Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001178.1 Hibiscus syriacus cultivar Beakdansim tig00002344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55896
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:4478 original size:2 final size:2
Alignment explanation
Indices: 4471--4528 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
4461 TGTGTTGTTA
4471 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4513 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
4529 GCTCACCCTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11655 original size:21 final size:21
Alignment explanation
Indices: 11623--11665 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
11613 ATTGCCACAC
11623 GAGAATTACCTTGGACCCCAT
1 GAGAATTACCTTGGACCCCAT
*
11644 GAGAACTT-CCTTGGAGCCCAT
1 GAGAA-TTACCTTGGACCCCAT
11665 G
1 G
11666 CACATTTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (21 bp):
GAGAATTACCTTGGACCCCAT
Found at i:14635 original size:10 final size:10
Alignment explanation
Indices: 14620--14645 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14610 CAAAGAAGGG
14620 CAAGAACCTC
1 CAAGAACCTC
14630 CAAGAACCTC
1 CAAGAACCTC
14640 CAAGAA
1 CAAGAA
14646 AAGAGGCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.35, G:0.12, T:0.08
Consensus pattern (10 bp):
CAAGAACCTC
Found at i:19624 original size:15 final size:16
Alignment explanation
Indices: 19578--19617 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
19568 GACCCTGCAC
* *
19578 AAAATAAATGAGAAAT
1 AAAATAAATTAAAAAT
19594 -AAATAAATTAAAAAT
1 AAAATAAATTAAAAAT
19609 AAAATAAAT
1 AAAATAAAT
19618 AATAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAATAAATTAAAAAT
Found at i:19668 original size:24 final size:26
Alignment explanation
Indices: 19626--19673 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
19616 ATAATAATAT
*
19626 ATATATATATAAACGTTTTCAAAAAC
1 ATATATATATAAACATTTTCAAAAAC
*
19652 ATATA-ATATAAA-ATTTTTAAAA
1 ATATATATATAAACATTTTCAAAA
19674 TGTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 7 0.35
26 5 0.25
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (26 bp):
ATATATATATAAACATTTTCAAAAAC
Found at i:19669 original size:25 final size:25
Alignment explanation
Indices: 19626--19673 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
19616 ATAATAATAT
*
19626 ATATATATATAAACGTTTTCAAAAAC
1 ATATATATATAAAAGTTTT-AAAAAC
*
19652 ATATA-ATATAAAATTTTTAAAA
1 ATATATATATAAAAGTTTTAAAA
19674 TGTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 11 0.55
26 5 0.25
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (25 bp):
ATATATATATAAAAGTTTTAAAAAC
Found at i:19794 original size:33 final size:35
Alignment explanation
Indices: 19691--19826 Score: 129
Period size: 38 Copynumber: 3.8 Consensus size: 35
19681 TTTTATTAAA
* * *
19691 AAAAACTATATATTATATATAATTTCAAAATGGTTTTT
1 AAAAACTATATATTATATA-ATTTTCAAAA-CG-TTTC
*
19729 AAAAA-T-TATATTATATAAATGTTTTCATAACGTTTTC
1 AAAAACTATATATTATAT-AA--TTTTCAAAACG-TTTC
*
19766 -AAAAGTATATATTATAT-ATTTT-AAAACGTTTC
1 AAAAACTATATATTATATAATTTTCAAAACGTTTC
19798 AAAAACTATATATTATATAATTTTCAAAA
1 AAAAACTATATATTATATAATTTTCAAAA
19827 AATATATTTT
Statistics
Matches: 84, Mismatches: 6, Indels: 19
0.77 0.06 0.17
Matches are distributed among these distances:
32 4 0.05
33 21 0.25
34 9 0.11
35 4 0.05
36 16 0.19
37 8 0.10
38 22 0.26
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (35 bp):
AAAAACTATATATTATATAATTTTCAAAACGTTTC
