTCAAGAATAA
* * * * * * * * *
1435588 AAAATATTAACTTATGTTCACGAGGAAGTCAAGAATAACAAAGATTGATTGACTCCTCTTCGCAA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAA-A-AGATTGACTTCTCTTCACGA
* * *
1435653 GGAAATCAGGCATAA
64 GGAAGTCAAGAATAA
* * * *
1435668 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC--AGAGATTGAGTTCTCTTCACGCGA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAAAGATTGACTTCTCTTCACGAGG
*
1435731 AAGTTAAGAATAAGA
66 AAGTCAAGAAT-A-A
* * ** * * * *
1435746 TTGAAAGATTGACTCCTCTTTGCAAGGGAGTCAAGAACAAC--AAATATTGACTTCTCTTCACGA
1 --CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAAAGATTGACTTCTCTTCACGA
*
1435809 GGAAGTCAATAATAA
64 GGAAGTCAAGAATAA
* *
1435824 CAAAGATTGACTTCTCTTCACGAGAAAGTC---AATAACAACAAAGATTGACTTCTCTTCATGAG
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA-AAAGATTGACTTCTCTTCACGAG
* *
1435886 AAAGTCAATAATAA
65 GAAGTCAAGAATAA
* * * *
1435900 CAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAAC--AAAGATTAATTTCTCTTTACGAGG
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAAAGATTGACTTCTCTTCACGAGG
1435963 AAGTCAAGAATAA
66 AAGTCAAGAATAA
* * * *
1435976 CAAAGATCGACTTCTCTTCACGAGGAAGTTAAGAATAACATTGAAAGATTGACTCCTCTTCACGA
1 CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACA--AAAAGATTGACTTCTCTTCACGA
*
1436041 GGGAGTCAAG
64 GGAAGTCAAG
1436051 TTGAAGCTTC
Statistics
Matches: 568, Mismatches: 103, Indels: 58
0.78 0.14 0.08
Matches are distributed among these distances:
73 5 0.01
75 28 0.05
76 204 0.36
77 2 0.00
78 10 0.02
79 44 0.08
80 246 0.43
81 5 0.01
84 24 0.04
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (78 bp):
CAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAAAGATTGACTTCTCTTCACGAGG
AAGTCAAGAATAA
Found at i:1435673 original size:118 final size:116
Alignment explanation
Indices: 1435276--1436050 Score: 667
Period size: 118 Copynumber: 6.6 Consensus size: 116
1435266 CAACACTCAA
* * *
1435276 AGATTGACTCCTCTTCGCGA-GAAAGTCAAGAAGGAA-AAAGATTGACTTATCTTCACGAGGAAG
1 AGATTGACTCCTCTTCGCAAGGAAA-TCAAGAA-TAACAAAGATTGACTTCTCTTCACGAGGAAG
* * * * *
1435339 TCAAGAATAACAAAGCTTGACTTCTATTCACGAGAAAGTTAAGAATAACATTAAA
64 TCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACA--AAG
* * * * * * * * * *
1435394 ATATTGACTCCACTTCACGAGGGAGTCAAGAATAACATTGAAATATTGACTCCTCTTCGCGAGGG
1 AGATTGACTCCTCTTCGCAAGGAAATCAAGAATAAC----AAAGATTGACTTCTCTTCACGAGGA
*
1435459 AGTCAAGAACAA-AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC-AA-
62 AGTCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* * * * * *
1435511 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACATTGAAAGATTGAC-ACTTCTTCGCGAGG
1 AGATTGACTCCTCTTCGCAAGGAAATCAAGAATAAC----AAAGATTGACTTC-TCTTCACGAGG
* * * * * * *
1435575 GAGTCAAGAACAAAAAATATTAACTTATGTTCACGAGGAAGTCAAGAATAACAAAG
61 AAGTCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* *
1435631 ATTGATTGACTCCTCTTCGCAAGGAAATCAGGCATAACAAAGATTGACTTCTCTTCACGAGGAAG
1 A--GATTGACTCCTCTTCGCAAGGAAATCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAG
* * * * * *
1435696 TCAAGAATAACAGAGATTGAGTTCTCTTCACGCGAAAGTTAAGAATAAGATTGAA-
64 TCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACA---AAG
* * * * *
1435751 AGATTGACTCCTCTTTGCAAGGGAGTCAAGAACAACAAATATTGACTTCTCTTCACGAGGAAGTC
1 AGATTGACTCCTCTTCGCAAGGAAATCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTC
* * * *
1435816 AATAATAACAAAGATTGACTTCTCTTCACGAGAAAGTCAATAACAAC-AA-
66 AAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* * * *
1435865 AGATTGACTTCTCTT--CATGAGAAAGTCAATAATAACAAAGATTGACTTCTCTTCACGAGAAAG
1 AGATTGACTCCTCTTCGCAAG-GAAA-TCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAG
* * *
1435928 TCAAGAATAACAAAGATTAATTTCTCTTTACGAGGAAGTCAAGAATAAC-AA-
64 TCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* * * * * * * *
1435979 AGATCGACTTCTCTTCACGAGGAAGTTAAGAATAACATTGAAAGATTGACTCCTCTTCACGAGGG
1 AGATTGACTCCTCTTCGCAAGGAAATCAAGAATAAC----AAAGATTGACTTCTCTTCACGAGGA
1436044 AGTCAAG
62 AGTCAAG
1436051 TTGAAGCTTC
Statistics
Matches: 547, Mismatches: 86, Indels: 48
0.80 0.13 0.07
Matches are distributed among these distances:
112 3 0.01
113 2 0.00
114 117 0.21
115 3 0.01
116 3 0.01
117 71 0.13
118 245 0.45
119 5 0.01
120 2 0.00
121 36 0.07
122 60 0.11
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (116 bp):
AGATTGACTCCTCTTCGCAAGGAAATCAAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTC
AAGAATAACAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
Found at i:1437867 original size:27 final size:30
Alignment explanation
Indices: 1437837--1437915 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 30
1437827 TTCTTTTTTC
1437837 TTTTTTTTTCTTATTTT-TCA-TCTAT-CT
1 TTTTTTTTTCTTATTTTCTCATTCTATCCT
* *
1437864 TTTTTCTTTCTTTCTTTTCTCATTCTATCCT
1 TTTTTTTTTC-TTATTTTCTCATTCTATCCT
*
1437895 TTCTTTTTTCTTTCATTTTCT
1 TTTTTTTTTC-TT-ATTTTCT
1437916 TCTCTTTCTT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
27 9 0.21
28 6 0.14
29 3 0.07
30 5 0.12
31 13 0.31
32 6 0.14
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (30 bp):
TTTTTTTTTCTTATTTTCTCATTCTATCCT
Found at i:1437879 original size:15 final size:15
Alignment explanation
Indices: 1437824--1438101 Score: 161
Period size: 14 Copynumber: 19.3 Consensus size: 15
1437814 ACTTGATTTA
1437824 TTTTTCTTT-TTTCT
1 TTTTTCTTTCTTTCT
*
1437838 TTTTT-TTTC-TT-A
1 TTTTTCTTTCTTTCT
* *
1437850 TTTTTC-ATCTATCT
1 TTTTTCTTTCTTTCT
1437864 TTTTTCTTTCTTTCT
1 TTTTTCTTTCTTTCT
* * *
1437879 TTTCTCATTCTATCCT
1 TTTTTCTTTCT-TTCT
1437895 TTCTTT-TTTCTTTC-
1 TT-TTTCTTTCTTTCT
*
1437909 ATTTTCTTCTCTTTC-
1 TTTTTCTT-TCTTTCT
1437924 TTTTTCTTTTCTTTC-
1 TTTTTC-TTTCTTTCT
1437939 TTTTTCTTT-TTTCT
1 TTTTTCTTTCTTTCT
* *
1437953 TTTCTCTTTCTATCT
1 TTTTTCTTTCTTTCT
*
1437968 TTTCTCTTCTCTTTC-
1 TTTTTCTT-TCTTTCT
1437983 TTTTTCTTTC--TCT
1 TTTTTCTTTCTTTCT
*
1437996 TTCTATCTTT-TATCTCT
1 TT-TTTCTTTCT-T-TCT
1438013 TTTTTC-TT-TTTCT
1 TTTTTCTTTCTTTCT
*
1438026 CTTCTTC-TT-TTTCT
1 -TTTTTCTTTCTTTCT
*
1438040 ATATTTTC-TCCTTTCT
1 -T-TTTTCTTTCTTTCT
1438056 TTTTTCTTT-TTTCT
1 TTTTTCTTTCTTTCT
* *
1438070 CTTTTCTTT-TTTCA
1 TTTTTCTTTCTTTCT
1438084 TTTTTC-TTC-TTCT
1 TTTTTCTTTCTTTCT
1438097 TTTTT
1 TTTTT
1438102 TCTCTTATTC
Statistics
Matches: 211, Mismatches: 29, Indels: 49
0.73 0.10 0.17
Matches are distributed among these distances:
12 9 0.04
13 28 0.13
14 74 0.35
15 69 0.33
16 24 0.11
17 7 0.03
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTCTTTCTTTCT
Found at i:1437918 original size:20 final size:19
Alignment explanation
Indices: 1437824--1438078 Score: 99
Period size: 20 Copynumber: 13.5 Consensus size: 19
1437814 ACTTGATTTA
*
1437824 TTTTTC-TT-TTTTCTTTT
1 TTTTTCTTTCTTTTCTTCT
*
1437841 TTTTTCTTAT-TTTTCATCT
1 TTTTTCTT-TCTTTTCTTCT
*
1437860 ATCTTT-TTTC-TTTCTTTCT
1 -TTTTTCTTTCTTTTC-TTCT
* * * *
1437879 TTTCTCATTCTATCCTTTCT
1 TTTTTCTTTCTTTTC-TTCT
1437899 TTTTTCTTTCATTTTCTTC-
1 TTTTTCTTTC-TTTTCTTCT
*
1437918 TCTTTCTTT-TTCTT-TTCT
1 TTTTTCTTTCTT-TTCTTCT
*
1437936 TTCTT-TTTCTTTT-TTCT
1 TTTTTCTTTCTTTTCTTCT
*
1437953 TTTCTCTTTCTATCTT-TTCT
1 TTTTTCTTTCT-T-TTCTTCT
* *
1437973 CTTCTCTTTCTTTTTCTT-T
1 TTTTTCTTTC-TTTTCTTCT
* * *
1437992 CTCTTTCTATCTTTTATCTCT
1 -TTTTTCTTTCTTTTCT-TCT
*
1438013 TTTTTCTTT-TTCTCTTCTT
1 TTTTTCTTTCTTTTCTTC-T
* * *
