genome.fa.s1179.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001179.1 Hibiscus syriacus cultivar Beakdansim tig00002345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  278765

Tables:   1   2   

This is table  2  of  2  ( 166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119671--119724	20	2.8	18	74	20	56	22	9	1	66	1.30
125733--125776	22	2.0	22	86	0	61	34	29	9	27	1.87
129151--129186	18	2.0	18	94	0	63	8	38	33	19	1.82
129155--129195	18	2.3	18	86	0	55	4	39	39	17	1.71
132422--132472	19	2.6	20	90	3	77	43	23	17	15	1.88
132422--132780	20	17.6	20	82	8	197	38	19	24	17	1.93
132547--132778	40	5.7	40	88	4	311	35	18	27	18	1.94
132547--132778	60	3.8	60	87	4	320	35	18	27	18	1.94
132769--132807	20	2.0	20	89	0	60	51	17	15	15	1.77
132888--132962	6	12.5	6	100	0	150	33	50	16	0	1.45
133650--133694	6	7.5	6	100	0	90	0	15	51	33	1.44
133804--133951	20	7.4	20	90	0	179	18	27	18	35	1.95
133802--133972	40	4.2	40	82	2	198	18	26	19	35	1.95
133782--133972	60	3.1	60	74	9	174	18	25	18	36	1.94
133988--134039	20	2.6	20	93	0	86	11	17	17	53	1.72
134026--134076	19	2.6	20	90	3	77	15	17	23	43	1.88
138388--138431	16	2.8	16	92	0	79	56	22	11	9	1.62
139062--139130	24	2.9	24	88	0	102	59	17	8	14	1.60
139082--139137	14	4.3	14	76	17	66	55	21	10	12	1.67
143312--143521	86	2.5	86	96	1	388	26	27	23	21	1.99
143946--143994	24	2.1	24	96	3	91	30	8	22	38	1.83
164068--164143	24	3.2	23	67	17	57	60	6	6	26	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164076--164145	23	2.9	25	75	16	92	62	5	5	25	1.40
175658--175690	6	5.5	6	100	0	66	30	18	0	51	1.46
178745--178774	2	15.0	2	100	0	60	50	0	0	50	1.00
180154--180240	44	2.0	44	86	4	122	45	18	16	19	1.85
180523--180558	2	18.5	2	94	5	65	50	0	0	50	1.00
180940--180989	27	1.9	25	84	8	64	60	16	6	18	1.55
182402--182430	15	1.9	15	100	0	58	20	20	37	20	1.94
191087--191307	114	1.9	114	93	0	379	28	14	23	34	1.93
193413--193444	16	2.0	16	100	0	64	50	18	6	25	1.70
193711--193764	11	4.5	11	76	17	54	11	18	62	7	1.50
193707--193753	15	3.4	15	75	19	57	10	19	63	6	1.47
193707--193765	26	2.3	26	100	0	118	10	18	64	6	1.46
200622--200724	48	2.1	48	80	7	111	21	15	14	48	1.80
200657--200725	24	2.9	24	77	0	75	20	14	13	52	1.74
200887--200921	2	17.5	2	100	0	70	48	0	0	51	1.00
220453--220520	27	2.5	27	100	0	136	55	11	4	27	1.55
228235--228282	17	2.7	18	83	3	62	33	8	31	27	1.86
228670--229218	264	2.2	249	84	10	702	41	19	12	27	1.87
228694--229187	259	1.9	258	86	7	712	39	20	13	27	1.89
245031--245064	17	2.0	17	88	0	50	52	32	0	14	1.42
247052--247110	20	2.7	23	84	10	79	20	20	35	23	1.96
250917--250956	21	1.9	21	85	10	55	35	10	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252410--252455	22	2.1	22	100	0	92	30	41	8	19	1.82
261683--261707	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2

The End!