Found at i:19807 original size:26 final size:24
Alignment explanation
Indices: 19778--19841 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 24
19768 AAGTATATAT
19778 TATATATTTTAAAACGTTTCAAAAA
1 TATATATTTTAAAA-GTTTCAAAAA
* * *
19803 CTATATATTATATAATTTTCAAAAA
1 -TATATATTTTAAAAGTTTCAAAAA
19828 -ATATATTTTCAAAA
1 TATATATTTT-AAAA
19842 TGGTTTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
23 8 0.25
24 3 0.09
25 9 0.28
26 12 0.38
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (24 bp):
TATATATTTTAAAAGTTTCAAAAA
Found at i:19837 original size:15 final size:16
Alignment explanation
Indices: 19812--19841 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
19802 ACTATATATT
19812 ATATAATTTTCAAAAA
1 ATATAATTTTCAAAAA
19828 ATAT-ATTTTCAAAA
1 ATATAATTTTCAAAA
19842 TGGTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATAATTTTCAAAAA
Found at i:19870 original size:28 final size:26
Alignment explanation
Indices: 19794--19877 Score: 84
Period size: 25 Copynumber: 3.2 Consensus size: 26
19784 TTTTAAAACG
*
19794 TTTCAAAAACTATATATTATATAA--T
1 TTTCAAAAAATATATATTATA-AATGT
*
19819 TTTCAAAAAATATATTTTCA-AAATGGT
1 TTTCAAAAAATATATATT-ATAAAT-GT
*
19846 TTTTAAAAAATTATATATTATAAATGT
1 TTTCAAAAAA-TATATATTATAAATGT
19873 TTTCA
1 TTTCA
19878 TAACGTTTTC
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
24 2 0.04
25 17 0.35
26 1 0.02
27 17 0.35
28 11 0.23
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (26 bp):
TTTCAAAAAATATATATTATAAATGT
Found at i:19918 original size:33 final size:37
Alignment explanation
Indices: 19828--19950 Score: 107
Period size: 33 Copynumber: 3.4 Consensus size: 37
19818 TTTTCAAAAA
** * *
19828 ATAT-ATTTTCAAAATGGTTTTTAAAAAATTATATATT
1 ATATAATTTTCAAAAACG-TTTTCAAAAACTATATATT
* * *
19865 ATA-AATGTTTTC-ATAACGTTTTC-GAAAGTATATA-T
1 ATATAA--TTTTCAAAAACGTTTTCAAAAACTATATATT
19900 ATAT-ATTTT-AAAAACGTTTTCAAAAACTATATATT
1 ATATAATTTTCAAAAACGTTTTCAAAAACTATATATT
19935 ATATAATTTTCAAAAA
1 ATATAATTTTCAAAAA
19951 ATATATTTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
33 14 0.21
34 9 0.13
35 10 0.15
36 14 0.21
37 13 0.19
38 3 0.04
39 5 0.07
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.44
Consensus pattern (37 bp):
ATATAATTTTCAAAAACGTTTTCAAAAACTATATATT
Found at i:19955 original size:123 final size:124
Alignment explanation
Indices: 19707--20078 Score: 637
Period size: 123 Copynumber: 3.0 Consensus size: 124
19697 TATATATTAT
* *
19707 ATATAATTTCAAAATGGTTTTT-AAAAATTATAT-TATATAAATGTTTTCATAACGTTTTCAAAA
1 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATATATAAATGTTTTCATAACGTTTTCGAAA
19770 GTATATATTATATATTTT-AAAACG-TTTCAAAAACTATATATTATATAATTTTCAAAAA
66 GTATATA-TATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
19828 ATATATTTTCAAAATGGTTTTTAAAAAATTATATAT-TATAAATGTTTTCATAACGTTTTCGAAA
1 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATATATAAATGTTTTCATAACGTTTTCGAAA
19892 GTATATATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
66 GTATATATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
*
19951 ATATATTTTTAAAATGGTTTTTAAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCGAA
1 ATATATTTTCAAAATGGTTTTTAAAAAATTATATA-TATATAAATGTTTTCATAACGTTTTCGAA
20016 AGTATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
65 AG--TATA-TATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
20079 TATTTTAAAA
Statistics
Matches: 239, Mismatches: 3, Indels: 11
0.94 0.01 0.04
Matches are distributed among these distances:
121 31 0.13
122 51 0.21