1438032 CTTTTTCTATATTTTCTCCT
1 -TTTTTCTTTCTTTTCTTCT
1438052 TTCTTT-TTTCTTTT-TTCT
1 TT-TTTCTTTCTTTTCTTCT
*
1438070 CTTTTCTTT
1 TTTTTCTTT
1438079 TTTCATTTTT
Statistics
Matches: 179, Mismatches: 35, Indels: 47
0.69 0.13 0.18
Matches are distributed among these distances:
17 26 0.15
18 30 0.17
19 46 0.26
20 66 0.37
21 11 0.06
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTTCTTTCTTTTCTTCT
Found at i:1437957 original size:74 final size:79
Alignment explanation
Indices: 1437864--1438064 Score: 225
Period size: 74 Copynumber: 2.5 Consensus size: 79
1437854 TCATCTATCT
1437864 TTTTTCTTTCTTTCTTTTCTCATTCTATCCTTTCTTTTTTCTTTCATTTTC-TTCTC-T-T-TCT
1 TTTTTCTTT-TTTCTTTTCTCATTCTATCCTTTCTTTTTTCTTTCATTTTCTTTCTCTTCTATCT
1437925 TTT-TCT-TTTCTTTC
65 TTTATCTCTTT-TTTC
* * * * *
1437939 TTTTTCTTTTTTCTTTTCTCTTTCTATCTTTTCTCTTCTCTTTCTTTTTCTTTCTCTTTCTATCT
1 TTTTTCTTTTTTCTTTTCTCATTCTATCCTTTCTTTTTTCTTTCATTTTCTTTCTC-TTCTATCT
1438004 TTTATCTCTTTTTTC
65 TTTATCTCTTTTTTC
* * * *
1438019 TTTTTCTCTTCTTCTTTTTCTATATTTTCTCCTTTCTTTTTTCTTT
1 TTTTTCT-TTTTTC-TTTTCT-CATTCTATCCTTTCTTTTTTCTTT
1438065 TTTCTCTTTT
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
74 36 0.35
75 14 0.14
77 1 0.01
78 1 0.01
79 6 0.06
80 14 0.14
81 8 0.08
82 6 0.06
83 17 0.17
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.73
Consensus pattern (79 bp):
TTTTTCTTTTTTCTTTTCTCATTCTATCCTTTCTTTTTTCTTTCATTTTCTTTCTCTTCTATCTT
TTATCTCTTTTTTC
Found at i:1438079 original size:20 final size:20
Alignment explanation
Indices: 1437824--1438114 Score: 122
Period size: 21 Copynumber: 13.8 Consensus size: 20
1437814 ACTTGATTTA
1437824 TTTTTC-TTTTT-TCTTTT-
1 TTTTTCTTTTTTCTCTTTTC
*
1437841 TTTTTCTTATTTT-TCATCTATC
1 TTTTTCTT-TTTTCTC-T-TTTC
*
1437863 TTTTTTCTTTCTT-TCTTTTC
1 -TTTTTCTTTTTTCTCTTTTC
** *
1437883 TCATTCTATCCTTTCT-TTTT-
1 TTTTTCT-T-TTTTCTCTTTTC
*
1437903 TCTTTCATTTTCTTCTC-TTTC
1 TTTTTC-TTTT-TTCTCTTTTC
1437924 TTTTTCTTTTCTT-TCTTTTTC
1 TTTTTCTTTT-TTCTC-TTTTC
*
1437945 TTTTT-TCTTTTCTCTTTCTATC
1 TTTTTCTTTTTTCTC-TT-T-TC
1437967 TTTTCTCTTCTCTTTCT-TTTTC
1 TTTT-TCTT-T-TTTCTCTTTTC
* *
1437989 TTTCTCTTTCTATCT-TTTATC
1 TTTTTCTTT-TTTCTCTTT-TC
*
1438010 TCTTTTTTCTTTTTCTCTTCTTC
1 T-TTTTCT-TTTTTCTCTT-TTC
*
1438033 TTTTTCTATATTTTCTCCTTTC
1 TTTTTCT-T-TTTTCTCTTTTC
1438055 TTTTTTCTTTTTTCTCTTTTC
1 -TTTTTCTTTTTTCTCTTTTC
*
1438076 TTTTTTCATTTTTCTTCTTCTT-
1 -TTTTTCTTTTTTC-TCTT-TTC
*
1438098 TTTTTCTCTTATTCTCT
1 TTTTTCT-TTTTTCTCT
1438115 CTCATTTTTA
Statistics
Matches: 218, Mismatches: 24, Indels: 60
0.72 0.08 0.20
Matches are distributed among these distances:
17 6 0.03
18 1 0.00
19 16 0.07
20 42 0.19
21 65 0.30
22 44 0.20
23 34 0.16
24 4 0.02
25 1 0.00
26 5 0.02
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTCTTTTTTCTCTTTTC
Found at i:1438120 original size:35 final size:34
Alignment explanation
Indices: 1438019--1438123 Score: 89
Period size: 35 Copynumber: 3.1 Consensus size: 34
1438009 CTCTTTTTTC
* *
1438019 TTTTTC-TCTTCTTCTTTTTCT-ATATT-TTCTCC
1 TTTTTCTTCTTCTT-TTTTTCTCTTATTCTTCTCA
*
1438051 TTTCTT-TT-TTC-TTTTTTCTCTT-TTCTTTTTTCA
1 TTT-TTCTTCTTCTTTTTTTCTCTTATTC--TTCTCA
1438084 TTTTTCTTCTTCTTTTTTTCTCTTATTCTCTCTCA
1 TTTTTCTTCTTCTTTTTTTCTCTTATTCT-TCTCA
1438119 TTTTT
1 TTTTT
1438124 ATCTCTATAA
Statistics
Matches: 58, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
30 9 0.16
31 2 0.03
32 8 0.14
33 12 0.21
34 4 0.07
35 20 0.34
36 3 0.05
ACGTcount: A:0.05, C:0.22, G:0.00, T:0.73
Consensus pattern (34 bp):
TTTTTCTTCTTCTTTTTTTCTCTTATTCTTCTCA
Found at i:1438123 original size:43 final size:41
Alignment explanation
Indices: 1437891--1438101 Score: 123
Period size: 36 Copynumber: 5.3 Consensus size: 41
1437881 TCTCATTCTA
* * *
1437891 TCCTTTCTTTTTTCTTTCATTTTCTTC-TCTTTCT-T-TTTCTT
1 TCCTTTCTTTTTTCTTT--TTCTCTTCTTTTTTCTATATTT-TC
* *
1437932 TTCTTTC-TTTTTCTTTTT-TCTT-TTCTCTTTCTATCTTTTC
1 TCCTTTCTTTTTTCTTTTTCTCTTCTT-T-TTTCTATATTTTC
* * * *
1437972 T-C-TTC-TCTTTCTTTTTCT-TTC-TCTTTCTATCTTTTA
1 TCCTTTCTTTTTTCTTTTTCTCTTCTTTTTTCTATATTTTC
1438008 T-C--TCTTTTTTCTTTTTCTCTTCTTCTTTTTCTATATTTTC
1 TCCTTTCTTTTTTCTTTTTCTCTTC-T-TTTTTCTATATTTTC
1438048 TCCTTTCTTTTTTCTTTTTTCTCTTTTCTTTTTTC-AT-TTTTC
1 TCCTTTCTTTTTTC-TTTTTCTC--TTCTTTTTTCTATATTTTC
*
1438090 TTC-TTCTTTTTT
1 TCCTTTCTTTTTT
1438102 TCTCTTATTC
Statistics
Matches: 141, Mismatches: 11, Indels: 36
0.75 0.06 0.19
Matches are distributed among these distances:
35 2 0.01
36 26 0.18
37 8 0.06
38 18 0.13
39 7 0.05
40 25 0.18
41 19 0.13
42 7 0.05
43 11 0.08
44 14 0.10
45 1 0.01
46 3 0.02
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (41 bp):
TCCTTTCTTTTTTCTTTTTCTCTTCTTTTTTCTATATTTTC
Found at i:1445714 original size:9 final size:8
Alignment explanation
Indices: 1445682--1445720 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
1445672 TTTATCCTGC
1445682 ATAAAATA
1 ATAAAATA
1445690 ATAAAA-A
1 ATAAAATA
1445697 ATATAAATA
1 ATA-AAATA
1445706 ATAATAATA
1 ATAA-AATA
1445715 ATAAAA
1 ATAAAA
1445721 CGGGTCTCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 4 0.14
8 12 0.43
9 12 0.43
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
ATAAAATA
Found at i:1446542 original size:31 final size:31
Alignment explanation
Indices: 1446507--1446588 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
1446497 ATGCGGCCCT
*
1446507 GAGATCTTTCTTGGGTAGGCCCTGTGACCCC
1 GAGATCTTTCTTGGGTAGGCCCCGTGACCCC
* * *
1446538 GAGAT-TTCTCTTGAGTAGACCCCGTGGCCCC
1 GAGATCTT-TCTTGGGTAGGCCCCGTGACCCC
* *
1446569 GAGAACTTTCTTGGATAGGC
1 GAGATCTTTCTTGGGTAGGC
1446589 TCTCATGCCC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
30 2 0.05
31 37 0.90
32 2 0.05
ACGTcount: A:0.17, C:0.27, G:0.28, T:0.28
Consensus pattern (31 bp):
GAGATCTTTCTTGGGTAGGCCCCGTGACCCC
Found at i:1447674 original size:17 final size:17
Alignment explanation
Indices: 1447654--1447691 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
1447644 AGATTATAGA
*
1447654 AAATAATATTTTATTTT
1 AAATAATATTTTATCTT
1447671 AAATAATATTTTATCTT
1 AAATAATATTTTATCTT
1447688 AAAT
1 AAAT
1447692 TTAAATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
AAATAATATTTTATCTT
Found at i:1447943 original size:60 final size:59
Alignment explanation
Indices: 1447856--1448001 Score: 161
Period size: 60 Copynumber: 2.4 Consensus size: 59
1447846 ATTAAAGAGT
* * *
1447856 AAAG-TACAAAACTGGTCCCCGACTATAGTATATTACTTTATTGAGTCTACT-AACTATTA
1 AAAGTTACAAAA-TGGTCCCCGACTATAGGACACTACTTTATTGAGTC-ACTCAACTATTA
* * * * * *
1447915 AATGTTACAAAATGATCCTCCGACTATAGGGCGCTACTTTGTTGAGTCCCTCAACTATTA
1 AAAGTTACAAAATGGTCC-CCGACTATAGGACACTACTTTATTGAGTCACTCAACTATTA
1447975 AAAGTTACAAAATGGTCACCCGACTAT
1 AAAGTTACAAAATGGTC-CCCGACTAT
1448002 TCATTATATT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
59 10 0.14
60 61 0.85
61 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (59 bp):
AAAGTTACAAAATGGTCCCCGACTATAGGACACTACTTTATTGAGTCACTCAACTATTA
Found at i:1448819 original size:23 final size:23
Alignment explanation
Indices: 1448793--1448840 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
1448783 ATAAAGTACA
*
1448793 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
1448816 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
1448839 AT
1 AT
