genome.fa.s1177.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001177.1 Hibiscus syriacus cultivar Beakdansim tig00002343_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103201

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793--835	21	2.0	23	90	9	72	25	4	0	69	1.07
4044--4079	17	2.1	17	100	0	72	22	8	11	58	1.59
5576--5618	18	2.4	18	100	0	86	41	16	4	37	1.69
7343--7387	22	2.0	22	100	0	90	26	35	20	17	1.95
10633--10756	62	2.0	62	98	0	239	28	30	15	25	1.96
11946--12232	120	2.4	120	92	1	470	41	12	8	37	1.74
11832--12296	120	3.9	120	83	4	419	41	13	8	36	1.76
12764--12790	5	5.4	5	100	0	54	18	0	81	0	0.69
13146--13207	27	2.3	27	81	8	72	20	6	32	40	1.78
13295--13350	28	2.2	26	84	12	71	33	12	1	51	1.50
16477--16557	6	12.8	6	71	12	56	19	4	2	72	1.14
16485--16535	18	2.5	22	84	15	74	19	7	1	70	1.21
20960--21022	19	3.4	18	80	8	65	63	0	1	34	1.04
30863--30971	24	4.5	24	68	4	76	22	11	14	51	1.75
36240--36284	23	2.0	23	86	8	65	4	31	2	62	1.27
38421--38489	36	1.9	36	82	11	88	50	4	1	43	1.30
38416--38565	81	1.8	82	85	4	214	43	7	3	46	1.48
38502--38621	35	3.4	34	73	18	111	45	5	6	42	1.54
38407--38588	81	2.2	81	80	6	208	42	7	4	45	1.51
43697--43739	3	14.3	3	100	0	86	67	0	0	32	0.91
44710--44767	26	2.3	26	88	8	84	37	1	0	60	1.07
46219--46254	2	18.0	2	94	0	63	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46441--46492	22	2.3	22	81	18	63	44	1	0	53	1.11
46891--46997	42	2.6	41	76	8	117	30	17	24	27	1.97
47139--47225	42	2.1	42	84	4	113	33	19	21	25	1.97
46886--47635	233	3.2	232	89	1	1137	33	15	17	33	1.92
47345--47443	41	2.4	42	79	1	101	29	21	23	26	1.99
47575--47654	41	2.0	41	82	5	99	25	20	22	32	1.98
47429--47796	190	1.9	191	89	2	571	33	16	15	35	1.90
47770--47808	20	2.0	20	94	0	69	20	23	33	23	1.97
48033--48139	42	2.6	41	75	8	117	29	19	24	26	1.98
47574--48607	234	4.4	232	84	4	1246	32	18	17	31	1.94
48888--48928	17	2.5	17	96	4	75	26	9	17	46	1.79
66733--66769	19	1.9	19	88	0	56	2	27	2	67	1.17
67479--67527	3	16.0	3	87	12	73	65	0	2	32	1.04
67822--67851	10	3.0	10	95	0	51	53	20	16	10	1.71
67824--67870	24	2.0	24	82	0	58	61	17	10	10	1.55
72872--72909	9	4.2	9	100	0	76	34	21	34	10	1.87
73055--73097	13	3.4	12	78	12	50	18	2	13	65	1.38
88131--88260	32	4.1	31	75	8	118	16	27	26	29	1.97
90751--90827	3	26.0	3	78	19	74	29	0	3	66	1.10
90750--90823	11	6.8	11	70	21	50	28	0	4	67	1.09
90745--90831	18	5.5	15	72	17	68	31	0	3	65	1.09
94260--94320	32	1.9	32	93	3	106	13	16	11	59	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96308--96355	11	4.1	11	80	15	51	77	4	14	4	1.08
97193--97250	24	2.4	23	81	13	64	36	10	3	50	1.54
97519--97555	4	9.5	4	83	16	51	51	21	0	27	1.48
98106--98196	36	2.6	34	81	8	105	28	17	12	41	1.85
98608--98704	36	2.7	35	82	7	108	30	17	12	39	1.87
98629--98704	35	2.1	36	85	2	100	36	18	10	34	1.85
98797--99158	130	2.8	128	80	7	369	25	28	19	27	1.98
99318--99392	3	26.0	3	89	5	111	29	0	2	68	1.04
99845--99887	22	2.0	22	82	13	54	48	11	25	13	1.77
102140--102248	29	3.5	31	79	10	123	42	11	9	37	1.72
102140--102262	32	3.9	33	77	12	109	40	11	9	38	1.74

Tables:   1

The End!