123 69 0.29
124 1 0.00
125 29 0.12
127 4 0.02
128 54 0.23
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.44
Consensus pattern (124 bp):
ATATATTTTCAAAATGGTTTTTAAAAAATTATATATATATAAATGTTTTCATAACGTTTTCGAAA
GTATATATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
Found at i:20067 original size:37 final size:37
Alignment explanation
Indices: 19951--20153 Score: 182
Period size: 37 Copynumber: 5.4 Consensus size: 37
19941 TTTTCAAAAA
* ** *
19951 ATATATTTTTAAAATGGTTTTTAAAAAATTATATATTAT
1 ATATATTTTCAAAAACG-TTTT-AAAAACTATATATTAT
* * ** *
19990 ATAAATGTTTTC-ATAACGTTTTCGAAAGTATATATTAT
1 AT--ATATTTTCAAAAACGTTTTAAAAACTATATATTAT
20028 ATATATTTT-AAAAACGTTTTCAAAAACTATATATTAT
1 ATATATTTTCAAAAACGTTTT-AAAAACTATATATTAT
** *
20065 ATA-ATTTTCAAAAATATTTTAAAAACTATATAATAT
1 ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
* *
20101 ACATATTTTCAAAAATGTTTT--AAACTATATATTAT
1 ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
20136 ATATGTATTTTCAAAAAC
1 ATA--TATTTTCAAAAAC
20154 AATTTGCAAA
Statistics
Matches: 135, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
35 15 0.11
36 37 0.27
37 53 0.39
38 15 0.11
39 6 0.04
40 3 0.02
41 6 0.04
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.45
Consensus pattern (37 bp):
ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
Found at i:20165 original size:74 final size:71
Alignment explanation
Indices: 20018--20175 Score: 183
Period size: 74 Copynumber: 2.2 Consensus size: 71
20008 TTTTCGAAAG
* * * *
20018 TATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAATATT
1 TATATAATATACATATTTTAAAAACGTTTT--AAAACTATATATTATATAATTTTCAAAAACAAT
20083 TTAAAAAC
64 TTAAAAAC
*
20091 TATATAATATACATATTTTCAAAAATGTTTT-AAACTATATATTATATATGTATTTTCAAAAACA
1 TATATAATATACATATTTT-AAAAACGTTTTAAAACTATATATTATATA---ATTTTCAAAAACA
**
20155 ATTTGCAAAC
62 ATTTAAAAAC
*
20165 TGTATAATATA
1 TATATAATATA
20176 TATGTGTATA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
71 17 0.23
73 17 0.23
74 39 0.53
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (71 bp):
TATATAATATACATATTTTAAAAACGTTTTAAAACTATATATTATATAATTTTCAAAAACAATTT
AAAAAC
Found at i:20175 original size:37 final size:34
Alignment explanation
Indices: 20050--20176 Score: 101
Period size: 37 Copynumber: 3.5 Consensus size: 34
20040 AACGTTTTCA
* * *
20050 AAAACTATATATTATATAATTTTCAAAAATATTTT
1 AAAACTATATAATATATTATTTTCAAAAA-AATTT
* **
20085 AAAAACTATATAATATACATATTTTCAAAAATGTTT
1 -AAAACTATATAATATA-TTATTTTCAAAAAAATTT
*
20121 TAAACTATATATTATATATGTATTTTCAAAAACAATTT
1 AAAACTATATA--ATATAT-TATTTTCAAAAA-AATTT
* *
20159 GCAAACTGTATAATATAT
1 -AAAACTATATAATATAT
20177 ATGTGTATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
35 10 0.14
36 18 0.24
37 34 0.46
38 3 0.04
39 9 0.12
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (34 bp):
AAAACTATATAATATATTATTTTCAAAAAAATTT
Found at i:20863 original size:80 final size:81
Alignment explanation
Indices: 20769--21398 Score: 611
Period size: 81 Copynumber: 7.7 Consensus size: 81
20759 TTGAATATAA
* **
20769 TCGAACTCGAAGGTCTT-TAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAACCGATGTGCC
1 TCGAACTCAAAGGTCTTGTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
20833 TTGGAGCTGAGCGTAG
66 TTGGAGCTGAGCGTAG
* * * * * * * * *
20849 TCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGTTATG
1 TCGAACTCAAAGGTC-TTG-TAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* * *
20914 CCCTTGAAGCTGAGTGTAA
64 -CCTTGGAGCTGAGCGTAG