1448841 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:1449286 original size:21 final size:22
Alignment explanation
Indices: 1449216--1449291 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 22
1449206 GATAGACACT
* *
1449216 TTACA-ATATAACCACTACCTA
1 TTACATATATAAACGCTACCTA
*
1449237 TTACATTATATAAACGATACCTA
1 TTACA-TATATAAACGCTACCTA
**
1449260 TTACAT-TATAAGGGCTACCTA
1 TTACATATATAAACGCTACCTA
1449281 TTACATCATAT
1 TTACAT-ATAT
1449292 GTTTACCTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
21 23 0.51
22 1 0.02
23 21 0.47
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACATATATAAACGCTACCTA
Found at i:1449749 original size:39 final size:39
Alignment explanation
Indices: 1449698--1449820 Score: 228
Period size: 39 Copynumber: 3.2 Consensus size: 39
1449688 AAGTTGTAGA
1449698 TTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGGAT
1 TTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGGAT
1449737 TTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGGAT
1 TTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGGAT
* *
1449776 TTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGGAT
1 TTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGGAT
1449815 TTTGAT
1 TTTGAT
1449821 GAGCATCGGA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.17, C:0.14, G:0.20, T:0.49
Consensus pattern (39 bp):
TTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGGAT
Found at i:1450390 original size:25 final size:25
Alignment explanation
Indices: 1450362--1450412 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
1450352 TTAATCCAAA
*
1450362 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
1450387 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
1450412 T
1 T
1450413 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:1450704 original size:21 final size:22
Alignment explanation
Indices: 1450679--1450730 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
1450669 ACACTTTACA
*
1450679 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
1450702 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
1450725 ATATAA
1 ATATAA
1450731 GGGGTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:1450715 original size:23 final size:23
Alignment explanation
Indices: 1450689--1450751 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1450679 ATATAACCAC
1450689 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1450712 TACCTATTACATTATATAAGGGG
1 TACCTATTACATTATATAAACGA
*
1450735 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1450752 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1451134 original size:21 final size:22
Alignment explanation
Indices: 1451109--1451160 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
1451099 ACACTTTACA
*
1451109 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
1451132 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
1451155 ATATAA
1 ATATAA
1451161 GGGGTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:1451145 original size:23 final size:23
Alignment explanation
Indices: 1451119--1451181 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1451109 ATATAACCAC
1451119 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1451142 TACCTATTACATTATATAAGGGG
1 TACCTATTACATTATATAAACGA
*
1451165 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1451182 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1451404 original size:430 final size:431
Alignment explanation
Indices: 1450444--1452986 Score: 4826
Period size: 430 Copynumber: 5.9 Consensus size: 431
1450434 TTTGAATTAT
* *
1450444 TTGATTTAATAATTTCATTTGCACAAAAAAATTATTTGATTGTTTTGATA-TTTAT-AAATAATA
1 TTGATTTAATAATTTCATTTGCAC-AAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTA
* *
1450507 TTTAGAATTTTTAATTTAATAATAATATATATCGTAACGT-AAAAATAAATCATTATACGCCTAT
65 TTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTAT
1450571 AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
130 AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
1450636 AAAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACAT
195 AAAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACAT
1450701 TATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATA
260 TATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATA
1450766 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAACTTATGTAATTTATGT
325 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
1450830 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
390 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
1450872 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
*
1450937 TTAAAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
66 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
1451002 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
131 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
1451067 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
196 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
1451132 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
261 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
1451197 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
326 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
1451262 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
391 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
1451303 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
1451368 TTAGAATTTTTAATTTAATAATAATATATA-CGTAACGTAAAAAATAAATCATTAGACGCCTATA
66 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
1451432 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
131 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
1451497 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
196 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
1451562 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
261 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
1451627 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
326 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
1451692 TCAA-TTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
391 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
1451732 TTGATTTAATAATTTCATTTGCACAAAAAA-TATTTGATTG-TTTTATATTTTATAAAATATTAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
*
1451795 TTAAAATTTTTAATTTAATAATAATATATACCGTAACGT-AAAAATAAATCATTAGACGCCTATA
66 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
*
1451859 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTGAATTAATGTTTTCCACAGTGA
131 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
1451924 AAAAAGTATCGACACTTTTAT-AAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
196 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
1451988 ATATAAACGATACCTATTACATTATATAA-GGGTACCTATTACATCATATGTTTACCTATTATAT
261 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
*
1452052 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTGTGTAATTTATGTT
326 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
1452117 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
391 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
1452158 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTG-TTTT-TATTTTATAAAATATTAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