*** *
20933 TCGAACTCGGGGGTCTT-TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 TCGAACTCAAAGGTCTTGTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
20997 TTGGAGCTGAGCGTAG
66 TTGGAGCTGAGCGTAG
* * * * * * *
21013 TCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
1 TCGAACTCAAAGGTC-TTG-TAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* * * *
21078 CCCTCGAAGCTGAGTGTAA
64 -CCTTGGAGCTGAGCGTAG
*** * *
21097 TCGAACTCGGGGGTCTT-TGGCAGATAGCCCTTCTCGACTTAAGCTATTCTGCAAATGATGTGCC
1 TCGAACTCAAAGGTCTTGTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
*
21161 TAGGAGCTGAGCGTAG
66 TTGGAGCTGAGCGTAG
* * * * * * * * *
21177 TCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGTTATG
1 TCGAACTCAAAGGTC-TTG-TAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* * *
21242 CCCTTGAAGCTGAGTGTAA
64 -CCTTGGAGCTGAGCGTAG
* * * *
21261 TCGAACTTAAGGGTCTT-TGGCAGATAGCCCTTCTCGACTTAAGCTATTCTGCAAATGATGTGCC
1 TCGAACTCAAAGGTCTTGTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
21325 TTGGAGCTGAGCGTAG
66 TTGGAGCTGAGCGTAG
* * * * * * *
21341 TCGAACTCGAAGGTCTTGGTGGCAGGTAGCCCTTCTGGCCTTGAGCTAAGCTGCAAAT
1 TCGAACTCAAAGGTCTT-GTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
21399 AGTTTGTTTA
Statistics
Matches: 431, Mismatches: 105, Indels: 26
0.77 0.19 0.05
Matches are distributed among these distances:
80 96 0.22
81 111 0.26
82 33 0.08
83 111 0.26
84 80 0.19
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (81 bp):
TCGAACTCAAAGGTCTTGTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
TTGGAGCTGAGCGTAG
Found at i:20937 original size:164 final size:164
Alignment explanation
Indices: 20766--21357 Score: 1033
Period size: 164 Copynumber: 3.6 Consensus size: 164
20756 AAGTTGAATA
* **
20766 TAATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAACCGATGTG
1 TAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
20831 CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGT
66 CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGT
20896 TATGCTGTAAATGTTATGCCCTTGAAGCTGAGTG
131 TATGCTGTAAATGTTATGCCCTTGAAGCTGAGTG
**
20930 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
20995 CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGT
66 CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGT
* * *
21060 TATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TATGCTGTAAATGTTATGCCCTTGAAGCTGAGTG
** *
21094 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATTCTGCAAATGATGTG
1 TAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
*
21159 CCTAGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGT
66 CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGT
21224 TATGCTGTAAATGTTATGCCCTTGAAGCTGAGTG
131 TATGCTGTAAATGTTATGCCCTTGAAGCTGAGTG
* *
21258 TAATCGAACT-TAAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATTCTGCAAATGATGT
1 TAATCGAACTCGAA-GGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
*
21322 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
65 GCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTT
21358 GGTGGCAGGT
Statistics
Matches: 409, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
164 409 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (164 bp):
TAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAACAGATAACCCTTCTAGCCTTGAGT
TATGCTGTAAATGTTATGCCCTTGAAGCTGAGTG
Found at i:25417 original size:16 final size:17
Alignment explanation
Indices: 25396--25427 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
25386 TGCAAACGAT
25396 GAACAAAAA-TAAAAGA
1 GAACAAAAAGTAAAAGA
25412 GAACAAAAAGTAAAAG
1 GAACAAAAAGTAAAAG
25428 GGTTAGTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.72, C:0.06, G:0.16, T:0.06
Consensus pattern (17 bp):
GAACAAAAAGTAAAAGA
Found at i:27958 original size:36 final size:35
Alignment explanation
Indices: 27905--28043 Score: 145
Period size: 36 Copynumber: 3.8 Consensus size: 35
27895 TTTTTATTAA
* *
27905 AAAAACTATATATTATATATAATTTCAAAATGGTTTTT
1 AAAAA-TATATATTATATA-AATTTCAAAA-CGTTTTC
*
27943 AAAAAT-TATATTATATAAATGTTTTCATAACGTTTTC
1 AAAAATATATATTATATAAA---TTTCAAAACGTTTTC
* * *
27980 AAAAGTATATATTATATATATTTTAAAACGTTTTC
1 AAAAATATATATTATATAAATTTCAAAACGTTTTC
*
28015 AAAAACTATATATTATATAATTTTCAAAA
1 AAAAA-TATATATTATATAAATTTCAAAA
28044 AATATATTTT
Statistics
Matches: 85, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
35 19 0.22
36 31 0.36
37 11 0.13
38 24 0.28
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.44
Consensus pattern (35 bp):
AAAAATATATATTATATAAATTTCAAAACGTTTTC
Found at i:28024 original size:25 final size:23
Alignment explanation
Indices: 27995--28059 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 23
27985 TATATATTAT
27995 ATATATTTTAAAACGTTTTCAAAAA
1 ATATATTTTAAAA--TTTTCAAAAA
* *
28020 CTATATATTATATAATTTTCAAAAA
1 --ATATATTTTAAAATTTTCAAAAA
28045 ATATATTTTCAAAAT
1 ATATATTTT-AAAAT
28060 GGTTTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 8 0.24
24 4 0.12
25 10 0.30
27 11 0.33
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.43
Consensus pattern (23 bp):
ATATATTTTAAAATTTTCAAAAA
Found at i:28028 original size:27 final size:25
Alignment explanation
Indices: 27993--28096 Score: 77
Period size: 28 Copynumber: 3.9 Consensus size: 25
27983 AGTATATATT
*
27993 ATATATATTTTAAAACGTTTTCAAAA
1 ATATATATTATAAAA-GTTTTCAAAA
*
28019 ACTATATATTATATAA-TTTTCAAAA
1 A-TATATATTATAAAAGTTTTCAAAA
* *
28044 A-ATATATTTTCAAAATGGTTTTTAAAAA
1 ATATATATTAT-AAAA--G-TTTTCAAAA
28072 ATTATATATTATATAAATGTTTTCA
1 A-TATATATTATA-AAA-GTTTTCA
28097 TAACGTTTTC
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
23 8 0.13
24 3 0.05
25 10 0.16
26 1 0.02
27 12 0.20
28 14 0.23
29 2 0.03
30 11 0.18
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (25 bp):
ATATATATTATAAAAGTTTTCAAAA
Found at i:28054 original size:15 final size:16
Alignment explanation
Indices: 28029--28058 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
28019 ACTATATATT
28029 ATATAATTTTCAAAAA
1 ATATAATTTTCAAAAA
28045 ATAT-ATTTTCAAAA
1 ATATAATTTTCAAAA
28059 TGGTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATAATTTTCAAAAA
Found at i:28160 original size:35 final size:38
Alignment explanation
Indices: 28069--28172 Score: 103
Period size: 36 Copynumber: 2.8 Consensus size: 38
28059 TGGTTTTTAA
* *
28069 AAAATTATATATTATATA-AATGTTTTC-ATAACGTTTTC
1 AAAACTATATATTATATATAA--TTTTCAAAAACGTTTTC
* *
28107 GAAAGTATATATTATATAT-ATTTT-AAAAACGTTTTC
1 AAAACTATATATTATATATAATTTTCAAAAACGTTTTC
28143 AAAAACTATATA-T-TATATAATTTTCAAAAA
1 -AAAACTATATATTATATATAATTTTCAAAAA
28173 ATATATTTTC
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
35 5 0.09
36 20 0.36
37 14 0.25
38 17 0.30
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (38 bp):
AAAACTATATATTATATATAATTTTCAAAAACGTTTTC
Found at i:28161 original size:37 final size:38
Alignment explanation
Indices: 28045--28375 Score: 171
Period size: 37 Copynumber: 8.4 Consensus size: 38
28035 TTTTCAAAAA