1452221 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAAATAAATCATTAGACGCCTAT
66 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGT-AAAAAATAAATCATTAGACGCCTAT
1452286 AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
130 AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
1452351 AAAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACAT
195 AAAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACAT
1452416 TATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATA
260 TATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATA
*
1452481 TTGAAAGTGTCCATACATTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
325 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
1452546 TTCAATTTTTTTAACAGTG-TTCATGTTTTCCACCTACAATA
390 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
1452587 TTGATTTAATAATTTCATTTGCACAAAAAATTA-TTGATTGTTTTTATATTTTATAAAATATTAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
1452651 TTAGAA-TTTTAA-TT--TAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
66 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
1452712 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
131 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
1452777 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTAC---
196 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
1452839 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
261 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
1452904 TGAAAGTGTCCATACTTTTTAT-AAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
326 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
1452968 TCAATTTTTTTAACAGTGT
391 TCAATTTTTTTAACAGTGT
1452987 ACTGCGAATT
Statistics
Matches: 2087, Mismatches: 14, Indels: 34
0.98 0.01 0.02
Matches are distributed among these distances:
421 60 0.03
422 86 0.04
425 256 0.12
426 215 0.10
427 200 0.10
428 166 0.08
429 248 0.12
430 694 0.33
431 162 0.08
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (431 bp):
TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATA
Found at i:1451564 original size:21 final size:22
Alignment explanation
Indices: 1451539--1451590 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
1451529 ACACTTTACA
*
1451539 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
1451562 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
1451585 ATATAA
1 ATATAA
1451591 GGGGTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:1451575 original size:23 final size:23
Alignment explanation
Indices: 1451549--1451611 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1451539 ATATAACCAC
1451549 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1451572 TACCTATTACATTATATAAGGGG
1 TACCTATTACATTATATAAACGA
*
1451595 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1451612 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1452001 original size:23 final size:22
Alignment explanation
Indices: 1451965--1452036 Score: 90
Period size: 23 Copynumber: 3.2 Consensus size: 22
1451955 ACACTTTACA
*
1451965 ATATAACCACTACCTATTACATT
1 ATATAACGA-TACCTATTACATT
1451988 ATATAAACGATACCTATTACATT
1 ATAT-AACGATACCTATTACATT
* * *
1452011 ATATAAGGGTACCTATTACATC
1 ATATAACGATACCTATTACATT
1452033 ATAT
1 ATAT
1452037 GTTTACCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
22 19 0.43
23 21 0.48
24 4 0.09
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (22 bp):
ATATAACGATACCTATTACATT
Found at i:1452026 original size:22 final size:23
Alignment explanation
Indices: 1451975--1452036 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 23
1451965 ATATAACCAC
1451975 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
1451998 TACCTATTACATTATAT-AAGGG
1 TACCTATTACATTATATAAACGA
*
1452020 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1452037 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 19 0.53
23 17 0.47
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1452211 original size:860 final size:861
Alignment explanation
Indices: 1450444--1452986 Score: 4824
Period size: 855 Copynumber: 3.0 Consensus size: 861
1450434 TTTGAATTAT
* *
1450444 TTGATTTAATAATTTCATTTGCACAAAAAAATTATTTGATTGTTTTGATA-TTTAT-AAATAATA
1 TTGATTTAATAATTTCATTTGCAC-AAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTA
* *
1450507 TTTAGAATTTTTAATTTAATAATAATATATATCGTAACGT-AAAAATAAATCATTATACGCCTAT
65 TTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTAT
1450571 AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
130 AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
1450636 AAAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACAT
195 AAAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACAT
1450701 TATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATA
260 TATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATA
1450766 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAACTTATGTAATTTATGT
325 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
1450830 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCA
390 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCA
1450895 CAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAAAATTTTTAATTTAATAATA
455 CAAAAAA-TATTTGATTGTTTTTATATTTTATAAAATATTATTTAAAATTTTTAATTTAATAATA
1450960 ATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
519 ATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
1451025 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATCGACACTTTTATAA
584 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATCGACACTTTTATAA
1451090 AAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
649 AAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
1451155 ATATAAGGGGTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATA
714 ATATAAGGGGTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATA
1451220 AAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCA
779 AAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCA
1451285 TGTTTTCCACCTACAATA
844 TGTTTTCCACCTACAATA
1451303 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
1451368 TTAGAATTTTTAATTTAATAATAATATATA-CGTAACGTAAAAAATAAATCATTAGACGCCTATA
66 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
1451432 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
131 ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
1451497 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
196 AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
1451562 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
261 ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
1451627 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
326 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
1451692 TCAA-TTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC
391 TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC
1451756 AAAAAATATTTGATTG-TTTTATATTTTATAAAATATTATTTAAAATTTTTAATTTAATAATAAT
456 AAAAAATATTTGATTGTTTTTATATTTTATAAAATATTATTTAAAATTTTTAATTTAATAATAAT
1451820 ATATACCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
521 ATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
*
1451884 CACTCAAAAGATAACCTTGAATTAATGTTTTCCACAGTGAAAAAAGTATCGACACTTTTAT-AAA