** * *
28045 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATTAT
1 ATATATTTTCAAAAACG-TTTTCAAAAACTATATATTAT
* * * *
28084 ATAAATGTTTTC-ATAACGTTTTC-GAAAGTATATATTAT
1 AT--ATATTTTCAAAAACGTTTTCAAAAACTATATATTAT
28122 ATATATTTT-AAAAACGTTTTCAAAAACTATATATTAT
1 ATATATTTTCAAAAACGTTTTCAAAAACTATATATTAT
** ** * *
28159 ATA-ATTTTCAAAAAATATATTTTCAAAATGGTTTTTAAAAAATTAT
1 ATATATTTTC--AAAA-ACGTTTTCAAAA-----ACT-ATATATTAT
** * * *
28205 ATATTATATAAATGTTTTCATAACGTTTTC-GAAAGTATATATTAT
1 ATA-TAT-T---T-TCA--AAAACGTTTTCAAAAACTATATATTAT
28250 ATATATTTT-AAAAACGTTTTCAAAAACTATATATTAT
1 ATATATTTTCAAAAACGTTTTCAAAAACTATATATTAT
** *
28287 ATA-ATTTTCAAAAATATTTT-AAAAACTATATAATAT
1 ATATATTTTCAAAAACGTTTTCAAAAACTATATATTAT
* *
28323 ACATATTTTCAAAAATGTTTT---AAACTATATATTAT
1 ATATATTTTCAAAAACGTTTTCAAAAACTATATATTAT
28358 ATATGTATTTTCAAAAAC
1 ATA--TATTTTCAAAAAC
28376 AATTTGCAAA
Statistics
Matches: 225, Mismatches: 39, Indels: 58
0.70 0.12 0.18
Matches are distributed among these distances:
35 15 0.07
36 53 0.24
37 69 0.31
38 15 0.07
39 11 0.05
40 14 0.06
41 7 0.03
43 1 0.00
44 3 0.01
45 11 0.05
46 11 0.05
48 2 0.01
49 1 0.00
51 2 0.01
52 7 0.03
53 3 0.01
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (38 bp):
ATATATTTTCAAAAACGTTTTCAAAAACTATATATTAT
Found at i:28182 original size:15 final size:16
Alignment explanation
Indices: 28157--28186 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
28147 ACTATATATT
28157 ATATAATTTTCAAAAA
1 ATATAATTTTCAAAAA
28173 ATAT-ATTTTCAAAA
1 ATATAATTTTCAAAA
28187 TGGTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATAATTTTCAAAAA
Found at i:28194 original size:128 final size:128
Alignment explanation
Indices: 27921--28300 Score: 714
Period size: 128 Copynumber: 3.0 Consensus size: 128
27911 TATATATTAT
* *
27921 ATATAATTTCAAAATGGTTTTT-AAAAA-T-TATATTATATAAATGTTTTCATAACGTTTTCAAA
1 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCGAA
27983 AGTATATATTATATATATTTT-AAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
66 AGTATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
28045 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCGAA
1 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCGAA
28110 AGTATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
66 AGTATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
28173 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCGAA
1 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCGAA
28238 AGTATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
66 AGTATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
28301 TATTTTAAAA
Statistics
Matches: 250, Mismatches: 2, Indels: 4
0.98 0.01 0.02
Matches are distributed among these distances:
124 21 0.08
125 5 0.02
126 1 0.00
127 54 0.22
128 169 0.68
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.44
Consensus pattern (128 bp):
ATATATTTTCAAAATGGTTTTTAAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCGAA
AGTATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAA
Found at i:28294 original size:36 final size:37
Alignment explanation
Indices: 28173--28375 Score: 191
Period size: 37 Copynumber: 5.4 Consensus size: 37
28163 TTTTCAAAAA
** *
28173 ATATATTTTCAAAATGGTTTTTAAAAAATTATATATTAT
1 ATATATTTTCAAAAACG-TTTT-AAAAACTATATATTAT
* * ** *
28212 ATAAATGTTTTC-ATAACGTTTTCGAAAGTATATATTAT
1 AT--ATATTTTCAAAAACGTTTTAAAAACTATATATTAT
28250 ATATATTTT-AAAAACGTTTTCAAAAACTATATATTAT
1 ATATATTTTCAAAAACGTTTT-AAAAACTATATATTAT
** *
28287 ATA-ATTTTCAAAAATATTTTAAAAACTATATAATAT