586 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATCGACACTTTTATAAAA
1451948 AGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTAT
651 AGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTAT
1452013 ATAA-GGGTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
716 ATAAGGGGTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
*
1452077 AAGGATCGATACTTTTTTTAAAACTTGTGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATG
781 AAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATG
1452142 TTTTCCACCTACAATA
846 TTTTCCACCTACAATA
1452158 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTG-TTTT-TATTTTATAAAATATTAT
1 TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
1452221 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAAATAAATCATTAGACGCCTAT
66 TTAGAATTTTTAATTTAATAATAATATATACCGTAACGT-AAAAAATAAATCATTAGACGCCTAT
1452286 AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
130 AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
1452351 AAAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACAT
195 AAAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACAT
1452416 TATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATA
260 TATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATA
*
1452481 TTGAAAGTGTCCATACATTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
325 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
1452546 TTCAATTTTTTTAACAGTG-TTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCA
390 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCA
*
1452610 CAAAAAAT-TATTGATTGTTTTTATATTTTATAAAATATTATTTAGAA-TTTTAA-TT--TAATA
455 CAAAAAATAT-TTGATTGTTTTTATATTTTATAAAATATTATTTAAAATTTTTAATTTAATAATA
1452670 ATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
519 ATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
1452735 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATCGACACTTTTATAA
584 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATCGACACTTTTATAA
1452800 AAAGGATAGACACTTTACAATATAACCACTACCTATTAC---ATATAAACGATACCTATTACATT
649 AAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
1452862 ATATAAGGGGTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTAT-
714 ATATAAGGGGTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATA
1452926 AAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGT
779 AAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGT
1452987 ACTGCGAATT
Statistics
Matches: 1663, Mismatches: 9, Indels: 32
0.98 0.01 0.02
Matches are distributed among these distances:
851 89 0.05
852 78 0.05
853 158 0.10
854 55 0.03
855 536 0.32
856 113 0.07
857 110 0.07
858 86 0.05
859 47 0.03
860 360 0.22
861 31 0.02
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (861 bp):
TTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTAT
TTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATA
ATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGA
AAAAAGTATCGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATT
ATATAAACGATACCTATTACATTATATAAGGGGTACCTATTACATCATATGTTTACCTATTATAT
TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTT
TCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC
AAAAAATATTTGATTGTTTTTATATTTTATAAAATATTATTTAAAATTTTTAATTTAATAATAAT
ATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATCGACACTTTTATAAAA
AGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTAT
ATAAGGGGTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
AAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATG
TTTTCCACCTACAATA
Found at i:1452231 original size:29 final size:29
Alignment explanation
Indices: 1452182--1452247 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
1452172 TCATTTGCAC
* * * *
1452182 AAAAAATTATTTGATTGTTTTTATTTTAT
1 AAAATATTATTTGAATGTTTTAATTTAAT
1452211 AAAATATTATTTAGAAT-TTTTAATTTAAT
1 AAAATATTATTT-GAATGTTTTAATTTAAT
1452240 AATAATAT
1 AA-AATAT
1452248 ATACCGTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 23 0.74
30 8 0.26
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (29 bp):
AAAATATTATTTGAATGTTTTAATTTAAT
Found at i:1452419 original size:21 final size:22
Alignment explanation
Indices: 1452394--1452445 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
1452384 ACACTTTACA
*
1452394 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
1452417 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
1452440 ATATAA
1 ATATAA
1452446 GGGGTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:1452430 original size:23 final size:23
Alignment explanation
Indices: 1452404--1452466 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1452394 ATATAACCAC
1452404 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1452427 TACCTATTACATTATATAAGGGG
1 TACCTATTACATTATATAAACGA
*
1452450 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1452467 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1452844 original size:20 final size:20
Alignment explanation
Indices: 1452814--1452860 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
1452804 GATAGACACT
1452814 TTACA-ATATAACCACTACCTA
1 TTACATATA-AACCA-TACCTA
*
1452835 TTACATATAAACGATACCTA
1 TTACATATAAACCATACCTA
1452855 TTACAT
1 TTACAT
1452861 TATATAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 12 0.50
21 9 0.38
22 3 0.12
ACGTcount: A:0.43, C:0.23, G:0.02, T:0.32
Consensus pattern (20 bp):
TTACATATAAACCATACCTA
Found at i:1452875 original size:23 final size:22
Alignment explanation
Indices: 1452819--1452888 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 22
1452809 ACACTTTACA
*
1452819 ATATAACCACTACCTATTACA-T
1 ATATAACGA-TACCTATTACATT
1452841 ATA-AACGATACCTATTACATT
1 ATATAACGATACCTATTACATT
* * *
1452862 ATATAAGGGGTACCTATTACATC
1 ATATAA-CGATACCTATTACATT
1452885 ATAT
1 ATAT
1452889 GTTTACCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
20 11 0.27
21 8 0.20
22 5 0.12
23 17 0.41
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (22 bp):
ATATAACGATACCTATTACATT
Found at i:1456583 original size:181 final size:179
Alignment explanation
Indices: 1455980--1456800 Score: 1238
Period size: 181 Copynumber: 4.6 Consensus size: 179
1455970 AAGATAACCT
1455980 TAAATCTGGGTTCCGA-GTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCC
1 TAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCC
1456044 AATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCT
66 AATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCG-T
1456109 CATAAAACCGGTATTTTATACCGGTTATATTACAAAATTATCTATTACATTA
130 CAT-AAACCGGTATTTTATA-CGGTTATATTACAAAATTATCTATTACATTA
1456161 TAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCC
1 TAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCC
** * **
1456226 AATCTGAACATAAAGTACCGACACAATATTAGAAA--GTCGATAAAGGACGATAAAGGTATTCG-
66 AATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTG-TAGACCTATTCGT
* **
1456288 --TAGACCGGTATTTTCATA-ATTATATTATTACAAAATTATCTATTACATT-
130 CATAAACCGGTATTTT-ATACGGT-TA-TATTACAAAATTATCTATTACATTA
1456337 TAAATCTGGGGTTCCGATGTGTAAATG-CGACACTTTTTTAAATGGTATCGACACATTTTTCTTC
1 TAAATCT-GGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTC
1456401 CAATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGC
65 CAATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCG-
1456466 TCATAAAACCGGTATTTTATACCGGTTATATTACAAAATTATCTATTACATTA
129 TCAT-AAACCGGTATTTTATA-CGGTTATATTACAAAATTATCTATTACATTA
* *
1456519 TAACTATGGGTTCCGATGTGTAAATGTCGACAC-TTTTTAAATGGTATCGACACATTTTTCTTCC
1 TAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCC
* *
1456583 AATCTGGACATAAAGTA-CGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGTC
66 AATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGTC
1456647 ATAAACCGGTATATTTATACGGTTATATTACAAAA-TATCTATTACATTA
131 ATAAACCGGTAT-TTTATACGGTTATATTACAAAATTATCTATTACATTA
* *
1456696 TAAATCTGGGTTCCGATGTTTTTTCAA--TCGACACTTTTTTAAATGGTATCGACACATTTTTCT
1 TAAATCTGGGTTCCGATG---TGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCT
* * * * *
1456759 TTCATTCTGGACATAAAGTACAGACACAATATTAAAAAGTGT
63 TCCAATCTGAACATAAAGTACCGACACAATATTAGAAAGTGT
1456801 GAAAACTTTG
Statistics
Matches: 589, Mismatches: 28, Indels: 47
0.89 0.04 0.07
Matches are distributed among these distances:
175 1 0.00
176 94 0.16
177 86 0.15
178 45 0.08
179 56 0.10
180 79 0.13
181 119 0.20
182 108 0.18
183 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (179 bp):
TAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCC
AATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGTC
ATAAACCGGTATTTTATACGGTTATATTACAAAATTATCTATTACATTA
Found at i:1456688 original size:358 final size:357
Alignment explanation
Indices: 1455979--1456800 Score: 1293
Period size: 358 Copynumber: 2.3 Consensus size: 357
1455969 AAAGATAACC
1455979 TTAAATCTGGGTTCCGA-GTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTC
1 TTAAATCTGGGTTCCGATGTGTAAATG-CGACACTTTTTTAAATGGTATCGACACATTTTTCTTC
1456043 CAATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGC
65 CAATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGC
*
1456108 TCATAAAACCGGTATTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTT
130 TCATAAAACCGGTATTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATATGGGTT
1456173 CCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATA
195 CCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATA
** *
1456238 AAGTACCGACACAATATTAGAAAGTCGATAAAGGACGATAAAGGTATTCGTAGACCGGTATTTTC
260 AAGTACCGACACAATATTAGAAAGTCGATAAAGGACGATAAACCTATTCGTAAACCGGTATTTTC
*
1456303 ATAATTATATTATTACAAAATTATCTATTACAT
325 ATAAGTATATTATTACAAAATTATCTATTACAT
1456336 TTAAATCTGGGGTTCCGATGTGTAAATGCGACACTTTTTTAAATGGTATCGACACATTTTTCTTC
1 TTAAATCT-GGGTTCCGATGTGTAAATGCGACACTTTTTTAAATGGTATCGACACATTTTTCTTC
1456401 CAATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGC
65 CAATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGC
*
1456466 TCATAAAACCGGTATTTTATACCGGTTATATTACAAAATTATCTATTACATTATAACTATGGGTT
130 TCATAAAACCGGTATTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATATGGGTT
*
1456531 CCGATGTGTAAATGTCGACAC-TTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATA
195 CCGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATA
* ** *
1456595 AAGTA-CGACACAATATTAGAAAGTGTCGATATAGGTTG-TAGACCTATTCGTCATAAACCGGTA
260 AAGTACCGACACAATATTAGAAA--GTCGATAAAGGACGATAAACCTATTCG---TAAACCGGTA
*
1456658 TATTT-ATACGGT-TA-TATTACAAAA-TATCTATTACAT
320 T-TTTCATA-AGTATATTATTACAAAATTATCTATTACAT
* *
1456694 TATAAATCTGGGTTCCGATGTTTTTTCAAT-CGACACTTTTTTAAATGGTATCGACACATTTTTC
1 T-TAAATCTGGGTTCCGATG---TGTAAATGCGACACTTTTTTAAATGGTATCGACACATTTTTC
* * * * *
1456758 TTTCATTCTGGACATAAAGTACAGACACAATATTAAAAAGTGT
62 TTCCAATCTGAACATAAAGTACCGACACAATATTAGAAAGTGT
1456801 GAAAACTTTG
Statistics
Matches: 433, Mismatches: 19, Indels: 23
0.91 0.04 0.05
Matches are distributed among these distances:
356 17 0.04
357 64 0.15
358 230 0.53
359 26 0.06
360 87 0.20
361 9 0.02
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (357 bp):
TTAAATCTGGGTTCCGATGTGTAAATGCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCC
AATCTGAACATAAAGTACCGACACAATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCT
CATAAAACCGGTATTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATATGGGTTC
CGATGTGTAAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAA
AGTACCGACACAATATTAGAAAGTCGATAAAGGACGATAAACCTATTCGTAAACCGGTATTTTCA
TAAGTATATTATTACAAAATTATCTATTACAT
Found at i:1457995 original size:3 final size:3
Alignment explanation
Indices: 1457987--1458053 Score: 55
Period size: 3 Copynumber: 22.7 Consensus size: 3
1457977 CTTGTTTGGG
* * * **
1457987 ATC ATC ATC TTC GTC ATC ATC ATC ATC ATC GTC ATC ATC -TC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * *
1458034 AGC TTC ATC GTC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC AT
1458054 ATCTGTTAAA
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.24, C:0.34, G:0.07, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:1458010 original size:18 final size:18
Alignment explanation
Indices: 1457987--1458030 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
1457977 CTTGTTTGGG
*
1457987 ATCATCATCTTCGTCATC
1 ATCATCATCATCGTCATC
1458005 ATCATCATCATCGTCATC
1 ATCATCATCATCGTCATC
1458023 ATC-TCATC
1 ATCATCATC
1458031 GCCAGCTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 5 0.20
18 20 0.80
ACGTcount: A:0.25, C:0.34, G:0.05, T:0.36
Consensus pattern (18 bp):
ATCATCATCATCGTCATC
Found at i:1459744 original size:89 final size:87
Alignment explanation
Indices: 1459593--1459768 Score: 334
Period size: 89 Copynumber: 2.0 Consensus size: 87
1459583 TTTTGGGATC
1459593 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAAA
1 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGG-AAA
1459658 AAAGTATCGACACAAAACTATATT
65 AAAGTATCGACAC-AAACTATATT
1459682 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAAA
1 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAAA
1459747 AAGTATCGACACAAACTATATT
66 AAGTATCGACACAAACTATATT
1459769 AGTGTCGACA
Statistics
Matches: 87, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
87 10 0.11
88 16 0.18
89 61 0.70
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (87 bp):
GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAAA
AAGTATCGACACAAACTATATT
Found at i:1460053 original size:192 final size:195
Alignment explanation
Indices: 1459682--1460488 Score: 1272
Period size: 191 Copynumber: 4.2 Consensus size: 195
1459672 AAACTATATT
1459682 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAAA
1 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACC-TGTTTTCCATTCATTCTGGGAAAA
*
1459747 AAGTATCGACACAAACTATATTAGTGTCGACACTTATTTAGACATATTCTCAT-AAAAAACCGGT
65 AAGTATCGACACAAACTATATTAGTGTCGACACTTATTTAGACATATTCTC-TCATAAAACCGGT
*
1459811 ATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTTTACTTTGGG-TCG-TGA-TTTGGG
129 ATAATTGTACCGGTTAGATTGAAAAATTA-ATATTACATTATACTTTGGGTTCGATGATTTTGGG
1459873 ATC
193 ATC
*
1459876 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCT-TATTCCATTCATTCTGGGAAAAA
1 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTGTTTTCCATTCATTCTGGGAAAAA
*
1459940 AGTATCGACACAAACTATATTAGTG-CGACACATTATTTAGACATATTCTCTCATAAAACCGGTG
66 AGTATCGACACAAACTATATTAGTGTCGACAC-TTATTTAGACATATTCTCTCATAAAACCGGTA
*
1460004 TAA-TGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTGGATGATTTTGGG
130 TAATTGTACCGGTTAGATTGAAAAATTA-ATATTACATTATAC-TTTGGGTTCGATGATTTTGGG
1460068 ATC
193 ATC