1 ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
* *
28323 ACATATTTTCAAAAATGTTTT--AAACTATATATTAT
1 ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
28358 ATATGTATTTTCAAAAAC
1 ATA--TATTTTCAAAAAC
28376 AATTTGCAAA
Statistics
Matches: 136, Mismatches: 20, Indels: 18
0.78 0.11 0.10
Matches are distributed among these distances:
35 15 0.11
36 37 0.27
37 53 0.39
38 15 0.11
39 6 0.04
40 3 0.02
41 7 0.05
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (37 bp):
ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
Found at i:28387 original size:74 final size:71
Alignment explanation
Indices: 28240--28397 Score: 183
Period size: 74 Copynumber: 2.2 Consensus size: 71
28230 TTTTCGAAAG
* * * *
28240 TATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAAATATT
1 TATATAATATACATATTTTAAAAACGTTTT--AAAACTATATATTATATAATTTTCAAAAACAAT
28305 TTAAAAAC
64 TTAAAAAC
*
28313 TATATAATATACATATTTTCAAAAATGTTTT-AAACTATATATTATATATGTATTTTCAAAAACA
1 TATATAATATACATATTTT-AAAAACGTTTTAAAACTATATATTATATA---ATTTTCAAAAACA
**
28377 ATTTGCAAAC
62 ATTTAAAAAC
*
28387 TGTATAATATA
1 TATATAATATA
28398 TATGTGTATA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
71 17 0.23
73 17 0.23
74 39 0.53
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (71 bp):
TATATAATATACATATTTTAAAAACGTTTTAAAACTATATATTATATAATTTTCAAAAACAATTT
AAAAAC
Found at i:28397 original size:37 final size:34
Alignment explanation
Indices: 28272--28398 Score: 101
Period size: 37 Copynumber: 3.5 Consensus size: 34
28262 AACGTTTTCA
* * *
28272 AAAACTATATATTATATAATTTTCAAAAATATTTT
1 AAAACTATATAATATATTATTTTCAAAAA-AATTT
* **
28307 AAAAACTATATAATATACATATTTTCAAAAATGTTT
1 -AAAACTATATAATATA-TTATTTTCAAAAAAATTT
*
28343 TAAACTATATATTATATATGTATTTTCAAAAACAATTT
1 AAAACTATATA--ATATAT-TATTTTCAAAAA-AATTT
* *
28381 GCAAACTGTATAATATAT
1 -AAAACTATATAATATAT
28399 ATGTGTATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
35 10 0.14
36 18 0.24
37 34 0.46
38 3 0.04
39 9 0.12
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (34 bp):
AAAACTATATAATATATTATTTTCAAAAAAATTT
Found at i:30146 original size:3 final size:3
Alignment explanation
Indices: 30140--30170 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
30130 ATCTTCCCCC
30140 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
30171 GGAGATCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:32079 original size:18 final size:18
Alignment explanation
Indices: 32056--32091 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32046 CACTCACTGT
32056 GCTTTTAATTTTTTTCAA
1 GCTTTTAATTTTTTTCAA
32074 GCTTTTAATTTTTTTCAA
1 GCTTTTAATTTTTTTCAA
32092 TTAACTCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.06, T:0.61
Consensus pattern (18 bp):
GCTTTTAATTTTTTTCAA
Found at i:34443 original size:24 final size:24
Alignment explanation
Indices: 34416--34464 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
34406 TGCATGACAT
34416 TGTACATAGATATTTTATACATCA
1 TGTACATAGATATTTTATACATCA
*
34440 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATATTTTATACATCA
34464 T
1 T
34465 CAGGAAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (24 bp):
TGTACATAGATATTTTATACATCA
Found at i:34737 original size:21 final size:21
Alignment explanation
Indices: 34708--34761 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
34698 TCATTGAGGG
* *
34708 ACAGGGTATAGTTGGCACGCC
1 ACAGAGTATAGCTGGCACGCC
* *
34729 ACAGAGTATAACTGGCATGCC
1 ACAGAGTATAGCTGGCACGCC
*