1460071 GACAC-TTTT-TATATGGATCG--ACTTTATGGGTGCACCTG-TTTCCA-TCATTCTGGGAAAAA
1 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTGTTTTCCATTCATTCTGGG-AAAA
1460130 AAGTATCGACACAAACTATATTAG-GTCGACAC--ATTTAGACATATTCTCTCAT-AAA-CGGTA
65 AAGTATCGACACAAACTATATTAGTGTCGACACTTATTTAGACATATTCTCTCATAAAACCGGTA
*
1460190 TAATTGTACCGGTTAGATTGAAAAA-T--TATTACATTATACTTTGGGTTGGATGATTTTGGGAT
130 TAATTGTACCGGTTAGATTGAAAAATTAATATTACATTATACTTTGGGTTCGATGATTTTGGGAT
1460252 C
195 C
1460253 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGG-AAA
1 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACC-TGTTTTCCATTCATTCTGGGAAAA
1460317 AAGTATCG-CAC-AACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGT
65 AAGTATCGACACAAACTATATTAGTGTCGACAC-TTATTTAGACATATTCTCTCATAAAACCGGT
1460380 ATAATTGTA-CGGTTAGATTGAAAAATTAATATTACATTATACTTTTGGGTTCGATGATTTTGGG
129 ATAATTGTACCGGTTAGATTGAAAAATTAATATTACATTATAC-TTTGGGTTCGATGATTTTGGG
*
1460444 ATT
193 ATC
1460447 GACACTTTTT-TATATGGATCGACAC-TTATGGGTGCACCTGTT
1 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTGTT
1460489 GGCCATATTG
Statistics
Matches: 577, Mismatches: 9, Indels: 57
0.90 0.01 0.09
Matches are distributed among these distances:
182 29 0.05
183 17 0.03
184 11 0.02
185 11 0.02
186 35 0.06
187 37 0.06
188 26 0.05
189 30 0.05
190 30 0.05
191 119 0.21
192 97 0.17
193 42 0.07
194 79 0.14
195 14 0.02
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (195 bp):
GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTGTTTTCCATTCATTCTGGGAAAAA
AGTATCGACACAAACTATATTAGTGTCGACACTTATTTAGACATATTCTCTCATAAAACCGGTAT
AATTGTACCGGTTAGATTGAAAAATTAATATTACATTATACTTTGGGTTCGATGATTTTGGGATC
Found at i:1460459 original size:377 final size:381
Alignment explanation
Indices: 1459679--1460488 Score: 1295
Period size: 377 Copynumber: 2.1 Consensus size: 381
1459669 ACAAAACTAT
1459679 ATTGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGA
1 ATTGACACTTTTT-TATATGGATCG--ACTTTATGGGTGCACC-TG-TTTCCATTCATTCTGGGA
1459744 AAAAAGTATCGACACAAACTATATTAGTGTCGACACTTATTTAGACATATTCTCATAAAAAACCG
61 AAAAAGTATCGACACAAACTATATTAGTGTCGACAC-TATTTAGACATATTCTCATAAAAAACCG
*
1459809 GTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTTTACTTTGGGTCGTGATTTGGGA
125 GTATAATTGTACCGGTTAGATTGAAAAATT--ATATTACATTATACTTTGGGTCGTGATTTGGGA
1459874 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTATTCCATTCATTCTGGGAAAA
188 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTATTCCATTCATTCTGGGAAAA
*
1459939 AAGTATCGACACAAACTATATTAGTGCGACACATTATTTAGACATATTCTCTCATAAAACCGGTG
253 AAGTATCGACACAAACTATATTAGTGCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
*
1460004 TAATGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTGGATGATTTTGGG
318 TAATGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
*
1460068 ATCGACAC-TTTTTATATGGATCGACTTTATGGGTGCACCTGTTTCCA-TCATTCTGGGAAAAAA
1 ATTGACACTTTTTTATATGGATCGACTTTATGGGTGCACCTGTTTCCATTCATTCTGGG-AAAAA
* *
1460131 AGTATCGACACAAACTATATTAG-GTCGACAC-ATTTAGACATATTCTC-TCATAAA-CGGTATA
65 AGTATCGACACAAACTATATTAGTGTCGACACTATTTAGACATATTCTCATAAAAAACCGGTATA
*
1460192 ATTGTACCGGTTAGATTGAAAAA-T-TATTACATTATACTTTGGGTTGGATGATTTTGGGATCGA
130 ATTGTACCGGTTAGATTGAAAAATTATATTACATTATACTTTGGG-TCG-TGA-TTTGGGATCGA
*
1460255 CACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGG-AAAAA
192 CACTTTTTATATATGGATCGACACTTTATGGGTGCACC-T-TATTCCATTCATTCTGGGAAAAAA
1460319 GTATCG-CAC-AACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAT
255 GTATCGACACAAACTATATTAGTG-CGACACATTATTTAGACATATTCTCTCATAAAACCGGTAT
1460382 AATTGTA-CGGTTAGATTGAAAAATTA-ATATTACATTATACTTTTGGGTTCGATGATTTTGGG
319 AA-TGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
*
1460444 ATTGACACTTTTTTATATGGATCGACACTTATGGGTGCACCTGTT
1 ATTGACACTTTTTTATATGGATCGAC-TTTATGGGTGCACCTGTT
1460489 GGCCATATTG
Statistics
Matches: 401, Mismatches: 10, Indels: 31
0.91 0.02 0.07
Matches are distributed among these distances:
374 18 0.04
375 2 0.00
376 58 0.14
377 130 0.32
378 63 0.16
379 22 0.05
380 16 0.04
382 18 0.04
383 34 0.08
384 2 0.00
385 16 0.04
387 11 0.03
388 4 0.01
389 7 0.02
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (381 bp):
ATTGACACTTTTTTATATGGATCGACTTTATGGGTGCACCTGTTTCCATTCATTCTGGGAAAAAA
GTATCGACACAAACTATATTAGTGTCGACACTATTTAGACATATTCTCATAAAAAACCGGTATAA
TTGTACCGGTTAGATTGAAAAATTATATTACATTATACTTTGGGTCGTGATTTGGGATCGACACT
TTTTATATATGGATCGACACTTTATGGGTGCACCTTATTCCATTCATTCTGGGAAAAAAGTATCG
ACACAAACTATATTAGTGCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAATGTAC
CGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
Found at i:1460631 original size:18 final size:17
Alignment explanation
Indices: 1460605--1460650 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 17
1460595 TTATATTCAC
1460605 ATACAAAAATATAAATCGT
1 ATAC-AAAATATAAATC-T
1460624 ATACAAAATTATAAATCT
1 ATACAAAA-TATAAATCT
1460642 ATACAAAAT
1 ATACAAAAT
1460651 TAACTCGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 1 0.04
18 13 0.50
19 12 0.46
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.28
Consensus pattern (17 bp):
ATACAAAATATAAATCT
Found at i:1460651 original size:18 final size:19
Alignment explanation
Indices: 1460605--1460652 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
1460595 TTATATTCAC
*
1460605 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
1460624 ATACAAAATTATAAATC-T
1 ATACAAAATTATAAATCGT
1460642 ATACAAAATTA
1 ATACAAAATTA
1460653 ACTCGACATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.29
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:1464732 original size:16 final size:18
Alignment explanation
Indices: 1464711--1464751 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
1464701 ATATATCCGG
1464711 TATCATT-TTACCGG-TT
1 TATCATTGTTACCGGTTT
1464727 TATCATTTGTTACCGGTTT
1 TATCA-TTGTTACCGGTTT
1464746 TATCAT
1 TATCAT
1464752 AATTTTACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.23
17 2 0.09
18 8 0.36
19 7 0.32
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTGTTACCGGTTT
Found at i:1464769 original size:20 final size:18
Alignment explanation
Indices: 1464715--1464760 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
1464705 ATCCGGTATC
1464715 ATTTTACCGGTTTATCAT
1 ATTTTACCGGTTTATCAT
1464733 -TTGTTACCGGTTTTATCAT
1 ATT-TTACCGG-TTTATCAT
1464752 AATTTTACC
1 -ATTTTACC
1464761 TGTTATATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 2 0.08
18 7 0.29
19 8 0.33
20 5 0.21
21 2 0.08
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (18 bp):
ATTTTACCGGTTTATCAT
Found at i:1465794 original size:39 final size:37
Alignment explanation
Indices: 1465732--1465840 Score: 101
Period size: 38 Copynumber: 2.8 Consensus size: 37
1465722 TTTTATGTTG
* * * *
1465732 AATTTAAAATATTACGAAGAATGTAACATCTTTCGTTGTC
1 AATTGAAAATGTTACGAA-AATGTAACAT-TTTCGGT-TA
* *
1465772 AATTGAAAATGTTATGAAAATGTAATATTTTCGGTTA
1 AATTGAAAATGTTACGAAAATGTAACATTTTCGGTTA
* * *
1465809 AATTGAAAATTGTTAGGAAAAAGTAAAATTTT
1 AATTGAAAA-TGTTACGAAAATGTAACATTTT
1465841 AAGTTATGTC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
37 10 0.17
38 25 0.42
39 9 0.15
40 15 0.25
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.38
Consensus pattern (37 bp):
AATTGAAAATGTTACGAAAATGTAACATTTTCGGTTA
Found at i:1466714 original size:3 final size:3
Alignment explanation
Indices: 1466706--1466746 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
1466696 TGAAAAGAAT
1466706 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1466747 TTGGGTACTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1467676 original size:2 final size:2
Alignment explanation
Indices: 1467669--1467702 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1467659 TATTTATTTG
1467669 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1467703 GAATATGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1477501 original size:74 final size:74
Alignment explanation
Indices: 1477380--1477527 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
1477370 AATTCATTAA
1477380 AAAGATATTTTTAGGTATTCAACCTTTCTAACCGAAAGGTCGATGGAGACATCAAATCAAATTGT
1 AAAGATATTTTTAGGTATTCAACCTTTCTAACCGAAAGGTCGATGGAGACATCAAATCAAATTGT
1477445 TTTAAAACC
66 TTTAAAACC
1477454 AAAGATATTTTTAGGTATTCAACCTTTCTAACCGAAAGGTCGATGGAGACATCAAATCAAATTGT
1 AAAGATATTTTTAGGTATTCAACCTTTCTAACCGAAAGGTCGATGGAGACATCAAATCAAATTGT
1477519 TTTAAAACC
66 TTTAAAACC
1477528 TAAATTTCAC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (74 bp):
AAAGATATTTTTAGGTATTCAACCTTTCTAACCGAAAGGTCGATGGAGACATCAAATCAAATTGT
TTTAAAACC
Found at i:1482531 original size:2 final size:2
Alignment explanation
Indices: 1482524--1482564 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1482514 AATATGAAAT
1482524 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1482565 TATTGAAGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1483794 original size:2 final size:2
Alignment explanation
Indices: 1483787--1483825 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1483777 GTGCACTCGC
1483787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1483826 ATTAAAAGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1488741 original size:25 final size:25
Alignment explanation
Indices: 1488713--1488773 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
1488703 ATTATTTTTT
*
1488713 CTACCGAAAATGTTAATATTGGGCG
1 CTACCGAAAATGTTAATATTAGGCG
* **
1488738 CTACCTAAAATGTTAATATTAGGTT
1 CTACCGAAAATGTTAATATTAGGCG
1488763 CTACCGAAAAT
1 CTACCGAAAAT
1488774 TAGTTAGCGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (25 bp):
CTACCGAAAATGTTAATATTAGGCG
Found at i:1489503 original size:21 final size:21
Alignment explanation
Indices: 1489457--1489503 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
1489447 CATCACTATA
1489457 TATC-AAAACAGTATCGACAC
1 TATCTAAAACAGTATCGACAC
* *
1489477 --TCTAAAAGAGTATCGATAC
1 TATCTAAAACAGTATCGACAC
1489496 TATCTAAA
1 TATCTAAA
1489504 TGAATAATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
18 2 0.09
19 14 0.64
21 6 0.27
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.26
Consensus pattern (21 bp):
TATCTAAAACAGTATCGACAC
Found at i:1503422 original size:130 final size:127
Alignment explanation
Indices: 1503185--1503426 Score: 360
Period size: 130 Copynumber: 1.9 Consensus size: 127
1503175 ATGGCTACAA
* *
1503185 GAAAGTGCTTGCCTAGGCAAGCTTGAGTAACAAGGTACACATTTTGAAAACTTAGTCAAGCAAGC
1 GAAAGTGCTTGCCAAGGCAAGCTTGAATAACAAGGTA-ACATTTTGAAAACTTAGTCAAGCAAGC
*
1503250 AGCAACTAGTAGTCAGGTTTTCTGGGTTAATGAATGAAAAGTAGAATAACACCGCAGCTGCAT
65 AGCAAATAGTAGTCAGGTTTTCTGGGTTAATGAATGAAAAGTAGAATAACACCGCAGCTGCAT
* *
1503313 GAAAGTTCTTGCGAAGGCAAGCTTGAATAACAAGGT-ACATTTTGAAAACTTACTCAGTCAAGCA
1 GAAAGTGCTTGCCAAGGCAAGCTTGAATAACAAGGTAACATTTTGAAAAC-T--T-AGTCAAGCA
* * *
1503377 AGCAGCAAATAGTTGTCAGGTTTTCTGGGTTCATGAATGACAAGTAGAAT
62 AGCAGCAAATAGTAGTCAGGTTTTCTGGGTTAATGAATGAAAAGTAGAAT
1503427 CTTGGTTTTA
Statistics
Matches: 102, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
126 13 0.13
127 1 0.01
128 32 0.31
129 1 0.01
130 55 0.54
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (127 bp):
GAAAGTGCTTGCCAAGGCAAGCTTGAATAACAAGGTAACATTTTGAAAACTTAGTCAAGCAAGCA
GCAAATAGTAGTCAGGTTTTCTGGGTTAATGAATGAAAAGTAGAATAACACCGCAGCTGCAT
Found at i:1504876 original size:29 final size:29
Alignment explanation
Indices: 1504834--1504896 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
1504824 CAATAATCGA
1504834 ATCAGACCGCATTATGTACCCCCTACCGC
1 ATCAGACCGCATTATGTACCCCCTACCGC
1504863 ATCAGACCGCATTATGTACCCCCTACCGC
1 ATCAGACCGCATTATGTACCCCCTACCGC
1504892 ATCAG
1 ATCAG
1504897 GCTGCCAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.25, C:0.40, G:0.14, T:0.21
Consensus pattern (29 bp):
ATCAGACCGCATTATGTACCCCCTACCGC
Found at i:1509026 original size:45 final size:45
Alignment explanation
Indices: 1508967--1509084 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 45
1508957 ATGCGGATAT
* * * * *
1508967 ATGAGAACAAGATATAAGTTATGTGATATTAACCTATGTGATTAC
1 ATGAGAATATGATATAAGCTATGTGATATTAACCTAAGCGATTAC
* * *
1509012 ATGAGAATATGATATAAGCTATGTGTTATTGACCTAAGCGATTAT
1 ATGAGAATATGATATAAGCTATGTGATATTAACCTAAGCGATTAC
** *
1509057 ATGATCATGTGATATAAGCTATGTGATA
1 ATGAGAATATGATATAAGCTATGTGATA
1509085 AGGATCTATG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.35
Consensus pattern (45 bp):
ATGAGAATATGATATAAGCTATGTGATATTAACCTAAGCGATTAC
Found at i:1509102 original size:45 final size:45
Alignment explanation
Indices: 1509021--1509116 Score: 113
Period size: 45 Copynumber: 2.1 Consensus size: 45
1509011 CATGAGAATA
* **
1509021 TGATATAAGCTATGTGTTATTGACCTAAGCGATTATATGATC-ATG
1 TGATATAAGCTATGTGATAAGGACCTAAGCGATTATATG-TCTATG
* * * *
1509066 TGATATAAGCTATGTGATAAGGATCTATGTGCTTATATGTCTATG
1 TGATATAAGCTATGTGATAAGGACCTAAGCGATTATATGTCTATG
1509111 TGATAT
1 TGATAT
1509117 TGAACTACGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 2 0.05
45 41 0.95
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (45 bp):
TGATATAAGCTATGTGATAAGGACCTAAGCGATTATATGTCTATG
Found at i:1509133 original size:31 final size:31
Alignment explanation
Indices: 1509075--1509133 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
1509065 GTGATATAAG
* * *
1509075 CTATGTGATAAGGATCTATGTGCTTATATGT
1 CTATGTGATAAGGAACTACGTGATTATATGT
**
1509106 CTATGTGATATTGAACTACGTGATTATA
1 CTATGTGATAAGGAACTACGTGATTATA
1509134 CGAATATGTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (31 bp):
CTATGTGATAAGGAACTACGTGATTATATGT
Found at i:1509255 original size:23 final size:23
Alignment explanation
Indices: 1509229--1509283 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
1509219 GTTCTATGCA
1509229 GTCCTTCGGGACAATACTATGTG
1 GTCCTTCGGGACAATACTATGTG
* * *
1509252 GTCCTTCGAGACATTTCTATGTG
1 GTCCTTCGGGACAATACTATGTG
1509275 G-CACTTCGG
1 GTC-CTTCGG
1509284 TGTAATTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 1 0.04
23 26 0.96
ACGTcount: A:0.18, C:0.24, G:0.25, T:0.33
Consensus pattern (23 bp):
GTCCTTCGGGACAATACTATGTG
Found at i:1509296 original size:24 final size:24
Alignment explanation
Indices: 1509264--1509339 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
1509254 CCTTCGAGAC
1509264 ATTTCTATGTGGCACTTCGGTGTA
1 ATTTCTATGTGGCACTTCGGTGTA
*
1509288 ATTTCTATGCT-GCACTTCGGTGCA
1 ATTTCTATG-TGGCACTTCGGTGTA
* * *
1509312 ATTTCTACGCGGCACTTCAGTGTA
1 ATTTCTATGTGGCACTTCGGTGTA
1509336 ATTT
1 ATTT
1509340 ATACGAGCTG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
24 44 0.98
25 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (24 bp):
ATTTCTATGTGGCACTTCGGTGTA
Done.