34750 ATAGAGTATAGC
1 ACAGAGTATAGC
34762 AGATGTAGGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (21 bp):
ACAGAGTATAGCTGGCACGCC
Found at i:34914 original size:61 final size:61
Alignment explanation
Indices: 34843--34957 Score: 185
Period size: 61 Copynumber: 1.9 Consensus size: 61
34833 ATCATGTCTG
* * *
34843 GATTAACACTATAGCGTAAGCTTAGTGTAGGTGGTGGGCACGACCTTATGTGTTATATCTA
1 GATTAACACTATAGCGTAAACTTAATGTAGGTGGTGGGCACGACCTTAGGTGTTATATCTA
* *
34904 GATTAGCACTATGGCGTAAACTTAATGTAGGTGGTGGGCACGACCTTAGGTGTT
1 GATTAACACTATAGCGTAAACTTAATGTAGGTGGTGGGCACGACCTTAGGTGTT
34958 GGTATTTTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (61 bp):
GATTAACACTATAGCGTAAACTTAATGTAGGTGGTGGGCACGACCTTAGGTGTTATATCTA
Found at i:35009 original size:18 final size:18
Alignment explanation
Indices: 34986--35029 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
34976 ACAGGGTTCT
34986 TAGGGTTTTAAATTAGGC
1 TAGGGTTTTAAATTAGGC
*
35004 TAGGGTTTTAAATTGGGC
1 TAGGGTTTTAAATTAGGC
*
35022 TATGGTTT
1 TAGGGTTT
35030 ATGGTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.23, C:0.05, G:0.30, T:0.43
Consensus pattern (18 bp):
TAGGGTTTTAAATTAGGC
Found at i:35876 original size:45 final size:46
Alignment explanation
Indices: 35787--35878 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
35777 AAGACAGTGG
35787 AGAGATTTCATTGGAAGATGAATTGGGTGTTGGATAATATATATAT
1 AGAGATTTCATTGGAAGATGAATTGGGTGTTGGATAATATATATAT
35833 AGAGATTTCATTGGAAGATGAATT-GGTGTTGGATAATATATATAT
1 AGAGATTTCATTGGAAGATGAATTGGGTGTTGGATAATATATATAT
35878 A
1 A
35879 TATATAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 22 0.48
46 24 0.52
ACGTcount: A:0.36, C:0.02, G:0.25, T:0.37
Consensus pattern (46 bp):
AGAGATTTCATTGGAAGATGAATTGGGTGTTGGATAATATATATAT
Found at i:47018 original size:35 final size:36
Alignment explanation
Indices: 46973--47075 Score: 138
Period size: 35 Copynumber: 2.9 Consensus size: 36
46963 TCAACTTTGA
46973 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTAT-TTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTT-TCTTG
* * *
47009 -AAAACGGTTTTTAAAGTTTAGTAAATGTTTTCTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTTCTTG
*
47044 AAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 AAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
47076 GTTAAATATT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
34 1 0.02
35 30 0.53
36 6 0.11
37 20 0.35
ACGTcount: A:0.32, C:0.04, G:0.19, T:0.45
Consensus pattern (36 bp):
AAAAATGGTTTTCAAAGTTTGGTAAATGTTTTCTTG
Found at i:51623 original size:21 final size:21
Alignment explanation
Indices: 51599--51659 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
51589 AACTTTGAAA
51599 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
51620 AAAT-G-TTT---A-TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
51634 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
51655 AAATG
1 AAATG
51660 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:51690 original size:37 final size:36
Alignment explanation
Indices: 51591--51699 Score: 175
Period size: 35 Copynumber: 3.0 Consensus size: 36
51581 TGGCAACCAA
51591 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
51628 ATTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
51663 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
51700 GTTGAAATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
35 34 0.51
36 7 0.10
37 26 0.39
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Done.